etc/conda/activate.d/libopenms.sh
etc/conda/deactivate.d/libopenms.sh
include/OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h
include/OpenMS/ANALYSIS/DECHARGING/ILPDCWrapper.h
include/OpenMS/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.h
include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentification.h
include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h
include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationCID.h
include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h
include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h
include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h
include/OpenMS/ANALYSIS/DENOVO/DeNovoAlgorithm.h
include/OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h
include/OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h
include/OpenMS/ANALYSIS/DENOVO/DeNovoPostScoring.h
include/OpenMS/ANALYSIS/ID/AScore.h
include/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h
include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h
include/OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h
include/OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmAverage.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmBest.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmRanks.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h
include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmWorst.h
include/OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h
include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h
include/OpenMS/ANALYSIS/ID/FIAMSScheduler.h
include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h
include/OpenMS/ANALYSIS/ID/HiddenMarkovModel.h
include/OpenMS/ANALYSIS/ID/IDBoostGraph.h
include/OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h
include/OpenMS/ANALYSIS/ID/IDDecoyProbability.h
include/OpenMS/ANALYSIS/ID/IDMapper.h
include/OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h
include/OpenMS/ANALYSIS/ID/IDRipper.h
include/OpenMS/ANALYSIS/ID/IDScoreGetterSetter.h
include/OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h
include/OpenMS/ANALYSIS/ID/MessagePasserFactory.h
include/OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h
include/OpenMS/ANALYSIS/ID/PeptideIndexing.h
include/OpenMS/ANALYSIS/ID/PeptideProteinResolution.h
include/OpenMS/ANALYSIS/ID/PercolatorFeatureSetHelper.h
include/OpenMS/ANALYSIS/ID/PrecursorPurity.h
include/OpenMS/ANALYSIS/ID/ProtonDistributionModel.h
include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h
include/OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h
include/OpenMS/ANALYSIS/ID/SiriusMSConverter.h
include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h
include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h
include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.h
include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.h
include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.h
include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h
include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h
include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h
include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h
include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.h
include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.h
include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h
include/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.h
include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h
include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.h
include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.h
include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h
include/OpenMS/ANALYSIS/MAPMATCHING/SimplePairFinder.h
include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h
include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h
include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModel.h
include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelBSpline.h
include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.h
include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelLinear.h
include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelLowess.h
include/OpenMS/ANALYSIS/MRM/MRMFragmentSelection.h
include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h
include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h
include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.h
include/OpenMS/ANALYSIS/OPENSWATH/ConfidenceScoring.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h
include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.h
include/OpenMS/ANALYSIS/OPENSWATH/DIAHelper.h
include/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h
include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h
include/OpenMS/ANALYSIS/OPENSWATH/IonMobilityScoring.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMAssay.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMDecoy.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFilter.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMFeaturePicker.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMIonSeries.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMRTNormalizer.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMScoring.h
include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h
include/OpenMS/ANALYSIS/OPENSWATH/MasstraceCorrelator.h
include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h
include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.h
include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScores.h
include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h
include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.h
include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h
include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h
include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h
include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h
include/OpenMS/ANALYSIS/OPENSWATH/SpectrumAddition.h
include/OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h
include/OpenMS/ANALYSIS/OPENSWATH/SwathQC.h
include/OpenMS/ANALYSIS/OPENSWATH/SwathWindowLoader.h
include/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h
include/OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h
include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h
include/OpenMS/ANALYSIS/PIP/LocalLinearMap.h
include/OpenMS/ANALYSIS/PIP/PeakIntensityPredictor.h
include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitation.h
include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.h
include/OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h
include/OpenMS/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.h
include/OpenMS/ANALYSIS/QUANTITATION/IsobaricNormalizer.h
include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h
include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.h
include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h
include/OpenMS/ANALYSIS/QUANTITATION/IsotopeLabelingMDVs.h
include/OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h
include/OpenMS/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.h
include/OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h
include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h
include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureNode.h
include/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h
include/OpenMS/ANALYSIS/QUANTITATION/ProteinInference.h
include/OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h
include/OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h
include/OpenMS/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.h
include/OpenMS/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.h
include/OpenMS/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.h
include/OpenMS/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.h
include/OpenMS/ANALYSIS/RNPXL/HyperScore.h
include/OpenMS/ANALYSIS/RNPXL/MorpheusScore.h
include/OpenMS/ANALYSIS/RNPXL/PScore.h
include/OpenMS/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.h
include/OpenMS/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.h
include/OpenMS/ANALYSIS/RNPXL/RNPxlModificationsGenerator.h
include/OpenMS/ANALYSIS/RNPXL/RNPxlReport.h
include/OpenMS/ANALYSIS/SEQUENCE/NeedlemanWunsch.h
include/OpenMS/ANALYSIS/SVM/SVMWrapper.h
include/OpenMS/ANALYSIS/SVM/SimpleSVM.h
include/OpenMS/ANALYSIS/TARGETED/IncludeExcludeTarget.h
include/OpenMS/ANALYSIS/TARGETED/InclusionExclusionList.h
include/OpenMS/ANALYSIS/TARGETED/MRMMapping.h
include/OpenMS/ANALYSIS/TARGETED/MetaboTargetedAssay.h
include/OpenMS/ANALYSIS/TARGETED/MetaboTargetedTargetDecoy.h
include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h
include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h
include/OpenMS/ANALYSIS/TARGETED/PSProteinInference.h
include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelection.h
include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h
include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h
include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h
include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h
include/OpenMS/ANALYSIS/XLMS/OPXLHelper.h
include/OpenMS/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.h
include/OpenMS/ANALYSIS/XLMS/OpenPepXLAlgorithm.h
include/OpenMS/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.h
include/OpenMS/ANALYSIS/XLMS/XFDRAlgorithm.h
include/OpenMS/ANALYSIS/XLMS/XQuestScores.h
include/OpenMS/APPLICATIONS/ConsoleUtils.h
include/OpenMS/APPLICATIONS/INIUpdater.h
include/OpenMS/APPLICATIONS/MapAlignerBase.h
include/OpenMS/APPLICATIONS/OpenSwathBase.h
include/OpenMS/APPLICATIONS/ParameterInformation.h
include/OpenMS/APPLICATIONS/SearchEngineBase.h
include/OpenMS/APPLICATIONS/TOPPBase.h
include/OpenMS/APPLICATIONS/ToolHandler.h
include/OpenMS/CHEMISTRY/AAIndex.h
include/OpenMS/CHEMISTRY/AASequence.h
include/OpenMS/CHEMISTRY/AdductInfo.h
include/OpenMS/CHEMISTRY/CrossLinksDB.h
include/OpenMS/CHEMISTRY/DecoyGenerator.h
include/OpenMS/CHEMISTRY/DigestionEnzyme.h
include/OpenMS/CHEMISTRY/DigestionEnzymeDB.h
include/OpenMS/CHEMISTRY/DigestionEnzymeProtein.h
include/OpenMS/CHEMISTRY/DigestionEnzymeRNA.h
include/OpenMS/CHEMISTRY/Element.h
include/OpenMS/CHEMISTRY/ElementDB.h
include/OpenMS/CHEMISTRY/EmpiricalFormula.h
include/OpenMS/CHEMISTRY/EnzymaticDigestion.h
include/OpenMS/CHEMISTRY/EnzymaticDigestionLogModel.h
include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.h
include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.h
include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.h
include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h
include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetParser.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IntegerMassDecomposer.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/MassDecomposer.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.h
include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h
include/OpenMS/CHEMISTRY/ModificationDefinition.h
include/OpenMS/CHEMISTRY/ModificationDefinitionsSet.h
include/OpenMS/CHEMISTRY/ModificationsDB.h
include/OpenMS/CHEMISTRY/ModifiedNASequenceGenerator.h
include/OpenMS/CHEMISTRY/ModifiedPeptideGenerator.h
include/OpenMS/CHEMISTRY/NASequence.h
include/OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h
include/OpenMS/CHEMISTRY/ProteaseDB.h
include/OpenMS/CHEMISTRY/ProteaseDigestion.h
include/OpenMS/CHEMISTRY/RNaseDB.h
include/OpenMS/CHEMISTRY/RNaseDigestion.h
include/OpenMS/CHEMISTRY/Residue.h
include/OpenMS/CHEMISTRY/ResidueDB.h
include/OpenMS/CHEMISTRY/ResidueModification.h
include/OpenMS/CHEMISTRY/Ribonucleotide.h
include/OpenMS/CHEMISTRY/RibonucleotideDB.h
include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h
include/OpenMS/CHEMISTRY/SpectrumAnnotator.h
include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h
include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h
include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h
include/OpenMS/CHEMISTRY/Tagger.h
include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h
include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h
include/OpenMS/CHEMISTRY/WeightWrapper.h
include/OpenMS/COMPARISON/CLUSTERING/AverageLinkage.h
include/OpenMS/COMPARISON/CLUSTERING/ClusterAnalyzer.h
include/OpenMS/COMPARISON/CLUSTERING/ClusterFunctor.h
include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h
include/OpenMS/COMPARISON/CLUSTERING/ClusteringGrid.h
include/OpenMS/COMPARISON/CLUSTERING/CompleteLinkage.h
include/OpenMS/COMPARISON/CLUSTERING/EuclideanSimilarity.h
include/OpenMS/COMPARISON/CLUSTERING/GridBasedCluster.h
include/OpenMS/COMPARISON/CLUSTERING/GridBasedClustering.h
include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h
include/OpenMS/COMPARISON/CLUSTERING/SingleLinkage.h
include/OpenMS/COMPARISON/SPECTRA/BinnedSharedPeakCount.h
include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h
include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h
include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h
include/OpenMS/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.h
include/OpenMS/COMPARISON/SPECTRA/PeakAlignment.h
include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h
include/OpenMS/COMPARISON/SPECTRA/SpectraSTSimilarityScore.h
include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h
include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h
include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h
include/OpenMS/COMPARISON/SPECTRA/SpectrumPrecursorComparator.h
include/OpenMS/COMPARISON/SPECTRA/SteinScottImproveScore.h
include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h
include/OpenMS/CONCEPT/ClassTest.h
include/OpenMS/CONCEPT/Constants.h
include/OpenMS/CONCEPT/EnumHelpers.h
include/OpenMS/CONCEPT/Exception.h
include/OpenMS/CONCEPT/Factory.h
include/OpenMS/CONCEPT/FactoryBase.h
include/OpenMS/CONCEPT/FuzzyStringComparator.h
include/OpenMS/CONCEPT/GlobalExceptionHandler.h
include/OpenMS/CONCEPT/Helpers.h
include/OpenMS/CONCEPT/Init.h
include/OpenMS/CONCEPT/LogConfigHandler.h
include/OpenMS/CONCEPT/LogStream.h
include/OpenMS/CONCEPT/Macros.h
include/OpenMS/CONCEPT/MacrosTest.h
include/OpenMS/CONCEPT/PrecisionWrapper.h
include/OpenMS/CONCEPT/ProgressLogger.h
include/OpenMS/CONCEPT/RAIICleanup.h
include/OpenMS/CONCEPT/SingletonRegistry.h
include/OpenMS/CONCEPT/StreamHandler.h
include/OpenMS/CONCEPT/TypeAsString.h
include/OpenMS/CONCEPT/Types.h
include/OpenMS/CONCEPT/UniqueIdGenerator.h
include/OpenMS/CONCEPT/UniqueIdIndexer.h
include/OpenMS/CONCEPT/UniqueIdInterface.h
include/OpenMS/CONCEPT/VersionInfo.h
include/OpenMS/DATASTRUCTURES/Adduct.h
include/OpenMS/DATASTRUCTURES/BinaryTreeNode.h
include/OpenMS/DATASTRUCTURES/CVMappingRule.h
include/OpenMS/DATASTRUCTURES/CVMappingTerm.h
include/OpenMS/DATASTRUCTURES/CVMappings.h
include/OpenMS/DATASTRUCTURES/CVReference.h
include/OpenMS/DATASTRUCTURES/CalibrationData.h
include/OpenMS/DATASTRUCTURES/ChargePair.h
include/OpenMS/DATASTRUCTURES/Compomer.h
include/OpenMS/DATASTRUCTURES/ConstRefVector.h
include/OpenMS/DATASTRUCTURES/ConvexHull2D.h
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include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h
include/OpenMS/DATASTRUCTURES/DistanceMatrix.h
include/OpenMS/DATASTRUCTURES/FASTAContainer.h
include/OpenMS/DATASTRUCTURES/FlagSet.h
include/OpenMS/DATASTRUCTURES/GridFeature.h
include/OpenMS/DATASTRUCTURES/IsotopeCluster.h
include/OpenMS/DATASTRUCTURES/KDTree.h
include/OpenMS/DATASTRUCTURES/LPWrapper.h
include/OpenMS/DATASTRUCTURES/ListUtils.h
include/OpenMS/DATASTRUCTURES/ListUtilsIO.h
include/OpenMS/DATASTRUCTURES/Map.h
include/OpenMS/DATASTRUCTURES/MassExplainer.h
include/OpenMS/DATASTRUCTURES/MatchedIterator.h
include/OpenMS/DATASTRUCTURES/Matrix.h
include/OpenMS/DATASTRUCTURES/OSWData.h
include/OpenMS/DATASTRUCTURES/Param.h
include/OpenMS/DATASTRUCTURES/ParamValue.h
include/OpenMS/DATASTRUCTURES/QTCluster.h
include/OpenMS/DATASTRUCTURES/String.h
include/OpenMS/DATASTRUCTURES/StringListUtils.h
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include/OpenMS/DATASTRUCTURES/StringUtilsSimple.h
include/OpenMS/DATASTRUCTURES/StringView.h
include/OpenMS/DATASTRUCTURES/ToolDescription.h
include/OpenMS/DATASTRUCTURES/Utils/MapUtilities.h
include/OpenMS/DATASTRUCTURES/Utils/MatrixUtils.h
include/OpenMS/FILTERING/BASELINE/MorphologicalFilter.h
include/OpenMS/FILTERING/CALIBRATION/InternalCalibration.h
include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h
include/OpenMS/FILTERING/CALIBRATION/PrecursorCorrection.h
include/OpenMS/FILTERING/CALIBRATION/TOFCalibration.h
include/OpenMS/FILTERING/DATAREDUCTION/DataFilters.h
include/OpenMS/FILTERING/DATAREDUCTION/Deisotoper.h
include/OpenMS/FILTERING/DATAREDUCTION/ElutionPeakDetection.h
include/OpenMS/FILTERING/DATAREDUCTION/FeatureFindingMetabo.h
include/OpenMS/FILTERING/DATAREDUCTION/IsotopeDistributionCache.h
include/OpenMS/FILTERING/DATAREDUCTION/MassTraceDetection.h
include/OpenMS/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.h
include/OpenMS/FILTERING/DATAREDUCTION/SplinePackage.h
include/OpenMS/FILTERING/ID/IDFilter.h
include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h
include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h
include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h
include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.h
include/OpenMS/FILTERING/SMOOTHING/FastLowessSmoothing.h
include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h
include/OpenMS/FILTERING/SMOOTHING/GaussFilterAlgorithm.h
include/OpenMS/FILTERING/SMOOTHING/LowessSmoothing.h
include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h
include/OpenMS/FILTERING/TRANSFORMERS/BernNorm.h
include/OpenMS/FILTERING/TRANSFORMERS/ComplementFilter.h
include/OpenMS/FILTERING/TRANSFORMERS/ComplementMarker.h
include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h
include/OpenMS/FILTERING/TRANSFORMERS/GoodDiffFilter.h
include/OpenMS/FILTERING/TRANSFORMERS/IntensityBalanceFilter.h
include/OpenMS/FILTERING/TRANSFORMERS/IsotopeDiffFilter.h
include/OpenMS/FILTERING/TRANSFORMERS/IsotopeMarker.h
include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h
include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h
include/OpenMS/FILTERING/TRANSFORMERS/MarkerMower.h
include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h
include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.h
include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossMarker.h
include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h
include/OpenMS/FILTERING/TRANSFORMERS/ParentPeakMower.h
include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h
include/OpenMS/FILTERING/TRANSFORMERS/Scaler.h
include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h
include/OpenMS/FILTERING/TRANSFORMERS/SqrtMower.h
include/OpenMS/FILTERING/TRANSFORMERS/TICFilter.h
include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h
include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h
include/OpenMS/FORMAT/AbsoluteQuantitationMethodFile.h
include/OpenMS/FORMAT/AbsoluteQuantitationStandardsFile.h
include/OpenMS/FORMAT/Base64.h
include/OpenMS/FORMAT/Bzip2Ifstream.h
include/OpenMS/FORMAT/Bzip2InputStream.h
include/OpenMS/FORMAT/CVMappingFile.h
include/OpenMS/FORMAT/CachedMzML.h
include/OpenMS/FORMAT/ChromeleonFile.h
include/OpenMS/FORMAT/CompressedInputSource.h
include/OpenMS/FORMAT/ConsensusXMLFile.h
include/OpenMS/FORMAT/ControlledVocabulary.h
include/OpenMS/FORMAT/CsvFile.h
include/OpenMS/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.h
include/OpenMS/FORMAT/DATAACCESS/MSDataAggregatingConsumer.h
include/OpenMS/FORMAT/DATAACCESS/MSDataCachedConsumer.h
include/OpenMS/FORMAT/DATAACCESS/MSDataChainingConsumer.h
include/OpenMS/FORMAT/DATAACCESS/MSDataSqlConsumer.h
include/OpenMS/FORMAT/DATAACCESS/MSDataStoringConsumer.h
include/OpenMS/FORMAT/DATAACCESS/MSDataTransformingConsumer.h
include/OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h
include/OpenMS/FORMAT/DATAACCESS/NoopMSDataConsumer.h
include/OpenMS/FORMAT/DATAACCESS/SiriusFragmentAnnotation.h
include/OpenMS/FORMAT/DATAACCESS/SiriusMzTabWriter.h
include/OpenMS/FORMAT/DATAACCESS/SwathFileConsumer.h
include/OpenMS/FORMAT/DTA2DFile.h
include/OpenMS/FORMAT/DTAFile.h
include/OpenMS/FORMAT/EDTAFile.h
include/OpenMS/FORMAT/ExperimentalDesignFile.h
include/OpenMS/FORMAT/FASTAFile.h
include/OpenMS/FORMAT/FeatureXMLFile.h
include/OpenMS/FORMAT/FileHandler.h
include/OpenMS/FORMAT/FileTypes.h
include/OpenMS/FORMAT/GNPSMGFFile.h
include/OpenMS/FORMAT/GzipIfstream.h
include/OpenMS/FORMAT/GzipInputStream.h
include/OpenMS/FORMAT/HANDLERS/AcqusHandler.h
include/OpenMS/FORMAT/HANDLERS/CachedMzMLHandler.h
include/OpenMS/FORMAT/HANDLERS/FidHandler.h
include/OpenMS/FORMAT/HANDLERS/IndexedMzMLDecoder.h
include/OpenMS/FORMAT/HANDLERS/IndexedMzMLHandler.h
include/OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h
include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h
include/OpenMS/FORMAT/HANDLERS/MzIdentMLDOMHandler.h
include/OpenMS/FORMAT/HANDLERS/MzIdentMLHandler.h
include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h
include/OpenMS/FORMAT/HANDLERS/MzMLHandlerHelper.h
include/OpenMS/FORMAT/HANDLERS/MzMLSpectrumDecoder.h
include/OpenMS/FORMAT/HANDLERS/MzMLSqliteHandler.h
include/OpenMS/FORMAT/HANDLERS/MzMLSqliteSwathHandler.h
include/OpenMS/FORMAT/HANDLERS/MzQuantMLHandler.h
include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h
include/OpenMS/FORMAT/HANDLERS/PTMXMLHandler.h
include/OpenMS/FORMAT/HANDLERS/ParamXMLHandler.h
include/OpenMS/FORMAT/HANDLERS/ToolDescriptionHandler.h
include/OpenMS/FORMAT/HANDLERS/TraMLHandler.h
include/OpenMS/FORMAT/HANDLERS/UnimodXMLHandler.h
include/OpenMS/FORMAT/HANDLERS/XMLHandler.h
include/OpenMS/FORMAT/HANDLERS/XQuestResultXMLHandler.h
include/OpenMS/FORMAT/HDF5Connector.h
include/OpenMS/FORMAT/IBSpectraFile.h
include/OpenMS/FORMAT/IdXMLFile.h
include/OpenMS/FORMAT/IndexedMzMLFileLoader.h
include/OpenMS/FORMAT/InspectInfile.h
include/OpenMS/FORMAT/InspectOutfile.h
include/OpenMS/FORMAT/KroenikFile.h
include/OpenMS/FORMAT/LibSVMEncoder.h
include/OpenMS/FORMAT/MRMFeaturePickerFile.h
include/OpenMS/FORMAT/MRMFeatureQCFile.h
include/OpenMS/FORMAT/MS2File.h
include/OpenMS/FORMAT/MSNumpressCoder.h
include/OpenMS/FORMAT/MSPFile.h
include/OpenMS/FORMAT/MSPGenericFile.h
include/OpenMS/FORMAT/MSstatsFile.h
include/OpenMS/FORMAT/MascotGenericFile.h
include/OpenMS/FORMAT/MascotInfile.h
include/OpenMS/FORMAT/MascotRemoteQuery.h
include/OpenMS/FORMAT/MascotXMLFile.h
include/OpenMS/FORMAT/MsInspectFile.h
include/OpenMS/FORMAT/MzDataFile.h
include/OpenMS/FORMAT/MzIdentMLFile.h
include/OpenMS/FORMAT/MzMLFile.h
include/OpenMS/FORMAT/MzQCFile.h
include/OpenMS/FORMAT/MzQuantMLFile.h
include/OpenMS/FORMAT/MzTab.h
include/OpenMS/FORMAT/MzTabBase.h
include/OpenMS/FORMAT/MzTabFile.h
include/OpenMS/FORMAT/MzTabM.h
include/OpenMS/FORMAT/MzTabMFile.h
include/OpenMS/FORMAT/MzXMLFile.h
include/OpenMS/FORMAT/OMSFile.h
include/OpenMS/FORMAT/OMSFileLoad.h
include/OpenMS/FORMAT/OMSFileStore.h
include/OpenMS/FORMAT/OMSSACSVFile.h
include/OpenMS/FORMAT/OMSSAXMLFile.h
include/OpenMS/FORMAT/OPTIONS/FeatureFileOptions.h
include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h
include/OpenMS/FORMAT/OSWFile.h
include/OpenMS/FORMAT/PTMXMLFile.h
include/OpenMS/FORMAT/ParamCTDFile.h
include/OpenMS/FORMAT/ParamXMLFile.h
include/OpenMS/FORMAT/PeakTypeEstimator.h
include/OpenMS/FORMAT/PepNovoInfile.h
include/OpenMS/FORMAT/PepNovoOutfile.h
include/OpenMS/FORMAT/PepXMLFile.h
include/OpenMS/FORMAT/PepXMLFileMascot.h
include/OpenMS/FORMAT/PercolatorInfile.h
include/OpenMS/FORMAT/PercolatorOutfile.h
include/OpenMS/FORMAT/ProtXMLFile.h
include/OpenMS/FORMAT/QcMLFile.h
include/OpenMS/FORMAT/SVOutStream.h
include/OpenMS/FORMAT/SequestInfile.h
include/OpenMS/FORMAT/SequestOutfile.h
include/OpenMS/FORMAT/SpecArrayFile.h
include/OpenMS/FORMAT/SqMassFile.h
include/OpenMS/FORMAT/SqliteConnector.h
include/OpenMS/FORMAT/SwathFile.h
include/OpenMS/FORMAT/TextFile.h
include/OpenMS/FORMAT/ToolDescriptionFile.h
include/OpenMS/FORMAT/TraMLFile.h
include/OpenMS/FORMAT/TransformationXMLFile.h
include/OpenMS/FORMAT/TriqlerFile.h
include/OpenMS/FORMAT/UnimodXMLFile.h
include/OpenMS/FORMAT/VALIDATORS/MzDataValidator.h
include/OpenMS/FORMAT/VALIDATORS/MzIdentMLValidator.h
include/OpenMS/FORMAT/VALIDATORS/MzMLValidator.h
include/OpenMS/FORMAT/VALIDATORS/MzQuantMLValidator.h
include/OpenMS/FORMAT/VALIDATORS/SemanticValidator.h
include/OpenMS/FORMAT/VALIDATORS/TraMLValidator.h
include/OpenMS/FORMAT/VALIDATORS/XMLValidator.h
include/OpenMS/FORMAT/XMLFile.h
include/OpenMS/FORMAT/XMassFile.h
include/OpenMS/FORMAT/XQuestResultXMLFile.h
include/OpenMS/FORMAT/XTandemInfile.h
include/OpenMS/FORMAT/XTandemXMLFile.h
include/OpenMS/FORMAT/ZlibCompression.h
include/OpenMS/INTERFACES/DataStructures.h
include/OpenMS/INTERFACES/IMSDataConsumer.h
include/OpenMS/INTERFACES/ISpectrumAccess.h
include/OpenMS/IONMOBILITY/FAIMSHelper.h
include/OpenMS/IONMOBILITY/IMDataConverter.h
include/OpenMS/IONMOBILITY/IMTypes.h
include/OpenMS/KERNEL/AreaIterator.h
include/OpenMS/KERNEL/BaseFeature.h
include/OpenMS/KERNEL/ChromatogramPeak.h
include/OpenMS/KERNEL/ChromatogramTools.h
include/OpenMS/KERNEL/ConsensusFeature.h
include/OpenMS/KERNEL/ConsensusMap.h
include/OpenMS/KERNEL/ConversionHelper.h
include/OpenMS/KERNEL/DPeak.h
include/OpenMS/KERNEL/Feature.h
include/OpenMS/KERNEL/FeatureHandle.h
include/OpenMS/KERNEL/FeatureMap.h
include/OpenMS/KERNEL/MRMFeature.h
include/OpenMS/KERNEL/MRMTransitionGroup.h
include/OpenMS/KERNEL/MSChromatogram.h
include/OpenMS/KERNEL/MSExperiment.h
include/OpenMS/KERNEL/MSSpectrum.h
include/OpenMS/KERNEL/MassTrace.h
include/OpenMS/KERNEL/OnDiscMSExperiment.h
include/OpenMS/KERNEL/Peak1D.h
include/OpenMS/KERNEL/Peak2D.h
include/OpenMS/KERNEL/PeakIndex.h
include/OpenMS/KERNEL/RangeManager.h
include/OpenMS/KERNEL/RangeUtils.h
include/OpenMS/KERNEL/RichPeak2D.h
include/OpenMS/KERNEL/SpectrumHelper.h
include/OpenMS/KERNEL/StandardDeclarations.h
include/OpenMS/KERNEL/StandardTypes.h
include/OpenMS/MATH/MISC/BSpline2d.h
include/OpenMS/MATH/MISC/BilinearInterpolation.h
include/OpenMS/MATH/MISC/CubicSpline2d.h
include/OpenMS/MATH/MISC/EmgGradientDescent.h
include/OpenMS/MATH/MISC/GridSearch.h
include/OpenMS/MATH/MISC/LinearInterpolation.h
include/OpenMS/MATH/MISC/MSNumpress.h
include/OpenMS/MATH/MISC/MathFunctions.h
include/OpenMS/MATH/MISC/NNLS/NNLS.h
include/OpenMS/MATH/MISC/NonNegativeLeastSquaresSolver.h
include/OpenMS/MATH/MISC/RANSAC.h
include/OpenMS/MATH/MISC/RANSACModel.h
include/OpenMS/MATH/MISC/RANSACModelLinear.h
include/OpenMS/MATH/MISC/RANSACModelQuadratic.h
include/OpenMS/MATH/MISC/SplineBisection.h
include/OpenMS/MATH/STATISTICS/AsymmetricStatistics.h
include/OpenMS/MATH/STATISTICS/AveragePosition.h
include/OpenMS/MATH/STATISTICS/BasicStatistics.h
include/OpenMS/MATH/STATISTICS/GammaDistributionFitter.h
include/OpenMS/MATH/STATISTICS/GaussFitter.h
include/OpenMS/MATH/STATISTICS/GumbelDistributionFitter.h
include/OpenMS/MATH/STATISTICS/GumbelMaxLikelihoodFitter.h
include/OpenMS/MATH/STATISTICS/Histogram.h
include/OpenMS/MATH/STATISTICS/LinearRegression.h
include/OpenMS/MATH/STATISTICS/LinearRegressionWithoutIntercept.h
include/OpenMS/MATH/STATISTICS/PosteriorErrorProbabilityModel.h
include/OpenMS/MATH/STATISTICS/QuadraticRegression.h
include/OpenMS/MATH/STATISTICS/ROCCurve.h
include/OpenMS/MATH/STATISTICS/StatisticFunctions.h
include/OpenMS/METADATA/AbsoluteQuantitationStandards.h
include/OpenMS/METADATA/Acquisition.h
include/OpenMS/METADATA/AcquisitionInfo.h
include/OpenMS/METADATA/CVTerm.h
include/OpenMS/METADATA/CVTermList.h
include/OpenMS/METADATA/CVTermListInterface.h
include/OpenMS/METADATA/ChromatogramSettings.h
include/OpenMS/METADATA/ContactPerson.h
include/OpenMS/METADATA/DataArrays.h
include/OpenMS/METADATA/DataProcessing.h
include/OpenMS/METADATA/Digestion.h
include/OpenMS/METADATA/DocumentIDTagger.h
include/OpenMS/METADATA/DocumentIdentifier.h
include/OpenMS/METADATA/ExperimentalDesign.h
include/OpenMS/METADATA/ExperimentalSettings.h
include/OpenMS/METADATA/Gradient.h
include/OpenMS/METADATA/HPLC.h
include/OpenMS/METADATA/ID/AppliedProcessingStep.h
include/OpenMS/METADATA/ID/DBSearchParam.h
include/OpenMS/METADATA/ID/IdentificationData.h
include/OpenMS/METADATA/ID/IdentificationDataConverter.h
include/OpenMS/METADATA/ID/IdentifiedCompound.h
include/OpenMS/METADATA/ID/IdentifiedMolecule.h
include/OpenMS/METADATA/ID/IdentifiedSequence.h
include/OpenMS/METADATA/ID/InputFile.h
include/OpenMS/METADATA/ID/MetaData.h
include/OpenMS/METADATA/ID/Observation.h
include/OpenMS/METADATA/ID/ObservationMatch.h
include/OpenMS/METADATA/ID/ObservationMatchGroup.h
include/OpenMS/METADATA/ID/ParentGroup.h
include/OpenMS/METADATA/ID/ParentMatch.h
include/OpenMS/METADATA/ID/ParentSequence.h
include/OpenMS/METADATA/ID/ProcessingSoftware.h
include/OpenMS/METADATA/ID/ProcessingStep.h
include/OpenMS/METADATA/ID/ScoreType.h
include/OpenMS/METADATA/ID/ScoredProcessingResult.h
include/OpenMS/METADATA/Identification.h
include/OpenMS/METADATA/IdentificationHit.h
include/OpenMS/METADATA/Instrument.h
include/OpenMS/METADATA/InstrumentSettings.h
include/OpenMS/METADATA/IonDetector.h
include/OpenMS/METADATA/IonSource.h
include/OpenMS/METADATA/MSQuantifications.h
include/OpenMS/METADATA/MassAnalyzer.h
include/OpenMS/METADATA/MetaInfo.h
include/OpenMS/METADATA/MetaInfoDescription.h
include/OpenMS/METADATA/MetaInfoInterface.h
include/OpenMS/METADATA/MetaInfoInterfaceUtils.h
include/OpenMS/METADATA/MetaInfoRegistry.h
include/OpenMS/METADATA/Modification.h
include/OpenMS/METADATA/PeptideEvidence.h
include/OpenMS/METADATA/PeptideHit.h
include/OpenMS/METADATA/PeptideIdentification.h
include/OpenMS/METADATA/Precursor.h
include/OpenMS/METADATA/Product.h
include/OpenMS/METADATA/ProteinHit.h
include/OpenMS/METADATA/ProteinIdentification.h
include/OpenMS/METADATA/Sample.h
include/OpenMS/METADATA/SampleTreatment.h
include/OpenMS/METADATA/ScanWindow.h
include/OpenMS/METADATA/Software.h
include/OpenMS/METADATA/SourceFile.h
include/OpenMS/METADATA/SpectrumIdentification.h
include/OpenMS/METADATA/SpectrumLookup.h
include/OpenMS/METADATA/SpectrumMetaDataLookup.h
include/OpenMS/METADATA/SpectrumSettings.h
include/OpenMS/METADATA/Tagging.h
include/OpenMS/OPENSWATHALGO/ALGO/Scoring.h
include/OpenMS/OPENSWATHALGO/ALGO/StatsHelpers.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/DataFrameWriter.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/ITransition.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/MockObjects.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/SwathMap.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionHelper.h
include/OpenMS/OPENSWATHALGO/DATAACCESS/Transitions.h
include/OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h
include/OpenMS/OpenMSConfig.h
include/OpenMS/QC/Contaminants.h
include/OpenMS/QC/DBSuitability.h
include/OpenMS/QC/FWHM.h
include/OpenMS/QC/FeatureSummary.h
include/OpenMS/QC/FragmentMassError.h
include/OpenMS/QC/IdentificationSummary.h
include/OpenMS/QC/MQEvidenceExporter.h
include/OpenMS/QC/MissedCleavages.h
include/OpenMS/QC/Ms2IdentificationRate.h
include/OpenMS/QC/Ms2SpectrumStats.h
include/OpenMS/QC/MzCalibration.h
include/OpenMS/QC/PSMExplainedIonCurrent.h
include/OpenMS/QC/PeptideMass.h
include/OpenMS/QC/QCBase.h
include/OpenMS/QC/RTAlignment.h
include/OpenMS/QC/SpectrumCount.h
include/OpenMS/QC/TIC.h
include/OpenMS/SIMULATION/DetectabilitySimulation.h
include/OpenMS/SIMULATION/DigestSimulation.h
include/OpenMS/SIMULATION/EGHFitter1D.h
include/OpenMS/SIMULATION/EGHModel.h
include/OpenMS/SIMULATION/IonizationSimulation.h
include/OpenMS/SIMULATION/LABELING/BaseLabeler.h
include/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h
include/OpenMS/SIMULATION/LABELING/ICPLLabeler.h
include/OpenMS/SIMULATION/LABELING/ITRAQLabeler.h
include/OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h
include/OpenMS/SIMULATION/LABELING/O18Labeler.h
include/OpenMS/SIMULATION/LABELING/SILACLabeler.h
include/OpenMS/SIMULATION/MSSim.h
include/OpenMS/SIMULATION/RTSimulation.h
include/OpenMS/SIMULATION/RawMSSignalSimulation.h
include/OpenMS/SIMULATION/RawTandemMSSignalSimulation.h
include/OpenMS/SIMULATION/SimTypes.h
include/OpenMS/SYSTEM/BuildInfo.h
include/OpenMS/SYSTEM/ExternalProcess.h
include/OpenMS/SYSTEM/File.h
include/OpenMS/SYSTEM/FileWatcher.h
include/OpenMS/SYSTEM/JavaInfo.h
include/OpenMS/SYSTEM/NetworkGetRequest.h
include/OpenMS/SYSTEM/PythonInfo.h
include/OpenMS/SYSTEM/RWrapper.h
include/OpenMS/SYSTEM/StopWatch.h
include/OpenMS/SYSTEM/SysInfo.h
include/OpenMS/SYSTEM/UpdateCheck.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMetaboIdent.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletConstants.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.h
include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePick.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h
include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h
include/OpenMS/build_config.h
include/OpenMS/config.h
include/OpenMS/openms_data_path.h
include/OpenMS/openms_package_version.h
include/thirdparty/evergreen/license.txt
include/thirdparty/evergreen/src/BitReversedShuffle/BitReversal.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/COBRAShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/LocalPairwiseShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/NaiveShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/RecursiveShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/SemiRecursiveShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/StockhamShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/TableShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/UnrolledShuffle.hpp
include/thirdparty/evergreen/src/BitReversedShuffle/XORShuffle.hpp
include/thirdparty/evergreen/src/CMakeLists.txt
include/thirdparty/evergreen/src/Convolution/any_and_all.hpp
include/thirdparty/evergreen/src/Convolution/custom_pow.hpp
include/thirdparty/evergreen/src/Convolution/fft_convolve.hpp
include/thirdparty/evergreen/src/Convolution/naive_convolve.hpp
include/thirdparty/evergreen/src/Convolution/p_convolve.hpp
include/thirdparty/evergreen/src/Engine/BeliefPropagationInferenceEngine.hpp
include/thirdparty/evergreen/src/Engine/ConstantMultiplierMessagePasser.hpp
include/thirdparty/evergreen/src/Engine/ContextFreeMessagePasser.hpp
include/thirdparty/evergreen/src/Engine/ConvolutionTree.hpp
include/thirdparty/evergreen/src/Engine/ConvolutionTreeMessagePasser.hpp
include/thirdparty/evergreen/src/Engine/Edge.hpp
include/thirdparty/evergreen/src/Engine/FIFOScheduler.hpp
include/thirdparty/evergreen/src/Engine/HUGINMessagePasser.hpp
include/thirdparty/evergreen/src/Engine/HybridFIFOPriorityScheduler.hpp
include/thirdparty/evergreen/src/Engine/Hyperedge.hpp
include/thirdparty/evergreen/src/Engine/InferenceEngine.hpp
include/thirdparty/evergreen/src/Engine/InferenceGraph.hpp
include/thirdparty/evergreen/src/Engine/KikuchiGraph.hpp
include/thirdparty/evergreen/src/Engine/ListQueue.hpp
include/thirdparty/evergreen/src/Engine/MessagePasser.hpp
include/thirdparty/evergreen/src/Engine/PNormMixin.hpp
include/thirdparty/evergreen/src/Engine/PriorityScheduler.hpp
include/thirdparty/evergreen/src/Engine/Queueable.hpp
include/thirdparty/evergreen/src/Engine/RandomSubtreeScheduler.hpp
include/thirdparty/evergreen/src/Engine/Scheduler.hpp
include/thirdparty/evergreen/src/Engine/SetHash.hpp
include/thirdparty/evergreen/src/Engine/SetQueue.hpp
include/thirdparty/evergreen/src/Engine/TransformMessagePasser.hpp
include/thirdparty/evergreen/src/Engine/TreeScheduler.hpp
include/thirdparty/evergreen/src/Engine/random_tree_subgraph.hpp
include/thirdparty/evergreen/src/Engine/split_connected_components.hpp
include/thirdparty/evergreen/src/Evergreen/AdditiveDependency.hpp
include/thirdparty/evergreen/src/Evergreen/BetheInferenceGraphBuilder.hpp
include/thirdparty/evergreen/src/Evergreen/BruteForceInferenceEngine.hpp
include/thirdparty/evergreen/src/Evergreen/ConstantMultiplierDependency.hpp
include/thirdparty/evergreen/src/Evergreen/Dependency.hpp
include/thirdparty/evergreen/src/Evergreen/InferenceGraphBuilder.hpp
include/thirdparty/evergreen/src/Evergreen/PseudoAdditiveDependency.hpp
include/thirdparty/evergreen/src/Evergreen/TableDependency.hpp
include/thirdparty/evergreen/src/Evergreen/VariableBounds.hpp
include/thirdparty/evergreen/src/Evergreen/evergreen.hpp
include/thirdparty/evergreen/src/FFT/DIF.hpp
include/thirdparty/evergreen/src/FFT/DIFButterfly.hpp
include/thirdparty/evergreen/src/FFT/DIT.hpp
include/thirdparty/evergreen/src/FFT/DITButterfly.hpp
include/thirdparty/evergreen/src/FFT/FFT.hpp
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