# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jun 24 21:43:13 2020
# ------------------------------------------------

package:
    name: lumpy-sv
    version: 0.3.0
source:
    patches:
        - patch
    sha256: 8be9ce5010833021280d601e5bcb6baab3bc8be059e3524c1f4f664dee4c8e6d
    url: https://github.com/arq5x/lumpy-sv/archive/0.3.0.tar.gz
build:
    number: '4'
    string: hfbaaabd_4
requirements:
    build:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - binutils_impl_linux-64 2.34 h53a641e_5
        - binutils_linux-64 2.34 hc952b39_20
        - bzip2 1.0.8 h516909a_2
        - ca-certificates 2020.6.20 hecda079_0
        - cmake 3.17.0 h28c56e5_0
        - expat 2.2.9 he1b5a44_2
        - gcc_impl_linux-64 7.5.0 hd420e75_6
        - gcc_linux-64 7.5.0 h09487f9_20
        - gxx_impl_linux-64 7.5.0 hdf63c60_6
        - gxx_linux-64 7.5.0 h09487f9_20
        - krb5 1.17.1 hfafb76e_1
        - ld_impl_linux-64 2.34 h53a641e_5
        - libcurl 7.71.0 hcdd3856_0
        - libedit 3.1.20191231 h46ee950_0
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgomp 9.2.0 h24d8f2e_2
        - libssh2 1.9.0 hab1572f_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - libuv 1.38.0 h516909a_0
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1g h516909a_0
        - rhash 1.3.6 h14c3975_1001
        - tk 8.6.10 hed695b0_0
        - xz 5.2.5 h516909a_0
        - zlib 1.2.11 h516909a_1006
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - bzip2 1.0.8 h516909a_2
        - ca-certificates 2020.6.20 hecda079_0
        - htslib 1.10.2 h78d89cc_0
        - krb5 1.17.1 hfafb76e_1
        - ldc 1.13.0 h02c9852_1
        - libcurl 7.71.0 hcdd3856_0
        - libdeflate 1.3 h516909a_0
        - libedit 3.1.20191231 h46ee950_0
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgomp 9.2.0 h24d8f2e_2
        - libssh2 1.9.0 hab1572f_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1g h516909a_0
        - sambamba 0.6.8 h89e63da_2
        - samblaster 0.1.26 hc9558a2_0
        - samtools 1.10 h9402c20_2
        - tk 8.6.10 hed695b0_0
        - xz 5.2.5 h516909a_0
        - zlib 1.2.11 h516909a_1006
    run:
        - gawk
        - htslib >=1.10.2,<1.11.0a0
        - htslib >=1.10.2,<1.11.0a0
        - libgcc-ng >=7.5.0
        - libstdcxx-ng >=7.5.0
        - numpy
        - pysam
        - python 2.7.*
        - sambamba
        - samblaster
        - samtools
        - util-linux
test:
    commands:
        - lumpy 2>&1 | grep -q structural
        - lumpy_filter 2>&1 | grep -q lumpy_filter\:\ usage
        - lumpyexpress 2>&1 | grep -q lumpyexpress
        - extractSplitReads_BwaMem --help
about:
    home: https://github.com/arq5x/lumpy-sv
    license: MIT
    summary: a general probabilistic framework for structural variant discovery
extra:
    copy_test_source_files: true
    final: true
