# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Jul 18 01:56:11 2022
# ------------------------------------------------

package:
  name: lorikeet-genome
  version: 0.7.1
source:
  sha256: bd6e44caddb273d715683db4914e4b4e2d19e03f0f4f1d1ef9591186dbf92bae
  url: https://github.com/rhysnewell/lorikeet/archive/v0.7.1.tar.gz
build:
  number: '0'
  string: haf990a0_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_10
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.6.15 ha878542_0
    - cmake 3.23.2 h5432695_0
    - expat 2.4.8 h27087fc_0
    - gcc_impl_linux-64 10.3.0 hf2f2afa_16
    - gcc_linux-64 10.3.0 hc39de41_10
    - gxx_impl_linux-64 10.3.0 hf2f2afa_16
    - gxx_linux-64 10.3.0 h2593f52_10
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h08a2579_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libcurl 7.83.1 h2283fc2_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-devel_linux-64 10.3.0 he6cfe16_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libnghttp2 1.47.0 he49606f_0
    - libnsl 2.0.0 h7f98852_0
    - libsanitizer 10.3.0 h26c7422_16
    - libssh2 1.10.0 ha35d2d1_2
    - libstdcxx-devel_linux-64 10.3.0 he6cfe16_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libuv 1.44.2 h166bdaf_0
    - libzlib 1.2.12 h166bdaf_2
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.5 h166bdaf_0
    - perl 5.32.1 2_h7f98852_perl5
    - pkg-config 0.29.2 h36c2ea0_1008
    - rhash 1.4.3 h166bdaf_0
    - rust 1.62.0 h30be4a0_0
    - rust-std-x86_64-unknown-linux-gnu 1.62.0 hc1431ca_0
    - sysroot_linux-64 2.12 he073ed8_15
    - xz 5.2.5 h516909a_1
    - zlib 1.2.12 h166bdaf_2
    - zstd 1.5.2 h8a70e8d_2
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.6.15 ha878542_0
    - gsl 2.7 he838d99_0
    - htslib 1.15.1 h9753748_0
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h3790be6_0
    - libblas 3.8.0 11_h6e990d7_netlib
    - libcblas 3.8.0 11_h6e990d7_netlib
    - libcurl 7.83.1 h7bff187_0
    - libdeflate 1.10 h7f98852_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgfortran-ng 7.5.0 h14aa051_20
    - libgfortran4 7.5.0 h14aa051_20
    - libgomp 12.1.0 h8d9b700_16
    - libnghttp2 1.47.0 h727a467_0
    - libssh2 1.10.0 ha56f1ee_2
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libzlib 1.2.12 h166bdaf_2
    - ncurses 6.3 h27087fc_1
    - openssl 1.1.1q h166bdaf_0
    - xz 5.2.5 h516909a_1
    - zlib 1.2.12 h166bdaf_2
  run:
    - bcftools
    - bwa >=0.7.17
    - dashing
    - fastani
    - gsl >=2.7,<2.8.0a0
    - htslib >=1.15.1,<1.16.0a0
    - htslib >=1.15.1,<1.16.0a0
    - libblas >=3.8.0,<4.0a0
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - libzlib >=1.2.12,<1.3.0a0
    - matplotlib-base
    - minimap2
    - ngmlr
    - numpy
    - openssl >=1.1.1q,<1.1.2a
    - parallel
    - prodigal
    - pysam >=0.16
    - python >=3.9
    - samtools >=1.9
    - scikit-bio
    - scikit-learn
    - seaborn
    - starcode
    - svim
    - vt
    - zlib >=1.2.12,<1.3.0a0
test:
  commands:
    - lorikeet --version | grep '0.7.1'
about:
  description: Lorikeet aims to call variants in metagenomes using local reassembly
    of haplotypes.
  doc_url: https://rhysnewell.github.io/Lorikeet/
  home: https://github.com/rhysnewell/Lorikeet
  license: GPL3
  license_file: LICENSE
  summary: Metagenomic Variant Calling & Diversity Analysis
extra:
  copy_test_source_files: true
  final: true
