function:
  -
    input:
      -
        dataType:
          term: "RNA sequence"
          uri: "http://edamontology.org/data_3495"
        dataFormat:
          -
            term: "FASTA"
            uri: "http://edamontology.org/format_1929"
          -
            term: "FASTA-like (text)"
            uri: "http://edamontology.org/format_2200"
    output:
      -
        dataType:
          term: "Alignment"
          uri: "http://edamontology.org/data_1916"
        dataFormat:
          -
            term: "ClustalW format"
            uri: "http://edamontology.org/format_1982"
          -
            term: "FASTA"
            uri: "http://edamontology.org/format_1929"
          -
            term: "PDF"
            uri: "http://edamontology.org/format_3508"
      -
        dataType:
          term: "Phylogenetic tree"
          uri: "http://edamontology.org/data_0872"
        dataFormat:
          -
            term: "newick"
            uri: "http://edamontology.org/format_1910"
      -
        dataType:
          term: "RNA structure"
          uri: "http://edamontology.org/data_1465"
        dataFormat:
          -
            term: "EPS"
            uri: "http://edamontology.org/format_3466"
    functionName:
      -
        term: "Structure-based sequence alignment"
        uri: "http://edamontology.org/operation_0294"
    functionDescription: "LocARNA simultaneously folds and aligns input sequences. Specifications of additional constraints or fixed input structures are possible."
maturity: "Stable"
additionDate: "2016-01-20T14:57:08Z"
cost: "Free"
description: "Structure-based alignment of RNAs"
credits:
  creditsInstitution:
    - "University Freiburg"
  creditsDeveloper:
    - "Sebastian Will"
resourceType:
  - "Tool"
accessibility: "Public"
contact:
  -
    contactEmail: "rna@rna.informatik.uni-freiburg.de"
    contactName: "Rolf Backofen"
    contactRole:
      - "Developer"
  -
    contactEmail: "will@bioinf.uni-leipzig.de"
    contactName: "Sebastian Will"
    contactRole:
      - "Developer"
topic:
  -
    term: "Sequence comparison"
    uri: "http://edamontology.org/topic_0159"
affiliation: "rnateam"
version: "1.8.7"
publications:
  publicationsPrimaryID: "17432929"
interface:
  -
    interfaceType: "Command line"
homepage: "http://www.bioinf.uni-freiburg.de/Software/LocARNA/"
id: 42667
name: "LocARNA"
