# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Mar 11 14:19:35 2019
# ------------------------------------------------

package:
    name: epicseg
    version: '1.0'
source:
    sha256: e3094ad54044c19a9c7fd027c4b64c9ae7793bed84cec3442aedf495d0fb4b2b
    url: https://github.com/BIMSBbioinfo/epicseg/archive/v1.0.tar.gz
build:
    number: '2'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351h14c3975_2
requirements:
    build:
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_6
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_6
        - libgcc-ng 7.3.0 hdf63c60_0
        - libstdcxx-ng 7.3.0 hdf63c60_0
    host:
        - _r-mutex 1.0.0 anacondar_1
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_3
        - bioconductor-bamsignals 1.14.0 r351hf484d3e_0
        - bioconductor-biocgenerics 0.28.0 r351_1
        - bioconductor-edger 3.24.1 r351hf484d3e_0
        - bioconductor-genomeinfodb 1.18.1 r351_0
        - bioconductor-genomeinfodbdata 1.2.0 r351_0
        - bioconductor-genomicranges 1.34.0 r351h14c3975_0
        - bioconductor-iranges 2.16.0 r351h14c3975_0
        - bioconductor-limma 3.38.3 r351h14c3975_0
        - bioconductor-rhtslib 1.14.0 r351hd051131_0
        - bioconductor-s4vectors 0.20.1 r351h14c3975_0
        - bioconductor-xvector 0.22.0 r351h14c3975_0
        - bioconductor-zlibbioc 1.28.0 r351h14c3975_0
        - bwidget 1.9.11 1
        - bzip2 1.0.6 h14c3975_1002
        - ca-certificates 2019.3.9 hecc5488_0
        - cairo 1.14.12 h80bd089_1005
        - curl 7.64.0 h646f8bb_2
        - fontconfig 2.13.1 h2176d3f_1000
        - freetype 2.9.1 h94bbf69_1005
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_3
        - gettext 0.19.8.1 h9745a5d_1001
        - gfortran_impl_linux-64 7.3.0 hdf63c60_1
        - gfortran_linux-64 7.3.0 h553295d_3
        - glib 2.56.2 had28632_1001
        - graphite2 1.3.13 hf484d3e_1000
        - gxx_impl_linux-64 7.3.0 hdf63c60_1
        - gxx_linux-64 7.3.0 h553295d_3
        - harfbuzz 1.9.0 he243708_1001
        - icu 58.2 hf484d3e_1000
        - jpeg 9c h14c3975_1001
        - kfoots 1.0 r351h14c3975_2
        - krb5 1.16.3 h05b26f9_1001
        - libcurl 7.64.0 h541490c_2
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 hf484d3e_1005
        - libgcc-ng 7.3.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_0
        - libiconv 1.15 h14c3975_1004
        - libidn2 2.1.1 h14c3975_0
        - libpng 1.6.36 h84994c4_1000
        - libssh2 1.8.0 h90d6eec_1004
        - libstdcxx-ng 7.3.0 hdf63c60_0
        - libtiff 4.0.10 h648cc4a_1001
        - libunistring 0.9.10 h14c3975_0
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.8 h143f9aa_1005
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1b h14c3975_1
        - pango 1.40.14 hf0c64fd_1003
        - pcre 8.41 hf484d3e_1003
        - pixman 0.34.0 h14c3975_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-base 3.5.1 he45234b_1005
        - r-bitops 1.0_6 r351h96ca727_1002
        - r-lattice 0.20_38 r351h96ca727_1000
        - r-locfit 1.5_9.1 r351h14c3975_1002
        - r-rcolorbrewer 1.1_2 r351h6115d3f_1001
        - r-rcpp 1.0.0 r351h29659fb_1000
        - r-rcurl 1.95_4.11 r351h96ca727_1003
        - readline 7.0 hf8c457e_1001
        - tk 8.6.9 h84994c4_1000
        - tktable 2.10 h14c3975_0
        - wget 1.20.1 h90d6eec_0
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.9 h14c3975_1004
        - xorg-libsm 1.2.3 h4937e3b_1000
        - xorg-libx11 1.6.7 h14c3975_1000
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.2 h14c3975_1007
        - xorg-libxext 1.3.3 h14c3975_1004
        - xorg-libxrender 0.9.10 h14c3975_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h14c3975_1004
    run:
        - bioconductor-bamsignals
        - bioconductor-edger
        - bioconductor-genomicranges
        - bioconductor-iranges
        - bioconductor-s4vectors
        - kfoots
        - libgcc-ng >=7.3.0
        - r-base >=3.5.1,<3.5.2.0a0
        - r-rcolorbrewer
        - r-rcpp >=0.10.6
test:
    commands:
        - $R -e "library('epicseg')"
about:
    home: http://github.com/lamortenera/epicseg
    license: GPL-3
    summary: EpiCSeg (Epigenome Count-based Segmentation) is a software for annotating
        the genome based on the state of the chromatin. It provides tools for extracting
        count data from BAM files, typlically corresponding to ChIP-seq experiments
        for histone marks (but other choices are possible) it learns a statistical
        model for the read counts based on a HMM, it annotates the genome, and it
        provides tools for displaying and analyzing the obtained models and segmentations.
        EpiCSeg can be used as an R package or from the command line via Rscript.
extra:
    copy_test_source_files: true
    final: true
