LICENSE.md
MANIFEST.in
README.rst
pyproject.toml
setup.py
ci/linux-deps
ci/manylinux-deps
ci/osx-deps
dysgu/IITreeBFS.h
dysgu/__init__.py
dysgu/call_component.cpp
dysgu/call_component.pyx
dysgu/cluster.cpp
dysgu/cluster.pyx
dysgu/consensus.cpp
dysgu/consensus.pyx
dysgu/coverage.cpp
dysgu/coverage.pxd
dysgu/coverage.pyx
dysgu/dysgu_model.1.pkl.gz
dysgu/extra_metrics.cpp
dysgu/extra_metrics.pxd
dysgu/extra_metrics.pyx
dysgu/filter_normals.py
dysgu/find_reads.hpp
dysgu/graph.cpp
dysgu/graph.pyx
dysgu/graph_objects.hpp
dysgu/io_funcs.cpp
dysgu/io_funcs.pyx
dysgu/logo.png
dysgu/main.py
dysgu/map_set_utils.cpp
dysgu/map_set_utils.pxd
dysgu/map_set_utils.pyx
dysgu/merge_svs.cpp
dysgu/merge_svs.pyx
dysgu/post_call.py
dysgu/python_api.py
dysgu/re_map.py
dysgu/robin_hood.h
dysgu/sites_utils.py
dysgu/sv2bam.cpp
dysgu/sv2bam.pyx
dysgu/sv_category.cpp
dysgu/sv_category.pxd
dysgu/sv_category.pyx
dysgu/view.py
dysgu/xxhash64.h
dysgu.egg-info/PKG-INFO
dysgu.egg-info/SOURCES.txt
dysgu.egg-info/dependency_links.txt
dysgu.egg-info/entry_points.txt
dysgu.egg-info/requires.txt
dysgu.egg-info/top_level.txt
dysgu/edlib/__init__.py
dysgu/edlib/edlib.cpp
dysgu/edlib/src/edlib.cpp
dysgu/edlib/src/edlib.h
dysgu/scikitbio/__init__.py
dysgu/scikitbio/_ssw_wrapper.c
dysgu/scikitbio/ssw.c
dysgu/scikitbio/ssw.h
dysgu/sortedintersect/__init__.py
dysgu/sortedintersect/sintersect.cpp
dysgu/tests/__init__.py
dysgu/tests/ref.fa
dysgu/tests/ref.fa.fai
dysgu/tests/small.bam
dysgu/tests/small.bam.bai
dysgu/tests/small.cram
dysgu/tests/small.cram.crai
dysgu/tests/small.dysgu.sam
dysgu/tests/targets.bed
dysgu/tests/test_api.py
scripts/__init__.py
scripts/convert2bnd.py
scripts/coverage2bed.py
scripts/suggest_max_coverage.py