# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Oct  4 09:13:08 2022
# ------------------------------------------------

package:
  name: gap2seq
  version: '3.1'
source:
  - sha256: 2df2143932ece6224817d1aa80e635ebf6f3f6f91ccb0b94ce3951a354071d61
    url: https://github.com/rikuu/Gap2Seq/archive/v3.1.tar.gz
  - folder: thirdparty/gatb-core
    sha256: 2a20b8ec21d2876dbeffd43de894f7d43f8b62d4431f0c7ae41b630d3d387188
    url: https://github.com/GATB/gatb-core/archive/v1.4.1.tar.gz
build:
  number: '3'
  string: py37ha6b2a8d_3
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils 2.36.1 hdd6e379_2
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_10
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.9.24 ha878542_0
    - cmake 3.24.2 h5432695_0
    - coreutils 9.1 h166bdaf_0
    - expat 2.4.9 h27087fc_0
    - gcc_impl_linux-64 10.4.0 h7ee1905_16
    - gcc_linux-64 10.4.0 h9215b83_10
    - gxx_impl_linux-64 10.4.0 h7ee1905_16
    - gxx_linux-64 10.4.0 h6e491c6_10
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h08a2579_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libcurl 7.85.0 h2283fc2_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-devel_linux-64 10.4.0 h74af60c_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libnghttp2 1.47.0 hff17c54_1
    - libnsl 2.0.0 h7f98852_0
    - libsanitizer 10.4.0 hde28e3b_16
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-devel_linux-64 10.4.0 h74af60c_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libuv 1.44.2 h166bdaf_0
    - libzlib 1.2.12 h166bdaf_4
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.5 h166bdaf_2
    - perl 5.32.1 2_h7f98852_perl5
    - pkg-config 0.29.2 h36c2ea0_1008
    - rhash 1.4.3 h166bdaf_0
    - sysroot_linux-64 2.12 he073ed8_15
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.12 h166bdaf_4
    - zstd 1.5.2 h6239696_4
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - boost-cpp 1.74.0 h75c5d50_8
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.9.24 ha878542_0
    - htslib 1.16 h6bc39ce_0
    - icu 70.1 h27087fc_0
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h3790be6_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libcurl 7.85.0 h7bff187_0
    - libdeflate 1.13 h166bdaf_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libnghttp2 1.47.0 hdcd2b5c_1
    - libnsl 2.0.0 h7f98852_0
    - libsqlite 3.39.4 h753d276_0
    - libssh2 1.10.0 haa6b8db_3
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libzlib 1.2.12 h166bdaf_4
    - ncurses 6.3 h27087fc_1
    - openssl 1.1.1q h166bdaf_0
    - pip 22.2.2 pyhd8ed1ab_0
    - python 3.7.12 hb7a2778_100_cpython
    - readline 8.1.2 h0f457ee_0
    - setuptools 65.4.1 pyhd8ed1ab_0
    - sqlite 3.39.4 h4ff8645_0
    - tk 8.6.12 h27826a3_0
    - wheel 0.37.1 pyhd8ed1ab_0
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.12 h166bdaf_4
    - zstd 1.5.2 h6239696_4
  run:
    - htslib >=1.16,<1.17.0a0
    - libgcc-ng >=12
    - libstdcxx-ng >=12
    - python >=3.7,<3.8.0a0
    - python_abi 3.7.* *_cp37m
    - zlib >=1.2.12,<1.3.0a0
test:
  commands:
    - GapMerger -help 2>&1 | grep "GapMerger options"  > /dev/null
    - GapCutter -help 2>&1 | grep "GapCutter options"  > /dev/null
    - Gap2Seq-core -help 2>&1 | grep "Gap2Seq options"  > /dev/null
    - 'Gap2Seq -h 2>&1 | grep "usage: Gap2Seq"  > /dev/null'
about:
  home: https://www.cs.helsinki.fi/u/lmsalmel/Gap2Seq/
  license: GPLv3
  license_file: LICENCE
  summary: Gap2Seq is a tool for filling gaps between contigs in genome assemblies.
extra:
  copy_test_source_files: true
  final: true
  notes: Gap2Seq is only tested on Linux x86_64 by its author.
  recipe-maintainers:
    - notestaff
