# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Sep 10 18:23:24 2021
# ------------------------------------------------

package:
  name: hatchet
  version: 0.4.7
source:
  - sha256: 33fc295c3f388c26485647e15ac2453842deb02e549d40d487f905c29b69a5b9
    url: https://github.com/raphael-group/hatchet/archive/v0.4.7.zip
  - folder: gurobi902
    sha256: 6527581aef11c3e425c52993d108861ef53ec13971d9931861bf9c88d9d111f3
    url: https://packages.gurobi.com/9.0/gurobi9.0.2_linux64.tar.gz
build:
  number: '0'
  string: py37h22450f8_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.2 h7f98852_0
    - ca-certificates 2021.5.30 ha878542_0
    - cmake 3.21.2 h8897547_0
    - expat 2.4.1 h9c3ff4c_0
    - gcc_impl_linux-64 9.4.0 h03d3576_8
    - gcc_linux-64 9.4.0 h391b98a_1
    - gxx_impl_linux-64 9.4.0 h03d3576_8
    - gxx_linux-64 9.4.0 h0316aca_1
    - kernel-headers_linux-64 2.6.32 he073ed8_14
    - krb5 1.19.2 hcc1bbae_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libcurl 7.78.0 h2574ce0_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-devel_linux-64 9.4.0 hd854feb_8
    - libgcc-ng 11.1.0 hc902ee8_8
    - libgomp 11.1.0 hc902ee8_8
    - libnghttp2 1.43.0 h812cca2_0
    - libsanitizer 9.4.0 h79bfe98_8
    - libssh2 1.10.0 ha56f1ee_0
    - libstdcxx-devel_linux-64 9.4.0 hd854feb_8
    - libstdcxx-ng 11.1.0 h56837e0_8
    - libuv 1.42.0 h7f98852_0
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1l h7f98852_0
    - rhash 1.4.1 h7f98852_0
    - sysroot_linux-64 2.12 he073ed8_14
    - tk 8.6.11 h27826a3_1
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.5.0 ha95c52a_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - ca-certificates 2021.5.30 ha878542_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libffi 3.3 h58526e2_2
    - libgcc-ng 11.1.0 hc902ee8_8
    - libgomp 11.1.0 hc902ee8_8
    - libstdcxx-ng 11.1.0 h56837e0_8
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1l h7f98852_0
    - pip 21.2.4 pyhd8ed1ab_0
    - python 3.7.10 hffdb5ce_100_cpython
    - python_abi 3.7 2_cp37m
    - readline 8.1 h46c0cb4_0
    - setuptools 58.0.4 py37h89c1867_0
    - sqlite 3.36.0 h9cd32fc_1
    - tk 8.6.11 h27826a3_1
    - wheel 0.37.0 pyhd8ed1ab_1
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
  run:
    - bcftools
    - biopython
    - libgcc-ng >=9.4.0
    - libstdcxx-ng >=9.4.0
    - matplotlib-base
    - pandas
    - psutil
    - pyomo
    - pysam
    - python >=3.7,<3.8.0a0
    - python_abi 3.7.* *_cp37m
    - requests
    - samtools
    - scikit-learn
    - scipy
    - seaborn
test:
  imports:
    - hatchet
about:
  description: 'HATCHet is an algorithm to infer allele and clone-specific copy-number

    aberrations (CNAs), clone proportions, and whole-genome duplications

    (WGD) for several tumor clones jointly from multiple bulk-tumor samples

    of the same patient or from a single bulk-tumor sample.

    '
  home: https://github.com/raphael-group/hatchet
  license: BSD-3
  summary: Holistic Allele-specific Tumor Copy-number Heterogeneity
extra:
  copy_test_source_files: true
  final: true
