.gitmodules
.travis.yml
COPYING
MANIFEST.in
README.rst
_config.yml
configure
configure.ac
gplheader.txt
gplheader_cpp.txt
index.md
install-sh
readthedocs.yml
requirements.txt
requirements.txt.in
setup.cfg
setup.py
setup.py.in
doc/Makefile
doc/conf.py
doc/conf.py.in
doc/environment.yml
doc/fwdpp.doxygen
doc/fwdpy11.doxygen
doc/fwdpy11.doxygen.in
doc/index.rst
doc/advanced/heritability.rst
doc/advanced/manip.rst
doc/advanced/mpi.rst
doc/advanced/mpi2.rst
doc/examples/DataMatrix.rst
doc/examples/custom_additive.cpp
doc/examples/custom_stateless_genotype.cpp
doc/examples/customgvalue.rst
doc/examples/parallel_simulation.rst
doc/examples/pickling.rst
doc/examples/processingpops.rst
doc/examples/qtrait.rst
doc/examples/stateful_fitness.rst
doc/pages/changelog.rst
doc/pages/conventions.rst
doc/pages/definitions.rst
doc/pages/deprecated.rst
doc/pages/model_params.rst
doc/pages/pubs.rst
doc/pages/recorders.rst
doc/pages/regions.rst
doc/pages/rng.rst
doc/pages/scratch.rst
doc/pages/todo.rst
doc/pages/types.rst
doc/performance/RecorderPerformance.ipynb
doc/performance/UsingCython.ipynb
doc/performance/processingpops_np.rst
doc/performance/sampler.cpp
doc/performance/sampler_pyfunction.cpp
fwdpy11/__init__.py
fwdpy11/__init__.py.in
fwdpy11/demography.py
fwdpy11/dev.py
fwdpy11/ezparams.py
fwdpy11/internal.py
fwdpy11/model_params.py
fwdpy11/regions.py
fwdpy11/temporal_samplers.py
fwdpy11/wright_fisher.py
fwdpy11/wright_fisher_qtrait.py
fwdpy11.egg-info/PKG-INFO
fwdpy11.egg-info/SOURCES.txt
fwdpy11.egg-info/dependency_links.txt
fwdpy11.egg-info/not-zip-safe
fwdpy11.egg-info/requires.txt
fwdpy11.egg-info/top_level.txt
fwdpy11/headers/fwdpp
fwdpy11/headers/fwdpp/examples/common_ind.hpp
fwdpy11/headers/fwdpp/fwdpp/IO.hpp
fwdpy11/headers/fwdpp/fwdpp/IO.tcc
fwdpy11/headers/fwdpp/fwdpp/debug.hpp
fwdpy11/headers/fwdpp/fwdpp/demography.hpp
fwdpy11/headers/fwdpp/fwdpp/diploid.hh
fwdpy11/headers/fwdpp/fwdpp/fitness_models.hpp
fwdpy11/headers/fwdpp/fwdpp/forward_types.hpp
fwdpy11/headers/fwdpp/fwdpp/fwd_functional.hpp
fwdpy11/headers/fwdpp/fwdpp/insertion_policies.hpp
fwdpy11/headers/fwdpp/fwdpp/interlocus_recombination.hpp
fwdpy11/headers/fwdpp/fwdpp/mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/mutation.tcc
fwdpy11/headers/fwdpp/fwdpp/recombination.hpp
fwdpy11/headers/fwdpp/fwdpp/recombination.tcc
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/sample_diploid.tcc
fwdpy11/headers/fwdpp/fwdpp/sampling_functions.hpp
fwdpy11/headers/fwdpp/fwdpp/sampling_functions.tcc
fwdpy11/headers/fwdpp/fwdpp/sugar.hpp
fwdpy11/headers/fwdpp/fwdpp/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/util.hpp
fwdpy11/headers/fwdpp/fwdpp/version.hpp
fwdpy11/headers/fwdpp/fwdpp/experimental/dispatch.hpp
fwdpy11/headers/fwdpp/fwdpp/experimental/sample_diploid.hpp
fwdpy11/headers/fwdpp/fwdpp/experimental/sample_diploid_mloc.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/callbacks.hpp
fwdpy11/headers/fwdpp/fwdpp/extensions/regions.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/IOhelp.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/demography_details.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/gamete_cleaner.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/gsl_discrete.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/ms_sampling.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/multilocus_rec.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/mutation_internal.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/rec_gamete_updater.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/recombination_common.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/recycling.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/sample_diploid_helpers.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/type_traits.hpp
fwdpy11/headers/fwdpp/fwdpp/internal/void_t.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/GSLrng_t.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/add_mutation.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/change_neutral.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/demography.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/generalmut.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/infsites.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/matrix.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/matrix_details.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/metapop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/multiloc.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/popgenmut.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/sampling.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/serialization.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/singlepop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/sugar.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/gsl/deleter.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/gsl/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/metapop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/multiloc.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/popbase.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/singlepop.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/poptypes/tags.hpp
fwdpy11/headers/fwdpp/fwdpp/sugar/sampling/sampling_details.hpp
fwdpy11/headers/fwdpp/fwdpp/tags/tags.hpp
fwdpy11/headers/fwdpp/python_examples/python_common.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/fwdpp_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/fixtures/sugar_fixtures.hpp
fwdpy11/headers/fwdpp/testsuite/util/custom_dip.hpp
fwdpy11/headers/fwdpp/testsuite/util/migpop.hpp
fwdpy11/headers/fwdpp/testsuite/util/quick_evolve_sugar.hpp
fwdpy11/headers/fwdpy11/multilocus.hpp
fwdpy11/headers/fwdpy11/rng.hpp
fwdpy11/headers/fwdpy11/samplers.hpp
fwdpy11/headers/fwdpy11/serialization.hpp
fwdpy11/headers/fwdpy11/sim_functions.hpp
fwdpy11/headers/fwdpy11/types.hpp
fwdpy11/headers/fwdpy11/evolve/mlocuspop.hpp
fwdpy11/headers/fwdpy11/evolve/qtrait_api.hpp
fwdpy11/headers/fwdpy11/evolve/slocuspop.hpp
fwdpy11/headers/fwdpy11/fitness/fitness.hpp
fwdpy11/headers/fwdpy11/fitness/multi_locus_fitness.hpp
fwdpy11/headers/fwdpy11/fitness/single_locus_fitness.hpp
fwdpy11/headers/fwdpy11/fitness/single_locus_stateless_fitness.hpp
fwdpy11/headers/fwdpy11/opaque/opaque_types.hpp
fwdpy11/headers/fwdpy11/rules/qtrait.hpp
fwdpy11/headers/fwdpy11/rules/rules_base.hpp
fwdpy11/headers/fwdpy11/rules/wf_rules.hpp
fwdpy11/src/fwdpp_extensions.cc
fwdpy11/src/fwdpp_types.cc
fwdpy11/src/fwdpy11_fitness.cc
fwdpy11/src/fwdpy11_sampling.cc
fwdpy11/src/fwdpy11_trait_values.cc
fwdpy11/src/fwdpy11_types.cc
fwdpy11/src/fwdpy11_util.cc
fwdpy11/src/fwdpy11_util_add_mutation.cc
fwdpy11/src/fwdpy11_util_add_mutation.hpp
fwdpy11/src/gsl_random.cc
fwdpy11/src/multilocus.cc
fwdpy11/src/python_genetic_values.cc
fwdpy11/src/wfevolve.cc
fwdpy11/src/wfevolve_qtrait.cc
m4/ax_cxx_compile_stdxx_11.m4
m4/python.m4
tests/MeanFitness.pyx
tests/custom_additive.cpp
tests/custom_stateless_genotype.cpp
tests/mean_sel_coeff.pyx
tests/quick_pops.py
tests/snowdrift.cpp
tests/test_DataMatrix.py
tests/test_MlocusPop.py
tests/test_ModelParams.py
tests/test_SlocusPop.py
tests/test_custom_stateless_fitness.py
tests/test_fitness.py
tests/test_fitness_callback_polymorphism.py
tests/test_fixation_properties.py
tests/test_fwdpp_types.py
tests/test_multilocus.py
tests/test_numpy.py
tests/test_opaque.py
tests/test_polymorphism.cpp
tests/test_python_genetic_values.py
tests/test_regions.py
tests/test_simple_parallel.py
tests/test_stateful_fitness.py
tests/test_trait_values.py
tests/test_updater.py
tests/test_util.py
tests/test_wright_fisher.py