Filename	Name	Consensus	Factor Name	DBD	Submotif	Cell Type	IP	Assay	GEO ID	Source
ap1.motif	AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	ATGACTCATC	AP-1	bZIP	canonical	ThioMac	PU.1	ChIP-Seq	GSE21512	Homer
ap2gamma.motif	AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	AP-2gamma	AP2	canonical	MCF7	TFAP2C	ChIP-Seq	GSE21234	Homer
ap2.motif	AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	AP-2alpha	AP2	canonical	Hela	AP2alpha	ChIP-Seq	GSE31477	Homer
ap4.motif	Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	Ap4	bHLH	canonical	AML	Tfap4	ChIP-Seq	GSE45738	Homer
are-fox.motif	FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACANA	FOXA1:AR	Forkhead,NR	canonical	LNCAP	AR	ChIP-Seq	GSE27824	Homer
are.motif	ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGAACAGNCTGTTCTT	ARE	NR	canonical	LNCAP	AR	ChIP-Seq	GSE27824	Homer
ar-half.motif	AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	AR-halfsite	NR	canonical	LNCaP	AR	ChIP-Seq	GSE27824	Homer
arnt.motif	Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	Arnt:Ahr	bHLH	canonical	MCF7	Arnt	ChIP-Seq	Lo et al.	Homer
atf1.motif	Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	Atf1	bZIP	canonical	K562	ATF1	ChIP-Seq	GSE31477	Homer
atf3.motif	Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	Atf3	bZIP	canonical	GBM	ATF3	ChIP-Seq	GSE33912	Homer
atf4.motif	Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	Atf4	bZIP	canonical	MEF	Atf4	ChIP-Seq	GSE35681	Homer
atoh1.motif	Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNAVCAGCTGGC	Atoh1	bHLH	canonical	Cerebellum	Atoh1	ChIP-Seq	GSE22111	Homer
bach1.motif	Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	Bach1	bZIP	canonical	K562	Bach1	ChIP-Seq	GSE31477	Homer
bach2.motif	Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	Bach2	bZIP	canonical	OCILy7	Bach2	ChIP-Seq	GSE44420	Homer
batf.motif	BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	BATF	bZIP	canonical	Th17	BATF	ChIP-Seq	GSE39756	Homer
bcl6.motif	Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	Bcl6	Zf	canonical	Liver	Bcl6	ChIP-Seq	GSE31578	Homer
bhlhe40.motif	bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	bHLHE40	bHLH	canonical	HepG2	BHLHE40	ChIP-Seq	GSE31477	Homer
bmal.motif	BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	BMAL1	bHLH	canonical	Liver	Bmal1	ChIP-Seq	GSE39860	Homer
bmyb.motif	BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	BMYB	HTH	canonical	Hela	BMYB	ChIP-Seq	GSE27030	Homer
boris.motif	BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	BORIS	Zf	canonical	K562	CTCFL	ChIP-Seq	GSE32465	Homer
brachyury.motif	Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	Brachyury	T-box	canonical	Mesoendoderm	Brachyury	ChIP-exo	GSE54963	Homer
bzip-irf.motif	bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	bZIP:IRF	bZIP,IRF	canonical	Th17	BatF	ChIP-Seq	GSE39756	Homer
cdx2.motif	Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GTCATAAAAN	Cdx2	Homeobox	canonical	mES	Cdx2	ChIP-Seq	GSE14586	Homer
cebp-ap1.motif	CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	NATGTTGCAA	CEBP:AP1	bZIP	canonical	ThioMac	CEBPb	ChIP-Seq	GSE21512	Homer
cebp-cebp.motif	CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	CEBP:CEBP	bZIP	canonical	MEF	Chop	ChIP-Seq	GSE35681	Homer
cebp.motif	CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	CEBP	bZIP	canonical	ThioMac	CEBPb	ChIP-Seq	GSE21512	Homer
chop.motif	Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	Chop	bZIP	canonical	MEF	Chop	ChIP-Seq	GSE35681	Homer
chr.motif	CHR(?)/Hela-CellCycle-Expression/Homer	CGGTTTCAAA	CHR	?	canonical	Hela	CellCycle	Expression	NA	Homer
clock.motif	CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	CLOCK	bHLH	canonical	Liver	Clock	ChIP-Seq	GSE39860	Homer
cMyc.lncap.motif	c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	NCCACGTG	c-Myc	bHLH	canonical	LNCAP	cMyc	ChIP-Seq	Unpublished	Homer
cmyc.motif	c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	GNCCACGTGG	c-Myc	bHLH	canonical	mES	cMyc	ChIP-Seq	GSE11431	Homer
cre.motif	CRE(bZIP)/Promoter/Homer	CGGTGACGTCAC	CRE	bZIP	canonical	NA	NA	Promoter Enrichment	NA	Homer
crx.motif	CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	CRX	Homeobox	canonical	Retina	Crx	ChIP-Seq	GSE20012	Homer
ctcf.motif	CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	ATAGTGCCACCTGGTGGCCA	CTCF	Zf	canonical	CD4+	CTCF	ChIP-Seq	Barski et al.	Homer
ctcf-mys.motif	CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCAANAGTGGCCA	CTCF-SatelliteElement	Zf?	canonical	CD4+	CTCF	ChIP-Seq	Barski et al.	Homer
dmc1.motif	Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	Mouse_Recombination_Hotspot	Zf	canonical	Testis	DMC1	ChIP-Seq	GSE24438	Homer
e2a.motif	E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	ANACAGCTGC	E2A	bHLH	canonical	proBcell	E2A	ChIP-Seq	GSE21978	Homer
e2f1.motif	E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	E2F1	E2F	canonical	Hela	E2F1	ChIP-Seq	GSE22478	Homer
e2f4.motif	E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	E2F4	E2F	canonical	K562	E2F4	ChIP-Seq	GSE31477	Homer
e2f6.motif	E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	E2F6	E2F	canonical	Hela	E2F6	ChIP-Seq	GSE31477	Homer
e2f7.motif	E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	E2F7	E2F	canonical	Hela	E2F7	ChIP-Seq	GSE32673	Homer
e2f.motif	E2F(E2F)/Hela-CellCycle-Expression/Homer	TTCGCGCGAAAA	E2F	E2F	canonical	Hela	CellCycle	Expression	NA	Homer
e47.motif	E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NNCACCTGCN	E2A	bHLH	near_PU.1	Bcell	PU.1	ChIP-Seq	GSE21512	Homer
ebf.motif	EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	GGTCCCTAGGGA	EBF	EBF	canonical	proBcell	EBF	ChIP-Seq	GSE21978	Homer
ebf-old.motif	EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCAGGGGA	EBF1	EBF	canonical	Near	E2A	ChIP-Seq	GSE21512	Homer
ebna1.motif	EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	EBNA1	EBV virus	canonical	Raji	EBNA1	ChIP-Seq	GSE30709	Homer
ebox.motif	E-box(bHLH)/Promoter/Homer	CCGGTCACGTGA	E-box	bHLH	canonical	NA	NA	Promoter Enrichment	NA	Homer
egr1.motif	Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	Egr1	Zf	canonical	K562	Egr1	ChIP-Seq	GSE32465	Homer
egr2.motif	Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	Egr2	Zf	canonical	Thymocytes	Egr2	ChIP-Seq	GSE34254	Homer
ehf.motif	EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	EHF	ETS	canonical	LoVo	EHF	ChIP-Seq	GSE49402	Homer
eklf.motif	EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NTGGGTGTGGCC	EKLF	Zf	canonical	Erythrocyte	Klf1	ChIP-Seq	GSE20478	Homer
elf1.motif	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AACCGGAAGT	ELF1	ETS	canonical	Jurkat	ELF1	ChIP-Seq	SRA014231	Homer
elf5.motif	ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	ELF5	ETS	canonical	T47D	ELF5	ChIP-Seq	GSE30407	Homer
elk1.motif	Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	Elk1	ETS	canonical	Hela	Elk1	ChIP-Seq	GSE31477	Homer
elk4.motif	Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	Elk4	ETS	canonical	Hela	Elk4	ChIP-Seq	GSE31477	Homer
eomes.motif	Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	Eomes	T-box	canonical	H9	Eomes	ChIP-Seq	GSE26097	Homer
ere.motif	ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	AAGGTCACNGTGACC	ERE	NR	IR3	MCF7	ERa	ChIP-Seq	Unpublished	Homer
erg.motif	ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	ERG	ETS	canonical	VCaP	ERG	ChIP-Seq	GSE14097	Homer
erra.motif	Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	Erra	NR	canonical	HepG2	Erra	ChIP-Seq	GSE31477	Homer
esrrb.motif	Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	GTGACCTTGA	Esrrb	NR	canonical	mES	Esrrb	ChIP-Seq	GSE11431	Homer
ets1.motif	ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	ETS1	ETS	canonical	Jurkat	ETS1	ChIP-Seq	GSE17954	Homer
ets-distal.motif	Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	AACAGGAAGT	Ets1-distal	ETS	canonical	CD4+	PolII	ChIP-Seq	Barski et al.	Homer
ets-ebox.motif	ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAAACAGCTG	ETS:E-box	ETS,bHLH	canonical	HPC7	Scl	ChIP-Seq	GSE22178	Homer
ets.motif	ETS(ETS)/Promoter/Homer	AACCGGAAGT	ETS	ETS	canonical	NA	NA	Promoter Enrichment	NA	Homer
ets-runx.motif	ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	ACAGGATGTGGT	ETS:RUNX	ETS,Runt	canonical	Jurkat	RUNX1	ChIP-Seq	GSE17954	Homer
etv1.motif	ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	ETV1	ETS	canonical	GIST48	ETV1	ChIP-Seq	GSE22441	Homer
ews-erg.motif	EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	EWS:ERG-fusion	ETS	canonical	CADO_ES1	EWS:ERG	ChIP-Seq	SRA014231	Homer
ews-fli1.motif	EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	AACAGGAAAT	EWS:FLI1-fusion	ETS	canonical	SK_N_MC	EWS:FLI1	ChIP-Seq	SRA014231	Homer
fli.motif	Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	Fli1	ETS	canonical	CD8	FLI	ChIP-Seq	GSE20898	Homer
foxa1.lncap.motif	FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	AAAGTAAACA	FOXA1	Forkhead	canonical	LNCAP	FOXA1	ChIP-Seq	GSE27824	Homer
foxa1.mcf7.motif	FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	AAAGTAAACA	FOXA1	Forkhead	canonical	MCF7	FOXA1	ChIP-Seq	GSE26831	Homer
foxa2.motif	Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CTTGTTTACATA	Foxa2	Forkhead	canonical	Liver	Foxa2	ChIP-Seq	GSE25694	Homer
fox-ebox.motif	Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	Fox:Ebox	Forkhead,bHLH	canonical	Panc1	Foxa2	ChIP-Seq	GSE47459	Homer
foxh1.motif	Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	Foxh1	Forkhead	canonical	hESC	FOXH1	ChIP-Seq	GSE29422	Homer
foxo1.motif	Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	Foxo1	Forkhead	canonical	RAW	Foxo1	ChIP-Seq	Fan et al.	Homer
foxp1.motif	FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	FOXP1	Forkhead	canonical	H9	FOXP1	ChIP-Seq	GSE31006	Homer
fxr.motif	FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTN	FXR	NR	IR1	Liver	FXR	ChIP-Seq	Chong et al.	Homer
gabp.motif	GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	AACCGGAAGT	GABPA	ETS	canonical	Jurkat	GABPa	ChIP-Seq	GSE17954	Homer
gata2.motif	Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	NCCTTATCTC	Gata2	Zf	canonical	K562	GATA2	ChIP-Seq	GSE18829	Homer
gata3.dr4.motif	GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	GATA3	Zf	DR4	iTreg	Gata3	ChIP-Seq	GSE20898	Homer
gata3.dr8.motif	GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	GATA3	Zf	DR8	iTreg	Gata3	ChIP-Seq	GSE20898	Homer
gata3.ir3.motif	GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	GATA	Zf	IR3	iTreg	Gata3	ChIP-Seq	GSE20898	Homer
gata3.ir4.motif	GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	GATA	Zf	IR4	iTreg	Gata3	ChIP-Seq	GSE20898	Homer
gata3.motif	GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	GATA3	Zf	canonical	iTreg	Gata3	ChIP-Seq	GSE20898	Homer
gata4.motif	Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	Gata4	Zf	canonical	Heart	Gata4	ChIP-Seq	GSE35151	Homer
gata.motif	Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	CAGATAAGGN	Gata1	Zf	canonical	K562	GATA1	ChIP-Seq	GSE18829	Homer
gata-scl.motif	GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CGGCTGCNGNNNNCAGATAA	GATA:SCL	Zf,bHLH	canonical	Ter119	SCL	ChIP-Seq	GSE18720	Homer
gfi1b.motif	Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	AAATCACTGC	Gfi1b	Zf	canonical	HPC7	Gfi1b	ChIP-Seq	GSE22178	Homer
gfx.motif	GFX(?)/Promoter/Homer	ATTCTCGCGAGA	GFX	?	canonical	NA	NA	Promoter Enrichment	NA	Homer
gfy.motif	GFY(?)/Promoter/Homer	ACTACAATTCCC	GFY	?	canonical	NA	NA	Promoter Enrichment	NA	Homer
gfy-staf.motif	GFY-Staf(?,Zf)/Promoter/Homer	AACTACAATTCCCAGAATGC	GFY-Staf	?,Zf	canonical	NA	NA	Promoter Enrichment	NA	Homer
gli.motif	GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	GLI3	Zf	canonical	Limb	GLI3	ChIP-Chip	GSE11077	Homer
gre.motif	GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NAGAACAGNCTGTTCT	GRE	NR	IR3	A549	GR	ChIP-Seq	GSE32465	Homer
gre-raw.motif	GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	GRE	NR	IR3	RAW264.7	GRE	ChIP-Seq	Unpublished	Homer
grhl2.motif	GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	GRHL2	CP2	canonical	HBE	GRHL2	ChIP-Seq	GSE46194	Homer
heb.motif	Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	Unknown-ESC-element	?	canonical	mES	Nanog	ChIP-Seq	GSE11724	Homer
hif1a.motif	HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	HIF-1a	bHLH	canonical	MCF7	HIF1a	ChIP-Seq	GSE28352	Homer
hif2a.motif	HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	HIF2a	bHLH	canonical	785_O	HIF2a	ChIP-Seq	GSE34871	Homer
hnf1.motif	Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAACATTAAC	Hnf1	Homeobox	canonical	Liver	Foxa2	Chip-Seq	GSE25694	Homer
hnf4.motif	HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CAGAGGNCAAAGTCCA	HNF4a	NR	DR1	HepG2	HNF4a	ChIP-Seq	GSE25021	Homer
hnf6.motif	HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	HNF6	Homeobox	canonical	Liver	Hnf6	ChIP-Seq	ERP000394	Homer
hoxa2.motif	HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	HOXA2	Homeobox	canonical	mES	Hoxa2	ChIP-Seq	Donaldson et al.	Homer
hoxa9.motif	HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	HOXA9	Homeobox	canonical	HSC	Hoxa9	ChIP-Seq	GSE33509	Homer
hoxb4.motif	Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	Hoxb4	Homeobox	canonical	ES	Hoxb4	ChIP-Seq	GSE34014	Homer
hoxc9.motif	Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	Hoxc9	Homeobox	canonical	Ainv15	Hoxc9	ChIP-Seq	GSE21812	Homer
hoxd13.motif	HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	HOXD13	Homeobox	canonical	Chicken	Hoxd13	ChIP-Seq	GSE38910	Homer
hsf1.motif	HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	NNTTCTGGAANNTTCTAGAA	HRE	HSF	canonical	HepG2	HSF1	ChIP-Seq	GSE31477	Homer
hsf.motif	HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	HRE	HSF	canonical	Striatum	HSF1	ChIP-Seq	GSE38000	Homer
irf1.motif	IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	IRF1	IRF	canonical	PBMC	IRF1	ChIP-Seq	GSE43036	Homer
irf2.motif	IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	IRF2	IRF	canonical	Erythroblas	IRF2	ChIP-Seq	GSE36985	Homer
irf4.motif	IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	IRF4	IRF	canonical	GM12878	IRF4	ChIP-Seq	GSE32465	Homer
isl1.motif	Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	Isl1	Homeobox	canonical	Neuron	Isl1	ChIP-Seq	GSE31456	Homer
isre.motif	ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCAGTTTC	ISRE	IRF	canonical	ThioMac	LPS	Expression	GSE23622	Homer
jun-ap1.motif	Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGACTCATCN	Jun-AP1	bZIP	canonical	K562	cJun	ChIP-Seq	GSE31477	Homer
jun-cre.motif	c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCC	c-Jun-CRE	bZIP	canonical	K562	cJun	ChIP-Seq	GSE31477	Homer
jund.motif	JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	JunD	bZIP	canonical	K562	JunD	ChIP-Seq	NA	Homer
klf4.motif	Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	Klf4	Zf	canonical	mES	Klf4	ChIP-Seq	GSE11431	Homer
klf5.motif	KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	KLF5	Zf	canonical	LoVo	KLF5	ChIP-Seq	GSE49402	Homer
lhx2.motif	Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	Lhx2	Homeobox	canonical	HFSC	Lhx2	ChIP-Seq	GSE48068	Homer
lhx3.motif	Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	Lhx3	Homeobox	canonical	Neuron	Lhx3	ChIP-Seq	GSE31456	Homer
limb.motif	Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	GGCAATTAAA	Unknown	Homeobox	canonical	Limb	p300	ChIP-Seq	NA	Homer
lrh1.motif	Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	Nr5a2	NR	canonical	Pancreas	LRH1	ChIP-Seq	GSE34295	Homer
lxre.motif	LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	GGGTTACTANAGGTCA	LXRE	NR	DR4	RAW	LXRb.biotin	ChIP-Seq	GSE21512	Homer
mafa.motif	MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	MafA	bZIP	canonical	Islet	MafA	ChIP-Seq	GSE30298	Homer
mafF.motif	MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	MafF	bZIP	canonical	HepG2	MafF	ChIP-Seq	GSE31477	Homer
mafk.motif	MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	MafK	bZIP	canonical	C2C12	MafK	ChIP-Seq	GSE36030	Homer
max.motif	Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	ACCACGTGGTCN	Max	bHLH	canonical	K562	Max	ChIP-Seq	GSE31477	Homer
maz.motif	Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	Maz	Zf	canonical	HepG2	Maz	ChIP-Seq	GSE31477	Homer
mef2a.motif	Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CCAAAAATAG	Mef2a	MADS	canonical	HL1	Mef2a.biotin	ChIP-Seq	GSE21529	Homer
mef2c.motif	Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	Mef2c	MADS	canonical	GM12878	Mef2c	ChIP-Seq	GSE32465	Homer
myba.motif	AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	AMYB	HTH	canonical	Testes	AMYB	ChIP-Seq	GSE44588	Homer
myb.motif	MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	MYB	HTH	canonical	ERMYB	Myb	ChIPSeq	GSE22095	Homer
myf5.motif	Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	Myf5	bHLH	canonical	GM	Myf5	ChIP-Seq	GSE24852	Homer
myod.motif	MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	AGCAGCTGCTGC	MyoD	bHLH	canonical	Myotube	MyoD	ChIP-Seq	GSE21614	Homer
myog.motif	MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	MyoG	bHLH	canonical	C2C12	MyoG	ChIP-Seq	GSE36024	Homer
nanog.motif	Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	GGCCATTAAC	Nanog	Homeobox	canonical	mES	Nanog	ChIP-Seq	GSE11724	Homer
neurod1.motif	NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	NeuroD1	bHLH	canonical	Islet	NeuroD1	ChIP-Seq	GSE30298	Homer
nf1-fox.motif	NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	NNTGTTTATTTTGGCA	NF1:FOXA1	CTF,Forkhead	canonical	LNCAP	FOXA1	ChIP-Seq	GSE27824	Homer
nf1-half.motif	NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	TTGCCAAG	NF1-halfsite	CTF	canonical	LNCaP	NF1	ChIP-Seq	Unpublished	Homer
nf1.motif	NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CTTGGCACNGTGCCAA	NF1	CTF	canonical	LNCAP	NF1	ChIP-Seq	Unpublished	Homer
nfat-ap1.motif	NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	GAATGGAAAAAATGAGTCAT	NFAT:AP1	RHD,bZIP	canonical	Jurkat	NFATC1	ChIP-Seq	Jolma et al.	Homer
nfatc1.motif	NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	NFAT	RHD	canonical	Jurkat	NFATC1	ChIP-Seq	Jolma et al.	Homer
nfe2.motif	NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	NF-E2	bZIP	canonical	K562	NFE2	ChIP-Seq	GSE31477	Homer
nfkb.motif	NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	NFkB-p65-Rel	RHD	canonical	ThioMac	LPS	Expression	GSE23622	Homer
nfy.motif	NFY(CCAAT)/Promoter/Homer	AGCCAATCGG	NFY	CCAAT	canonical	NA	NA	Promoter Enrichment	NA	Homer
nkx2.1.motif	Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	Nkx2.1	Homeobox	canonical	LungAC	Nkx2.1	ChIP-Seq	GSE43252	Homer
nkx2.5.motif	Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	AASCACTCAA	Nkx2.5	Homeobox	canonical	HL1	Nkx2.5.biotin	ChIP-Seq	GSE21529	Homer
nkx3.1.motif	Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	Nkx3.1	Homeobox	canonical	LNCaP	Nkx3.1	ChIP-Seq	GSE28264	Homer
nkx6.1.motif	Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	Nkx6.1	Homeobox	canonical	Islet	Nkx6.1	ChIP-Seq	GSE40975	Homer
nmyc.motif	n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	GNCCACGTGG	n-Myc	bHLH	canonical	mES	nMyc	ChIP-Seq	GSE11431	Homer
npas2.motif	NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	NPAS2	bHLH	canonical	Liver	NPAS2	ChIP-Seq	GSE39860	Homer
nr5a2.motif	Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	TTCAAGGTCA	Nr5a2	NR	canonical	mES	Nr5a2	ChIP-Seq	GSE19019	Homer
nrf1.motif	NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	NRF1	NRF	canonical	MCF7	NRF1	ChIP-Seq	Unpublished	Homer
nrf2.motif	Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	Nrf2	bZIP	canonical	Lymphoblast	Nrf2	ChIP-Seq	GSE37589	Homer
nrf.motif	NRF(NRF)/Promoter/Homer	GTGCGCATGCGC	NRF	NRF	canonical	NA	NA	Promoter Enrichment	NA	Homer
nur77.motif	Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	Nur77	NR	canonical	K562	NR4A1	ChIP-Seq	GSE31363	Homer
oct2.motif	Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	Oct2	POU,Homeobox	canonical	Bcell	Oct2	ChIP-Seq	GSE21512	Homer
oct4.motif	Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAA	Oct4	POU,Homeobox	canonical	mES	Oct4	ChIP-Seq	GSE11431	Homer
oct4-sox17.motif	Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	Oct4:Sox17	POU,Homeobox,HMG	canonical	F9	Sox17	ChIP-Seq	GSE44553	Homer
oct4-sox2.motif	OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	OCT4-SOX2-TCF-NANOG	POU,Homeobox,HMG	canonical	mES	Oct4	ChIP-Seq	GSE11431	Homer
olig2.motif	Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	Olig2	bHLH	canonical	Neuron	Olig2	ChIP-Seq	GSE30882	Homer
p50.motif	NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	NFkB-p50,p52	RHD	canonical	Monocyte	p50	ChIP-Chip	Schreiber et al.	Homer
p53.motif	p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	AACATGCCCAGACATGCCCN	p53	p53	canonical	Saos	p53	ChIP-Seq	GSE15780	Homer
p53-myc.motif	p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	p53	p53	canonical	mES	cMyc	ChIP-Seq	GSE11431	Homer
p63.motif	p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNNGCATGTCCNGACATGCC	p63	p53	canonical	Keratinocyte	p63	ChIP-Seq	GSE17611	Homer
p65.motif	NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	AGGGGATTTCCC	NFkB-p65	RHD	canonical	GM12787	p65	ChIP-Seq	GSE19485	Homer
pax3-fkhr.motif	PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCGTGACTAATTNN	PAX3:FKHR-fusion	Paired,Homeobox	canonical	Rh4	PAX3:FKHR	ChIP-Seq	GSE19063	Homer
pax5.motif	PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCGTGACC	PAX5	Paired,Homeobox	canonical	GM12878	PAX5	ChIP-Seq	GSE32465	Homer
pax5-short.motif	PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCNCTGA	PAX5	Paired,Homeobox	condensed	GM12878	PAX5	ChIP-Seq	GSE32465	Homer
pax7-longest.motif	Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	Pax7	Paired,Homeobox	longest	Myoblast	Pax7	ChIP-Seq	GSE25064	Homer
pax7-long.motif	Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	Pax7	Paired,Homeobox	long	Myoblast	Pax7	ChIP-Seq	GSE25064	Homer
pax7.motif	Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	Pax7	Paired,Homeobox	canonical	Myoblast	Pax7	ChIP-Seq	GSE25064	Homer
pax8.motif	Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	Pax8	Paired,Homeobox	canonical	Thyroid	Pax8	ChIP-Seq	GSE26938	Homer
pbx1.motif	PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	PBX1	Homeobox	canonical	MCF7	PBX1	ChIP-Seq	GSE28007	Homer
pbx3.motif	Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	CCTGTCAATCAN	Pbx3	Homeobox	canonical	GM12878	PBX3	ChIP-Seq	GSE32465	Homer
pdx1.motif	Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	TCATCAATCA	Pdx1	Homeobox	canonical	Islet	Pdx1	ChIP-Seq	SRA008281	Homer
phox2a.motif	Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	Phox2a	Homeobox	canonical	Neuron	Phox2a	ChIP-Seq	GSE31456	Homer
pitx1.motif	Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	Pitx1	Homeobox	canonical	Chicken	Pitx1	ChIP-Seq	GSE38910	Homer
pparg.motif	PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	PPARE	NR	DR1	3T3L1	Pparg	ChIP-Seq	GSE13511	Homer
prdm14.motif	PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	AGGTCTCTAACC	PRDM14	Zf	canonical	H1	PRDM14	ChIP-Seq	GSE22767	Homer
prdm1.motif	PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	PRDM1	Zf	canonical	Hela	PRDM1	ChIP-Seq	GSE31477	Homer
prdm9.motif	PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	PRDM9	Zf	canonical	Testis	DMC1	ChIP-Seq	GSE35498	Homer
pr.motif	PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	PR	NR	canonical	T47D	PR	ChIP-Seq	GSE31130	Homer
ptf1a.motif	Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	Ptf1a	bHLH	canonical	Panc1	Ptf1a	ChIP-Seq	GSE47459	Homer
pu1-irf.motif	PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	CGGAAGTGAAAC	PU.1-IRF	ETS:IRF	canonical	Bcell	PU.1	ChIP-Seq	GSE21512	Homer
pu1.motif	PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	PU.1	ETS	canonical	ThioMac	PU.1	ChIP-Seq	GSE21512	Homer
rarg.motif	RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	RARg	NR	canonical	ES	RARg	ChIP-Seq	GSE30538	Homer
rbpj1-ebox.motif	RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	RBPJ:Ebox	?,bHLH	canonical	Panc1	Rbpj1	ChIP-Seq	GSE47459	Homer
rbpj1.motif	Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	Rbpj1	?	canonical	Panc1	Rbpj1	ChIP-Seq	GSE47459	Homer
rest.motif	REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGAGCTGTCCATGGTGCTGA	REST-NRSF	Zf	canonical	Jurkat	NRSF	ChIP-Seq	NA	Homer
reverb.motif	Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTAGGTCACTGGGTCA	Reverb	NR	DR2	RAW	Reverba.biotin	ChIP-Seq	GSE45914	Homer
rfx1.motif	Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	Rfx1	HTH	canonical	NPC	H3K4me1	ChIP-Seq	GSE16256	Homer
rfx2.motif	Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	Rfx2	HTH	canonical	LoVo	RFX2	ChIP-Seq	GSE49402	Homer
rfx3.motif	RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	RFX	HTH	canonical	K562	RFX3	ChIP-Seq	SRA012198	Homer
rfx5.motif	Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	Rfx5	HTH	canonical	GM12878	Rfx5	ChIP-Seq	GSE31477	Homer
runx1m.motif	RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	CAAACCACAG	RUNX	Runt	canonical	HPC7	Runx1	ChIP-Seq	GSE22178	Homer
runx1.motif	RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACAAA	RUNX1	Runt	canonical	Jurkat	RUNX1	ChIP-Seq	GSE29180	Homer
runx2.motif	RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	RUNX2	Runt	canonical	PCa	RUNX2	ChIP-Seq	GSE33889	Homer
runx.motif	RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTT	RUNX-AML	Runt	canonical	CD4+	PolII	ChIP-Seq	Barski et al.	Homer
rxr.motif	RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	RXR	NR	DR1	3T3L1	RXR	ChIP-Seq	GSE13511	Homer
scl.motif	SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	ANCAGCTG	SCL	bHLH	canonical	HPC7	Scl	ChIP-Seq	GSE13511	Homer
six1.motif	Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	Six1	Homeobox	canonical	Myoblast	Six1	ChIP-Chip	GSE20150	Homer
smad2.motif	Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	Smad2	MAD	canonical	ES	SMAD2	ChIP-Seq	GSE29422	Homer
smad3.motif	Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	Smad3	MAD	canonical	NPC	Smad3	ChIP-Seq	GSE36673	Homer
smad4.motif	Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	Smad4	MAD	canonical	ESC	SMAD4	ChIP-Seq	GSE29422	Homer
sox2.motif	Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	CCCATTGTTC	Sox2	HMG	canonical	mES	Sox2	ChIP-Seq	GSE11431	Homer
sox3.motif	Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	Sox3	HMG	canonical	NPC	Sox3	ChIP-Seq	GSE33059	Homer
sox6.motif	Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	Sox6	HMG	canonical	Myotubes	Sox6	ChIP-Seq	GSE32627	Homer
sp1.motif	Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	Sp1	Zf	canonical	NA	NA	Promoter Enrichment	NA	Homer
spdef.motif	SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ACATCCTGGT	SPDEF	ETS	canonical	VCaP	SPDEF	ChIP-Seq	SRA014231	Homer
srebp1a.motif	Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	ATCACCCCAT	Srebp1a	bHLH	canonical	HepG2	Srebp1a	ChIP-Seq	GSE31477	Homer
srebp2.motif	Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACGCCAC	Srebp2	bHLH	canonical	HepG2	Srebp2	ChIP-Seq	GSE31477	Homer
srf.motif	CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNA	CArG	MADS	canonical	PUER	Srf	ChIP-Seq	Sullivan et al.	Homer
staf.motif	ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	ZNF143|STAF	Zf	canonical	CUTLL	ZNF143	ChIP-Seq	GSE29600	Homer
stat1.motif	STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	STAT1	Stat	canonical	HelaS3	STAT1	ChIP-Seq	GSE12782	Homer
stat3.il23.motif	Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	CNCTTCCNGGAAGN	Stat3+il21	Stat	canonical	CD4	Stat3	ChIP-Seq	GSE19198	Homer
stat3.motif	Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	Stat3	Stat	canonical	mES	Stat3	ChIP-Seq	GSE11431	Homer
stat4.motif	STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NTTTCCAGGAAA	STAT4	Stat	canonical	CD4	Stat4	ChIP-Seq	GSE22104	Homer
stat5.motif	STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	ATTTCTNAGAAA	STAT5	Stat	canonical	mCD4+	Stat5	ChIP-Seq	GSE12346	Homer
stat6.2.motif	STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	STAT6	Stat	canonical	Macrophage	Stat6	ChIP-Seq	GSE38377	Homer
stat6.motif	STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ANTTCTTAAGAA	STAT6	Stat	canonical	CD4	Stat6	ChIP-Seq	GSE22104	Homer
t1isre.motif	T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	T1ISRE	IRF	canonical	ThioMac	Ifnb	Expression	NA	Homer
tata.motif	TATA-Box(TBP)/Promoter/Homer	CCTTTTATAGCC	TATA-Box	TBP	canonical	NA	NA	Promoter Enrichment	NA	Homer
tbet.motif	Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	Tbet	T-box	canonical	CD8	Tbet	ChIP-Seq	GSE33802	Homer
tbox-smad.motif	Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	Tbox:Smad	T-box,MAD	canonical	ESCd5	Smad2_3	ChIP-Seq	GSE29422	Homer
tbx20.motif	Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	Tbx20	T-box	canonical	Heart	Tbx20	ChIP-Seq	GSE29636	Homer
tbx5.motif	Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	Tbx5	T-box	canonical	HL1	Tbx5.biotin	ChIP-Seq	GSE21529	Homer
tcf12.motif	Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	ACAGCTGCTG	Tcf12	bHLH	canonical	GM12878	Tcf12	ChIP-Seq	GSE32465	Homer
tcf3.motif	Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ACATCAAAGG	Tcf3	HMG	canonical	mES	Tcf3	ChIP-Seq	GSE11724	Homer
tcf4.motif	Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ACATCAAAGGGA	Tcf4	HMG	canonical	Hct116	Tcf4	ChIP-Seq	SRA012054	Homer
tcf7l2.motif	TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	TCFL2	HMG	canonical	K562	TCF7L2	ChIP-Seq	GSE29196	Homer
tcfcp2l1.motif	Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NAAACCGGTTCAAACCGGTT	Tcfcp2l1	CP2	canonical	mES	Tcfcp2l1	ChIP-Seq	GSE11431	Homer
tead2.motif	TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	TEAD2	TEA	canonical	Py2T	Tead2	ChIP-Seq	GSE55709	Homer
tead4.motif	TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	TEAD4	TEA	canonical	Tropoblast	Tead4	ChIP-Seq	GSE37350	Homer
tead.motif	TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	NCTGGAATGC	TEAD	TEA	canonical	Fibroblast	PU.1	ChIP-Seq	Unpublished	Homer
tlx.motif	Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGGCTGCCA	Tlx?	NR	canonical	NPC	H3K4me1	ChIP-Seq	GSE16256	Homer
tr4.motif	TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	TR4	NR	DR1	Hela	TR4	ChIP-Seq	GSE24685	Homer
tra.motif	THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	THRa	NR	canonical	C17.2	THRa	ChIP-Seq	GSE38347	Homer
usf1.motif	USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	GGTCACGTGA	USF1	bHLH	canonical	GM12878	Usf1	ChIP-Seq	GSE32465	Homer
usf2.motif	Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	Usf2	bHLH	canonical	C2C12	Usf2	ChIP-Seq	GSE36030	Homer
vdr.motif	VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	NGAGGTCANNGAGTTCANNN	VDR	NR	DR3	GM10855	VDR+vitD	ChIP-Seq	GSE22484	Homer
xbox.motif	X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	X-box	HTH	canonical	NPC	H3K4me1	ChIP-Seq	GSE16256	Homer
yy1.motif	YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	YY1	Zf	canonical	NA	NA	Promoter Enrichment	NA	Homer
zbtb33.motif	ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGNTCTCGCGAGAAC	ZBTB33	Zf	canonical	GM12878	ZBTB33	ChIP-Seq	GSE32465	Homer
zfx.motif	ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTGG	ZFX	Zf	canonical	mES	Zfx	ChIP-Seq	GSE11431	Homer
znf263.motif	Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CNGTCCTCCC	Znf263	Zf	canonical	K562	Znf263	ChIP-Seq	GSE31477	Homer
znf711.motif	ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	ZNF711	Zf	canonical	SHSY5Y	ZNF711	ChIP-Seq	GSE20673	Homer
