# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Mar 22 18:45:25 2021
# ------------------------------------------------

package:
    name: machina
    version: '1.2'
source:
    -   sha256: 2ba9116659140a28b070a5878f1956fdca2a1df5200d69c483200a22fe908350
        url: https://github.com/raphael-group/machina/archive/v1.2.zip
    -   folder: gurobi902
        sha256: 6527581aef11c3e425c52993d108861ef53ec13971d9931861bf9c88d9d111f3
        url: https://packages.gurobi.com/9.0/gurobi9.0.2_linux64.tar.gz
build:
    number: '2'
    string: h176a8bc_2
requirements:
    build:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 1_gnu
        - binutils_impl_linux-64 2.35.1 h193b22a_2
        - binutils_linux-64 2.35 h67ddf6f_30
        - bzip2 1.0.8 h7f98852_4
        - c-ares 1.17.1 h7f98852_1
        - ca-certificates 2020.12.5 ha878542_0
        - certifi 2020.12.5 py39hf3d152e_1
        - cmake 3.19.6 h3020d66_0
        - expat 2.2.10 h9c3ff4c_0
        - gcc_impl_linux-64 7.5.0 hda68d29_13
        - gcc_linux-64 7.5.0 h47867f9_30
        - gxx_impl_linux-64 7.5.0 h64c220c_13
        - gxx_linux-64 7.5.0 h555fc39_30
        - kernel-headers_linux-64 2.6.32 h77966d4_13
        - krb5 1.17.2 h926e7f8_0
        - ld_impl_linux-64 2.35.1 hea4e1c9_2
        - libcurl 7.75.0 hc4aaa36_0
        - libedit 3.1.20191231 he28a2e2_2
        - libev 4.33 h516909a_1
        - libffi 3.3 h58526e2_2
        - libgcc-ng 9.3.0 h2828fa1_18
        - libgomp 9.3.0 h2828fa1_18
        - libnghttp2 1.43.0 h812cca2_0
        - libssh2 1.9.0 ha56f1ee_6
        - libstdcxx-ng 9.3.0 h6de172a_18
        - libuv 1.41.0 h7f98852_0
        - lz4-c 1.9.3 h9c3ff4c_0
        - ncurses 6.2 h58526e2_4
        - openssl 1.1.1j h7f98852_0
        - pip 21.0.1 pyhd8ed1ab_0
        - python 3.9.2 hffdb5ce_0_cpython
        - python_abi 3.9 1_cp39
        - readline 8.0 he28a2e2_2
        - rhash 1.4.1 h7f98852_0
        - setuptools 49.6.0 py39hf3d152e_3
        - sqlite 3.34.0 h74cdb3f_0
        - sysroot_linux-64 2.12 h77966d4_13
        - tk 8.6.10 h21135ba_1
        - tzdata 2021a he74cb21_0
        - wheel 0.36.2 pyhd3deb0d_0
        - xz 5.2.5 h516909a_1
        - zlib 1.2.11 h516909a_1010
        - zstd 1.4.9 ha95c52a_0
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 1_gnu
        - boost-cpp 1.70.0 h7b93d67_3
        - bzip2 1.0.8 h7f98852_4
        - coincbc 2.10.5 hcee13e7_1
        - glpk 4.65 h9202a9a_1003
        - gmp 6.2.1 h58526e2_0
        - icu 67.1 he1b5a44_0
        - lemon 1.3.1 he9d42e9_3
        - libblas 3.9.0 8_openblas
        - libcblas 3.9.0 8_openblas
        - libgcc-ng 9.3.0 h2828fa1_18
        - libgfortran-ng 9.3.0 hff62375_18
        - libgfortran5 9.3.0 hff62375_18
        - libgomp 9.3.0 h2828fa1_18
        - liblapack 3.9.0 8_openblas
        - libopenblas 0.3.12 pthreads_h4812303_1
        - libstdcxx-ng 9.3.0 h6de172a_18
        - lz4-c 1.9.3 h9c3ff4c_0
        - xz 5.2.5 h516909a_1
        - zlib 1.2.11 h516909a_1010
        - zstd 1.4.9 ha95c52a_0
    run:
        - boost-cpp >=1.70.0,<1.70.1.0a0
        - glpk >=4.65,<4.66.0a0
        - lemon >=1.3.1,<1.3.2.0a0
        - libgcc-ng >=7.5.0
        - libstdcxx-ng >=7.5.0
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - $PREFIX/bin/cluster --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/generatemigrationtrees --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/generatemutationtrees --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh_tr --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh_ti --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh_sankoff --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/ms --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/visualizeclonetree --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/visualizemigrationgraph --help || [[ "$?" == 1 ]]
about:
    description: 'MACHINA is a computational framework for inferring migration patterns

        between a primary tumor and metastases using DNA sequencing data.

        '
    home: https://github.com/raphael-group/machina
    license: BSD-3
    summary: Metastatic And Clonal History INtegrative Analysis
extra:
    copy_test_source_files: true
    final: true
