| Application Groups

Group | Description
--- | ---
Acd | Acd file utilities
Alignment consensus | Merging sequences to make a consensus
Alignment differences | Finding differences between sequences
Alignment dot plots | Dot plot sequence comparisons
Alignment global | Global sequence alignment
Alignment local | Local sequence alignment
Alignment multiple | Multiple sequence alignment
Display | Publication-quality display
Edit | Sequence editing
Enzyme kinetics | Enzyme kinetics calculations
Feature tables | Manipulation and display of sequence annotation
HMM | Hidden markov model analysis
Information | Information and general help for users
Menus | Menu interface(s)
Nucleic 2d structure | Nucleic acid secondary structure
Nucleic codon usage | Codon usage analysis
Nucleic composition | Composition of nucleotide sequences
Nucleic CpG islands | CpG island detection and analysis
Nucleic gene finding | Predictions of genes and other genomic features
Nucleic motifs | Nucleic acid motif searches
Nucleic mutation | Nucleic acid sequence mutation
Nucleic primers | Primer prediction
Nucleic profiles | Nucleic acid profile generation and searching
Nucleic repeats | Nucleic acid repeat detection
Nucleic restriction | Restriction enzyme sites in nucleotide sequences
Nucleic RNA folding | RNA folding methods and analysis
Nucleic transcription | Transcription factors, promoters and terminator prediction
Nucleic translation | Translation of nucleotide sequence to protein sequence
Phylogeny consensus | Phylogenetic consensus methods
Phylogeny continuous characters | Phylogenetic continuous character methods
Phylogeny discrete characters | Phylogenetic discrete character methods
Phylogeny distance matrix | Phylogenetic distance matrix methods
Phylogeny gene frequencies | Phylogenetic gene frequency methods
Phylogeny molecular sequence | Phylogenetic tree drawing methods
Phylogeny tree drawing | Phylogenetic molecular sequence methods
Protein 2d structure | Protein secondary structure
Protein 3d structure | Protein tertiary structure
Protein composition | Composition of protein sequences
Protein motifs | Protein motif searches
Protein mutation | Protein sequence mutation
Protein profiles | Protein profile generation and searching
Test | Testing tools, not for general use.
Utils database creation | Database installation
Utils database indexing | Database indexing
Utils misc | Utility tools