# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Jan 21 11:55:04 2025
# ------------------------------------------------

package:
  name: eastr
  version: 1.1.1
source:
  sha256: 83941dbd193266d3a5c7bbcb0190705f7bcaec482eddd9bdd53356536db3b0ea
  url: https://pypi.io/packages/source/e/eastr/eastr-1.1.1.tar.gz
build:
  entry_points:
    - eastr = EASTR.run_eastr:main
  number: '1'
  run_exports:
    - eastr >=1.1.1,<2.0a0
  script:
    - /opt/conda/conda-bld/eastr_1737460759222/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/bin/python
      -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir
  string: py311h2de2dd3_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - autoconf 2.71 pl5321h2b4cb7a_1
    - automake 1.17 pl5321ha770c72_0
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - binutils_linux-64 2.43 h4852527_2
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.4 hb9d3cd8_0
    - ca-certificates 2024.12.14 hbcca054_0
    - cmake 3.31.4 h74e3db0_0
    - gcc_impl_linux-64 13.3.0 hfea6d02_1
    - gcc_linux-64 13.3.0 hc28eda2_7
    - gxx_impl_linux-64 13.3.0 hdbfa832_1
    - gxx_linux-64 13.3.0 h6834431_7
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libcurl 8.11.1 h332b0f4_0
    - libedit 3.1.20240808 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libexpat 2.6.4 h5888daf_0
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 13.3.0 h84ea5a7_101
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - liblzma 5.6.3 hb9d3cd8_1
    - libnghttp2 1.64.0 h161d5f1_0
    - libsanitizer 13.3.0 heb74ff8_1
    - libssh2 1.11.1 hf672d98_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-devel_linux-64 13.3.0 h84ea5a7_101
    - libstdcxx-ng 14.2.0 h4852527_1
    - libtool 2.4.7 he02047a_1
    - libuv 1.50.0 hb9d3cd8_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.3.1 hb9d3cd8_2
    - m4 1.4.18 h516909a_1001
    - make 4.4.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_2
    - openssl 3.4.0 h7b32b05_1
    - perl 5.32.1 7_hd590300_perl5
    - rhash 1.4.5 hb9d3cd8_0
    - sysroot_linux-64 2.17 h0157908_18
    - tzdata 2025a h78e105d_0
    - zstd 1.5.6 ha6fb4c9_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h4bc722e_7
    - ca-certificates 2024.12.14 hbcca054_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libexpat 2.6.4 h5888daf_0
    - libffi 3.4.2 h7f98852_5
    - libgcc 14.2.0 h77fa898_1
    - libgcc-ng 14.2.0 h69a702a_1
    - libgomp 14.2.0 h77fa898_1
    - liblzma 5.6.3 hb9d3cd8_1
    - libnsl 2.0.1 hd590300_0
    - libsqlite 3.48.0 hee588c1_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libuuid 2.38.1 h0b41bf4_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.3.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_2
    - openssl 3.4.0 h7b32b05_1
    - pip 24.3.1 pyh8b19718_2
    - python 3.11.11 h9e4cc4f_1_cpython
    - readline 8.2 h8228510_1
    - setuptools 75.8.0 pyhff2d567_0
    - tk 8.6.13 noxft_h4845f30_101
    - tzdata 2025a h78e105d_0
    - wheel 0.45.1 pyhd8ed1ab_1
    - zlib 1.3.1 hb9d3cd8_2
  run:
    - biopython >=1.81,<2.0
    - bowtie2
    - libgcc >=13
    - libstdcxx >=13
    - libzlib >=1.3.1,<2.0a0
    - mappy >=2.26,<3.0
    - numpy >=1.26.1
    - pandas >=2.1.2,<2.3
    - pysam >=0.22.0,<0.23
    - python >=3.11,<3.12.0a0
    - python_abi 3.11.* *_cp311
    - samtools
test:
  commands:
    - eastr --help
  imports:
    - EASTR
about:
  dev_url: https://github.com/ishinder/EASTR
  home: https://github.com/ishinder/EASTR
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: Tool for emending alignments of spuriously spliced transcript reads.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:eastr
    - doi:10.1038/s41467-023-43017-4
    - usegalaxy-eu:eastr
  recipe-maintainers:
    - coperni
    - ishinder
