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include ./$(DEPDIR)/fa2fq.Po
include ./$(DEPDIR)/filter_blat.Po
include ./$(DEPDIR)/filter_contigs.Po
include ./$(DEPDIR)/filterfa.Po
include ./$(DEPDIR)/fq2fa.Po
include ./$(DEPDIR)/idba.Po
include ./$(DEPDIR)/idba_hybrid.Po
include ./$(DEPDIR)/idba_subasm.Po
include ./$(DEPDIR)/idba_tran.Po
include ./$(DEPDIR)/idba_tran_test.Po
include ./$(DEPDIR)/idba_ud.Po
include ./$(DEPDIR)/parallel_blat.Po
include ./$(DEPDIR)/parallel_rna_blat.Po
include ./$(DEPDIR)/print_graph.Po
include ./$(DEPDIR)/raw_n50.Po
include ./$(DEPDIR)/sample_reads.Po
include ./$(DEPDIR)/scaffold.Po
include ./$(DEPDIR)/shuffle_reads.Po
include ./$(DEPDIR)/sim_reads.Po
include ./$(DEPDIR)/sim_reads_tran.Po
include ./$(DEPDIR)/sort_psl.Po
include ./$(DEPDIR)/sort_reads.Po
include ./$(DEPDIR)/split_fa.Po
include ./$(DEPDIR)/split_fq.Po
include ./$(DEPDIR)/split_scaffold.Po
include ./$(DEPDIR)/test.Po
include ./$(DEPDIR)/validate_component.Po
include ./$(DEPDIR)/validate_contigs_blat.Po
include ./$(DEPDIR)/validate_contigs_mummer.Po
include ./$(DEPDIR)/validate_reads_blat.Po
include ./$(DEPDIR)/validate_rna.Po

.cpp.o:
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filter_contigs.o: $(top_srcdir)/src/tools/filter_contigs.cpp
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filter_contigs.obj: $(top_srcdir)/src/tools/filter_contigs.cpp
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	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d "$(distdir)/$$file"; then \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(PROGRAMS)
installdirs:
	for dir in "$(DESTDIR)$(bindir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
	else \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-binPROGRAMS clean-generic clean-noinstPROGRAMS \
	mostlyclean-am

distclean: distclean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
	distclean-tags

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am:

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am: install-binPROGRAMS

install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-compile mostlyclean-generic

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am: uninstall-binPROGRAMS

.MAKE: install-am install-strip

.PHONY: CTAGS GTAGS TAGS all all-am check check-am clean \
	clean-binPROGRAMS clean-generic clean-noinstPROGRAMS \
	cscopelist-am ctags ctags-am distclean distclean-compile \
	distclean-generic distclean-tags distdir dvi dvi-am html \
	html-am info info-am install install-am install-binPROGRAMS \
	install-data install-data-am install-dvi install-dvi-am \
	install-exec install-exec-am install-html install-html-am \
	install-info install-info-am install-man install-pdf \
	install-pdf-am install-ps install-ps-am install-strip \
	installcheck installcheck-am installdirs maintainer-clean \
	maintainer-clean-generic mostlyclean mostlyclean-compile \
	mostlyclean-generic pdf pdf-am ps ps-am tags tags-am uninstall \
	uninstall-am uninstall-binPROGRAMS

.PRECIOUS: Makefile


# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
