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## W

waitForJobsOver() - Method in interface org.irisa.genouest.logol.dispatcher.JobManager
waitForJobsOver() - Method in class org.irisa.genouest.logol.dispatcher.LocalJobManager
  Not applicable when serialized, return immediatly
waitForJobsOver() - Method in class org.irisa.genouest.logol.dispatcher.SGEJobManager
weight() - Method in class org.irisa.genouest.logol.parser.logolParser
WHITESPACE - Static variable in class org.irisa.genouest.logol.parser.logolLexer
WHITESPACE - Static variable in class org.irisa.genouest.logol.parser.logolParser
workingDir - Static variable in class org.irisa.genouest.logol.Treatment
writeFasta(OutputStream, SequenceIterator, Namespace, FastaHeader, int) - Method in class org.irisa.genouest.logol.utils.converter.FastaConverter
  Writes `Sequence`s from a `SequenceIterator` to an `OutputStream` in Fasta Format.
writeFasta(OutputStream, Sequence, Namespace) - Method in class org.irisa.genouest.logol.utils.converter.FastaConverter
  Writes a single `Sequence` to an `OutputStream` in Fasta format.
writeFasta(OutputStream, SequenceIterator, Namespace, FastaHeader, int) - Static method in class org.irisa.genouest.logol.utils.FastaConverter
  Deprecated. Writes `Sequence`s from a `SequenceIterator` to an `OutputStream` in Fasta Format.
writeFasta(OutputStream, Sequence, Namespace) - Static method in class org.irisa.genouest.logol.utils.FastaConverter
  Deprecated. Writes a single `Sequence` to an `OutputStream` in Fasta format.
writeFasta(BufferedOutputStream, Sequence) - Static method in class org.irisa.genouest.logol.utils.MySequence
writeGFF(String, GFFEntrySet) - Method in class org.irisa.genouest.logol.utils.converter.GFFConverter

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