<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<mcast version="5.0.1" release="Wed Aug 22 15:26:53 2018 -0700">
<command-line>mcast -oc mcast_example_output_files -parse-genomic-coord Klf1.dreme Klf1.fna</command-line>
<sequence-data num-sequences="904" num-residues="452000" />
<alphabet>nucleotide</alphabet>
<motif name="CCMCRCCC" width="8" best-possible-match="CCACACCC" best-possible-rc-match="GGGTGTGG"/>
<motif name="BTTATCW" width="7" best-possible-match="CTTATCT" best-possible-rc-match="AGATAAG"/>
<motif name="MCRCCCA" width="7" best-possible-match="CCACCCA" best-possible-rc-match="TGGGTGG"/>
<motif name="RARGAAA" width="7" best-possible-match="AAAGAAA" best-possible-rc-match="TTTCTTT"/>
<motif name="AKAAAM" width="6" best-possible-match="AGAAAA" best-possible-rc-match="TTTTCT"/>
<motif name="CTGTSTS" width="7" best-possible-match="CTGTCTG" best-possible-rc-match="CAGACAG"/>
<motif name="AGGGCGK" width="7" best-possible-match="AGGGCGG" best-possible-rc-match="CCGCCCT"/>
<motif name="CCTKCCY" width="7" best-possible-match="CCTTCCT" best-possible-rc-match="AGGAAGG"/>
<motif name="TTAAAAW" width="7" best-possible-match="TTAAAAA" best-possible-rc-match="TTTTTAA"/>
<motif name="AAATAH" width="6" best-possible-match="AAATAT" best-possible-rc-match="ATATTT"/>
<motif name="CATYTCC" width="7" best-possible-match="CATTTCC" best-possible-rc-match="GGAAATG"/>
<motif name="CAGMCAC" width="7" best-possible-match="CAGCCAC" best-possible-rc-match="GTGGCTG"/>
<motif name="CACAGY" width="6" best-possible-match="CACAGC" best-possible-rc-match="GCTGTG"/>
<motif name="CTGGRGA" width="7" best-possible-match="CTGGGGA" best-possible-rc-match="TCCCCAG"/>
<motif name="SACGTGA" width="7" best-possible-match="CACGTGA" best-possible-rc-match="TCACGTG"/>
<background source="non-redundant database">
<value letter="A">0.275</value>
<value letter="C">0.225</value>
<value letter="G">0.225</value>
<value letter="T">0.275</value>
</background>
<cisml-file>cisml.xml</cisml-file>
<mcast-parmaeters>
<min-match-score>3.267</min-match-score>
<e-thresh>10.000</e-thresh>
<p-thresh>1.000</p-thresh>
<q-thresh>1.000</q-thresh>
<max-gap>50</max-gap>
<cost-factor>1</cost-factor>
<gap-open-cost>0.0653</gap-open-cost>
<gap-extend-cost>0.0653</gap-extend-cost>
</mcast-parmaeters>
<e-value-parmaeters>
<distribution>exponential</distribution>
<status>Distribution estimated successfully.</status>
<mu1>2.54</mu1>
<mu2>16</mu2>
<sigma2>1.83</sigma2>
<c>0.997</c>
<num-scores-used>1009</num-scores-used>
<num-matches>1009</num-matches>
<db-length>452000</db-length>
</e-value-parmaeters>
</mcast>
