<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<fimo version="4.12.0" release="Tue Jun 27 02:09:01 2017 -0700">
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation=  xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
>
<command-line>/Users/cegrant/meme_4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_5 --bgfile memechip_example_output_files/background --motif MA0531.1 JASPAR_CORE_2014.meme memechip_example_output_files/Klf1.fna</command-line>
<settings>
<setting name="output directory">memechip_example_output_files/fimo_out_5</setting>
<setting name="MEME file name">JASPAR_CORE_2014.meme</setting>
<setting name="sequence file name">memechip_example_output_files/Klf1.fna</setting>
<setting name="background file name">memechip_example_output_files/background</setting>
<setting name="allow clobber">true</setting>
<setting name="compute q-values">true</setting>
<setting name="parse genomic coord.">true</setting>
<setting name="text only">false</setting>
<setting name="scan both strands">true</setting>
<setting name="output threshold">0.0001</setting>
<setting name="threshold type">p-value</setting>
<setting name="max stored scores">100000</setting>
<setting name="pseudocount">0.1</setting>
<setting name="verbosity">1</setting>
<setting name="selected motif">MA0531.1</setting>
</settings>
<sequence-data num-sequences="904" num-residues="452000" />
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<motif name="MA0004.1" alt="Arnt" width="6" best-possible-match="CACGTG"/>
<motif name="MA0006.1" alt="Arnt::Ahr" width="6" best-possible-match="TGCGTG"/>
<motif name="MA0008.1" alt="HAT5" width="8" best-possible-match="CAATTATT"/>
<motif name="MA0009.1" alt="T" width="11" best-possible-match="CTAGGTGTGAA"/>
<motif name="MA0010.1" alt="br_Z1" width="14" best-possible-match="GTAATAAACAAATC"/>
<motif name="MA0011.1" alt="br_Z2" width="8" best-possible-match="TACTATTT"/>
<motif name="MA0012.1" alt="br_Z3" width="11" best-possible-match="TAAACTAAAAG"/>
<motif name="MA0013.1" alt="br_Z4" width="11" best-possible-match="TAGTAAACAAA"/>
<motif name="MA0015.1" alt="Cf2_II" width="10" best-possible-match="GTATATATAC"/>
<motif name="MA0016.1" alt="usp" width="10" best-possible-match="GGGGTCACGG"/>
<motif name="MA0017.1" alt="NR2F1" width="14" best-possible-match="TGACCTTTGAACCT"/>
<motif name="MA0019.1" alt="Ddit3::Cebpa" width="12" best-possible-match="AGATGCAATCCC"/>
<motif name="MA0020.1" alt="Dof2" width="6" best-possible-match="AAAGCA"/>
<motif name="MA0021.1" alt="Dof3" width="6" best-possible-match="AAAGCG"/>
<motif name="MA0022.1" alt="dl_1" width="12" best-possible-match="GGGGTTTTTCCG"/>
<motif name="MA0023.1" alt="dl_2" width="10" best-possible-match="GGGGTTTTCC"/>
<motif name="MA0025.1" alt="NFIL3" width="11" best-possible-match="TTATGTAACAT"/>
<motif name="MA0026.1" alt="Eip74EF" width="7" best-possible-match="CCGGAAG"/>
<motif name="MA0027.1" alt="En1" width="11" best-possible-match="AAGTAGTGTTC"/>
<motif name="MA0028.1" alt="ELK1" width="10" best-possible-match="GAGCCGGAAG"/>
<motif name="MA0029.1" alt="Mecom" width="14" best-possible-match="AAGATAAGATAATA"/>
<motif name="MA0030.1" alt="FOXF2" width="14" best-possible-match="CAAACGTAAACAAT"/>
<motif name="MA0031.1" alt="FOXD1" width="8" best-possible-match="GTAAACAT"/>
<motif name="MA0032.1" alt="FOXC1" width="8" best-possible-match="GGTAAGTA"/>
<motif name="MA0033.1" alt="FOXL1" width="8" best-possible-match="TATACATA"/>
<motif name="MA0034.1" alt="Gamyb" width="10" best-possible-match="GACAACCGCC"/>
<motif name="MA0038.1" alt="Gfi1" width="10" best-possible-match="CAAATCACTG"/>
<motif name="MA0040.1" alt="Foxq1" width="11" best-possible-match="TATTGTTTATT"/>
<motif name="MA0041.1" alt="Foxd3" width="12" best-possible-match="GAATGTTTGTTT"/>
<motif name="MA0042.1" alt="FOXI1" width="12" best-possible-match="GGATGTTTGTTT"/>
<motif name="MA0043.1" alt="HLF" width="12" best-possible-match="GGTTACGTAATT"/>
<motif name="MA0044.1" alt="HMG-1" width="9" best-possible-match="GTTGTATTC"/>
<motif name="MA0045.1" alt="HMG-I/Y" width="16" best-possible-match="CAACAAATGGAAAAAC"/>
<motif name="MA0046.1" alt="HNF1A" width="14" best-possible-match="GGTTAATAATTAAC"/>
<motif name="MA0048.1" alt="NHLH1" width="12" best-possible-match="GCGCAGCTGCGT"/>
<motif name="MA0049.1" alt="hb" width="10" best-possible-match="GCATAAAAAA"/>
<motif name="MA0051.1" alt="IRF2" width="18" best-possible-match="GGAAAGTGAAAGCAAAAC"/>
<motif name="MA0053.1" alt="MNB1A" width="5" best-possible-match="AAAGC"/>
<motif name="MA0054.1" alt="myb.Ph3" width="9" best-possible-match="TAACCGTTT"/>
<motif name="MA0056.1" alt="MZF1_1-4" width="6" best-possible-match="TGGGGA"/>
<motif name="MA0057.1" alt="MZF1_5-13" width="10" best-possible-match="GTAGGGGGAA"/>
<motif name="MA0059.1" alt="MYC::MAX" width="11" best-possible-match="GAGCACGTGGT"/>
<motif name="MA0063.1" alt="Nkx2-5" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0064.1" alt="PBF" width="5" best-possible-match="AAAGC"/>
<motif name="MA0066.1" alt="PPARG" width="20" best-possible-match="GTAGGTCACGGTGACCTACT"/>
<motif name="MA0067.1" alt="Pax2" width="8" best-possible-match="AGTCACGG"/>
<motif name="MA0068.1" alt="Pax4" width="30" best-possible-match="GAAAAATTTCCAATACTCCACTCCCCCCCC"/>
<motif name="MA0069.1" alt="Pax6" width="14" best-possible-match="TTCACGCATGAGTT"/>
<motif name="MA0070.1" alt="PBX1" width="12" best-possible-match="CCATCAATCAAA"/>
<motif name="MA0071.1" alt="RORA_1" width="10" best-possible-match="ATCAAGGTCA"/>
<motif name="MA0072.1" alt="RORA_2" width="14" best-possible-match="TATAAGTAGGTCAA"/>
<motif name="MA0073.1" alt="RREB1" width="20" best-possible-match="CCCCAAACCACCCCCCCCCA"/>
<motif name="MA0074.1" alt="RXRA::VDR" width="15" best-possible-match="GGGTCATCGAGTTCA"/>
<motif name="MA0075.1" alt="Prrx2" width="5" best-possible-match="AATTA"/>
<motif name="MA0077.1" alt="SOX9" width="9" best-possible-match="CCATTGTTC"/>
<motif name="MA0078.1" alt="Sox17" width="9" best-possible-match="TTCATTGTC"/>
<motif name="MA0081.1" alt="SPIB" width="7" best-possible-match="AGAGGAA"/>
<motif name="MA0082.1" alt="squamosa" width="14" best-possible-match="CCAAAAATGGAAAT"/>
<motif name="MA0084.1" alt="SRY" width="9" best-possible-match="GTAAACAAT"/>
<motif name="MA0085.1" alt="Su(H)" width="16" best-possible-match="TTGTGGGAAACGAGAT"/>
<motif name="MA0086.1" alt="sna" width="6" best-possible-match="CAGGTG"/>
<motif name="MA0087.1" alt="Sox5" width="7" best-possible-match="ATTGTTT"/>
<motif name="MA0088.1" alt="znf143" width="20" best-possible-match="GATTTCCCATAATGCCTTGC"/>
<motif name="MA0089.1" alt="NFE2L1::MafG" width="6" best-possible-match="CATGAC"/>
<motif name="MA0090.1" alt="TEAD1" width="12" best-possible-match="CACATTCCTCCG"/>
<motif name="MA0091.1" alt="TAL1::TCF3" width="12" best-possible-match="CGACCATCTGTT"/>
<motif name="MA0092.1" alt="Hand1::Tcfe2a" width="10" best-possible-match="GGTCTGGCAT"/>
<motif name="MA0096.1" alt="bZIP910" width="7" best-possible-match="ATGACGT"/>
<motif name="MA0097.1" alt="bZIP911" width="12" best-possible-match="GATGACGTGGCC"/>
<motif name="MA0101.1" alt="REL" width="10" best-possible-match="GGGGATTTCC"/>
<motif name="MA0107.1" alt="RELA" width="10" best-possible-match="GGGAATTTCC"/>
<motif name="MA0108.2" alt="TBP" width="15" best-possible-match="GTATAAAAGGCGGGG"/>
<motif name="MA0109.1" alt="Hltf" width="10" best-possible-match="AACCTTATAT"/>
<motif name="MA0111.1" alt="Spz1" width="11" best-possible-match="AGGGTAACAGC"/>
<motif name="MA0115.1" alt="NR1H2::RXRA" width="17" best-possible-match="AAAGGTCAAAGGTCAAC"/>
<motif name="MA0116.1" alt="Zfp423" width="15" best-possible-match="GGCACCCAGGGGTGC"/>
<motif name="MA0117.1" alt="Mafb" width="8" best-possible-match="GCTGACGG"/>
<motif name="MA0118.1" alt="Macho-1" width="9" best-possible-match="TGGGGGTTC"/>
<motif name="MA0119.1" alt="TLX1::NFIC" width="14" best-possible-match="TGGCACCATGCCAA"/>
<motif name="MA0120.1" alt="id1" width="12" best-possible-match="TTTTCCTTTTCG"/>
<motif name="MA0121.1" alt="ARR10" width="8" best-possible-match="AGATCCGC"/>
<motif name="MA0122.1" alt="Nkx3-2" width="9" best-possible-match="TTAAGTGGA"/>
<motif name="MA0123.1" alt="abi4" width="10" best-possible-match="CGGTGCCCCC"/>
<motif name="MA0124.1" alt="NKX3-1" width="7" best-possible-match="ATACTTA"/>
<motif name="MA0125.1" alt="Nobox" width="8" best-possible-match="TAATTGGT"/>
<motif name="MA0126.1" alt="ovo" width="9" best-possible-match="AGTAACAGT"/>
<motif name="MA0127.1" alt="PEND" width="10" best-possible-match="ACTTCTTATT"/>
<motif name="MA0128.1" alt="EmBP-1" width="8" best-possible-match="ACACGTGG"/>
<motif name="MA0129.1" alt="TGA1A" width="7" best-possible-match="TACGTCA"/>
<motif name="MA0130.1" alt="ZNF354C" width="6" best-possible-match="ATCCAC"/>
<motif name="MA0131.1" alt="HINFP" width="10" best-possible-match="TAACGTCCGC"/>
<motif name="MA0132.1" alt="Pdx1" width="6" best-possible-match="CTAATT"/>
<motif name="MA0133.1" alt="BRCA1" width="7" best-possible-match="ACAACAC"/>
<motif name="MA0135.1" alt="Lhx3" width="13" best-possible-match="AAATTAATTAATC"/>
<motif name="MA0136.1" alt="ELF5" width="9" best-possible-match="TACTTCCTT"/>
<motif name="MA0139.1" alt="CTCF" width="19" best-possible-match="TGGCCACCAGGGGGCGCTA"/>
<motif name="MA0142.1" alt="Pou5f1::Sox2" width="15" best-possible-match="CTTTGTTATGCAAAT"/>
<motif name="MA0149.1" alt="EWSR1-FLI1" width="18" best-possible-match="GGAAGGAAGGAAGGAAGG"/>
<motif name="MA0062.2" alt="GABPA" width="11" best-possible-match="CCGGAAGTGGC"/>
<motif name="MA0039.2" alt="Klf4" width="10" best-possible-match="TGGGTGGGGC"/>
<motif name="MA0138.2" alt="REST" width="21" best-possible-match="TTCAGCACCATGGACAGCGCC"/>
<motif name="MA0002.2" alt="RUNX1" width="11" best-possible-match="GTCTGTGGTTT"/>
<motif name="MA0047.2" alt="Foxa2" width="12" best-possible-match="TGTTTACTTAGG"/>
<motif name="MA0112.2" alt="ESR1" width="20" best-possible-match="GGCCCAGGTCACCCTGACCT"/>
<motif name="MA0065.2" alt="PPARG::RXRA" width="15" best-possible-match="GTAGGGCAAAGGTCA"/>
<motif name="MA0151.1" alt="ARID3A" width="6" best-possible-match="ATTAAA"/>
<motif name="MA0152.1" alt="NFATC2" width="7" best-possible-match="TTTTCCA"/>
<motif name="MA0153.1" alt="HNF1B" width="12" best-possible-match="TTAATATTTAAC"/>
<motif name="MA0155.1" alt="INSM1" width="12" best-possible-match="TGTCAGGGGGCG"/>
<motif name="MA0156.1" alt="FEV" width="8" best-possible-match="CAGGAAAT"/>
<motif name="MA0157.1" alt="FOXO3" width="8" best-possible-match="TGTAAACA"/>
<motif name="MA0158.1" alt="HOXA5" width="8" best-possible-match="CACTAATT"/>
<motif name="MA0159.1" alt="RXR::RAR_DR5" width="17" best-possible-match="AGGTCATGGAGAGGTCA"/>
<motif name="MA0160.1" alt="NR4A2" width="8" best-possible-match="AAGGTCAC"/>
<motif name="MA0161.1" alt="NFIC" width="6" best-possible-match="TTGGCA"/>
<motif name="MA0163.1" alt="PLAG1" width="14" best-possible-match="GGGGCCCAAGGGGG"/>
<motif name="MA0164.1" alt="Nr2e3" width="7" best-possible-match="CAAGCTT"/>
<motif name="MA0018.2" alt="CREB1" width="8" best-possible-match="TGACGTCA"/>
<motif name="MA0099.2" alt="JUN::FOS" width="7" best-possible-match="TGACTCA"/>
<motif name="MA0165.1" alt="Abd-B" width="7" best-possible-match="TTTATGA"/>
<motif name="MA0166.1" alt="Antp" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0167.1" alt="Awh" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0168.1" alt="B-H1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0169.1" alt="B-H2" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0170.1" alt="C15" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0171.1" alt="CG11085" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0172.1" alt="CG11294" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0173.1" alt="CG11617" width="7" best-possible-match="TTAACAT"/>
<motif name="MA0174.1" alt="CG42234" width="7" best-possible-match="TTTATTA"/>
<motif name="MA0175.1" alt="CG13424" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0176.1" alt="CG15696" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0177.1" alt="CG18599" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0178.1" alt="CG32105" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0179.1" alt="CG32532" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0180.1" alt="Vsx2" width="9" best-possible-match="TTTAATTAG"/>
<motif name="MA0181.1" alt="Vsx1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0182.1" alt="CG4328" width="7" best-possible-match="TTTATTA"/>
<motif name="MA0183.1" alt="CG7056" width="8" best-possible-match="TTTAATTA"/>
<motif name="MA0184.1" alt="CG9876" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0185.1" alt="Deaf1" width="6" best-possible-match="TTCGTG"/>
<motif name="MA0186.1" alt="Dfd" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0187.1" alt="Dll" width="7" best-possible-match="TAATTAC"/>
<motif name="MA0188.1" alt="Dr" width="7" best-possible-match="CCAATTA"/>
<motif name="MA0189.1" alt="E5" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0190.1" alt="Gsc" width="6" best-possible-match="TAATCC"/>
<motif name="MA0191.1" alt="HGTX" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0192.1" alt="Hmx" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0193.1" alt="Lag1" width="7" best-possible-match="CTACCAA"/>
<motif name="MA0194.1" alt="Lim1" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0195.1" alt="Lim3" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0196.1" alt="NK7.1" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0197.1" alt="Oct" width="8" best-possible-match="TTTAATTA"/>
<motif name="MA0198.1" alt="OdsH" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0199.1" alt="Optix" width="5" best-possible-match="TGATA"/>
<motif name="MA0200.1" alt="Pph13" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0201.1" alt="Ptx1" width="7" best-possible-match="TTAATCC"/>
<motif name="MA0202.1" alt="Rx" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0203.1" alt="Scr" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0204.1" alt="Six4" width="6" best-possible-match="TGATAC"/>
<motif name="MA0205.1" alt="Trl" width="10" best-possible-match="TTGCTCTCTC"/>
<motif name="MA0206.1" alt="abd-A" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0207.1" alt="achi" width="6" best-possible-match="TGACAG"/>
<motif name="MA0208.1" alt="al" width="7" best-possible-match="TAATTAA"/>
<motif name="MA0209.1" alt="ap" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0210.1" alt="ara" width="5" best-possible-match="TAACA"/>
<motif name="MA0211.1" alt="bap" width="7" best-possible-match="TTAAGTG"/>
<motif name="MA0212.1" alt="bcd" width="6" best-possible-match="TAATCC"/>
<motif name="MA0213.1" alt="brk" width="8" best-possible-match="CTGGCGCC"/>
<motif name="MA0214.1" alt="bsh" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0215.1" alt="btn" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0217.1" alt="caup" width="5" best-possible-match="TAACA"/>
<motif name="MA0218.1" alt="ct" width="6" best-possible-match="TTGAAC"/>
<motif name="MA0219.1" alt="ems" width="7" best-possible-match="TTAATGA"/>
<motif name="MA0220.1" alt="en" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0221.1" alt="eve" width="7" best-possible-match="CTAATGA"/>
<motif name="MA0222.1" alt="exd" width="8" best-possible-match="TTTTGACA"/>
<motif name="MA0224.1" alt="exex" width="7" best-possible-match="GTAATTA"/>
<motif name="MA0225.1" alt="ftz" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0226.1" alt="hbn" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0227.1" alt="hth" width="6" best-possible-match="TGACAG"/>
<motif name="MA0228.1" alt="ind" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0229.1" alt="inv" width="8" best-possible-match="TCTAATTA"/>
<motif name="MA0230.1" alt="lab" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0231.1" alt="lbe" width="6" best-possible-match="TAACTA"/>
<motif name="MA0232.1" alt="lbl" width="6" best-possible-match="TAATTA"/>
<motif name="MA0233.1" alt="mirr" width="5" best-possible-match="AAACA"/>
<motif name="MA0234.1" alt="oc" width="6" best-possible-match="TAATCC"/>
<motif name="MA0235.1" alt="onecut" width="7" best-possible-match="TTGATTT"/>
<motif name="MA0236.1" alt="otp" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0238.1" alt="pb" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0239.1" alt="prd" width="9" best-possible-match="AGTAACAGT"/>
<motif name="MA0240.1" alt="repo" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0241.1" alt="ro" width="7" best-possible-match="CTAATTA"/>
<motif name="MA0242.1" alt="run::Bgb" width="9" best-possible-match="TAACCGCAA"/>
<motif name="MA0243.1" alt="sd" width="12" best-possible-match="GACATTCCTCGA"/>
<motif name="MA0244.1" alt="slbo" width="8" best-possible-match="ATTGCAAA"/>
<motif name="MA0245.1" alt="slou" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0246.1" alt="so" width="6" best-possible-match="TGATAC"/>
<motif name="MA0248.1" alt="tup" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0249.1" alt="twi" width="12" best-possible-match="TCGCATATGTTG"/>
<motif name="MA0250.1" alt="unc-4" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0251.1" alt="unpg" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0252.1" alt="vis" width="6" best-possible-match="TGACAG"/>
<motif name="MA0253.1" alt="vnd" width="9" best-possible-match="TTTCAAGTG"/>
<motif name="MA0254.1" alt="vvl" width="6" best-possible-match="TATGCA"/>
<motif name="MA0255.1" alt="z" width="10" best-possible-match="TTGAGTGATT"/>
<motif name="MA0256.1" alt="zen" width="7" best-possible-match="CTAATGA"/>
<motif name="MA0257.1" alt="zen2" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0094.2" alt="Ubx" width="8" best-possible-match="TTTAATTA"/>
<motif name="MA0259.1" alt="HIF1A::ARNT" width="8" best-possible-match="GGACGTGC"/>
<motif name="MA0260.1" alt="che-1" width="6" best-possible-match="GAAACC"/>
<motif name="MA0261.1" alt="lin-14" width="6" best-possible-match="GAACAC"/>
<motif name="MA0262.1" alt="mab-3" width="13" best-possible-match="AATGTTGCGAATT"/>
<motif name="MA0263.1" alt="ttx-3::ceh-10" width="14" best-possible-match="ATTGGCTTCGTTAA"/>
<motif name="MA0264.1" alt="ceh-22" width="11" best-possible-match="ACCACTTGAAA"/>
<motif name="MA0265.1" alt="ABF1" width="16" best-possible-match="TCGTATAAAGTGATAT"/>
<motif name="MA0266.1" alt="ABF2" width="7" best-possible-match="CTCTAGA"/>
<motif name="MA0267.1" alt="ACE2" width="7" best-possible-match="ACCAGCA"/>
<motif name="MA0268.1" alt="ADR1" width="7" best-possible-match="ACCCCAC"/>
<motif name="MA0269.1" alt="AFT1" width="21" best-possible-match="TTACATATTGCACCCGATTGG"/>
<motif name="MA0270.1" alt="AFT2" width="8" best-possible-match="CACACCCC"/>
<motif name="MA0271.1" alt="ARG80" width="6" best-possible-match="AGACGC"/>
<motif name="MA0272.1" alt="ARG81" width="8" best-possible-match="GTGACTCT"/>
<motif name="MA0273.1" alt="ARO80" width="21" best-possible-match="GATAATTCTCGGCAAGTATGT"/>
<motif name="MA0274.1" alt="ARR1" width="8" best-possible-match="ACTTGAAT"/>
<motif name="MA0275.1" alt="ASG1" width="6" best-possible-match="CCGGAA"/>
<motif name="MA0276.1" alt="ASH1" width="10" best-possible-match="CCGGATCGGG"/>
<motif name="MA0277.1" alt="AZF1" width="9" best-possible-match="AAAAAGAAA"/>
<motif name="MA0278.1" alt="BAS1" width="21" best-possible-match="GCACAGCCAGAGTCAAGTCAA"/>
<motif name="MA0279.1" alt="CAD1" width="10" best-possible-match="ATTAGTAAGC"/>
<motif name="MA0280.1" alt="CAT8" width="6" best-possible-match="CCGGAA"/>
<motif name="MA0281.1" alt="CBF1" width="8" best-possible-match="GCACGTGA"/>
<motif name="MA0282.1" alt="CEP3" width="8" best-possible-match="CTCGGAAA"/>
<motif name="MA0283.1" alt="CHA4" width="8" best-possible-match="GGCGGAGA"/>
<motif name="MA0284.1" alt="CIN5" width="10" best-possible-match="TTACGTAATC"/>
<motif name="MA0285.1" alt="CRZ1" width="9" best-possible-match="CTAAGCCAC"/>
<motif name="MA0286.1" alt="CST6" width="9" best-possible-match="ATGACGTAA"/>
<motif name="MA0287.1" alt="CUP2" width="11" best-possible-match="CAGCAAAAATG"/>
<motif name="MA0288.1" alt="CUP9" width="9" best-possible-match="TGACACATT"/>
<motif name="MA0289.1" alt="DAL80" width="7" best-possible-match="CGATAAG"/>
<motif name="MA0290.1" alt="DAL81" width="19" best-possible-match="AAAAGCCGCGGGCGGGATT"/>
<motif name="MA0291.1" alt="DAL82" width="9" best-possible-match="AATGTGCGC"/>
<motif name="MA0292.1" alt="ECM22" width="7" best-possible-match="CTCCGGA"/>
<motif name="MA0293.1" alt="ECM23" width="11" best-possible-match="AAAGATCTAAA"/>
<motif name="MA0294.1" alt="EDS1" width="9" best-possible-match="CGGAAAAAT"/>
<motif name="MA0295.1" alt="FHL1" width="8" best-possible-match="GACGCAAA"/>
<motif name="MA0296.1" alt="FKH1" width="20" best-possible-match="TGAATTGTAAACAAAGAGGA"/>
<motif name="MA0297.1" alt="FKH2" width="7" best-possible-match="GTAAACA"/>
<motif name="MA0298.1" alt="FZF1" width="6" best-possible-match="CTATCA"/>
<motif name="MA0299.1" alt="GAL4" width="15" best-possible-match="CGGGGAACAGTACTC"/>
<motif name="MA0300.1" alt="GAT1" width="8" best-possible-match="CCGATAAG"/>
<motif name="MA0301.1" alt="GAT3" width="9" best-possible-match="AGATCTACA"/>
<motif name="MA0302.1" alt="GAT4" width="11" best-possible-match="AAAGATCTAAA"/>
<motif name="MA0303.1" alt="GCN4" width="21" best-possible-match="CAAGGGATGAGTCATACTTCA"/>
<motif name="MA0304.1" alt="GCR1" width="8" best-possible-match="TGGAAGCC"/>
<motif name="MA0305.1" alt="GCR2" width="7" best-possible-match="GCTTCCT"/>
<motif name="MA0306.1" alt="GIS1" width="9" best-possible-match="ACCCCTAAA"/>
<motif name="MA0307.1" alt="GLN3" width="5" best-possible-match="GATAA"/>
<motif name="MA0308.1" alt="GSM1" width="21" best-possible-match="ATTAAAAAACTCCGGAGTATA"/>
<motif name="MA0309.1" alt="GZF3" width="8" best-possible-match="TGATAAGA"/>
<motif name="MA0310.1" alt="HAC1" width="8" best-possible-match="GACACGTG"/>
<motif name="MA0311.1" alt="HAL9" width="5" best-possible-match="CGGAA"/>
<motif name="MA0312.1" alt="HAP1" width="8" best-possible-match="CGGAGATA"/>
<motif name="MA0313.1" alt="HAP2" width="5" best-possible-match="TTGGT"/>
<motif name="MA0314.1" alt="HAP3" width="15" best-possible-match="TCTGATTGGTTCAGA"/>
<motif name="MA0315.1" alt="HAP4" width="15" best-possible-match="ACCAATCAGAGGCGA"/>
<motif name="MA0316.1" alt="HAP5" width="15" best-possible-match="TGGGATCTGATTGGT"/>
<motif name="MA0317.1" alt="HCM1" width="8" best-possible-match="ATAAACAA"/>
<motif name="MA0318.1" alt="HMRA2" width="8" best-possible-match="CATGTAAT"/>
<motif name="MA0319.1" alt="HSF1" width="8" best-possible-match="ATGGAACA"/>
<motif name="MA0320.1" alt="IME1" width="8" best-possible-match="CCGCCGAG"/>
<motif name="MA0321.1" alt="INO2" width="9" best-possible-match="GCATGTGAA"/>
<motif name="MA0322.1" alt="INO4" width="9" best-possible-match="GCATGTGAA"/>
<motif name="MA0323.1" alt="IXR1" width="15" best-possible-match="AAGCCGGAAGCGGGG"/>
<motif name="MA0324.1" alt="LEU3" width="10" best-possible-match="CCGTTACCGG"/>
<motif name="MA0325.1" alt="LYS14" width="8" best-possible-match="CCGGAATT"/>
<motif name="MA0326.1" alt="MAC1" width="8" best-possible-match="TTTGCTCA"/>
<motif name="MA0327.1" alt="MATA1" width="7" best-possible-match="ACACAAT"/>
<motif name="MA0328.1" alt="MATALPHA2" width="9" best-possible-match="CATGTAATT"/>
<motif name="MA0329.1" alt="MBP1" width="7" best-possible-match="ACGCGTA"/>
<motif name="MA0330.1" alt="MBP1::SWI6" width="7" best-possible-match="ACGCGTT"/>
<motif name="MA0331.1" alt="MCM1" width="12" best-possible-match="CCCAATTAGGAA"/>
<motif name="MA0332.1" alt="MET28" width="6" best-possible-match="CTGTGG"/>
<motif name="MA0333.1" alt="MET31" width="9" best-possible-match="AGTGTGGCG"/>
<motif name="MA0334.1" alt="MET32" width="7" best-possible-match="CGCCACA"/>
<motif name="MA0335.1" alt="MET4" width="8" best-possible-match="AACTGTGG"/>
<motif name="MA0336.1" alt="MGA1" width="21" best-possible-match="AGGACTATAGAACACTCTAAA"/>
<motif name="MA0337.1" alt="MIG1" width="7" best-possible-match="CCCCCGC"/>
<motif name="MA0338.1" alt="MIG2" width="7" best-possible-match="CCCCGCA"/>
<motif name="MA0339.1" alt="MIG3" width="7" best-possible-match="CCCCGCA"/>
<motif name="MA0340.1" alt="MOT3" width="6" best-possible-match="TAGGTA"/>
<motif name="MA0341.1" alt="MSN2" width="5" best-possible-match="AGGGG"/>
<motif name="MA0342.1" alt="MSN4" width="5" best-possible-match="AGGGG"/>
<motif name="MA0343.1" alt="NDT80" width="21" best-possible-match="TTTCCGGCCACAAAAACGCAA"/>
<motif name="MA0344.1" alt="NHP10" width="8" best-possible-match="GCCGGGGA"/>
<motif name="MA0345.1" alt="NHP6A" width="21" best-possible-match="ATGACCTATATATAAAAATGA"/>
<motif name="MA0346.1" alt="NHP6B" width="20" best-possible-match="TTTATTTATATATAATATGA"/>
<motif name="MA0347.1" alt="NRG1" width="20" best-possible-match="CTAGATCAGGGTCCATCGCA"/>
<motif name="MA0348.1" alt="OAF1" width="9" best-possible-match="TCGGAGATA"/>
<motif name="MA0349.1" alt="OPI1" width="7" best-possible-match="CGAACCG"/>
<motif name="MA0350.1" alt="TOD6" width="21" best-possible-match="AGGCACAGCTCATCGCGTTTT"/>
<motif name="MA0351.1" alt="DOT6" width="21" best-possible-match="TTCTGCACCTCATCGCATCCT"/>
<motif name="MA0352.1" alt="PDR1" width="8" best-possible-match="TCCGCGGA"/>
<motif name="MA0353.1" alt="PDR3" width="8" best-possible-match="TCCGCGGA"/>
<motif name="MA0354.1" alt="PDR8" width="8" best-possible-match="ACGGAGAT"/>
<motif name="MA0355.1" alt="PHD1" width="10" best-possible-match="ACCTGCAGCA"/>
<motif name="MA0356.1" alt="PHO2" width="6" best-possible-match="ATAATA"/>
<motif name="MA0357.1" alt="PHO4" width="8" best-possible-match="GCACGTGC"/>
<motif name="MA0358.1" alt="PUT3" width="8" best-possible-match="CCCGGGAA"/>
<motif name="MA0359.1" alt="RAP1" width="10" best-possible-match="CACCCATACA"/>
<motif name="MA0360.1" alt="RDR1" width="8" best-possible-match="TGCGGAAC"/>
<motif name="MA0361.1" alt="RDS1" width="7" best-possible-match="CGGCCGA"/>
<motif name="MA0362.1" alt="RDS2" width="7" best-possible-match="CTCGGGG"/>
<motif name="MA0363.1" alt="REB1" width="9" best-possible-match="GTTACCCGG"/>
<motif name="MA0364.1" alt="REI1" width="7" best-possible-match="CCCCTGA"/>
<motif name="MA0365.1" alt="RFX1" width="8" best-possible-match="GGTTGCTA"/>
<motif name="MA0366.1" alt="RGM1" width="5" best-possible-match="AGGGG"/>
<motif name="MA0367.1" alt="RGT1" width="11" best-possible-match="AATTTTTCCGG"/>
<motif name="MA0368.1" alt="RIM101" width="7" best-possible-match="CGCCAAG"/>
<motif name="MA0369.1" alt="RLM1" width="18" best-possible-match="AGTTCTATAAATAGATTC"/>
<motif name="MA0370.1" alt="RME1" width="10" best-possible-match="TCCAAAGGAA"/>
<motif name="MA0371.1" alt="ROX1" width="12" best-possible-match="TCCATTGTTCTC"/>
<motif name="MA0372.1" alt="RPH1" width="8" best-possible-match="ACCCCTAA"/>
<motif name="MA0373.1" alt="RPN4" width="7" best-possible-match="GGTGGCG"/>
<motif name="MA0374.1" alt="RSC3" width="7" best-possible-match="CGCGCGG"/>
<motif name="MA0375.1" alt="RSC30" width="8" best-possible-match="CGCGCGCG"/>
<motif name="MA0376.1" alt="RTG3" width="20" best-possible-match="ATATTAGCACGTGCTTAGTC"/>
<motif name="MA0377.1" alt="SFL1" width="21" best-possible-match="TAGAGAATAGAAGAAATAAAA"/>
<motif name="MA0378.1" alt="SFP1" width="21" best-possible-match="ATTGAAAAAAATTTTCTACGG"/>
<motif name="MA0379.1" alt="SIG1" width="5" best-possible-match="ATATA"/>
<motif name="MA0380.1" alt="SIP4" width="7" best-possible-match="CTCCGGA"/>
<motif name="MA0381.1" alt="SKN7" width="6" best-possible-match="GGCCAT"/>
<motif name="MA0382.1" alt="SKO1" width="8" best-possible-match="ACGTAATG"/>
<motif name="MA0383.1" alt="SMP1" width="21" best-possible-match="TTACCTATAATTAAATTAGCA"/>
<motif name="MA0384.1" alt="SNT2" width="11" best-possible-match="TGGTAGCGCCG"/>
<motif name="MA0385.1" alt="SOK2" width="11" best-possible-match="ACCTGCAGGCA"/>
<motif name="MA0386.1" alt="TBP" width="21" best-possible-match="GACTAGATATATATATTCGAT"/>
<motif name="MA0387.1" alt="SPT2" width="10" best-possible-match="AATTAAAGAA"/>
<motif name="MA0388.1" alt="SPT23" width="8" best-possible-match="GAAATCAA"/>
<motif name="MA0389.1" alt="SRD1" width="8" best-possible-match="AGATCTAC"/>
<motif name="MA0390.1" alt="STB3" width="21" best-possible-match="GTCCAAAATTTTTCACTCTGG"/>
<motif name="MA0391.1" alt="STB4" width="7" best-possible-match="CTCGGAA"/>
<motif name="MA0392.1" alt="STB5" width="8" best-possible-match="CGGTGTTA"/>
<motif name="MA0393.1" alt="STE12" width="7" best-possible-match="TGAAACA"/>
<motif name="MA0394.1" alt="STP1" width="8" best-possible-match="TGCGGCGC"/>
<motif name="MA0395.1" alt="STP2" width="20" best-possible-match="TGATCGGCGCCGCACGACGA"/>
<motif name="MA0396.1" alt="STP3" width="9" best-possible-match="GCTAGCGCA"/>
<motif name="MA0397.1" alt="STP4" width="9" best-possible-match="GATAGCGCA"/>
<motif name="MA0398.1" alt="SUM1" width="9" best-possible-match="AAAATTTTT"/>
<motif name="MA0399.1" alt="SUT1" width="7" best-possible-match="CGCGGGG"/>
<motif name="MA0400.1" alt="SUT2" width="20" best-possible-match="ATGATAAACTCCGAAAATTT"/>
<motif name="MA0401.1" alt="SWI4" width="8" best-possible-match="ACGCGAAA"/>
<motif name="MA0402.1" alt="SWI5" width="8" best-possible-match="TGCTGGTT"/>
<motif name="MA0403.1" alt="TBF1" width="8" best-possible-match="AACCCTAA"/>
<motif name="MA0404.1" alt="TBS1" width="8" best-possible-match="CGGATCCG"/>
<motif name="MA0405.1" alt="TEA1" width="8" best-possible-match="GCGGACAT"/>
<motif name="MA0406.1" alt="TEC1" width="8" best-possible-match="ACATTCCC"/>
<motif name="MA0407.1" alt="THI2" width="15" best-possible-match="GGAAACTCTAAGAAC"/>
<motif name="MA0408.1" alt="TOS8" width="8" best-possible-match="CTGTCAAA"/>
<motif name="MA0409.1" alt="TYE7" width="7" best-possible-match="CACGTGA"/>
<motif name="MA0410.1" alt="UGA3" width="8" best-possible-match="CGGCGGGA"/>
<motif name="MA0411.1" alt="UPC2" width="7" best-possible-match="TATACGA"/>
<motif name="MA0412.1" alt="UME6" width="13" best-possible-match="TCGGCGGCTAATT"/>
<motif name="MA0413.1" alt="USV1" width="20" best-possible-match="AAATTCCCCCTGAATTTGTG"/>
<motif name="MA0414.1" alt="XBP1" width="7" best-possible-match="CTCGAGA"/>
<motif name="MA0415.1" alt="YAP1" width="20" best-possible-match="ATTTGCTTACGTAAGCTCGT"/>
<motif name="MA0416.1" alt="YAP3" width="8" best-possible-match="ATTACGTA"/>
<motif name="MA0417.1" alt="YAP5" width="6" best-possible-match="AAGCAT"/>
<motif name="MA0418.1" alt="YAP6" width="20" best-possible-match="GGTCTGATTACGTAAGCGAC"/>
<motif name="MA0419.1" alt="YAP7" width="11" best-possible-match="ATTAGTAAGCA"/>
<motif name="MA0420.1" alt="YBR239C" width="8" best-possible-match="ACCGGAAC"/>
<motif name="MA0421.1" alt="YDR026C" width="10" best-possible-match="TTTACCCGGC"/>
<motif name="MA0422.1" alt="YDR520C" width="10" best-possible-match="CCGGAGATAA"/>
<motif name="MA0423.1" alt="YER130C" width="9" best-possible-match="ACCCCTATT"/>
<motif name="MA0424.1" alt="YER184C" width="8" best-possible-match="CTCCGGAA"/>
<motif name="MA0425.1" alt="YGR067C" width="14" best-possible-match="ACCCCACTTTTTTA"/>
<motif name="MA0426.1" alt="YHP1" width="6" best-possible-match="TAATTG"/>
<motif name="MA0427.1" alt="YJL103C" width="11" best-possible-match="AGCTCCGGAGA"/>
<motif name="MA0428.1" alt="YKL222C" width="9" best-possible-match="AACGGAAAT"/>
<motif name="MA0429.1" alt="YLL054C" width="7" best-possible-match="CGGCCGA"/>
<motif name="MA0430.1" alt="YLR278C" width="8" best-possible-match="CCGGAGTT"/>
<motif name="MA0431.1" alt="YML081W" width="9" best-possible-match="ACCCCGCAC"/>
<motif name="MA0432.1" alt="YNR063W" width="8" best-possible-match="TCGGAGAT"/>
<motif name="MA0433.1" alt="YOX1" width="8" best-possible-match="TTAATTAA"/>
<motif name="MA0434.1" alt="YPR013C" width="9" best-possible-match="TGTAGATCA"/>
<motif name="MA0435.1" alt="YPR015C" width="20" best-possible-match="TGAAGACGTAAATCCTTACA"/>
<motif name="MA0436.1" alt="YPR022C" width="7" best-possible-match="CCCCACG"/>
<motif name="MA0437.1" alt="YPR196W" width="9" best-possible-match="ATTTCTCCG"/>
<motif name="MA0438.1" alt="YRM1" width="8" best-possible-match="ACGGAAAT"/>
<motif name="MA0439.1" alt="YRR1" width="11" best-possible-match="CTTATCTCCGC"/>
<motif name="MA0440.1" alt="ZAP1" width="15" best-possible-match="ACCTTAAAGGTCATG"/>
<motif name="MA0441.1" alt="ZMS1" width="9" best-possible-match="TTCCCCGCA"/>
<motif name="MA0442.1" alt="SOX10" width="6" best-possible-match="CTTTGT"/>
<motif name="MA0443.1" alt="btd" width="10" best-possible-match="AGGGGGCGGA"/>
<motif name="MA0444.1" alt="CG34031" width="7" best-possible-match="TTAATTG"/>
<motif name="MA0445.1" alt="D" width="11" best-possible-match="TCCATTGTTCT"/>
<motif name="MA0446.1" alt="fkh" width="11" best-possible-match="TGTTTGCTTAA"/>
<motif name="MA0447.1" alt="gt" width="10" best-possible-match="ATTACGTAAT"/>
<motif name="MA0448.1" alt="H2.0" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0449.1" alt="h" width="10" best-possible-match="GGCACGTGCC"/>
<motif name="MA0450.1" alt="hkb" width="9" best-possible-match="GGGGCGTGA"/>
<motif name="MA0451.1" alt="kni" width="12" best-possible-match="AAACTAGAGCAC"/>
<motif name="MA0453.1" alt="nub" width="12" best-possible-match="TATGCAAATTAG"/>
<motif name="MA0454.1" alt="odd" width="11" best-possible-match="AACAGTAGCAG"/>
<motif name="MA0456.1" alt="opa" width="12" best-possible-match="GACCCCCCGCTG"/>
<motif name="MA0457.1" alt="PHDP" width="7" best-possible-match="TTAATTA"/>
<motif name="MA0458.1" alt="slp1" width="11" best-possible-match="TTGTTTACATT"/>
<motif name="MA0459.1" alt="tll" width="10" best-possible-match="AAAAGTCAAA"/>
<motif name="MA0460.1" alt="ttk" width="9" best-possible-match="AAGGATAAT"/>
<motif name="MA0141.2" alt="Esrrb" width="12" best-possible-match="AGGTCAAGGTCA"/>
<motif name="MA0145.2" alt="Tcfcp2l1" width="14" best-possible-match="CCAGTTCAAACCAG"/>
<motif name="MA0146.2" alt="Zfx" width="14" best-possible-match="GGGGCCGAGGCCTG"/>
<motif name="MA0461.1" alt="Atoh1" width="8" best-possible-match="CAGATGGC"/>
<motif name="MA0462.1" alt="BATF::JUN" width="11" best-possible-match="GAAATGACTCA"/>
<motif name="MA0463.1" alt="Bcl6" width="14" best-possible-match="TTTCCTAGAAAGCA"/>
<motif name="MA0464.1" alt="Bhlhe40" width="11" best-possible-match="CTCACGTGCAC"/>
<motif name="MA0465.1" alt="CDX2" width="11" best-possible-match="AAGCCATAAAA"/>
<motif name="MA0466.1" alt="CEBPB" width="11" best-possible-match="TATTGCACAAT"/>
<motif name="MA0467.1" alt="Crx" width="11" best-possible-match="AAGAGGATTAG"/>
<motif name="MA0468.1" alt="DUX4" width="11" best-possible-match="TAATTTAATCA"/>
<motif name="MA0469.1" alt="E2F3" width="15" best-possible-match="CTCCCGCCCCCACTC"/>
<motif name="MA0470.1" alt="E2F4" width="11" best-possible-match="GGGCGGGAAGG"/>
<motif name="MA0471.1" alt="E2F6" width="11" best-possible-match="GGGCGGGAAGG"/>
<motif name="MA0472.1" alt="EGR2" width="15" best-possible-match="CCCCCGCCCACGCAC"/>
<motif name="MA0473.1" alt="ELF1" width="13" best-possible-match="GAACCAGGAAGTG"/>
<motif name="MA0474.1" alt="Erg" width="11" best-possible-match="ACAGGAAGTGG"/>
<motif name="MA0475.1" alt="FLI1" width="11" best-possible-match="ACAGGAAGTGG"/>
<motif name="MA0476.1" alt="FOS" width="11" best-possible-match="TGTGACTCATT"/>
<motif name="MA0477.1" alt="FOSL1" width="11" best-possible-match="GGTGACTCATG"/>
<motif name="MA0478.1" alt="FOSL2" width="11" best-possible-match="GGATGACTCAT"/>
<motif name="MA0479.1" alt="FOXH1" width="11" best-possible-match="TCCAATCCACA"/>
<motif name="MA0480.1" alt="Foxo1" width="11" best-possible-match="TCCTGTTTACA"/>
<motif name="MA0481.1" alt="FOXP1" width="15" best-possible-match="CAAAAGTAAACAAAG"/>
<motif name="MA0482.1" alt="Gata4" width="11" best-possible-match="TCTTATCTCCC"/>
<motif name="MA0483.1" alt="Gfi1b" width="11" best-possible-match="AAATCACAGCA"/>
<motif name="MA0484.1" alt="HNF4G" width="15" best-possible-match="AGAGTCCAAAGTCCA"/>
<motif name="MA0485.1" alt="Hoxc9" width="13" best-possible-match="GGCCATAAATCAC"/>
<motif name="MA0486.1" alt="HSF1" width="15" best-possible-match="CTTCTAGAAGGTTCT"/>
<motif name="MA0488.1" alt="JUN" width="13" best-possible-match="AAGATGATGTCAT"/>
<motif name="MA0489.1" alt="JUN" width="14" best-possible-match="AGGAGATGACTCAT"/>
<motif name="MA0490.1" alt="JUNB" width="11" best-possible-match="GGATGACTCAT"/>
<motif name="MA0491.1" alt="JUND" width="11" best-possible-match="GGTGACTCATC"/>
<motif name="MA0492.1" alt="JUND" width="15" best-possible-match="AAAGATGATGTCATC"/>
<motif name="MA0493.1" alt="Klf1" width="11" best-possible-match="GGCCACACCCA"/>
<motif name="MA0494.1" alt="Nr1h3::Rxra" width="19" best-possible-match="TGACCTAAAGTAACCTCTG"/>
<motif name="MA0495.1" alt="MAFF" width="18" best-possible-match="GCTGAGTCAGCAATTTTT"/>
<motif name="MA0496.1" alt="MAFK" width="15" best-possible-match="CTGAGTCAGCAATTT"/>
<motif name="MA0497.1" alt="MEF2C" width="15" best-possible-match="ATGCTAAAAATAGAA"/>
<motif name="MA0498.1" alt="Meis1" width="15" best-possible-match="AGCTGTCACTCACCT"/>
<motif name="MA0499.1" alt="Myod1" width="13" best-possible-match="TGCAGCTGTCCCT"/>
<motif name="MA0500.1" alt="Myog" width="11" best-possible-match="GACAGCTGCAG"/>
<motif name="MA0501.1" alt="NFE2::MAF" width="15" best-possible-match="ATGACTCAGCAATTT"/>
<motif name="MA0502.1" alt="NFYB" width="15" best-possible-match="AAATGGACCAATCAG"/>
<motif name="MA0503.1" alt="Nkx2-5" width="11" best-possible-match="AGCCACTCAAG"/>
<motif name="MA0504.1" alt="NR2C2" width="15" best-possible-match="AGGGGTCAGAGGTCA"/>
<motif name="MA0505.1" alt="Nr5a2" width="15" best-possible-match="AAGTTCAAGGTCAGC"/>
<motif name="MA0506.1" alt="NRF1" width="11" best-possible-match="GCGCCTGCGCA"/>
<motif name="MA0507.1" alt="POU2F2" width="13" best-possible-match="TTCATTTGCATAT"/>
<motif name="MA0508.1" alt="PRDM1" width="15" best-possible-match="AGAAAGTGAAAGTGA"/>
<motif name="MA0509.1" alt="Rfx1" width="14" best-possible-match="GTTGCCATGGCAAC"/>
<motif name="MA0510.1" alt="RFX5" width="15" best-possible-match="CTCCCTGGCAACAGC"/>
<motif name="MA0511.1" alt="RUNX2" width="15" best-possible-match="GGGGTTTGTGGTTTG"/>
<motif name="MA0512.1" alt="Rxra" width="11" best-possible-match="CAAAGGTCAGA"/>
<motif name="MA0513.1" alt="SMAD2::SMAD3::SMAD4" width="13" best-possible-match="CTGTCTGTCACCT"/>
<motif name="MA0514.1" alt="Sox3" width="10" best-possible-match="CCTTTGTTTT"/>
<motif name="MA0515.1" alt="Sox6" width="10" best-possible-match="CCATTGTTTT"/>
<motif name="MA0516.1" alt="SP2" width="15" best-possible-match="GCCCCGCCCCCTCCC"/>
<motif name="MA0517.1" alt="STAT2::STAT1" width="15" best-possible-match="TCAGTTTCATTTTCC"/>
<motif name="MA0518.1" alt="Stat4" width="14" best-possible-match="TTTCCAGGAAATGG"/>
<motif name="MA0519.1" alt="Stat5a::Stat5b" width="11" best-possible-match="ATTTCCAAGAA"/>
<motif name="MA0520.1" alt="Stat6" width="15" best-possible-match="CATTTCCTGAGAAAT"/>
<motif name="MA0521.1" alt="Tcf12" width="11" best-possible-match="AACAGCTGCAG"/>
<motif name="MA0522.1" alt="Tcf3" width="11" best-possible-match="CACAGCTGCAG"/>
<motif name="MA0523.1" alt="TCF7L2" width="14" best-possible-match="AAAGATCAAAGGAA"/>
<motif name="MA0524.1" alt="TFAP2C" width="15" best-possible-match="CATGGCCCCAGGGCA"/>
<motif name="MA0525.1" alt="TP63" width="20" best-possible-match="AGACATGCCCAGACATGCCC"/>
<motif name="MA0526.1" alt="USF2" width="11" best-possible-match="GTCATGTGACC"/>
<motif name="MA0527.1" alt="ZBTB33" width="15" best-possible-match="CTCTCGCGAGATCTG"/>
<motif name="MA0528.1" alt="ZNF263" width="21" best-possible-match="GGAGGAGGAGGGGGAGGAGGA"/>
<motif name="MA0007.2" alt="AR" width="15" best-possible-match="AAGAACAGAATGTTC"/>
<motif name="MA0102.3" alt="CEBPA" width="11" best-possible-match="ATTGCACAATA"/>
<motif name="MA0024.2" alt="E2F1" width="11" best-possible-match="CGGGCGGGAGG"/>
<motif name="MA0154.2" alt="EBF1" width="11" best-possible-match="GTCCCCAGGGA"/>
<motif name="MA0162.2" alt="EGR1" width="14" best-possible-match="CCCCCGCCCCCGCC"/>
<motif name="MA0076.2" alt="ELK4" width="11" best-possible-match="CCACTTCCGGC"/>
<motif name="MA0258.2" alt="ESR2" width="15" best-possible-match="AGGTCACCCTGACCT"/>
<motif name="MA0098.2" alt="Ets1" width="15" best-possible-match="CCCACTTCCTGTCTC"/>
<motif name="MA0148.3" alt="FOXA1" width="15" best-possible-match="TCCATGTTTACTTTG"/>
<motif name="MA0035.3" alt="Gata1" width="11" best-possible-match="TTCTTATCTGT"/>
<motif name="MA0036.2" alt="GATA2" width="14" best-possible-match="AGATTCTTATCTGT"/>
<motif name="MA0037.2" alt="GATA3" width="8" best-possible-match="AGATAAGA"/>
<motif name="MA0114.2" alt="HNF4A" width="15" best-possible-match="CTGGACTTTGGACTC"/>
<motif name="MA0050.2" alt="IRF1" width="21" best-possible-match="TTTTACTTTCACTTTCACTTT"/>
<motif name="MA0058.2" alt="MAX" width="10" best-possible-match="AAGCACATGG"/>
<motif name="MA0052.2" alt="MEF2A" width="15" best-possible-match="AGCTAAAAATAGCAT"/>
<motif name="MA0100.2" alt="Myb" width="10" best-possible-match="CCAACTGCCA"/>
<motif name="MA0147.2" alt="Myc" width="10" best-possible-match="CCATGTGCTT"/>
<motif name="MA0104.3" alt="Mycn" width="8" best-possible-match="GCCACGTG"/>
<motif name="MA0150.2" alt="Nfe2l2" width="15" best-possible-match="CAGCATGACTCAGCA"/>
<motif name="MA0105.3" alt="NFKB1" width="11" best-possible-match="GGGAATTTCCC"/>
<motif name="MA0060.2" alt="NFYA" width="18" best-possible-match="AGAGTGCTGATTGGTCCA"/>
<motif name="MA0014.2" alt="PAX5" width="19" best-possible-match="GAGGGCAGCCAAGCGTGAC"/>
<motif name="MA0080.3" alt="Spi1" width="15" best-possible-match="AAAAAGAGGAAGTGA"/>
<motif name="MA0143.3" alt="Sox2" width="8" best-possible-match="CCTTTGTT"/>
<motif name="MA0079.3" alt="SP1" width="11" best-possible-match="GCCCCGCCCCC"/>
<motif name="MA0083.2" alt="SRF" width="18" best-possible-match="CATGCCCAAATAAGGCAA"/>
<motif name="MA0137.3" alt="STAT1" width="11" best-possible-match="TTTCCAGGAAA"/>
<motif name="MA0144.2" alt="STAT3" width="11" best-possible-match="CTTCTGGGAAA"/>
<motif name="MA0140.2" alt="TAL1::GATA1" width="18" best-possible-match="CTTATCTGTGAGGAGCAG"/>
<motif name="MA0003.2" alt="TFAP2A" width="15" best-possible-match="CATTGCCTCAGGGCA"/>
<motif name="MA0106.2" alt="TP53" width="15" best-possible-match="ACATGCCCAGACATG"/>
<motif name="MA0093.2" alt="USF1" width="11" best-possible-match="GCCACGTGACC"/>
<motif name="MA0095.2" alt="YY1" width="12" best-possible-match="CAAGATGGCGGC"/>
<motif name="MA0103.2" alt="ZEB1" width="9" best-possible-match="CCTCACCTG"/>
<motif name="MA0529.1" alt="BEAF-32" width="15" best-possible-match="TCGAAACTATCGATA"/>
<motif name="MA0216.2" alt="CAD" width="11" best-possible-match="GGCCATAAAAA"/>
<motif name="MA0530.1" alt="CNC::maf-S" width="15" best-possible-match="GATGACTCGGCAAAT"/>
<motif name="MA0531.1" alt="CTCF" width="15" best-possible-match="CCGCTAGATGGCGCC"/>
<motif name="MA0452.2" alt="KR" width="14" best-possible-match="TTTAACCCTTTTTC"/>
<motif name="MA0532.1" alt="STAT92E" width="15" best-possible-match="CGGAATTCCAGGAAA"/>
<motif name="MA0533.1" alt="SU(HW)" width="21" best-possible-match="GCCCAAAAGTATGCAACAAAT"/>
<motif name="MA0534.1" alt="EcR::usp" width="15" best-possible-match="GAGTTCATTGACCTT"/>
<motif name="MA0237.2" alt="pan" width="14" best-possible-match="TCGGCTCCTTTGAT"/>
<motif name="MA0535.1" alt="Mad" width="15" best-possible-match="CAGGCGCCGCCGCCG"/>
<motif name="MA0536.1" alt="pnr" width="11" best-possible-match="TATCGATAGTT"/>
<motif name="MA0247.2" alt="tin" width="10" best-possible-match="TTTCAAGTGG"/>
<motif name="MA0537.1" alt="BLMP-1" width="11" best-possible-match="AAAAGTGAAAA"/>
<motif name="MA0538.1" alt="DAF-12" width="15" best-possible-match="GTGTGTGTGTGCGTG"/>
<motif name="MA0540.1" alt="DPY-27" width="16" best-possible-match="TGTCCCTGCGCGATAA"/>
<motif name="MA0541.1" alt="EFL-1" width="15" best-possible-match="CGCGCGCGCGAAATT"/>
<motif name="MA0542.1" alt="ELT-3" width="8" best-possible-match="TCTTATCA"/>
<motif name="MA0543.1" alt="EOR-1" width="15" best-possible-match="AGAGAGACGCAGAGA"/>
<motif name="MA0544.1" alt="GEI-11" width="12" best-possible-match="GTGTCGGCCGCT"/>
<motif name="MA0545.1" alt="HLH-1" width="11" best-possible-match="GAACAGCTGTC"/>
<motif name="MA0546.1" alt="PHA-4" width="10" best-possible-match="AAAGTAAACA"/>
<motif name="MA0547.1" alt="SKN-1" width="15" best-possible-match="AAAATGATGACAATT"/>
<motif name="MA0548.1" alt="AGL15" width="15" best-possible-match="TTTCCATTTTTGGAA"/>
<motif name="MA0549.1" alt="BES1" width="11" best-possible-match="CGCACGTGTGA"/>
<motif name="MA0550.1" alt="BZR1" width="14" best-possible-match="AAGCCACGTGTCCA"/>
<motif name="MA0551.1" alt="HY5" width="16" best-possible-match="AATGCCACGTGGCATT"/>
<motif name="MA0552.1" alt="PIL5" width="14" best-possible-match="AGAAGGTCACGTGG"/>
<motif name="MA0553.1" alt="SMZ" width="8" best-possible-match="CCTCGTAC"/>
<motif name="MA0554.1" alt="SOC1" width="21" best-possible-match="TTTTTTTTTTTTTTTTTTTTT"/>
<motif name="MA0555.1" alt="SVP" width="20" best-possible-match="ATTACCAAAAATGGAAAGAA"/>
<motif name="MA0556.1" alt="AP3" width="15" best-possible-match="TTCCAAAAATGGAAA"/>
<motif name="MA0557.1" alt="FHY3" width="12" best-possible-match="CTCACGCGCTCA"/>
<motif name="MA0558.1" alt="FLC" width="21" best-possible-match="AATTTCCAAAAATAGAAAGAA"/>
<motif name="MA0559.1" alt="PI" width="14" best-possible-match="CCAAAAAAGGAAAA"/>
<motif name="MA0560.1" alt="PIF3" width="10" best-possible-match="AGCCACGTGA"/>
<motif name="MA0561.1" alt="PIF4" width="8" best-possible-match="CACGTGGC"/>
<motif name="MA0562.1" alt="PIF5" width="8" best-possible-match="TCACGTGG"/>
<motif name="MA0563.1" alt="SEP3" width="11" best-possible-match="TCCATTTTTGG"/>
<motif name="MA0564.1" alt="ABI3" width="9" best-possible-match="CTGCATGCA"/>
<motif name="MA0565.1" alt="FUS3" width="9" best-possible-match="CGCATGCGC"/>
<motif name="MA0566.1" alt="MYC2" width="8" best-possible-match="GCACGTGC"/>
<motif name="MA0567.1" alt="ERF1" width="8" best-possible-match="CGCCGCCA"/>
<motif name="MA0568.1" alt="MYC3" width="8" best-possible-match="GCACGTGC"/>
<motif name="MA0569.1" alt="MYC4" width="8" best-possible-match="ACACGTGC"/>
<motif name="MA0570.1" alt="ABF1" width="19" best-possible-match="GGACACGTGGCACGACGGG"/>
<motif name="MA0005.2" alt="AG" width="18" best-possible-match="ATTACCAAATTGGGTAAT"/>
<motif name="MA0571.1" alt="ANT" width="21" best-possible-match="TGGCACAGTTCCCGAGGTGAA"/>
<motif name="MA0572.1" alt="ATHB1" width="12" best-possible-match="TTCAATTATTGC"/>
<motif name="MA0110.2" alt="ATHB5" width="13" best-possible-match="GGTCCAATTATTG"/>
<motif name="MA0573.1" alt="ATHB9" width="19" best-possible-match="AATCGTAATGATTACTCGC"/>
<motif name="MA0574.1" alt="AtMYB15" width="13" best-possible-match="CGACGGTAGGTGG"/>
<motif name="MA0575.1" alt="AtMYB77" width="13" best-possible-match="AAGTGACAGTTAC"/>
<motif name="MA0576.1" alt="AtMYB84" width="13" best-possible-match="GGGGGGTAGGTGG"/>
<motif name="MA0577.1" alt="AtSPL3" width="16" best-possible-match="ATTGCCGTACTTTTTC"/>
<motif name="MA0578.1" alt="AtSPL8" width="16" best-possible-match="TTTTTTGTACCTTATT"/>
<motif name="MA0579.1" alt="CDC5" width="11" best-possible-match="GGCTCAGCGCG"/>
<motif name="MA0580.1" alt="DYT1" width="14" best-possible-match="CGTGAGTCACGTGA"/>
<motif name="MA0581.1" alt="LEC2" width="11" best-possible-match="TGCATGCACAT"/>
<motif name="MA0582.1" alt="RAV1" width="12" best-possible-match="CAGCAACAGAAA"/>
<motif name="MA0583.1" alt="RAV1" width="12" best-possible-match="ATCACCTGAGGC"/>
<motif name="MA0584.1" alt="SEP1" width="18" best-possible-match="TTTACCATATATAGAAAT"/>
<motif name="MA0001.2" alt="SEP4" width="18" best-possible-match="GTTTCCATATATAGTAAG"/>
<motif name="MA0585.1" alt="SHP1" width="18" best-possible-match="ATTGCCAAATTGGGTAAG"/>
<motif name="MA0586.1" alt="SPL14" width="19" best-possible-match="TTGCGTCCGTACAGGAGGG"/>
<motif name="MA0587.1" alt="TCP16" width="10" best-possible-match="GTGGACCCGG"/>
<motif name="MA0588.1" alt="TGA1" width="11" best-possible-match="TGGTGACGTAA"/>
<motif name="MA0589.1" alt="ZAP1" width="11" best-possible-match="TTGACCGAGCC"/>
<motif name="MA0590.1" alt="LFY" width="19" best-possible-match="TATTGACCGGCGGTCAATA"/>
<motif name="MA0591.1" alt="Bach1::Mafk" width="15" best-possible-match="AGGATGACTCAGCAC"/>
<motif name="MA0592.1" alt="ESRRA" width="11" best-possible-match="CCAAGGTCACA"/>
<motif name="MA0593.1" alt="FOXP2" width="11" best-possible-match="AAGTAAACAAA"/>
<motif name="MA0594.1" alt="Hoxa9" width="11" best-possible-match="GCCATAAATCA"/>
<motif name="MA0595.1" alt="SREBF1" width="10" best-possible-match="ATCACCCCAC"/>
<motif name="MA0596.1" alt="SREBF2" width="10" best-possible-match="ATGGGGTGAT"/>
<motif name="MA0597.1" alt="THAP1" width="9" best-possible-match="CTGCCCGCA"/>
<motif name="MA0598.1" alt="EHF" width="8" best-possible-match="CCTTCCTG"/>
<motif name="MA0599.1" alt="KLF5" width="10" best-possible-match="GCCCCGCCCC"/>
<motif name="MA0600.1" alt="RFX2" width="19" best-possible-match="GTTGCCATGGCAACCGCGG"/>
<motif name="MA0113.2" alt="NR3C1" width="15" best-possible-match="AGAACAGAATGTTCT"/>
<background source="memechip_example_output_files/background">
<value letter="A">0.256</value>
<value letter="C">0.244</value>
<value letter="G">0.244</value>
<value letter="T">0.256</value>
</background>
<cisml-file>cisml.xml</cisml-file>
</fimo>
