# GLAM2SCAN

Version 1056

     /home/tbailey/trunk/INSTALLED/bin/glam2scan -n 25 p aln /home/tbailey/trunk/INSTALLED/db/fasta_databases/c_elegans.aa

If you use this program in your research, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey (2008) Discovering sequence motifs with arbitrary insertions and deletions, PLoS Computational Biology, 4(5), e1000071, 2008.

NAME | START | SITE | END | STRAND | SCORE
--- | --- | --- | --- | --- | ---
F36A2.1a | 49 | NCFK.TAGTDNKRIALFYVMN | 68 | + | 19.0
F36A2.1b | 49 | NCFK.TAGTDNKRIALFYVMN | 68 | + | 19.0
M01A10.1 | 631 | NKAR.IMETDYSAQWLQYYTQ | 650 | + | 18.5
T06E6.7 | 172 | NMKLFVLATDYNLFVVELVFM | 192 | + | 18.2
F41G3.12 | 326 | NSAH.VCGTDGKTYLNECFLK | 345 | + | 18.0
C38H2.2 | 177 | NDYDWFLKADDDTYVVMENLR | 197 | + | 17.8
Y59H11AR.3 | 88 | YWIK.VLQTDYEISFLIKHNCT | 108 | + | 17.8
T20F10.4 | 130 | NTFGWILETKDIMTYKINKYTK | 151 | + | 17.5
Y26D4A.10 | 130 | NTFGWILETKDIMTYKINKYTK | 151 | + | 17.5
Y40C7B.3 | 130 | NTFGWILETKDIMTYKINKYTK | 151 | + | 17.5
T08G3.3 | 184 | NPRLFVMGTDNNTF.IACVVP | 203 | + | 17.1
C30G12.7 | 102 | NVGH.VLSTINNNY.MNHQYN | 120 | + | 16.7
R13A5.7 | 54 | NIIF.IEQTDYFRNLAKYICR | 73 | + | 16.6
K07C5.2 | 104 | NSLA.TLQTDYVDLLLIHYPR | 123 | + | 16.1
C28A5.2 | 1192 | NTTY.IKKTDAVKMMLHYMYR | 1211 | + | 15.8
ZK1225.1 | 230 | SVVP.VVGTDHSNFAVLHPEL | 249 | + | 15.7
Y26D4A.2 | 286 | NFYN.VKTTD.KYYVVNTYVN | 304 | + | 15.3
F36G9.1 | 6 | NEMEYYDDTDYEDFIFWNNIM | 26 | + | 15.3
M03A8.1 | 206 | NLVD.ALKPDYVTPLVTYMVH | 225 | + | 15.2
E03H4.3 | 155 | NSFDWYLKADDDTYFAMDHLRE | 176 | + | 14.6
T24D5.1 | 163 | NHAPEIPRKDQDGYLLECNLN | 183 | + | 14.6
M01A10.2c | 640 | NDDTLIYNTDTGNYTLRSTRN | 660 | + | 14.4
M01A10.2d | 487 | NDDTLIYNTDTGNYTLRSTRN | 507 | + | 14.4
R08D7.8 | 47 | NDCC.VTLTDYDDNVLNLLEE | 66 | + | 14.3
C28A5.1 | 1197 | NTTY.IKKTDAVTMMLQFMYR | 1216 | + | 14.2