# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Sun Jul  3 23:14:15 2022
# ------------------------------------------------

package:
  name: hatchet
  version: 1.0.1
source:
  - sha256: 29e86bef46b32a41ec56b81aae5c04b8a3b2263a3ebfc4354620fb2d72457aa5
    url: https://github.com/raphael-group/hatchet/archive/v1.0.1.zip
  - folder: gurobi902
    sha256: 6527581aef11c3e425c52993d108861ef53ec13971d9931861bf9c88d9d111f3
    url: https://packages.gurobi.com/9.0/gurobi9.0.2_linux64.tar.gz
build:
  number: '0'
  string: py39hc16433a_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_10
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.6.15 ha878542_0
    - cmake 3.23.2 h5432695_0
    - expat 2.4.8 h27087fc_0
    - gcc_impl_linux-64 10.3.0 hf2f2afa_16
    - gcc_linux-64 10.3.0 hc39de41_10
    - gxx_impl_linux-64 10.3.0 hf2f2afa_16
    - gxx_linux-64 10.3.0 h2593f52_10
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h08a2579_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libcurl 7.83.1 h2283fc2_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-devel_linux-64 10.3.0 he6cfe16_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libnghttp2 1.47.0 he49606f_0
    - libsanitizer 10.3.0 h26c7422_16
    - libssh2 1.10.0 ha35d2d1_2
    - libstdcxx-devel_linux-64 10.3.0 he6cfe16_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libuv 1.43.0 h7f98852_0
    - libzlib 1.2.12 h166bdaf_1
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.4 h166bdaf_2
    - rhash 1.4.3 h166bdaf_0
    - sysroot_linux-64 2.12 he073ed8_15
    - xz 5.2.5 h516909a_1
    - zlib 1.2.12 h166bdaf_1
    - zstd 1.5.2 h8a70e8d_2
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2022.6.15 ha878542_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libnsl 2.0.0 h7f98852_0
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libuuid 2.32.1 h7f98852_1000
    - libzlib 1.2.12 h166bdaf_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.4 h166bdaf_2
    - pip 22.1.2 pyhd8ed1ab_0
    - python 3.9.13 h2660328_0_cpython
    - python_abi 3.9 2_cp39
    - readline 8.1.2 h0f457ee_0
    - setuptools 62.6.0 py39hf3d152e_0
    - sqlite 3.39.0 h4ff8645_0
    - tk 8.6.12 h27826a3_0
    - tzdata 2022a h191b570_0
    - wheel 0.37.1 pyhd8ed1ab_0
    - xz 5.2.5 h516909a_1
    - zlib 1.2.12 h166bdaf_1
  run:
    - bcftools>=1.9
    - biopython
    - hmmlearn
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - matplotlib-base
    - mosdepth
    - pandas
    - picard
    - psutil
    - pyomo
    - pysam
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - requests
    - samtools>=1.9
    - scikit-learn
    - scipy
    - seaborn
    - tabix
test:
  imports:
    - hatchet
about:
  description: 'HATCHet is an algorithm to infer allele and clone-specific copy-number

    aberrations (CNAs), clone proportions, and whole-genome duplications

    (WGD) for several tumor clones jointly from multiple bulk-tumor samples

    of the same patient or from a single bulk-tumor sample.

    '
  home: https://github.com/raphael-group/hatchet
  license: BSD-3
  summary: Holistic Allele-specific Tumor Copy-number Heterogeneity
extra:
  copy_test_source_files: true
  final: true
