fimo
fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_4 --bgfile memechip_example_output_files/background --motif MA1099.1 JASPAR2018_CORE_non-redundant.meme memechip_example_output_files/Klf1.fna
JASPAR2018_CORE_non-redundant.meme
memechip_example_output_files/Klf1.fna
0.0001
GCCACGTGTT
1
GGCACGCGTG
1
ACCACGCGTC
1
GGCACGTGCA
1
TGCACGTGCC
1
CGCACGCGCA
1
CGCACGCGCG
1
CGCACGTGAC
1
CGCACGCGAA
1
GGCACGCGCG
1
CGCACGCGCA
1
TGCACGTGTC
1
AGCACGTGTC
1
GGCACGTGAC
1
GCCACGTGTG
1
GGCACGTGTG
1
GCCACGCGGC
1
CCCACGTGCC
1
CGCACGCGCC
1
yes