fimo
fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_5 --bgfile memechip_example_output_files/background --motif MA1063.1 JASPAR2018_CORE_non-redundant.meme memechip_example_output_files/Klf1.fna
JASPAR2018_CORE_non-redundant.meme
memechip_example_output_files/Klf1.fna
0.0001
TGGGGTCCAC
0.405
CGGGTCCCAC
0.405
TTGGGCCCAG
0.517
TGGGCCCCAC
0.213
TGGGGCCCAT
0.405
TGGGGCCCAT
0.405
TGGGCCCCAG
0.405
ATGGACCCAC
0.503
CGGGGCCCAC
0.262
TGGGCCCCGC
0.405
TGTGCCCCAC
0.405
TGGGGACCAC
0.405
CAGGACCCAC
0.503
TGGGGCCCAC
0.213
TGGGCCCCAT
0.489
GGGGCCCCAC
0.344
TGGGGCCCAG
0.405
TGGGCCCCAG
0.405
CGGGCACCAC
0.518
GGGGACCCAC
0.405
CAGGACCCAC
0.503
CTGGGCCCAC
0.405
TTGGCTCCAC
0.544
CGGACCCCAC
0.528
TGGTGCCCAC
0.489
TAGGTCCCAC
0.469
TGGGACCCGC
0.472
TGGCCCCCAC
0.518
GGGGGCCCAG
0.517
AGGGGCCCAC
0.344
GAGGGCCCAC
0.405
AGGGCCCCAC
0.382
GGGGCCCCAC
0.344
ACGGACCCAC
0.549
TGGGGCCCGC
0.405
ATGGCCCCAC
0.405
CTGGCCCCAC
0.405
GGGGCTCCAC
0.528
TGGGGCCCAT
0.405
TGGGCCCCAG
0.405
TGGGTTCCAC
0.538
CAGGGCCCAC
0.405
CGGAGCCCAC
0.472
CAGGCCCCAC
0.405
ACGGCCCCAC
0.479
AGGAGCCCAC
0.544
GGGGCCCCAC
0.344
TGTGGCCCAC
0.405
TAGGGCCCAC
0.366
TGGGCCCCAG
0.405
AGGGCCCCAC
0.382
TTGGGCCCAC
0.344
ATGGCCCCAC
0.405
TGGAGCCCAC
0.405
TGGGTTCCAC
0.538
CAGGCCCCAC
0.405
ATGGCCCCAC
0.405
TGGGCCCCAC
0.213
TAGGCCCCAC
0.405
TGGGCTCCAC
0.405
AGGGGCCCGC
0.517
TGGGACCCAC
0.305
TGGGTCCCAC
0.344
GGGGCCCCAC
0.344
TGTGACCCAC
0.503
CCGGCCCCAC
0.405
AGGGTCCCAC
0.405
AGGGACCCAC
0.405
CAGGCCCCAC
0.405
TGGGACCCAG
0.503
TGTGGCCCAC
0.405
CGGGTCCCAC
0.405
TGGGTTCCAC
0.538
TGGGGCCCAC
0.213
TGGGCCCCAT
0.489
GAGGGCCCAC
0.405
CTGGTCCCAC
0.509
GAGGGCCCAC
0.405
TGGGCCCCAT
0.489
TGGGCTCCAC
0.405
GAGGACCCAC
0.529
CGGAGCCCAC
0.472
CAGGCCCCAC
0.405
TTGGCCCCAC
0.356
CTGGCCCCAC
0.405
TGGACCCCAC
0.405
TGGGTCCCAC
0.344
TGGGACCCAG
0.503
TGGGTCCCAC
0.344
CGGGCCCCGC
0.503
GGGGCCCCAC
0.344
CGGGCACCAC
0.518
CTGGCCCCAC
0.405
TTGGGCCCAG
0.517
TGGAACCCAC
0.498
TGGGTTCCAC
0.538
CGGGCCCCGC
0.503
TTGAGCCCAC
0.517
TAGGCCCCAC
0.405
TGGACCCCAC
0.405
TGGAACCCAC
0.498
ATGGCCCCAC
0.405
CAGGCCCCAC
0.405
CGTGGCCCAC
0.489
TGGACCCCAC
0.405
TGGGCCCCAC
0.213
TGGGGCCCAT
0.405
CGGGCCCCGC
0.503
TGTGGCCCAC
0.405
AGGGGCCCGC
0.517
AAGGGCCCAC
0.422
TGTGGCCCAC
0.405
TCGGTCCCAC
0.43
TGGGTCCCGC
0.549
CTGGCCCCAC
0.405
yes