# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Feb 22 19:56:14 2022
# ------------------------------------------------

package:
  name: hatchet
  version: 0.4.12
source:
  - sha256: e41fa49c5cd2b24e092f475fee67e9bd3400272f3f2900fc1379124d0e4575c0
    url: https://github.com/raphael-group/hatchet/archive/v0.4.12.zip
  - folder: gurobi902
    sha256: 6527581aef11c3e425c52993d108861ef53ec13971d9931861bf9c88d9d111f3
    url: https://packages.gurobi.com/9.0/gurobi9.0.2_linux64.tar.gz
build:
  number: '1'
  string: py39hc16433a_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_5
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2021.10.8 ha878542_0
    - cmake 3.22.2 h1021d11_0
    - expat 2.4.6 h27087fc_0
    - gcc_impl_linux-64 10.3.0 hf2f2afa_12
    - gcc_linux-64 10.3.0 hc39de41_5
    - gxx_impl_linux-64 10.3.0 hf2f2afa_12
    - gxx_linux-64 10.3.0 h2593f52_5
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - krb5 1.19.2 h48eae69_3
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libcurl 7.81.0 h494985f_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-devel_linux-64 10.3.0 he6cfe16_12
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgomp 11.2.0 h1d223b6_12
    - libnghttp2 1.46.0 ha19adfc_0
    - libsanitizer 10.3.0 h26c7422_12
    - libssh2 1.10.0 ha35d2d1_2
    - libstdcxx-devel_linux-64 10.3.0 he6cfe16_12
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - libuv 1.43.0 h7f98852_0
    - libzlib 1.2.11 h36c2ea0_1013
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h9c3ff4c_0
    - openssl 3.0.0 h7f98852_2
    - rhash 1.4.1 h7f98852_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
    - zstd 1.5.2 ha95c52a_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2021.10.8 ha878542_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgomp 11.2.0 h1d223b6_12
    - libnsl 2.0.0 h7f98852_0
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - libuuid 2.32.1 h7f98852_1000
    - libzlib 1.2.11 h36c2ea0_1013
    - ncurses 6.3 h9c3ff4c_0
    - openssl 3.0.0 h7f98852_2
    - pip 22.0.3 pyhd8ed1ab_0
    - python 3.9.10 hc74c709_2_cpython
    - python_abi 3.9 2_cp39
    - readline 8.1 h46c0cb4_0
    - setuptools 60.9.3 py39hf3d152e_0
    - sqlite 3.37.0 h9cd32fc_0
    - tk 8.6.12 h27826a3_0
    - tzdata 2021e he74cb21_0
    - wheel 0.37.1 pyhd8ed1ab_0
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
  run:
    - bcftools
    - biopython
    - libgcc-ng >=10.3.0
    - libstdcxx-ng >=10.3.0
    - matplotlib-base
    - pandas
    - psutil
    - pyomo
    - pysam
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - requests
    - samtools
    - scikit-learn
    - scipy
    - seaborn
test:
  imports:
    - hatchet
about:
  description: 'HATCHet is an algorithm to infer allele and clone-specific copy-number

    aberrations (CNAs), clone proportions, and whole-genome duplications

    (WGD) for several tumor clones jointly from multiple bulk-tumor samples

    of the same patient or from a single bulk-tumor sample.

    '
  home: https://github.com/raphael-group/hatchet
  license: BSD-3
  summary: Holistic Allele-specific Tumor Copy-number Heterogeneity
extra:
  copy_test_source_files: true
  final: true
