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lib/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf
lib/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf
lib/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf
lib/hyphy/TemplateBatchFiles/molclockBootstrap.bf
lib/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf
lib/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf
lib/hyphy/TemplateBatchFiles/partitionSequences.ibf
lib/hyphy/TemplateBatchFiles/posteriors.ibf
lib/hyphy/TemplateBatchFiles/qndhelper1.ibf
lib/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf
lib/hyphy/TemplateBatchFiles/qndhelper2.ibf
lib/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf
lib/hyphy/TemplateBatchFiles/qndhelper3.ibf
lib/hyphy/TemplateBatchFiles/qndhelper4.ibf
lib/hyphy/TemplateBatchFiles/queryTree.bf
lib/hyphy/TemplateBatchFiles/readIndexFile.bf
lib/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf
lib/hyphy/TemplateBatchFiles/relrateBootstrap.bf
lib/hyphy/TemplateBatchFiles/relratioBootstrap.bf
lib/hyphy/TemplateBatchFiles/selectModelParameters.bf
lib/hyphy/TemplateBatchFiles/simpleBootstrap.bf
lib/hyphy/data/brown.nuc
lib/hyphy/data/integrase_BDA.nex
lib/hyphy/data/p51.aa
lib/hyphy/data/p51.nex
