/*
    libmaus2
    Copyright (C) 2009-2014 German Tischler
    Copyright (C) 2011-2014 Genome Research Limited

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/
#if ! defined(LIBMAUS2_LCS_METALOCALEDITDISTANCE_HPP)
#define LIBMAUS2_LCS_METALOCALEDITDISTANCE_HPP

#include <libmaus2/lcs/LocalEditDistance.hpp>
#include <libmaus2/lcs/BandedLocalEditDistance.hpp>

namespace libmaus2
{
	namespace lcs
	{
		template<
			libmaus2::lcs::edit_distance_priority_type _edit_distance_priority = ::libmaus2::lcs::del_ins_diag
		>
		struct MetaLocalEditDistance : public LocalEditDistanceTraceContainer
		{
			static ::libmaus2::lcs::edit_distance_priority_type const edit_distance_priority = _edit_distance_priority;
			typedef MetaLocalEditDistance<edit_distance_priority> this_type;
			typedef std::unique_ptr<this_type> unique_ptr_type;

			::libmaus2::lcs::LocalEditDistance<edit_distance_priority> E;
			::libmaus2::lcs::BandedLocalEditDistance<edit_distance_priority> BE;

			typedef typename ::libmaus2::lcs::LocalEditDistance<edit_distance_priority>::result_type result_type;

			MetaLocalEditDistance()
			{
			}

			template<typename iterator_a, typename iterator_b>
			result_type process(
				iterator_a aa,
				uint64_t const rn,
				iterator_b bb,
				uint64_t const rm,
				uint64_t const rk,
				similarity_type const gain_match = 1,
				similarity_type const penalty_subst = 1,
				similarity_type const penalty_ins = 1,
				similarity_type const penalty_del = 1
			)
			{
				if ( ::libmaus2::lcs::BandedLocalEditDistance<edit_distance_priority>::validParameters(rn,rm,rk) )
				{
					result_type const R = BE.process(aa,rn,bb,rm,rk,gain_match,penalty_subst,penalty_ins,penalty_del);
					ta = BE.ta;
					te = BE.te;
					return R;
				}
				else
				{
					result_type const R = E.process(aa,rn,bb,rm,rk,gain_match,penalty_subst,penalty_ins,penalty_del);
					ta = E.ta;
					te = E.te;
					return R;
				}
			}
		};
	}
}
#endif
