# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Feb  4 05:58:07 2025
# ------------------------------------------------

package:
  name: hatchet
  version: 2.1.1
source:
  - sha256: c02d997eb266580af6f52990fe053d7cf7734403d9801250b1c6de554875f4bf
    url: https://github.com/raphael-group/hatchet/archive/v2.1.1.tar.gz
  - folder: gurobi902
    sha256: 6527581aef11c3e425c52993d108861ef53ec13971d9931861bf9c88d9d111f3
    url: https://packages.gurobi.com/9.0/gurobi9.0.2_linux64.tar.gz
build:
  entry_points:
    - hatchet = hatchet.__main__:main
  number: '1'
  run_exports:
    - hatchet >=2.1.1,<3.0a0
  string: py39h2de1943_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - binutils_linux-64 2.43 h4852527_2
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.4 hb9d3cd8_0
    - ca-certificates 2025.1.31 hbcca054_0
    - cmake 3.31.5 h74e3db0_0
    - gcc_impl_linux-64 13.3.0 hfea6d02_1
    - gcc_linux-64 13.3.0 hc28eda2_7
    - gxx_impl_linux-64 13.3.0 hdbfa832_1
    - gxx_linux-64 13.3.0 h6834431_7
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libcurl 8.11.1 h332b0f4_0
    - libedit 3.1.20250104 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libexpat 2.6.4 h5888daf_0
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 13.3.0 h84ea5a7_101
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - liblzma 5.6.4 hb9d3cd8_0
    - libnghttp2 1.64.0 h161d5f1_0
    - libsanitizer 13.3.0 heb74ff8_1
    - libssh2 1.11.1 hf672d98_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-devel_linux-64 13.3.0 h84ea5a7_101
    - libstdcxx-ng 14.2.0 h4852527_1
    - libuv 1.50.0 hb9d3cd8_0
    - libzlib 1.3.1 hb9d3cd8_2
    - make 4.4.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_3
    - openssl 3.4.0 h7b32b05_1
    - rhash 1.4.5 hb9d3cd8_0
    - sysroot_linux-64 2.17 h0157908_18
    - tzdata 2025a h78e105d_0
    - zstd 1.5.6 ha6fb4c9_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h4bc722e_7
    - ca-certificates 2025.1.31 hbcca054_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libffi 3.4.2 h7f98852_5
    - libgcc 14.2.0 h77fa898_1
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - liblzma 5.6.4 hb9d3cd8_0
    - libnsl 2.0.1 hd590300_0
    - libsqlite 3.48.0 hee588c1_1
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libuuid 2.38.1 h0b41bf4_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.3.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_3
    - openssl 3.4.0 h7b32b05_1
    - pip 25.0 pyh8b19718_0
    - python 3.9.21 h9c0c6dc_1_cpython
    - readline 8.2 h8228510_1
    - setuptools 75.8.0 pyhff2d567_0
    - tk 8.6.13 noxft_h4845f30_101
    - tzdata 2025a h78e105d_0
    - wheel 0.45.1 pyhd8ed1ab_1
  run:
    - bcftools
    - biopython
    - hmmlearn
    - libgcc >=13
    - libstdcxx >=13
    - matplotlib-base
    - mosdepth
    - numpy <2
    - pandas
    - picard-slim
    - psutil
    - pybedtools
    - pyomo
    - pysam
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - requests
    - samtools
    - scikit-learn
    - scipy
    - seaborn-base
    - statsmodels
    - tabix
test:
  imports:
    - hatchet
about:
  description: 'HATCHet is an algorithm to infer allele and clone-specific copy-number

    aberrations (CNAs), clone proportions, and whole-genome duplications

    (WGD) for several tumor clones jointly from multiple bulk-tumor samples

    of the same patient or from a single bulk-tumor sample.

    '
  dev_url: https://github.com/raphael-group/hatchet
  doc_url: https://raphael-group.github.io/hatchet
  home: https://github.com/raphael-group/hatchet
  license: BSD-3-Clause
  license_family: BSD
  license_file: LICENSE
  summary: A package to infer allele and clone-specific copy-number aberrations (CNAs).
extra:
  copy_test_source_files: true
  final: true
