<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED
  control_sequences CDATA "" control_count CDATA "" control_positions CDATA "">
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_positions,
  seed,
  hsfrac,
  searchsize,
  maxsize,
  norand,
  csites,
  strands,
  brief,
  psp_file,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT searchsize (#PCDATA)*>
<!ELEMENT maxsize (#PCDATA)*>
<!ELEMENT norand (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT brief (#PCDATA)*>
<!ELEMENT psp_file (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED
		   order CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                llr CDATA #REQUIRED
                p_value CDATA #REQUIRED
                e_value CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="5.0.1" release="Wed Aug 22 15:26:53 2018 -0700">
<training_set primary_sequences="crp0.fna" primary_count="18" primary_positions="1890" control_sequences="--none--" control_count="0" control_positions="0">
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<sequence id="sequence_0" name="ce1cg" length="105" weight="1.000000" />
<sequence id="sequence_1" name="ara" length="105" weight="1.000000" />
<sequence id="sequence_2" name="bglr1" length="105" weight="1.000000" />
<sequence id="sequence_3" name="crp" length="105" weight="1.000000" />
<sequence id="sequence_4" name="cya" length="105" weight="1.000000" />
<sequence id="sequence_5" name="deop2" length="105" weight="1.000000" />
<sequence id="sequence_6" name="gale" length="105" weight="1.000000" />
<sequence id="sequence_7" name="ilv" length="105" weight="1.000000" />
<sequence id="sequence_8" name="lac" length="105" weight="1.000000" />
<sequence id="sequence_9" name="male" length="105" weight="1.000000" />
<sequence id="sequence_10" name="malk" length="105" weight="1.000000" />
<sequence id="sequence_11" name="malt" length="105" weight="1.000000" />
<sequence id="sequence_12" name="ompa" length="105" weight="1.000000" />
<sequence id="sequence_13" name="tnaa" length="105" weight="1.000000" />
<sequence id="sequence_14" name="uxu1" length="105" weight="1.000000" />
<sequence id="sequence_15" name="pbr322" length="105" weight="1.000000" />
<sequence id="sequence_16" name="trn9cat" length="105" weight="1.000000" />
<sequence id="sequence_17" name="tdc" length="105" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.304</value>
<value letter_id="C">0.196</value>
<value letter_id="G">0.196</value>
<value letter_id="T">0.304</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme crp0.fna -oc meme_example_output_files -dna -mod zoops -nmotifs 3 -revcomp </command_line>
<host>Timothys-iMac.rd.unr.edu</host>
<type>zoops</type>
<nmotifs>3</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>E-value of product of p-values</object_function>
<spfun>E-value of product of p-values</spfun>
<min_width>8</min_width>
<max_width>50</max_width>
<wg>11</wg>
<ws>1</ws>
<endgaps>yes</endgaps>
<substring>yes</substring>
<minsites>2</minsites>
<maxsites>18</maxsites>
<wnsites>0.8</wnsites>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_positions>1890</num_positions>
<seed>0</seed>
<hsfrac>0</hsfrac>
<searchsize>1890</searchsize>
<maxsize>0</maxsize>
<norand>no</norand>
<csites>1000</csites>
<strands>both</strands>
<brief>1000</brief>
<psp_file></psp_file>
<priors_file></priors_file>
<reason_for_stopping>Stopped because requested number of motifs (3) found.</reason_for_stopping>
<background_frequencies source="--sequences--" order="0">
<alphabet_array>
<value letter_id="A">0.304</value>
<value letter_id="C">0.196</value>
<value letter_id="G">0.196</value>
<value letter_id="T">0.304</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="TKTGANCNABNTCACAHWT" alt="MEME-1" width="19" sites="18" ic="15.9" re="15.3" llr="191" p_value="2.0e-049" e_value="4.3e-009" bayes_threshold="7.2817" elapsed_time="0.393997">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-1081</value>
<value letter_id="C">-82</value>
<value letter_id="G">-82</value>
<value letter_id="T">135</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-245</value>
<value letter_id="C">-82</value>
<value letter_id="G">150</value>
<value letter_id="T">-13</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1081</value>
<value letter_id="C">18</value>
<value letter_id="G">-1081</value>
<value letter_id="T">135</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-45</value>
<value letter_id="C">-1081</value>
<value letter_id="G">177</value>
<value letter_id="T">-145</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">145</value>
<value letter_id="C">-82</value>
<value letter_id="G">-1081</value>
<value letter_id="T">-245</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">13</value>
<value letter_id="C">-23</value>
<value letter_id="G">-23</value>
<value letter_id="T">13</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-45</value>
<value letter_id="C">135</value>
<value letter_id="G">-82</value>
<value letter_id="T">-87</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-45</value>
<value letter_id="C">18</value>
<value letter_id="G">77</value>
<value letter_id="T">-45</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">101</value>
<value letter_id="C">-1081</value>
<value letter_id="G">18</value>
<value letter_id="T">-87</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-245</value>
<value letter_id="C">118</value>
<value letter_id="G">50</value>
<value letter_id="T">-45</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-13</value>
<value letter_id="C">50</value>
<value letter_id="G">50</value>
<value letter_id="T">-87</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1081</value>
<value letter_id="C">-182</value>
<value letter_id="G">-82</value>
<value letter_id="T">145</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1081</value>
<value letter_id="C">235</value>
<value letter_id="G">-1081</value>
<value letter_id="T">-1081</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">155</value>
<value letter_id="C">-1081</value>
<value letter_id="G">-1081</value>
<value letter_id="T">-145</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1081</value>
<value letter_id="C">235</value>
<value letter_id="G">-1081</value>
<value letter_id="T">-1081</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">145</value>
<value letter_id="C">-1081</value>
<value letter_id="G">-82</value>
<value letter_id="T">-245</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">13</value>
<value letter_id="C">50</value>
<value letter_id="G">-82</value>
<value letter_id="T">-13</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">13</value>
<value letter_id="C">-182</value>
<value letter_id="G">-1081</value>
<value letter_id="T">101</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-13</value>
<value letter_id="C">-1081</value>
<value letter_id="G">-1081</value>
<value letter_id="T">125</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.111111</value>
<value letter_id="G">0.111111</value>
<value letter_id="T">0.777778</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.055556</value>
<value letter_id="C">0.111111</value>
<value letter_id="G">0.555556</value>
<value letter_id="T">0.277778</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.222222</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.777778</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.222222</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.666667</value>
<value letter_id="T">0.111111</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.833333</value>
<value letter_id="C">0.111111</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.055556</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.333333</value>
<value letter_id="C">0.166667</value>
<value letter_id="G">0.166667</value>
<value letter_id="T">0.333333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.222222</value>
<value letter_id="C">0.500000</value>
<value letter_id="G">0.111111</value>
<value letter_id="T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.222222</value>
<value letter_id="C">0.222222</value>
<value letter_id="G">0.333333</value>
<value letter_id="T">0.222222</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.611111</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.222222</value>
<value letter_id="T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.055556</value>
<value letter_id="C">0.444444</value>
<value letter_id="G">0.277778</value>
<value letter_id="T">0.222222</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.277778</value>
<value letter_id="C">0.277778</value>
<value letter_id="G">0.277778</value>
<value letter_id="T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.055556</value>
<value letter_id="G">0.111111</value>
<value letter_id="T">0.833333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.888889</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.111111</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.833333</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.111111</value>
<value letter_id="T">0.055556</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.333333</value>
<value letter_id="C">0.277778</value>
<value letter_id="G">0.111111</value>
<value letter_id="T">0.277778</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.333333</value>
<value letter_id="C">0.055556</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.611111</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.277778</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.722222</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
T[GT][TC][GA]A[AT][CA][GACT][AG][CGT][ACG]TCACA[ACT][TA][TA]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_1" position="57" strand="plus" pvalue="7.97e-08" >
<left_flank>ACATTGATTA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TGCTATGCCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="59" strand="minus" pvalue="3.33e-07" >
<left_flank>CGCAACACAC</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>AAGGAAATCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="55" strand="plus" pvalue="1.14e-06" >
<left_flank>CCATATGCGG</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>GCGTAAGGAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_3" position="65" strand="plus" pvalue="1.27e-06" >
<left_flank>ACTGCATGTA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>CCGTGCAGTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="40" strand="minus" pvalue="1.77e-06" >
<left_flank>TGTGTCTGAA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CCAAATCTTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="16" strand="plus" pvalue="1.97e-06" >
<left_flank>CCGCCAATTC</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AGCGACGGTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_17" position="80" strand="plus" pvalue="3.31e-06" >
<left_flank>AAAGTTAATT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CCTGTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="73" strand="plus" pvalue="4.02e-06" >
<left_flank>CCCGAACGAT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>AAACAATTTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="50" strand="plus" pvalue="4.02e-06" >
<left_flank>TTTTCATATG</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>GTAAGTTTTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="11" strand="plus" pvalue="4.43e-06" >
<left_flank>ACGCAATTAA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TAGGCACCCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="63" strand="plus" pvalue="4.87e-06" >
<left_flank>AGACTGTTTT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ATGGAAGTCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="75" strand="minus" pvalue="5.35e-06" >
<left_flank>TTGATAAAAA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>ATTAACTTTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_6" position="44" strand="plus" pvalue="7.68e-06" >
<left_flank>ATTCCACTAA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TTCGCATCTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="41" strand="plus" pvalue="8.39e-06" >
<left_flank>CAGTACAAAA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TTCCCTTTGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_16" position="83" strand="minus" pvalue="1.08e-05" >
<left_flank>CGT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TCGCCAAAAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="60" strand="minus" pvalue="1.18e-05" >
<left_flank>CCACGATTTT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TTCCTTACAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="16" strand="minus" pvalue="1.90e-05" >
<left_flank>ATTCTAATTG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ATTTCACTCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="52" strand="plus" pvalue="3.16e-05" >
<left_flank>ATCAGCAAGG</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TAGACCATTT</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_2" name="CGGYGGGG" alt="MEME-2" width="8" sites="2" ic="15.0" re="17.5" llr="24" p_value="2.6e-003" e_value="1.5e+004" bayes_threshold="9.783" elapsed_time="0.640747">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">235</value>
<value letter_id="G">-765</value>
<value letter_id="T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">-765</value>
<value letter_id="G">235</value>
<value letter_id="T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">-765</value>
<value letter_id="G">235</value>
<value letter_id="T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">135</value>
<value letter_id="G">-765</value>
<value letter_id="T">71</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">-765</value>
<value letter_id="G">235</value>
<value letter_id="T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">-765</value>
<value letter_id="G">235</value>
<value letter_id="T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">-765</value>
<value letter_id="G">235</value>
<value letter_id="T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-765</value>
<value letter_id="C">-765</value>
<value letter_id="G">235</value>
<value letter_id="T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.500000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
CGG[CT]GGGG
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_7" position="4" strand="plus" pvalue="2.18e-06" >
<left_flank>GCTC</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TTTTTTGTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="40" strand="plus" pvalue="5.56e-06" >
<left_flank>CACAAAGCGA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CGTAGGGGCA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_3" name="GCATCRGRBSAGA" alt="MEME-3" width="13" sites="3" ic="21.7" re="22.9" llr="48" p_value="3.4e-006" e_value="1.8e+004" bayes_threshold="8.77981" elapsed_time="0.888870">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">-823</value>
<value letter_id="G">235</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">235</value>
<value letter_id="G">-823</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">171</value>
<value letter_id="C">-823</value>
<value letter_id="G">-823</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">-823</value>
<value letter_id="G">-823</value>
<value letter_id="T">171</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">235</value>
<value letter_id="G">-823</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">13</value>
<value letter_id="C">-823</value>
<value letter_id="G">176</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">-823</value>
<value letter_id="G">235</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">113</value>
<value letter_id="C">-823</value>
<value letter_id="G">77</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">77</value>
<value letter_id="G">77</value>
<value letter_id="T">13</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">77</value>
<value letter_id="G">176</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">171</value>
<value letter_id="C">-823</value>
<value letter_id="G">-823</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-823</value>
<value letter_id="C">-823</value>
<value letter_id="G">235</value>
<value letter_id="T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">171</value>
<value letter_id="C">-823</value>
<value letter_id="G">-823</value>
<value letter_id="T">-823</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.333333</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.666667</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.666667</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.333333</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.333333</value>
<value letter_id="G">0.333333</value>
<value letter_id="T">0.333333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.333333</value>
<value letter_id="G">0.666667</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
GCATC[GA]G[AG][CGT][GC]AGA
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_0" position="23" strand="plus" pvalue="1.86e-08" >
<left_flank>GGTTTTTGTG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ATAGCGCGTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="88" strand="minus" pvalue="2.74e-08" >
<left_flank>GCTT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TGGCGTATAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="16" strand="plus" pvalue="1.35e-07" >
<left_flank>TAACTATGCG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TTGTACTGAG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="3.74e-07" num_sites="2"><scanned_site motif_id="motif_3" strand="plus" position="23" pvalue="1.86e-08"/>
<scanned_site motif_id="motif_1" strand="plus" position="63" pvalue="4.87e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="1.77e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="57" pvalue="7.97e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="2.94e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="75" pvalue="5.35e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="2.90e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="65" pvalue="1.27e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="9.02e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="52" pvalue="3.16e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_5" pvalue="5.46e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="59" pvalue="3.33e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_6" pvalue="3.40e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="44" pvalue="7.68e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_7" pvalue="3.87e-05" num_sites="2"><scanned_site motif_id="motif_2" strand="plus" position="4" pvalue="2.18e-06"/>
<scanned_site motif_id="motif_1" strand="plus" position="41" pvalue="8.39e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_8" pvalue="9.54e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="11" pvalue="4.43e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_9" pvalue="2.21e-05" num_sites="2"><scanned_site motif_id="motif_1" strand="plus" position="16" pvalue="1.97e-06"/>
<scanned_site motif_id="motif_2" strand="plus" position="40" pvalue="5.56e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_10" pvalue="9.33e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="60" pvalue="1.18e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_11" pvalue="7.39e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="40" pvalue="1.77e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_12" pvalue="1.58e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="50" pvalue="4.02e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_13" pvalue="2.01e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="73" pvalue="4.02e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_14" pvalue="1.81e-06" num_sites="2"><scanned_site motif_id="motif_1" strand="minus" position="16" pvalue="1.90e-05"/>
<scanned_site motif_id="motif_3" strand="minus" position="88" pvalue="2.74e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_15" pvalue="4.03e-07" num_sites="2"><scanned_site motif_id="motif_3" strand="plus" position="16" pvalue="1.35e-07"/>
<scanned_site motif_id="motif_1" strand="plus" position="55" pvalue="1.14e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_16" pvalue="3.77e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="83" pvalue="1.08e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_17" pvalue="2.06e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="80" pvalue="3.31e-06"/>
</scanned_sites>
</scanned_sites_summary>
</MEME>
