Package: epicseg
Type: Package
Title: Chromatin Segmentation in R
Version: 1.0
Date: 2014-12-05
Author: Alessandro Mammana
Maintainer: Alessandro Mammana <mammana@molgen.mpg.de>
Description: EpiCSeg (Epigenome Count-based Segmentation) is a software for
    annotating the genome based on the state of the chromatin. It provides
    tools for extracting count data from BAM files, typlically corresponding
    to ChIP-seq experiments for histone marks (but other choices are possible)
    it learns a statistical model for the read counts based on a HMM,
    it annotates the genome, and it provides tools for displaying
    and analyzing the obtained models and segmentations. EpiCSeg can be used
    as an R package or from the command line via Rscript.
License: GPL-3
SystemRequirements: C++11
Depends: R (>= 3.1.0)
Imports: methods, parallel, RColorBrewer, Rcpp (>= 0.11.3), S4Vectors,
        IRanges, GenomicRanges, kfoots, bamsignals, edgeR
LinkingTo: Rcpp
Suggests: testthat, knitr
RoxygenNote: 5.0.1
Built: R 4.2.3; x86_64-conda-linux-gnu; 2023-05-28 00:24:12 UTC; unix
