application: edamdef [
  documentation: "Find EDAM ontology terms by definition"
  groups: "Ontology:EDAM, Data retrieval:Ontology data"
    relations: "EDAM_topic:0089 Ontology"
    relations: "EDAM_topic:0090 Data search and retrieval"
    relations: "EDAM_operation:2422 Data retrieval"
]

section: input [
  information: "Input section"
  type: "page"
]

  string: query [
      default: ""
      parameter: "Y"
      information: "Definition word(s) to search for in ontology"
      knowntype: "keyword"
    relations: "EDAM_data:0968 Keyword"
  ]

endsection: input





section: additional [
  information: "Additional section"
  type: "page"
]

list: namespace [
      additional: "Y"
      default: "*"
      minimum: "1"
      maximum: "7"
      header: "EDAM namespace(s)"
      values: "data: Data entity;
     	       entity: Biological entity;
               format: Data format;
               identifier: Identifier;
 	       operation: Bioinformatics operation;
               resource: Data resource;
      	       topic: Field of bioinformatics study"
      delimiter: ";"
      codedelimiter: ":"
      information: "Return terms in namespace(s)"
      help: "By default all terms are returned. Searches can be limited
      	    to one or a few namespaces."
    relations: "EDAM_data:0967 Ontology concept metadata"
    ]

endsection: additional





section: advanced [
  information: "Advanced section"
  type: "page"
]

  boolean: subclasses [
    default: "N"
    information: "Include subclasses of hits"
    help: "Extend the query matches to include all terms which are
           specialisations (EDAM sub-classes) of the matched type."
    relations: "EDAM_data:2527 Parameter"
  ]


  boolean: obsolete [
    default: "N"
    information: "Include obsolete terms"
    help: "The default behaviour is to not use or return obsolete terms.
           This option if set will include all terms."
    relations: "EDAM_data:2527 Parameter"
  ]


endsection: advanced





section: output [
  information: "Output section"
  type: "page"
]

  outobo: outfile [
    parameter: "Y"
    name: "edamdef"
    relations: "EDAM_data:2223 Ontology metadata"
  ]

endsection: output


