# This file created by conda-build 2.1.15
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jun 23 09:10:37 2017
# ------------------------------------------------

package:
    name: ensembl-vep
    version: '89.4'
source:
    fn: vep-89.4.tar.gz
    md5: ad9059806b061ac11bb3e7d9f51ca30d
    url: https://github.com/Ensembl/ensembl-vep/archive/release/89.4.tar.gz
build:
    noarch: ''
    noarch_python: false
    number: '0'
    string: htslib1.4_0
requirements:
    build:
        - perl 5.22.0.1 0
        - perl-lwp-simple 6.15 3
        - perl-encode-locale 1.05 pl5.22.0_4
        - curl 7.52.1 0
        - unzip 6.0 0
        - perl-threaded 5.22.0 pl5.22.0_12
        - perl-archive-zip 1.55 3
        - ca-certificates 2017.4.17 0
        - openssl 1.0.2k 0
        - zlib 1.2.11 0
        - libgcc 5.2.0 0
    run:
        - perl
        - htslib 1.4*
        - perl-bioperl
        - perl-bio-db-hts >=2.7
        - perl-cgi
        - perl-dbi
        - perl-dbd-mysql
        - perl-io-compress
        - perl-json
        - perl-perlio-gzip
        - perl-sereal
        - perl-set-intervaltree
        - unzip
test:
    commands:
        - vep --help
        - vep_convert_cache --help
        - vep_install --help
        - haplo --help
about:
    home: http://www.ensembl.org/info/docs/tools/vep/index.html
    license: Apache 2.0
    summary: The VEP determines the effect of your variants (SNPs, insertions, deletions,
        CNVs or structural variants) on genes, transcripts, and protein sequence,
        as well as regulatory regions.
extra:
    final: true
    notes: "This package installs only the variant effect predictor (VEP) library\n\
        code. To install data libraries, you can use the 'vep_install' command\ninstalled\
        \ along with it. For example, to install the VEP library for human\nGRCh38\
        \ to a directory\n\nvep_install -a cf -s homo_sapiens -y GRCh38 -c /output/path/to/GRCh38/vep\
        \ --CONVERT\n\n(note that vep_install is renamed from INSTALL.pl\n to avoid\
        \ having generic script names in the PATH)\n\nThe --CONVERT flag is not required\
        \ but improves lookup speeds during\nruns. See the VEP documentation for more\
        \ details\n\nhttp://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html\n"
