

set -ex



curl -O https://raw.githubusercontent.com/dmaticzka/GraphProt/v1.1.7/tests/testclip.train.negatives.fa
curl -O https://raw.githubusercontent.com/dmaticzka/GraphProt/v1.1.7/tests/testclip.train.positives.fa
curl -O https://raw.githubusercontent.com/dmaticzka/GraphProt/v1.1.7/tests/test_data_full_A.train.fa
curl -O https://raw.githubusercontent.com/dmaticzka/GraphProt/v1.1.7/tests/test_data_full_A.train.affys
curl -O https://raw.githubusercontent.com/dmaticzka/GraphProt/v1.1.7/tests/CL_ls.params
curl -O https://raw.githubusercontent.com/dmaticzka/GraphProt/v1.1.7/tests/CL_train.model
curl -O https://raw.githubusercontent.com/dmaticzka/GraphProt/v1.1.7/tests/REG_ls.params
GraphProt.pl -mode classification -action ls --onlyseq \ -fasta testclip.train.positives.fa \ -negfasta testclip.train.negatives.fa \
GraphProt.pl \ -mode classification -action cv --onlyseq -fasta testclip.train.positives.fa -negfasta testclip.train.negatives.fa -params CL_ls.params
GraphProt.pl -mode classification -action train -fasta testclip.train.positives.fa -negfasta testclip.train.negatives.fa -abstraction 1 -R 0 -D 0 -epochs 2 -lambda 0.1 -bitsize 10
GraphProt.pl -mode classification -action motif -fasta testclip.train.positives.fa -model CL_train.model -abstraction 1 -R 0 -D 0 -epochs 2 -lambda 0.1 -bitsize 10
GraphProt.pl -mode regression -action ls --onlyseq -fasta test_data_full_A.train.fa -affinities test_data_full_A.train.affys -abstraction 1 -R 0 -D 0 -epsilon 0.11 -c 11 -bitsize 10
GraphProt.pl -mode regression -action cv --onlyseq -fasta test_data_full_A.train.fa -affinities test_data_full_A.train.affys -params REG_ls.params
GraphProt.pl -mode regression -action train -fasta test_data_full_A.train.fa -affinities test_data_full_A.train.affys -abstraction 1 -R 0 -D 0 -epsilon 0.11 -c 11 -bitsize 10
exit 0
