fimo
fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_3 --bgfile memechip_example_output_files/background --motif MA0014.3 JASPAR2018_CORE_non-redundant.meme memechip_example_output_files/Klf1.fna
JASPAR2018_CORE_non-redundant.meme
memechip_example_output_files/Klf1.fna
0.0001
GGGCGTGGCCCA
0.959
GAGCGTCACCTG
0.959
GGGCGTCACCCT
0.971
GGGTGTGACCTA
0.959
GGGCGTGACTTG
0.959
GGGCGTGGCCCC
0.959
GGGCGTGGCCCT
0.959
CTGCGTGACTGC
0.972
TAGCATGACCCT
0.971
GGGTGTGACCAA
0.959
ATGCATGACCAC
0.959
CAGTGTGACCAC
0.959
GTCCGTGACCTG
0.959
GAGCCTGACCCT
0.959
AGGCATGACCAA
0.959
AGGGGTGACCCC
0.972
AGGCGTGGCCCA
0.959
GGGTGTGACCTG
0.959
AGGCATGACCCA
0.959
GAGCGGGACCCC
0.959
GGGCGTGTCCCC
0.959
GGGCGTGACTTC
0.959
GGGCGTGTCCAG
0.959
GGGTGTGACCAC
0.959
CAGCGTGACTAA
0.959
TAGCGTGACCAC
0.959
GGGCGTGACCGC
0.748
GGGCGTGACTTT
0.959
CAGCGTGACCTA
0.959
AAGTGTGACCAA
0.959
CGGCGTGACTCG
0.959
AGGCGTGTCCCC
0.959
AAGCGTGAACAG
0.971
CTCCGTGACCAC
0.971
GTGCGTGTCCCG
0.959
GGGCGTGACGCG
0.959
GAGCGTGACACA
0.959
GGGTGTGACCAG
0.959
CAGTGTGACCCT
0.959
GTGTGTGACCTG
0.959
AGGCGTGTCCGC
0.959
TAGCATGACCAC
0.971
GGGCGTGGCCCT
0.959
AAGGGTGACCTT
0.971
GGGCGTGTCCAC
0.959
AGGCGTGACAAG
0.959
AAGCGAGACCCC
0.959
AGGCGTGTCCTT
0.959
GGGTGTGACCCT
0.959
AGGCGTGTCCCA
0.971
GGGCGTGACCTC
0.748
GTGCGTGACTAA
0.959
GAGCGTGTCCTT
0.959
GGGCGTGACTCT
0.959
CAGCATGACCAA
0.971
GGGTGTGACCTG
0.959
GGGCGTGGCCGT
0.959
AAGCGTGACAAA
0.959
CTGCGTGACCAT
0.959
GAGCCTGACCTG
0.959
GAGCGGGACCCC
0.959
GTGCGTGGCCCG
0.959
GGGTGTGACCAA
0.959
AGGCGTGGCCCC
0.959
AGGCGTGGCCCA
0.959
GCGCGTGACTTC
0.959
yes