AME (Analysis of Motif Enrichment): Compiled on Jan 17 2012 at 11:54:50
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Copyright (c) Robert McLeay <r.mcleay@imb.uq.edu.au> & Timothy Bailey <t.bailey@imb.uq.edu.au>, 2009.

Command line
ame --verbose 1 --oc memechip_out/ame_out --fix-partition 820 --bgformat 0 memechip_out/seqs-centered_w_bg JASPAR_CORE_2009.meme

Not in partition maximisation mode. Fixing partition at 820.

Threshold p-value for reporting results: 0.001
Motif p-values are corrected by #Motifs * #ThresholdsTested - (476 * 1 = 476)

1. Fisher-exact p-value of motif MA0039.2 Klf4 top 820 seqs: 3.281e-63 (Corrected p-value: 1.562e-60)
2. Fisher-exact p-value of motif MA0140.1 Tal1::Gata1 top 820 seqs: 3.701e-28 (Corrected p-value: 1.761e-25)
3. Fisher-exact p-value of motif MA0035.2 Gata1 top 820 seqs: 3.701e-28 (Corrected p-value: 1.761e-25)
4. Fisher-exact p-value of motif MA0270.1 AFT2 top 820 seqs: 8.407e-23 (Corrected p-value: 4.002e-20)
5. Fisher-exact p-value of motif MA0300.1 GAT1 top 820 seqs: 3.02e-16 (Corrected p-value: 1.438e-13)
6. Fisher-exact p-value of motif MA0450.1 hkb top 820 seqs: 1.466e-13 (Corrected p-value: 6.976e-11)
7. Fisher-exact p-value of motif MA0443.1 btd top 820 seqs: 3.219e-11 (Corrected p-value: 1.532e-08)
8. Fisher-exact p-value of motif MA0309.1 GZF3 top 820 seqs: 7.745e-10 (Corrected p-value: 3.686e-07)
9. Fisher-exact p-value of motif MA0079.1 SP1 top 820 seqs: 6.103e-07 (Corrected p-value: 0.0002905)
