| Application Groups

Group | Description
--- | ---
Acd | Acd file utilities
Alignment | Sequence comparison and alignment
Alignment consensus | Merging sequences to make a consensus
Alignment differences | Finding differences between sequences
Alignment dot plots | Dot plot sequence comparisons
Alignment global | Global sequence alignment
Alignment local | Local sequence alignment
Alignment multiple | Multiple sequence alignment
Assembly fragment assembly | DNA sequence assembly
Data resources | Data resources
Data retrieval | Data retrieval
Data retrieval chemistry data | Chemistry data retrieval
Data retrieval feature data | Sequence feature data retrieval
Data retrieval ontology data | Ontology data retrieval
Data retrieval resource data | Resource data retrieval
Data retrieval sequence data | Sequence data retrieval
Data retrieval sequence data assembly data | Sequence assembly data retrieval
Data retrieval text data | Text data retrieval
Data retrieval tool data | Tool data retrieval
Data retrieval url data | Url data retrieval
Data retrieval xml data | Xml data retrieval
Display | Publication-quality display
Documentation | Documentation
Edit | Data file and content editing
Enzyme kinetics | Enzyme kinetics calculations
Feature tables | Manipulation and display of sequence annotation
HMM | Hidden markov model analysis
Menus | Menu interface(s)
Nucleic 2d structure | Nucleic acid secondary structure
Nucleic codon usage | Codon usage analysis
Nucleic composition | Composition of nucleotide sequences
Nucleic CpG islands | CpG island detection and analysis
Nucleic functional sites | Nucleic acid functional sites
Nucleic gene finding | Predictions of genes and other genomic features
Nucleic motifs | Nucleic acid motif searches
Nucleic mutation | Nucleic acid sequence mutation
Nucleic primers | Primer prediction
Nucleic profiles | Nucleic acid profile generation and searching
Nucleic properties | Nucleic acid physicochemical properties
Nucleic repeats | Nucleic acid repeat detection
Nucleic restriction | Restriction enzyme sites in nucleotide sequences
Nucleic RNA folding | RNA folding methods and analysis
Nucleic transcription | Transcription factors, promoters and terminator prediction
Nucleic translation | Translation of nucleotide sequence to protein sequence
Ontology | Ontologies
Ontology edam | Edam ontology
Ontology go | Go gene ontology
Ontology taxonomy | Ncbi taxonomy
Phylogeny consensus | Phylogenetic consensus methods
Phylogeny continuous characters | Phylogenetic continuous character methods
Phylogeny discrete characters | Phylogenetic discrete character methods
Phylogeny distance matrix | Phylogenetic distance matrix methods
Phylogeny gene frequencies | Phylogenetic gene frequency methods
Phylogeny molecular sequence | Phylogenetic molecular sequence methods
Phylogeny tree drawing | Phylogenetic tree drawing methods
Protein 2d structure | Protein secondary structure
Protein 3d structure | Protein tertiary structure
Protein composition | Composition of protein sequences
Protein domains | Protein domain analysis
Protein functional sites | Protein functional sites
Protein modifications | Protein post-translational modifications
Protein motifs | Protein motif searches
Protein mutation | Protein sequence mutation
Protein profiles | Protein profile generation and searching
Protein properties | Protein physicochemical properties
Test | Testing tools, not for general use.
Utils | Utility tools
Utils database creation | Database installation
Utils database indexing | Database indexing