recipe_sha: a8520adadc6e0abc700caed83e2601f6fa1d3f9b14698f200038c746a58fde55  # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
  cd $SRC_DIR/build/src && $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang -DOPENMP -I$SRC_DIR/build/generated -I$SRC_DIR/src -I$SRC_DIR/lib/ffindex/src -I$SRC_DIR/lib/simde -I$SRC_DIR/lib/simd -I$SRC_DIR/build/src -I$SRC_DIR/src/cs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/hhsuite-3.3.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -std=c0x -fsigned-char  -msse4.1 -mfpmath=sse -fopenmp=libomp -fno-strict-aliasing -O3 -DNDEBUG -isysroot /Applications/Xcode_15.0.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -mmacosx-version-min=10.13 -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c $SRC_DIR/src/hhviterbialgorithm.cpp
  [  9%] Linking CXX static library libhhviterbialgorithm_with_celloff.a
  /opt/mambaforge/envs/bioconda/conda-bld/hhsuite_1717953464012/work/src/a3m_compress.cpp:504:26: error: no member named 'ptr_fun' in namespace 'std'
            std::not1(std::ptr_fun<int, int>(std::isspace))).base(), s.end());
                      ~~~~~^
  /opt/mambaforge/envs/bioconda/conda-bld/hhsuite_1717953464012/work/src/a3m_compress.cpp:504:37: error: expected '(' for function-style cast or type construction
            std::not1(std::ptr_fun<int, int>(std::isspace))).base(), s.end());
                                   ~~~^
  /opt/mambaforge/envs/bioconda/conda-bld/hhsuite_1717953464012/work/src/a3m_compress.cpp:504:42: error: expected '(' for function-style cast or type construction
            std::not1(std::ptr_fun<int, int>(std::isspace))).base(), s.end());
                                        ~~~^
  /opt/mambaforge/envs/bioconda/conda-bld/hhsuite_1717953464012/work/src/a3m_compress.cpp:504:16: error: no member named 'not1' in namespace 'std'
            std::not1(std::ptr_fun<int, int>(std::isspace))).base(), s.end());
            ~~~~~^
  4 errors generated.
  make[2]: *** [src/CMakeFiles/A3M_COMPRESS.dir/build.make:76: src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o] Error 1
  make[1]: *** [CMakeFiles/Makefile2:840: src/CMakeFiles/A3M_COMPRESS.dir/all] Error 2
  make[1]: *** Waiting for unfinished jobs....
  make: *** [Makefile:156: all] Error 2
  Traceback (most recent call last):
  cd $SRC_DIR/build/src && $BUILD_PREFIX/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake
  cd $SRC_DIR/build/src && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1
    File "/opt/mambaforge/envs/bioconda/bin/conda-build", line 11, in <module>
  $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o
  $BUILD_PREFIX/bin/llvm-ranlib libhhviterbialgorithm_with_celloff.a
  make[2]: Leaving directory '$SRC_DIR/build'
  [  9%] Built target hhviterbialgorithm_with_celloff
  make  -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend
      sys.exit(execute())
  make[2]: Entering directory '$SRC_DIR/build'
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 590, in execute
      api.build(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/api.py", line 250, in build
      return build_tree(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 3638, in build_tree
      packages_from_this = build(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2506, in build
      utils.check_call_env(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/utils.py", line 405, in check_call_env
      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
  cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/src $SRC_DIR/build $SRC_DIR/build/src $SRC_DIR/build/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color="
  make[2]: Leaving directory '$SRC_DIR/build'
  make  -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build
  make[2]: Entering directory '$SRC_DIR/build'
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/utils.py", line 381, in _func_defaulting_env_to_os_environ
      raise subprocess.CalledProcessError(proc.returncode, _args)
  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/hhsuite_1717953464012/work/conda_build.sh']' returned non-zero exit status 2.
  [ 10%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o
  cd $SRC_DIR/build/src && $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang -DOPENMP -I$SRC_DIR/build/generated -I$SRC_DIR/src -I$SRC_DIR/lib/ffindex/src -I$SRC_DIR/lib/simde -I$SRC_DIR/lib/simd -I$SRC_DIR/build/src -I$SRC_DIR/src/cs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/hhsuite-3.3.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -std=c0x -fsigned-char  -msse4.1 -mfpmath=sse -fopenmp=libomp -fno-strict-aliasing -O3 -DNDEBUG -isysroot /Applications/Xcode_15.0.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -mmacosx-version-min=10.13 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c $SRC_DIR/src/hhviterbialgorithm.cpp
  [ 11%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a
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  $BUILD_PREFIX/bin/llvm-ranlib libhhviterbialgorithm_with_celloff_and_ss.a
  make[2]: Leaving directory '$SRC_DIR/build'
  [ 11%] Built target hhviterbialgorithm_with_celloff_and_ss
  make  -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend
  make[2]: Entering directory '$SRC_DIR/build'
  cd $SRC_DIR/build && $BUILD_PREFIX/bin/cmake -E cmake_depends "Unix Makefiles" $SRC_DIR $SRC_DIR/src/cs $SRC_DIR/build $SRC_DIR/build/src/cs $SRC_DIR/build/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color="
  make[2]: Leaving directory '$SRC_DIR/build'
  make  -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build
  make[2]: Entering directory '$SRC_DIR/build'
  [ 12%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o
  cd $SRC_DIR/build/src/cs && $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang -DOPENMP -I$SRC_DIR/build/generated -I$SRC_DIR/src -I$SRC_DIR/lib/ffindex/src -I$SRC_DIR/lib/simde -I$SRC_DIR/lib/simd -I$SRC_DIR/build/src -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/hhsuite-3.3.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -std=c0x -fsigned-char  -msse4.1 -mfpmath=sse -fopenmp=libomp -fno-strict-aliasing -O3 -DNDEBUG -isysroot /Applications/Xcode_15.0.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -mmacosx-version-min=10.13 -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c $SRC_DIR/src/cs/aa.cc
  [ 13%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o
  cd $SRC_DIR/build/src/cs && $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang -DOPENMP -I$SRC_DIR/build/generated -I$SRC_DIR/src -I$SRC_DIR/lib/ffindex/src -I$SRC_DIR/lib/simde -I$SRC_DIR/lib/simd -I$SRC_DIR/build/src -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/hhsuite-3.3.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -std=c0x -fsigned-char  -msse4.1 -mfpmath=sse -fopenmp=libomp -fno-strict-aliasing -O3 -DNDEBUG -isysroot /Applications/Xcode_15.0.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -mmacosx-version-min=10.13 -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c $SRC_DIR/src/cs/as.cc
  [ 14%] Linking CXX static library libhhviterbialgorithm_and_ss.a
  cd $SRC_DIR/build/src && $BUILD_PREFIX/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake
  cd $SRC_DIR/build/src && $BUILD_PREFIX/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1
  $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o
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  make[2]: Leaving directory '$SRC_DIR/build'
  [ 14%] Built target hhviterbialgorithm_and_ss
  make  -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend
  make[2]: Entering directory '$SRC_DIR/build'
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  make[2]: Entering directory '$SRC_DIR/build'
  [ 14%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o
  cd $SRC_DIR/build/src && $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang -DOPENMP -I$SRC_DIR/build/generated -I$SRC_DIR/src -I$SRC_DIR/lib/ffindex/src -I$SRC_DIR/lib/simde -I$SRC_DIR/lib/simd -I$SRC_DIR/build/src -I$SRC_DIR/src/cs -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/hhsuite-3.3.0 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -std=c0x -fsigned-char  -msse4.1 -mfpmath=sse -fopenmp=libomp -fno-strict-aliasing -O3 -DNDEBUG -isysroot /Applications/Xcode_15.0.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -mmacosx-version-min=10.13 -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c $SRC_DIR/src/a3m_compress.cpp
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  [ 16%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o
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# Last 100 lines of the build log.
category: |-
  compiler error
