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                                                    PyObject *code, PyObject *c, PyObject* n, PyObject *v,
                                                    PyObject *fv, PyObject *cell, PyObject* fn,
                                                    PyObject *name, int fline, PyObject *lnos) {
        PyObject *kwds=NULL, *argcount=NULL, *posonlyargcount=NULL, *kwonlyargcount=NULL;
        PyObject *nlocals=NULL, *stacksize=NULL, *flags=NULL, *replace=NULL, *call_result=NULL, *empty=NULL;
        const char *fn_cstr=NULL;
        const char *name_cstr=NULL;
        PyCodeObject* co=NULL;
        PyObject *type, *value, *traceback;
        PyErr_Fetch(&type, &value, &traceback);
        if (!(kwds=PyDict_New())) goto end;
        if (!(argcount=PyLong_FromLong(a))) goto end;
        if (PyDict_SetItemString(kwds, "co_argcount", argcount) != 0) goto end;
        if (!(posonlyargcount=PyLong_FromLong(0))) goto end;
        if (PyDict_SetItemString(kwds, "co_posonlyargcount", posonlyargcount) != 0) goto end;
        if (!(kwonlyargcount=PyLong_FromLong(k))) goto end;
        if (PyDict_SetItemString(kwds, "co_kwonlyargcount", kwonlyargcount) != 0) goto end;
        if (!(nlocals=PyLong_FromLong(l))) goto end;
        if (PyDict_SetItemString(kwds, "co_nlocals", nlocals) != 0) goto end;
        if (!(stacksize=PyLong_FromLong(s))) goto end;
        if (PyDict_SetItemString(kwds, "co_stacksize", stacksize) != 0) goto end;
        if (!(flags=PyLong_FromLong(f))) goto end;
        if (PyDict_SetItemString(kwds, "co_flags", flags) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_code", code) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_consts", c) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_names", n) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_varnames", v) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_freevars", fv) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_cellvars", cell) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_linetable", lnos) != 0) goto end;
        if (!(fn_cstr=PyUnicode_AsUTF8AndSize(fn, NULL))) goto end;
        if (!(name_cstr=PyUnicode_AsUTF8AndSize(name, NULL))) goto end;
        if (!(co = PyCode_NewEmpty(fn_cstr, name_cstr, fline))) goto end;
        if (!(replace = PyObject_GetAttrString((PyObject*)co, "replace"))) goto cleanup_code_too;
        if (!(empty = PyTuple_New(0))) goto cleanup_code_too; // unfortunately __pyx_empty_tuple isn't available here
        if (!(call_result = PyObject_Call(replace, empty, kwds))) goto cleanup_code_too;
        Py_XDECREF((PyObject*)co);
        co = (PyCodeObject*)call_result;
        call_result = NULL;
        if (0) {
            cleanup_code_too:
            Py_XDECREF((PyObject*)co);
            co = NULL;
        }
        end:
        Py_XDECREF(kwds);
        Py_XDECREF(argcount);
        Py_XDECREF(posonlyargcount);
        Py_XDECREF(kwonlyargcount);
        Py_XDECREF(nlocals);
        Py_XDECREF(stacksize);
        Py_XDECREF(replace);
        Py_XDECREF(call_result);
        Py_XDECREF(empty);
        if (type) {
            PyErr_Restore(type, value, traceback);
        }
        return co;
    }
#else
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
#endif
  #define __Pyx_DefaultClassType PyType_Type
#endif
#ifndef Py_TPFLAGS_CHECKTYPES
  #define Py_TPFLAGS_CHECKTYPES 0
#endif
#ifndef Py_TPFLAGS_HAVE_INDEX
  #define Py_TPFLAGS_HAVE_INDEX 0
#endif
#ifndef Py_TPFLAGS_HAVE_NEWBUFFER
  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
#endif
#ifndef Py_TPFLAGS_HAVE_FINALIZE
  #define Py_TPFLAGS_HAVE_FINALIZE 0
#endif
#ifndef METH_STACKLESS
  #define METH_STACKLESS 0
#endif
#if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
  #ifndef METH_FASTCALL
     #define METH_FASTCALL 0x80
  #endif
  typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
  typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
                                                          Py_ssize_t nargs, PyObject *kwnames);
#else
  #define __Pyx_PyCFunctionFast _PyCFunctionFast
  #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
#endif
#if CYTHON_FAST_PYCCALL
#define __Pyx_PyFastCFunction_Check(func)\
    ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)))))
#else
#define __Pyx_PyFastCFunction_Check(func) 0
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
  #define PyObject_Malloc(s)   PyMem_Malloc(s)
  #define PyObject_Free(p)     PyMem_Free(p)
  #define PyObject_Realloc(p)  PyMem_Realloc(p)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1
  #define PyMem_RawMalloc(n)           PyMem_Malloc(n)
  #define PyMem_RawRealloc(p, n)       PyMem_Realloc(p, n)
  #define PyMem_RawFree(p)             PyMem_Free(p)
#endif
#if CYTHON_COMPILING_IN_PYSTON
  #define __Pyx_PyCode_HasFreeVars(co)  PyCode_HasFreeVars(co)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
#else
  #define __Pyx_PyCode_HasFreeVars(co)  (PyCode_GetNumFree(co) > 0)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno)  (frame)->f_lineno = (lineno)
#endif
#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#elif PY_VERSION_HEX >= 0x03060000
  #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
#elif PY_VERSION_HEX >= 0x03000000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#else
  #define __Pyx_PyThreadState_Current _PyThreadState_Current
#endif
#if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
#include "pythread.h"
#define Py_tss_NEEDS_INIT 0
typedef int Py_tss_t;
static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
  *key = PyThread_create_key();
  return 0;
}
static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
  Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
  *key = Py_tss_NEEDS_INIT;
  return key;
}
static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
  PyObject_Free(key);
}
static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
  return *key != Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
  PyThread_delete_key(*key);
  *key = Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
  return PyThread_set_key_value(*key, value);
}
static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
  return PyThread_get_key_value(*key);
}
#endif
#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
#define __Pyx_PyDict_NewPresized(n)  ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
#else
#define __Pyx_PyDict_NewPresized(n)  PyDict_New()
#endif
#if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_TrueDivide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceTrueDivide(x,y)
#else
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_Divide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceDivide(x,y)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
#define __Pyx_PyDict_GetItemStr(dict, name)  _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
#else
#define __Pyx_PyDict_GetItemStr(dict, name)  PyDict_GetItem(dict, name)
#endif
#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
  #define CYTHON_PEP393_ENABLED 1
  #if PY_VERSION_HEX >= 0x030C0000
    #define __Pyx_PyUnicode_READY(op)       (0)
  #else
    #define __Pyx_PyUnicode_READY(op)       (likely(PyUnicode_IS_READY(op)) ?\
                                                0 : _PyUnicode_Ready((PyObject *)(op)))
  #endif
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_LENGTH(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   PyUnicode_MAX_CHAR_VALUE(u)
  #define __Pyx_PyUnicode_KIND(u)         PyUnicode_KIND(u)
  #define __Pyx_PyUnicode_DATA(u)         PyUnicode_DATA(u)
  #define __Pyx_PyUnicode_READ(k, d, i)   PyUnicode_READ(k, d, i)
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  PyUnicode_WRITE(k, d, i, ch)
  #if PY_VERSION_HEX >= 0x030C0000
    #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != PyUnicode_GET_LENGTH(u))
  #else
    #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000
    #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length))
    #else
    #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
    #endif
  #endif
#else
  #define CYTHON_PEP393_ENABLED 0
  #define PyUnicode_1BYTE_KIND  1
  #define PyUnicode_2BYTE_KIND  2
  #define PyUnicode_4BYTE_KIND  4
  #define __Pyx_PyUnicode_READY(op)       (0)
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_SIZE(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
  #define __Pyx_PyUnicode_KIND(u)         (sizeof(Py_UNICODE))
  #define __Pyx_PyUnicode_DATA(u)         ((void*)PyUnicode_AS_UNICODE(u))
  #define __Pyx_PyUnicode_READ(k, d, i)   ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != PyUnicode_GET_SIZE(u))
#endif
#if CYTHON_COMPILING_IN_PYPY
  #define __Pyx_PyUnicode_Concat(a, b)      PyNumber_Add(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  PyNumber_Add(a, b)
#else
  #define __Pyx_PyUnicode_Concat(a, b)      PyUnicode_Concat(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
      PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
  #define PyUnicode_Contains(u, s)  PySequence_Contains(u, s)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
  #define PyByteArray_Check(obj)  PyObject_TypeCheck(obj, &PyByteArray_Type)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
  #define PyObject_Format(obj, fmt)  PyObject_CallMethod(obj, "__format__", "O", fmt)
#endif
#define __Pyx_PyString_FormatSafe(a, b)   ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
#define __Pyx_PyUnicode_FormatSafe(a, b)  ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyString_Format(a, b)  PyUnicode_Format(a, b)
#else
  #define __Pyx_PyString_Format(a, b)  PyString_Format(a, b)
#endif
#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
  #define PyObject_ASCII(o)            PyObject_Repr(o)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBaseString_Type            PyUnicode_Type
  #define PyStringObject               PyUnicodeObject
  #define PyString_Type                PyUnicode_Type
  #define PyString_Check               PyUnicode_Check
  #define PyString_CheckExact          PyUnicode_CheckExact
#ifndef PyObject_Unicode
  #define PyObject_Unicode             PyObject_Str
#endif
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
#else
  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
#endif
#ifndef PySet_CheckExact
  #define PySet_CheckExact(obj)        (Py_TYPE(obj) == &PySet_Type)
#endif
#if PY_VERSION_HEX >= 0x030900A4
  #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt)
  #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size)
#else
  #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt)
  #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size)
#endif
#if CYTHON_ASSUME_SAFE_MACROS
  #define __Pyx_PySequence_SIZE(seq)  Py_SIZE(seq)
#else
  #define __Pyx_PySequence_SIZE(seq)  PySequence_Size(seq)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyIntObject                  PyLongObject
  #define PyInt_Type                   PyLong_Type
  #define PyInt_Check(op)              PyLong_Check(op)
  #define PyInt_CheckExact(op)         PyLong_CheckExact(op)
  #define PyInt_FromString             PyLong_FromString
  #define PyInt_FromUnicode            PyLong_FromUnicode
  #define PyInt_FromLong               PyLong_FromLong
  #define PyInt_FromSize_t             PyLong_FromSize_t
  #define PyInt_FromSsize_t            PyLong_FromSsize_t
  #define PyInt_AsLong                 PyLong_AsLong
  #define PyInt_AS_LONG                PyLong_AS_LONG
  #define PyInt_AsSsize_t              PyLong_AsSsize_t
  #define PyInt_AsUnsignedLongMask     PyLong_AsUnsignedLongMask
  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
  #define PyNumber_Int                 PyNumber_Long
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBoolObject                 PyLongObject
#endif
#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
  #ifndef PyUnicode_InternFromString
    #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
  #endif
#endif
#if PY_VERSION_HEX < 0x030200A4
  typedef long Py_hash_t;
  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
  #define __Pyx_PyInt_AsHash_t   __Pyx_PyIndex_AsHash_t
#else
  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
  #define __Pyx_PyInt_AsHash_t   __Pyx_PyIndex_AsSsize_t
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? ((void)(klass), PyMethod_New(func, self)) : __Pyx_NewRef(func))
#else
  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
#endif
#if CYTHON_USE_ASYNC_SLOTS
  #if PY_VERSION_HEX >= 0x030500B1
    #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
    #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
  #else
    #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
  #endif
#else
  #define __Pyx_PyType_AsAsync(obj) NULL
#endif
#ifndef __Pyx_PyAsyncMethodsStruct
    typedef struct {
        unaryfunc am_await;
        unaryfunc am_aiter;
        unaryfunc am_anext;
    } __Pyx_PyAsyncMethodsStruct;
#endif

#if defined(_WIN32) || defined(WIN32) || defined(MS_WINDOWS)
  #if !defined(_USE_MATH_DEFINES)
    #define _USE_MATH_DEFINES
  #endif
#endif
#include <math.h>
#ifdef NAN
#define __PYX_NAN() ((float) NAN)
#else
static CYTHON_INLINE float __PYX_NAN() {
  float value;
  memset(&value, 0xFF, sizeof(value));
  return value;
}
#endif
#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
#define __Pyx_truncl trunc
#else
#define __Pyx_truncl truncl
#endif

#define __PYX_MARK_ERR_POS(f_index, lineno) \
    { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; }
#define __PYX_ERR(f_index, lineno, Ln_error) \
    { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; }

#ifndef __PYX_EXTERN_C
  #ifdef __cplusplus
    #define __PYX_EXTERN_C extern "C"
  #else
    #define __PYX_EXTERN_C extern
  #endif
#endif

#define __PYX_HAVE__dysgu__sv_category
#define __PYX_HAVE_API__dysgu__sv_category
/* Early includes */
#include "ios"
#include "new"
#include "stdexcept"
#include "typeinfo"
#include <vector>
#include <utility>

    #if __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)
    // move should be defined for these versions of MSVC, but __cplusplus isn't set usefully
    #include <type_traits>

    namespace cython_std {
    template <typename T> typename std::remove_reference<T>::type&& move(T& t) noexcept { return std::move(t); }
    template <typename T> typename std::remove_reference<T>::type&& move(T&& t) noexcept { return std::move(t); }
    }

    #endif
    
#include <string.h>
#include <stdio.h>
#include "numpy/arrayobject.h"
#include "numpy/ndarrayobject.h"
#include "numpy/ndarraytypes.h"
#include "numpy/arrayscalars.h"
#include "numpy/ufuncobject.h"

    /* NumPy API declarations from "numpy/__init__.pxd" */
    
#include <stdint.h>
#include "xxhash64.h"
#include "robin_hood.h"
#include "find_reads.h"
#include "wrap_map_set2.h"
#include <map>
#ifdef _OPENMP
#include <omp.h>
#endif /* _OPENMP */

#if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
#define CYTHON_WITHOUT_ASSERTIONS
#endif

typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
                const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;

#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8)
#define __PYX_DEFAULT_STRING_ENCODING ""
#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#define __Pyx_uchar_cast(c) ((unsigned char)c)
#define __Pyx_long_cast(x) ((long)x)
#define __Pyx_fits_Py_ssize_t(v, type, is_signed)  (\
    (sizeof(type) < sizeof(Py_ssize_t))  ||\
    (sizeof(type) > sizeof(Py_ssize_t) &&\
          likely(v < (type)PY_SSIZE_T_MAX ||\
                 v == (type)PY_SSIZE_T_MAX)  &&\
          (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
                                v == (type)PY_SSIZE_T_MIN)))  ||\
    (sizeof(type) == sizeof(Py_ssize_t) &&\
          (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
                               v == (type)PY_SSIZE_T_MAX)))  )
static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
    return (size_t) i < (size_t) limit;
}
#if defined (__cplusplus) && __cplusplus >= 201103L
    #include <cstdlib>
    #define __Pyx_sst_abs(value) std::abs(value)
#elif SIZEOF_INT >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) abs(value)
#elif SIZEOF_LONG >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) labs(value)
#elif defined (_MSC_VER)
    #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define __Pyx_sst_abs(value) llabs(value)
#elif defined (__GNUC__)
    #define __Pyx_sst_abs(value) __builtin_llabs(value)
#else
    #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
#define __Pyx_PyBytes_FromString        PyBytes_FromString
#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
#if PY_MAJOR_VERSION < 3
    #define __Pyx_PyStr_FromString        __Pyx_PyBytes_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#else
    #define __Pyx_PyStr_FromString        __Pyx_PyUnicode_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#endif
#define __Pyx_PyBytes_AsWritableString(s)     ((char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableSString(s)    ((signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableUString(s)    ((unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsString(s)     ((const char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsSString(s)    ((const signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsUString(s)    ((const unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyObject_AsWritableString(s)    ((char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableSString(s)    ((signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableUString(s)    ((unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsSString(s)    ((const signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsUString(s)    ((const unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_FromCString(s)  __Pyx_PyObject_FromString((const char*)s)
#define __Pyx_PyBytes_FromCString(s)   __Pyx_PyBytes_FromString((const char*)s)
#define __Pyx_PyByteArray_FromCString(s)   __Pyx_PyByteArray_FromString((const char*)s)
#define __Pyx_PyStr_FromCString(s)     __Pyx_PyStr_FromString((const char*)s)
#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
    const Py_UNICODE *u_end = u;
    while (*u_end++) ;
    return (size_t)(u_end - u - 1);
}
#define __Pyx_PyUnicode_FromUnicode(u)       PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
#define __Pyx_PyUnicode_AsUnicode            PyUnicode_AsUnicode
#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
#define __Pyx_PySequence_Tuple(obj)\
    (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*);
#if CYTHON_ASSUME_SAFE_MACROS
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#else
#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
#endif
#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
#else
#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
#endif
#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    PyObject* ascii_chars_u = NULL;
    PyObject* ascii_chars_b = NULL;
    const char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    if (strcmp(default_encoding_c, "ascii") == 0) {
        __Pyx_sys_getdefaultencoding_not_ascii = 0;
    } else {
        char ascii_chars[128];
        int c;
        for (c = 0; c < 128; c++) {
            ascii_chars[c] = c;
        }
        __Pyx_sys_getdefaultencoding_not_ascii = 1;
        ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
        if (!ascii_chars_u) goto bad;
        ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
        if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
            PyErr_Format(
                PyExc_ValueError,
                "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
                default_encoding_c);
            goto bad;
        }
        Py_DECREF(ascii_chars_u);
        Py_DECREF(ascii_chars_b);
    }
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    Py_XDECREF(ascii_chars_u);
    Py_XDECREF(ascii_chars_b);
    return -1;
}
#endif
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
#else
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
static char* __PYX_DEFAULT_STRING_ENCODING;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
    if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
    strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    return -1;
}
#endif
#endif


/* Test for GCC > 2.95 */
#if defined(__GNUC__)     && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
  #define likely(x)   __builtin_expect(!!(x), 1)
  #define unlikely(x) __builtin_expect(!!(x), 0)
#else /* !__GNUC__ or GCC < 2.95 */
  #define likely(x)   (x)
  #define unlikely(x) (x)
#endif /* __GNUC__ */
static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }

static PyObject *__pyx_m = NULL;
static PyObject *__pyx_d;
static PyObject *__pyx_b;
static PyObject *__pyx_cython_runtime = NULL;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
static PyObject *__pyx_empty_unicode;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;

/* Header.proto */
#if !defined(CYTHON_CCOMPLEX)
  #if defined(__cplusplus)
    #define CYTHON_CCOMPLEX 1
  #elif defined(_Complex_I)
    #define CYTHON_CCOMPLEX 1
  #else
    #define CYTHON_CCOMPLEX 0
  #endif
#endif
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    #include <complex>
  #else
    #include <complex.h>
  #endif
#endif
#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
  #undef _Complex_I
  #define _Complex_I 1.0fj
#endif


static const char *__pyx_f[] = {
  "stringsource",
  "dysgu/sv_category.pyx",
  "dysgu/sv_category.pxd",
  "__init__.pxd",
  "type.pxd",
  "dysgu/map_set_utils.pxd",
};

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":688
 * # in Cython to enable them only on the right systems.
 * 
 * ctypedef npy_int8       int8_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t
 */
typedef npy_int8 __pyx_t_5numpy_int8_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":689
 * 
 * ctypedef npy_int8       int8_t
 * ctypedef npy_int16      int16_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int32      int32_t
 * ctypedef npy_int64      int64_t
 */
typedef npy_int16 __pyx_t_5numpy_int16_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":690
 * ctypedef npy_int8       int8_t
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int64      int64_t
 * #ctypedef npy_int96      int96_t
 */
typedef npy_int32 __pyx_t_5numpy_int32_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":691
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t
 * ctypedef npy_int64      int64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_int96      int96_t
 * #ctypedef npy_int128     int128_t
 */
typedef npy_int64 __pyx_t_5numpy_int64_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":695
 * #ctypedef npy_int128     int128_t
 * 
 * ctypedef npy_uint8      uint8_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t
 */
typedef npy_uint8 __pyx_t_5numpy_uint8_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":696
 * 
 * ctypedef npy_uint8      uint8_t
 * ctypedef npy_uint16     uint16_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint32     uint32_t
 * ctypedef npy_uint64     uint64_t
 */
typedef npy_uint16 __pyx_t_5numpy_uint16_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":697
 * ctypedef npy_uint8      uint8_t
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint64     uint64_t
 * #ctypedef npy_uint96     uint96_t
 */
typedef npy_uint32 __pyx_t_5numpy_uint32_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":698
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t
 * ctypedef npy_uint64     uint64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_uint96     uint96_t
 * #ctypedef npy_uint128    uint128_t
 */
typedef npy_uint64 __pyx_t_5numpy_uint64_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":702
 * #ctypedef npy_uint128    uint128_t
 * 
 * ctypedef npy_float32    float32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_float64    float64_t
 * #ctypedef npy_float80    float80_t
 */
typedef npy_float32 __pyx_t_5numpy_float32_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":703
 * 
 * ctypedef npy_float32    float32_t
 * ctypedef npy_float64    float64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_float80    float80_t
 * #ctypedef npy_float128   float128_t
 */
typedef npy_float64 __pyx_t_5numpy_float64_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":712
 * # The int types are mapped a bit surprising --
 * # numpy.int corresponds to 'l' and numpy.long to 'q'
 * ctypedef npy_long       int_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longlong   longlong_t
 * 
 */
typedef npy_long __pyx_t_5numpy_int_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":713
 * # numpy.int corresponds to 'l' and numpy.long to 'q'
 * ctypedef npy_long       int_t
 * ctypedef npy_longlong   longlong_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_ulong      uint_t
 */
typedef npy_longlong __pyx_t_5numpy_longlong_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":715
 * ctypedef npy_longlong   longlong_t
 * 
 * ctypedef npy_ulong      uint_t             # <<<<<<<<<<<<<<
 * ctypedef npy_ulonglong  ulonglong_t
 * 
 */
typedef npy_ulong __pyx_t_5numpy_uint_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":716
 * 
 * ctypedef npy_ulong      uint_t
 * ctypedef npy_ulonglong  ulonglong_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_intp       intp_t
 */
typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":718
 * ctypedef npy_ulonglong  ulonglong_t
 * 
 * ctypedef npy_intp       intp_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uintp      uintp_t
 * 
 */
typedef npy_intp __pyx_t_5numpy_intp_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":719
 * 
 * ctypedef npy_intp       intp_t
 * ctypedef npy_uintp      uintp_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_double     float_t
 */
typedef npy_uintp __pyx_t_5numpy_uintp_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":721
 * ctypedef npy_uintp      uintp_t
 * 
 * ctypedef npy_double     float_t             # <<<<<<<<<<<<<<
 * ctypedef npy_double     double_t
 * ctypedef npy_longdouble longdouble_t
 */
typedef npy_double __pyx_t_5numpy_float_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":722
 * 
 * ctypedef npy_double     float_t
 * ctypedef npy_double     double_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longdouble longdouble_t
 * 
 */
typedef npy_double __pyx_t_5numpy_double_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":723
 * ctypedef npy_double     float_t
 * ctypedef npy_double     double_t
 * ctypedef npy_longdouble longdouble_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_cfloat      cfloat_t
 */
typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
/* Declarations.proto */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    typedef ::std::complex< float > __pyx_t_float_complex;
  #else
    typedef float _Complex __pyx_t_float_complex;
  #endif
#else
    typedef struct { float real, imag; } __pyx_t_float_complex;
#endif
static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);

/* Declarations.proto */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    typedef ::std::complex< double > __pyx_t_double_complex;
  #else
    typedef double _Complex __pyx_t_double_complex;
  #endif
#else
    typedef struct { double real, imag; } __pyx_t_double_complex;
#endif
static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);


/*--- Type declarations ---*/
struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree;
struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph;
struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph;
struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap;
struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet;
struct __pyx_obj_5dysgu_13map_set_utils_EventResult;
struct __pyx_obj_5dysgu_11sv_category_AlignmentItem;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":725
 * ctypedef npy_longdouble longdouble_t
 * 
 * ctypedef npy_cfloat      cfloat_t             # <<<<<<<<<<<<<<
 * ctypedef npy_cdouble     cdouble_t
 * ctypedef npy_clongdouble clongdouble_t
 */
typedef npy_cfloat __pyx_t_5numpy_cfloat_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":726
 * 
 * ctypedef npy_cfloat      cfloat_t
 * ctypedef npy_cdouble     cdouble_t             # <<<<<<<<<<<<<<
 * ctypedef npy_clongdouble clongdouble_t
 * 
 */
typedef npy_cdouble __pyx_t_5numpy_cdouble_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":727
 * ctypedef npy_cfloat      cfloat_t
 * ctypedef npy_cdouble     cdouble_t
 * ctypedef npy_clongdouble clongdouble_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_cdouble     complex_t
 */
typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":729
 * ctypedef npy_clongdouble clongdouble_t
 * 
 * ctypedef npy_cdouble     complex_t             # <<<<<<<<<<<<<<
 * 
 * cdef inline object PyArray_MultiIterNew1(a):
 */
typedef npy_cdouble __pyx_t_5numpy_complex_t;

/* "dysgu/map_set_utils.pxd":16
 * 
 * 
 * ctypedef enum ReadEnum_t:             # <<<<<<<<<<<<<<
 *     DISCORDANT = 0
 *     SPLIT = 1
 */
enum __pyx_t_5dysgu_13map_set_utils_ReadEnum_t {
  __pyx_e_5dysgu_13map_set_utils_DISCORDANT = 0,
  __pyx_e_5dysgu_13map_set_utils_SPLIT = 1,
  __pyx_e_5dysgu_13map_set_utils_DELETION = 2,
  __pyx_e_5dysgu_13map_set_utils_INSERTION = 3,
  __pyx_e_5dysgu_13map_set_utils_BREAKEND = 4
};
typedef enum __pyx_t_5dysgu_13map_set_utils_ReadEnum_t __pyx_t_5dysgu_13map_set_utils_ReadEnum_t;

/* "dysgu/map_set_utils.pxd":12
 * from libc.stdint cimport uint64_t, int32_t, int8_t
 * 
 * ctypedef cpp_vector[int] int_vec_t             # <<<<<<<<<<<<<<
 * ctypedef cpp_pair[int, int] get_val_result
 * 
 */
typedef std::vector<int>  __pyx_t_5dysgu_13map_set_utils_int_vec_t;

/* "dysgu/map_set_utils.pxd":13
 * 
 * ctypedef cpp_vector[int] int_vec_t
 * ctypedef cpp_pair[int, int] get_val_result             # <<<<<<<<<<<<<<
 * 
 * 
 */
typedef std::pair<int,int>  __pyx_t_5dysgu_13map_set_utils_get_val_result;

/* "dysgu/map_set_utils.pxd":99
 * 
 * 
 * cdef class Py_BasicIntervalTree:             # <<<<<<<<<<<<<<
 *     cdef BasicIntervalTree *thisptr
 * 
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_BasicIntervalTree *__pyx_vtab;
  BasicIntervalTree *thisptr;
};


/* "dysgu/map_set_utils.pxd":125
 * 
 * 
 * cdef class Py_DiGraph:             # <<<<<<<<<<<<<<
 *     """DiGraph, no weight"""
 *     cdef DiGraph *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_DiGraph *__pyx_vtab;
  DiGraph *thisptr;
};


/* "dysgu/map_set_utils.pxd":170
 * 
 * 
 * cdef class Py_SimpleGraph:             # <<<<<<<<<<<<<<
 *     """Graph"""
 *     cdef SimpleGraph *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_SimpleGraph *__pyx_vtab;
  SimpleGraph *thisptr;
};


/* "dysgu/map_set_utils.pxd":196
 * 
 * 
 * cdef class Py_Int2IntMap:             # <<<<<<<<<<<<<<
 *     """Fast integer to integer unordered map using tsl::robin-map"""
 *     cdef Int2IntMap *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *__pyx_vtab;
  Int2IntMap *thisptr;
};


/* "dysgu/map_set_utils.pxd":218
 * 
 * 
 * cdef class Py_IntSet:             # <<<<<<<<<<<<<<
 *     """Fast 32 bit int set using tsl::robin-set"""
 *     cdef IntSet *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_IntSet *__pyx_vtab;
  IntSet *thisptr;
};


/* "dysgu/map_set_utils.pxd":317
 * 
 * 
 * cdef class EventResult:             # <<<<<<<<<<<<<<
 *     """Data holder for classifying alignments into SV types"""
 *     cdef public int32_t contig_ref_start, contig_ref_end, contig2_ref_start, contig2_ref_end, contig_lc, contig_rc, contig2_lc, contig2_rc, \
 */
struct __pyx_obj_5dysgu_13map_set_utils_EventResult {
  PyObject_HEAD
  int32_t contig_ref_start;
  int32_t contig_ref_end;
  int32_t contig2_ref_start;
  int32_t contig2_ref_end;
  int32_t contig_lc;
  int32_t contig_rc;
  int32_t contig2_lc;
  int32_t contig2_rc;
  int32_t grp_id;
  int32_t event_id;
  int32_t n_expansion;
  int32_t stride;
  int32_t ref_poly_bases;
  __pyx_t_5numpy_float32_t contig_left_weight;
  __pyx_t_5numpy_float32_t contig_right_weight;
  __pyx_t_5numpy_float32_t contig2_left_weight;
  __pyx_t_5numpy_float32_t contig2_right_weight;
  __pyx_t_5numpy_float32_t ref_rep;
  __pyx_t_5numpy_float32_t compress;
  int32_t su;
  int32_t pe;
  int32_t supp;
  int32_t sc;
  int32_t NP;
  int32_t maxASsupp;
  int32_t plus;
  int32_t minus;
  int32_t spanning;
  int32_t double_clips;
  int32_t n_unmapped_mates;
  int32_t n_small_tlen;
  int32_t bnd;
  int32_t ras;
  int32_t fas;
  int32_t cipos95A;
  int32_t cipos95B;
  __pyx_t_5numpy_float32_t NMpri;
  __pyx_t_5numpy_float32_t NMsupp;
  __pyx_t_5numpy_float32_t MAPQpri;
  __pyx_t_5numpy_float32_t MAPQsupp;
  __pyx_t_5numpy_float32_t NMbase;
  __pyx_t_5numpy_float32_t n_sa;
  __pyx_t_5numpy_float32_t n_xa;
  __pyx_t_5numpy_float32_t n_gaps;
  int32_t posA;
  int32_t posB;
  int32_t svlen;
  int32_t query_gap;
  int32_t query_overlap;
  int32_t block_edge;
  int32_t ref_bases;
  int32_t remap_score;
  int32_t bad_clip_count;
  int32_t remap_ed;
  int32_t n_in_grp;
  __pyx_t_5numpy_float32_t jitter;
  __pyx_t_5numpy_float32_t sqc;
  __pyx_t_5numpy_float32_t scw;
  __pyx_t_5numpy_float32_t clip_qual_ratio;
  __pyx_t_5numpy_float32_t outer_cn;
  __pyx_t_5numpy_float32_t inner_cn;
  __pyx_t_5numpy_float32_t fcc;
  __pyx_t_5numpy_float32_t rep;
  __pyx_t_5numpy_float32_t rep_sc;
  __pyx_t_5numpy_float32_t gc;
  __pyx_t_5numpy_float32_t neigh;
  __pyx_t_5numpy_float32_t neigh10kb;
  __pyx_t_5numpy_float32_t raw_reads_10kb;
  __pyx_t_5numpy_float32_t mcov;
  __pyx_t_5numpy_float32_t strand_binom_t;
  int preciseA;
  int preciseB;
  int linked;
  int modified;
  int remapped;
  int8_t svlen_precise;
  PyObject *contig;
  PyObject *contig2;
  PyObject *svtype;
  PyObject *join_type;
  PyObject *chrA;
  PyObject *chrB;
  PyObject *exp_seq;
  PyObject *sample;
  PyObject *type;
  PyObject *partners;
  PyObject *GQ;
  PyObject *GT;
  PyObject *kind;
  PyObject *ref_seq;
  PyObject *variant_seq;
  PyObject *left_ins_seq;
  PyObject *right_ins_seq;
  PyObject *site_info;
};


/* "dysgu/sv_category.pxd":3
 * #cython: language_level=3
 * 
 * cdef class AlignmentItem:             # <<<<<<<<<<<<<<
 *     """Data holder for classifying alignments into SV types"""
 *     cdef public int chrA, chrB, priA, priB, rA, rB, posA, endA, posB, endB, strandA, strandB, left_clipA, right_clipA,\
 */
struct __pyx_obj_5dysgu_11sv_category_AlignmentItem {
  PyObject_HEAD
  int chrA;
  int chrB;
  int priA;
  int priB;
  int rA;
  int rB;
  int posA;
  int endA;
  int posB;
  int endB;
  int strandA;
  int strandB;
  int left_clipA;
  int right_clipA;
  int left_clipB;
  int right_clipB;
  int breakA_precise;
  int breakB_precise;
  int breakA;
  int breakB;
  int a_qstart;
  int a_qend;
  int b_qstart;
  int b_qend;
  int a_len;
  int b_len;
  int query_gap;
  int read_overlaps_mate;
  int size_inferred;
  int query_overlap;
  int inferred_sv_len;
  PyObject *svtype;
  PyObject *join_type;
  PyObject *read_a;
  PyObject *read_b;
};



/* "dysgu/map_set_utils.pxd":99
 * 
 * 
 * cdef class Py_BasicIntervalTree:             # <<<<<<<<<<<<<<
 *     cdef BasicIntervalTree *thisptr
 * 
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_BasicIntervalTree {
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  int (*searchInterval)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
  PyObject *(*overlappingInterval)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
  void (*index)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int __pyx_skip_dispatch);
  PyObject *(*allOverlappingIntervals)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
  int (*countOverlappingIntervals)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
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static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_BasicIntervalTree *__pyx_vtabptr_5dysgu_13map_set_utils_Py_BasicIntervalTree;


/* "dysgu/map_set_utils.pxd":125
 * 
 * 
 * cdef class Py_DiGraph:             # <<<<<<<<<<<<<<
 *     """DiGraph, no weight"""
 *     cdef DiGraph *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_DiGraph {
  int (*addNode)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *);
  int (*hasEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int, int);
  void (*addEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int, int, int);
  void (*updateEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int, int, int);
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/* "dysgu/map_set_utils.pxd":170
 * 
 * 
 * cdef class Py_SimpleGraph:             # <<<<<<<<<<<<<<
 *     """Graph"""
 *     cdef SimpleGraph *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_SimpleGraph {
  int (*addNode)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int __pyx_skip_dispatch);
  int (*hasEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int, int, int __pyx_skip_dispatch);
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static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_SimpleGraph *__pyx_vtabptr_5dysgu_13map_set_utils_Py_SimpleGraph;


/* "dysgu/map_set_utils.pxd":196
 * 
 * 
 * cdef class Py_Int2IntMap:             # <<<<<<<<<<<<<<
 *     """Fast integer to integer unordered map using tsl::robin-map"""
 *     cdef Int2IntMap *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap {
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static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *__pyx_vtabptr_5dysgu_13map_set_utils_Py_Int2IntMap;


/* "dysgu/map_set_utils.pxd":218
 * 
 * 
 * cdef class Py_IntSet:             # <<<<<<<<<<<<<<
 *     """Fast 32 bit int set using tsl::robin-set"""
 *     cdef IntSet *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_IntSet {
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/* CLineInTraceback.proto */
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#define __Pyx_CLineForTraceback(tstate, c_line)  (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
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static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
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struct __Pyx_CodeObjectCache {
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static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
static PyCodeObject *__pyx_find_code_object(int code_line);
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);

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static void __Pyx_AddTraceback(const char *funcname, int c_line,
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/* RealImag.proto */
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    #define __Pyx_CREAL(z) ((z).real())
    #define __Pyx_CIMAG(z) ((z).imag())
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    #define __Pyx_CREAL(z) (__real__(z))
    #define __Pyx_CIMAG(z) (__imag__(z))
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    #define __Pyx_CREAL(z) ((z).real)
    #define __Pyx_CIMAG(z) ((z).imag)
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    #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
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/* Arithmetic.proto */
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    #define __Pyx_c_eq_float(a, b)   ((a)==(b))
    #define __Pyx_c_sum_float(a, b)  ((a)+(b))
    #define __Pyx_c_diff_float(a, b) ((a)-(b))
    #define __Pyx_c_prod_float(a, b) ((a)*(b))
    #define __Pyx_c_quot_float(a, b) ((a)/(b))
    #define __Pyx_c_neg_float(a)     (-(a))
  #ifdef __cplusplus
    #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
    #define __Pyx_c_conj_float(z)    (::std::conj(z))
    #if 1
        #define __Pyx_c_abs_float(z)     (::std::abs(z))
        #define __Pyx_c_pow_float(a, b)  (::std::pow(a, b))
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    #define __Pyx_c_is_zero_float(z) ((z)==0)
    #define __Pyx_c_conj_float(z)    (conjf(z))
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        #define __Pyx_c_abs_float(z)     (cabsf(z))
        #define __Pyx_c_pow_float(a, b)  (cpowf(a, b))
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    static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
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    static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
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        static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
        static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex);
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/* Arithmetic.proto */
#if CYTHON_CCOMPLEX
    #define __Pyx_c_eq_double(a, b)   ((a)==(b))
    #define __Pyx_c_sum_double(a, b)  ((a)+(b))
    #define __Pyx_c_diff_double(a, b) ((a)-(b))
    #define __Pyx_c_prod_double(a, b) ((a)*(b))
    #define __Pyx_c_quot_double(a, b) ((a)/(b))
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  #ifdef __cplusplus
    #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
    #define __Pyx_c_conj_double(z)    (::std::conj(z))
    #if 1
        #define __Pyx_c_abs_double(z)     (::std::abs(z))
        #define __Pyx_c_pow_double(a, b)  (::std::pow(a, b))
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  #else
    #define __Pyx_c_is_zero_double(z) ((z)==0)
    #define __Pyx_c_conj_double(z)    (conj(z))
    #if 1
        #define __Pyx_c_abs_double(z)     (cabs(z))
        #define __Pyx_c_pow_double(a, b)  (cpow(a, b))
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 #endif
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    static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
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    static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
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/* CIntFromPy.proto */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);

/* CIntFromPy.proto */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);

/* FastTypeChecks.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
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/* CheckBinaryVersion.proto */
static int __Pyx_check_binary_version(void);

/* FunctionExport.proto */
static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig);

/* FunctionImport.proto */
static int __Pyx_ImportFunction_0_29_35(PyObject *module, const char *funcname, void (**f)(void), const char *sig);

/* InitStrings.proto */
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);


/* Module declarations from 'libcpp.vector' */

/* Module declarations from 'libcpp.utility' */

/* Module declarations from 'libcpp.pair' */

/* Module declarations from 'cpython.buffer' */

/* Module declarations from 'libc.string' */

/* Module declarations from 'libc.stdio' */

/* Module declarations from '__builtin__' */

/* Module declarations from 'cpython.type' */
static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;

/* Module declarations from 'cpython' */

/* Module declarations from 'cpython.object' */

/* Module declarations from 'cpython.ref' */

/* Module declarations from 'cpython.mem' */

/* Module declarations from 'numpy' */

/* Module declarations from 'numpy' */
static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
static PyTypeObject *__pyx_ptype_5numpy_generic = 0;
static PyTypeObject *__pyx_ptype_5numpy_number = 0;
static PyTypeObject *__pyx_ptype_5numpy_integer = 0;
static PyTypeObject *__pyx_ptype_5numpy_signedinteger = 0;
static PyTypeObject *__pyx_ptype_5numpy_unsignedinteger = 0;
static PyTypeObject *__pyx_ptype_5numpy_inexact = 0;
static PyTypeObject *__pyx_ptype_5numpy_floating = 0;
static PyTypeObject *__pyx_ptype_5numpy_complexfloating = 0;
static PyTypeObject *__pyx_ptype_5numpy_flexible = 0;
static PyTypeObject *__pyx_ptype_5numpy_character = 0;
static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;

/* Module declarations from 'libc.stdint' */

/* Module declarations from 'dysgu.map_set_utils' */
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_BasicIntervalTree = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_DiGraph = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_SimpleGraph = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_Int2IntMap = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_IntSet = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_EventResult = 0;
static int (*__pyx_f_5dysgu_13map_set_utils_is_overlapping)(int, int, int, int, int __pyx_skip_dispatch); /*proto*/

/* Module declarations from 'dysgu.sv_category' */
static PyTypeObject *__pyx_ptype_5dysgu_11sv_category_AlignmentItem = 0;
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static void __pyx_f_5dysgu_11sv_category_same_read(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *); /*proto*/
static void __pyx_f_5dysgu_11sv_category_different_read(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *); /*proto*/
static void __pyx_f_5dysgu_11sv_category_translocation(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *); /*proto*/
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int __pyx_module_is_main_dysgu__sv_category = 0;

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static PyObject *__pyx_builtin_ImportError;
static const char __pyx_k_[] = "";
static const char __pyx_k_rA[] = "rA";
static const char __pyx_k_rB[] = "rB";
static const char __pyx_k_to[] = "to";
static const char __pyx_k_BND[] = "BND";
static const char __pyx_k_DEL[] = "DEL";
static const char __pyx_k_DUP[] = "DUP";
static const char __pyx_k_INS[] = "INS";
static const char __pyx_k_INV[] = "INV";
static const char __pyx_k_TRA[] = "TRA";
static const char __pyx_k_3to3[] = "3to3";
static const char __pyx_k_3to5[] = "3to5";
static const char __pyx_k_5to3[] = "5to3";
static const char __pyx_k_5to5[] = "5to5";
static const char __pyx_k_chrA[] = "chrA";
static const char __pyx_k_chrB[] = "chrB";
static const char __pyx_k_echo[] = "echo";
static const char __pyx_k_endA[] = "endA";
static const char __pyx_k_endB[] = "endB";
static const char __pyx_k_main[] = "__main__";
static const char __pyx_k_name[] = "__name__";
static const char __pyx_k_posA[] = "posA";
static const char __pyx_k_posB[] = "posB";
static const char __pyx_k_priA[] = "priA";
static const char __pyx_k_priB[] = "priB";
static const char __pyx_k_test[] = "__test__";
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static const char __pyx_k_b_len[] = "b_len";
static const char __pyx_k_a_qend[] = "a_qend";
static const char __pyx_k_b_qend[] = "b_qend";
static const char __pyx_k_import[] = "__import__";
static const char __pyx_k_read_a[] = "read_a";
static const char __pyx_k_read_b[] = "read_b";
static const char __pyx_k_reduce[] = "__reduce__";
static const char __pyx_k_strandA[] = "strandA";
static const char __pyx_k_strandB[] = "strandB";
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static const char __pyx_k_b_qstart[] = "b_qstart";
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static const char __pyx_k_setstate[] = "__setstate__";
static const char __pyx_k_TypeError[] = "TypeError";
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static const char __pyx_k_left_clipA[] = "left_clipA";
static const char __pyx_k_left_clipB[] = "left_clipB";
static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
static const char __pyx_k_ImportError[] = "ImportError";
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static const char __pyx_k_read_overlaps_mate[] = "read_overlaps_mate";
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static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__";
static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
static PyObject *__pyx_kp_u_;
static PyObject *__pyx_kp_u_3to3;
static PyObject *__pyx_kp_u_3to5;
static PyObject *__pyx_kp_u_5to3;
static PyObject *__pyx_kp_u_5to5;
static PyObject *__pyx_n_s_AlignmentItem;
static PyObject *__pyx_n_u_BND;
static PyObject *__pyx_n_u_DEL;
static PyObject *__pyx_n_u_DUP;
static PyObject *__pyx_n_u_INS;
static PyObject *__pyx_n_u_INV;
static PyObject *__pyx_n_s_ImportError;
static PyObject *__pyx_n_u_TRA;
static PyObject *__pyx_n_s_TypeError;
static PyObject *__pyx_n_s_a_len;
static PyObject *__pyx_n_s_a_qend;
static PyObject *__pyx_n_s_a_qstart;
static PyObject *__pyx_n_s_b_len;
static PyObject *__pyx_n_s_b_qend;
static PyObject *__pyx_n_s_b_qstart;
static PyObject *__pyx_n_s_chrA;
static PyObject *__pyx_n_s_chrB;
static PyObject *__pyx_n_s_cline_in_traceback;
static PyObject *__pyx_n_s_dysgu_map_set_utils;
static PyObject *__pyx_n_s_echo;
static PyObject *__pyx_n_s_endA;
static PyObject *__pyx_n_s_endB;
static PyObject *__pyx_n_s_getstate;
static PyObject *__pyx_n_s_import;
static PyObject *__pyx_n_s_left_clipA;
static PyObject *__pyx_n_s_left_clipB;
static PyObject *__pyx_n_s_main;
static PyObject *__pyx_n_s_name;
static PyObject *__pyx_kp_s_no_default___reduce___due_to_non;
static PyObject *__pyx_kp_u_numpy_core_multiarray_failed_to;
static PyObject *__pyx_kp_u_numpy_core_umath_failed_to_impor;
static PyObject *__pyx_n_s_posA;
static PyObject *__pyx_n_s_posB;
static PyObject *__pyx_n_s_priA;
static PyObject *__pyx_n_s_priB;
static PyObject *__pyx_n_s_pyx_vtable;
static PyObject *__pyx_n_s_rA;
static PyObject *__pyx_n_s_rB;
static PyObject *__pyx_n_s_read_a;
static PyObject *__pyx_n_s_read_b;
static PyObject *__pyx_n_s_read_overlaps_mate;
static PyObject *__pyx_n_s_reduce;
static PyObject *__pyx_n_s_reduce_cython;
static PyObject *__pyx_n_s_reduce_ex;
static PyObject *__pyx_n_s_right_clipA;
static PyObject *__pyx_n_s_right_clipB;
static PyObject *__pyx_n_s_setstate;
static PyObject *__pyx_n_s_setstate_cython;
static PyObject *__pyx_n_s_strandA;
static PyObject *__pyx_n_s_strandB;
static PyObject *__pyx_n_s_test;
static PyObject *__pyx_n_u_to;
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem___cinit__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, int __pyx_v_chrA, int __pyx_v_chrB, int __pyx_v_priA, int __pyx_v_priB, int __pyx_v_rA, int __pyx_v_rB, int __pyx_v_posA, int __pyx_v_endA, int __pyx_v_posB, int __pyx_v_endB, int __pyx_v_strandA, int __pyx_v_strandB, int __pyx_v_left_clipA, int __pyx_v_right_clipA, int __pyx_v_left_clipB, int __pyx_v_right_clipB, int __pyx_v_a_qstart, int __pyx_v_a_qend, int __pyx_v_b_qstart, int __pyx_v_b_qend, int __pyx_v_a_len, int __pyx_v_b_len, int __pyx_v_read_overlaps_mate, PyObject *__pyx_v_read_a, PyObject *__pyx_v_read_b); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4chrA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4chrA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4chrB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4chrB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4priA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4priA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4priB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4priB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_2rA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_2rA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_2rB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_2rB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4posA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4posA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4endA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4endA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4posB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4posB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4endB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_4endB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_7strandA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_7strandA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_7strandB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_7strandB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_10left_clipA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_10left_clipA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_11right_clipA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_11right_clipA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_10left_clipB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_10left_clipB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_11right_clipB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_11right_clipB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_14breakA_precise___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_14breakA_precise_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_14breakB_precise___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_14breakB_precise_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_6breakA___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6breakA_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_6breakB___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6breakB_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_8a_qstart___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_8a_qstart_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_6a_qend___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6a_qend_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_8b_qstart___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_8b_qstart_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_6b_qend___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6b_qend_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_5a_len___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_5a_len_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_5b_len___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_5b_len_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_9query_gap___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_9query_gap_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_18read_overlaps_mate___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_18read_overlaps_mate_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_13size_inferred___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_13size_inferred_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_13query_overlap___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_13query_overlap_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_15inferred_sv_len___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_15inferred_sv_len_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_6svtype___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6svtype_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6svtype_4__del__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_9join_type___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_9join_type_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_9join_type_4__del__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_6read_a___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6read_a_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6read_a_4__del__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_6read_b___get__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6read_b_2__set__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_5dysgu_11sv_category_13AlignmentItem_6read_b_4__del__(struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_2__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_11sv_category_13AlignmentItem_4__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_tp_new_5dysgu_11sv_category_AlignmentItem(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_int_0;
static PyObject *__pyx_tuple__2;
static PyObject *__pyx_tuple__3;
static PyObject *__pyx_tuple__4;
static PyObject *__pyx_tuple__5;
/* Late includes */

/* "dysgu/sv_category.pyx":14
 *     # cdef public str svtype, join_type
 *     # cdef public object read_a, read_b
 *     def __cinit__(self, int chrA, int chrB, int priA, int priB, int rA, int rB, int posA, int endA, int posB, int endB,             # <<<<<<<<<<<<<<
 *                   int strandA, int strandB, int left_clipA, int right_clipA, int left_clipB, int right_clipB,
 *                   int a_qstart, int a_qend, int b_qstart, int b_qend, int a_len, int b_len,
 */

/* Python wrapper */
static int __pyx_pw_5dysgu_11sv_category_13AlignmentItem_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_pw_5dysgu_11sv_category_13AlignmentItem_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  int __pyx_v_chrA;
  int __pyx_v_chrB;
  int __pyx_v_priA;
  int __pyx_v_priB;
  int __pyx_v_rA;
  int __pyx_v_rB;
  int __pyx_v_posA;
  int __pyx_v_endA;
  int __pyx_v_posB;
  int __pyx_v_endB;
  int __pyx_v_strandA;
  int __pyx_v_strandB;
  int __pyx_v_left_clipA;
  int __pyx_v_right_clipA;
  int __pyx_v_left_clipB;
  int __pyx_v_right_clipB;
  int __pyx_v_a_qstart;
  int __pyx_v_a_qend;
  int __pyx_v_b_qstart;
  int __pyx_v_b_qend;
  int __pyx_v_a_len;
  int __pyx_v_b_len;
  int __pyx_v_read_overlaps_mate;
  PyObject *__pyx_v_read_a = 0;
  PyObject *__pyx_v_read_b = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_chrA,&__pyx_n_s_chrB,&__pyx_n_s_priA,&__pyx_n_s_priB,&__pyx_n_s_rA,&__pyx_n_s_rB,&__pyx_n_s_posA,&__pyx_n_s_endA,&__pyx_n_s_posB,&__pyx_n_s_endB,&__pyx_n_s_strandA,&__pyx_n_s_strandB,&__pyx_n_s_left_clipA,&__pyx_n_s_right_clipA,&__pyx_n_s_left_clipB,&__pyx_n_s_right_clipB,&__pyx_n_s_a_qstart,&__pyx_n_s_a_qend,&__pyx_n_s_b_qstart,&__pyx_n_s_b_qend,&__pyx_n_s_a_len,&__pyx_n_s_b_len,&__pyx_n_s_read_overlaps_mate,&__pyx_n_s_read_a,&__pyx_n_s_read_b,0};
    PyObject* values[25] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case 25: values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
        CYTHON_FALLTHROUGH;
        case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
        CYTHON_FALLTHROUGH;
        case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
        CYTHON_FALLTHROUGH;
        case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
        CYTHON_FALLTHROUGH;
        case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
        CYTHON_FALLTHROUGH;
        case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
        CYTHON_FALLTHROUGH;
        case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
        CYTHON_FALLTHROUGH;
        case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
        CYTHON_FALLTHROUGH;
        case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
        CYTHON_FALLTHROUGH;
        case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
        CYTHON_FALLTHROUGH;
        case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
        CYTHON_FALLTHROUGH;
        case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
        CYTHON_FALLTHROUGH;
        case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
        CYTHON_FALLTHROUGH;
        case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
        CYTHON_FALLTHROUGH;
        case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
        CYTHON_FALLTHROUGH;
        case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
        CYTHON_FALLTHROUGH;
        case  9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
        CYTHON_FALLTHROUGH;
        case  8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
        CYTHON_FALLTHROUGH;
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        CYTHON_FALLTHROUGH;
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
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      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
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        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_chrA)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
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 * 
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 */
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 * 
 *             v.breakB = v.posB
 *             if v.left_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 * 
 *             if v.endA >= v.posB:             # <<<<<<<<<<<<<<
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 *                 v.join_type = "3to5"
 */
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 * 
 *             if v.endA >= v.posB:
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 *                 v.join_type = "3to5"
 * 
 */
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        __Pyx_GIVEREF(__pyx_n_u_INS);
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 *                 v.join_type = "3to5"             # <<<<<<<<<<<<<<
 * 
 *             else:
 */
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        __Pyx_GIVEREF(__pyx_kp_u_3to5);
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 *                 v.breakB_precise = 1
 * 
 *             if v.endA >= v.posB:             # <<<<<<<<<<<<<<
 *                 v.svtype = "INS"
 *                 v.join_type = "3to5"
 */
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 * 
 *             else:
 *                 v.svtype = "DEL"             # <<<<<<<<<<<<<<
 *                 v.join_type = "3to5"
 * 
 */
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        __Pyx_GIVEREF(__pyx_n_u_DEL);
        __Pyx_GOTREF(__pyx_v_v->svtype);
        __Pyx_DECREF(__pyx_v_v->svtype);
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 *                 v.join_type = "3to5"             # <<<<<<<<<<<<<<
 * 
 *         elif v.strandA == 5 and v.strandB == 3:  # DUP type
 */
        __Pyx_INCREF(__pyx_kp_u_3to5);
        __Pyx_GIVEREF(__pyx_kp_u_3to5);
        __Pyx_GOTREF(__pyx_v_v->join_type);
        __Pyx_DECREF(__pyx_v_v->join_type);
        __pyx_v_v->join_type = __pyx_kp_u_3to5;
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 * 
 *         if v.strandA == 3 and v.strandB == 5:  # DEL type             # <<<<<<<<<<<<<<
 *             v.breakA = v.endA
 *             if v.right_clipA:
 */
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    /* "dysgu/sv_category.pyx":78
 *                 v.join_type = "3to5"
 * 
 *         elif v.strandA == 5 and v.strandB == 3:  # DUP type             # <<<<<<<<<<<<<<
 *             v.breakA = v.posA
 *             if v.left_clipA:
 */
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 * 
 *         elif v.strandA == 5 and v.strandB == 3:  # DUP type
 *             v.breakA = v.posA             # <<<<<<<<<<<<<<
 *             if v.left_clipA:
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 */
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 *             v.breakA = v.posA
 *             if v.left_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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 *             v.breakA = v.posA
 *             if v.left_clipA:
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 * 
 *             v.breakB = v.endB
 */
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 *         elif v.strandA == 5 and v.strandB == 3:  # DUP type
 *             v.breakA = v.posA
 *             if v.left_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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 *                 v.breakA_precise = 1
 * 
 *             v.breakB = v.endB             # <<<<<<<<<<<<<<
 *             if v.right_clipB:
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 */
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 * 
 *             v.breakB = v.endB
 *             if v.right_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 *             v.breakB = v.endB
 *             if v.right_clipB:
 *                 v.breakB_precise = 1             # <<<<<<<<<<<<<<
 * 
 *             v.svtype = "DUP"
 */
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        /* "dysgu/sv_category.pyx":84
 * 
 *             v.breakB = v.endB
 *             if v.right_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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      /* "dysgu/sv_category.pyx":87
 *                 v.breakB_precise = 1
 * 
 *             v.svtype = "DUP"             # <<<<<<<<<<<<<<
 *             v.join_type = "5to3"
 * 
 */
      __Pyx_INCREF(__pyx_n_u_DUP);
      __Pyx_GIVEREF(__pyx_n_u_DUP);
      __Pyx_GOTREF(__pyx_v_v->svtype);
      __Pyx_DECREF(__pyx_v_v->svtype);
      __pyx_v_v->svtype = __pyx_n_u_DUP;

      /* "dysgu/sv_category.pyx":88
 * 
 *             v.svtype = "DUP"
 *             v.join_type = "5to3"             # <<<<<<<<<<<<<<
 * 
 *         else:  # INV type
 */
      __Pyx_INCREF(__pyx_kp_u_5to3);
      __Pyx_GIVEREF(__pyx_kp_u_5to3);
      __Pyx_GOTREF(__pyx_v_v->join_type);
      __Pyx_DECREF(__pyx_v_v->join_type);
      __pyx_v_v->join_type = __pyx_kp_u_5to3;

      /* "dysgu/sv_category.pyx":78
 *                 v.join_type = "3to5"
 * 
 *         elif v.strandA == 5 and v.strandB == 3:  # DUP type             # <<<<<<<<<<<<<<
 *             v.breakA = v.posA
 *             if v.left_clipA:
 */
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 *             if v.strandA == 5:             # <<<<<<<<<<<<<<
 * 
 *                 if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):
 */
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        /* "dysgu/sv_category.pyx":94
 *             if v.strandA == 5:
 * 
 *                 if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):             # <<<<<<<<<<<<<<
 *                     v.breakA = v.endA
 *                     if v.right_clipA:
 */
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        } else {
          __pyx_t_1 = __pyx_t_4;
          goto __pyx_L19_bool_binop_done;
        }
        __pyx_t_4 = (__pyx_v_v->right_clipA != 0);
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          goto __pyx_L19_bool_binop_done;
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          /* "dysgu/sv_category.pyx":95
 * 
 *                 if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):
 *                     v.breakA = v.endA             # <<<<<<<<<<<<<<
 *                     if v.right_clipA:
 *                         v.breakA_precise = 1
 */
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 *                 if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):
 *                     v.breakA = v.endA
 *                     if v.right_clipA:             # <<<<<<<<<<<<<<
 *                         v.breakA_precise = 1
 * 
 */
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            /* "dysgu/sv_category.pyx":97
 *                     v.breakA = v.endA
 *                     if v.right_clipA:
 *                         v.breakA_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                     v.breakB = v.endB
 */
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            /* "dysgu/sv_category.pyx":96
 *                 if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):
 *                     v.breakA = v.endA
 *                     if v.right_clipA:             # <<<<<<<<<<<<<<
 *                         v.breakA_precise = 1
 * 
 */
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 *                         v.breakA_precise = 1
 * 
 *                     v.breakB = v.endB             # <<<<<<<<<<<<<<
 *                     if v.right_clipB:
 *                         v.breakB_precise = 1
 */
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          /* "dysgu/sv_category.pyx":100
 * 
 *                     v.breakB = v.endB
 *                     if v.right_clipB:             # <<<<<<<<<<<<<<
 *                         v.breakB_precise = 1
 * 
 */
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            /* "dysgu/sv_category.pyx":101
 *                     v.breakB = v.endB
 *                     if v.right_clipB:
 *                         v.breakB_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                     v.svtype = "INV"
 */
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            /* "dysgu/sv_category.pyx":100
 * 
 *                     v.breakB = v.endB
 *                     if v.right_clipB:             # <<<<<<<<<<<<<<
 *                         v.breakB_precise = 1
 * 
 */
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 *                         v.breakB_precise = 1
 * 
 *                     v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                     v.join_type = "3to3"
 * 
 */
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          __Pyx_GIVEREF(__pyx_n_u_INV);
          __Pyx_GOTREF(__pyx_v_v->svtype);
          __Pyx_DECREF(__pyx_v_v->svtype);
          __pyx_v_v->svtype = __pyx_n_u_INV;

          /* "dysgu/sv_category.pyx":104
 * 
 *                     v.svtype = "INV"
 *                     v.join_type = "3to3"             # <<<<<<<<<<<<<<
 * 
 *                 else:
 */
          __Pyx_INCREF(__pyx_kp_u_3to3);
          __Pyx_GIVEREF(__pyx_kp_u_3to3);
          __Pyx_GOTREF(__pyx_v_v->join_type);
          __Pyx_DECREF(__pyx_v_v->join_type);
          __pyx_v_v->join_type = __pyx_kp_u_3to3;

          /* "dysgu/sv_category.pyx":94
 *             if v.strandA == 5:
 * 
 *                 if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):             # <<<<<<<<<<<<<<
 *                     v.breakA = v.endA
 *                     if v.right_clipA:
 */
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        /* "dysgu/sv_category.pyx":107
 * 
 *                 else:
 *                     v.breakA = v.posA             # <<<<<<<<<<<<<<
 *                     if v.left_clipA:
 *                         v.breakA_precise = 1
 */
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 *                 else:
 *                     v.breakA = v.posA
 *                     if v.left_clipA:             # <<<<<<<<<<<<<<
 *                         v.breakA_precise = 1
 * 
 */
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            /* "dysgu/sv_category.pyx":109
 *                     v.breakA = v.posA
 *                     if v.left_clipA:
 *                         v.breakA_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                     v.breakB = v.posB
 */
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 *                 else:
 *                     v.breakA = v.posA
 *                     if v.left_clipA:             # <<<<<<<<<<<<<<
 *                         v.breakA_precise = 1
 * 
 */
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          /* "dysgu/sv_category.pyx":111
 *                         v.breakA_precise = 1
 * 
 *                     v.breakB = v.posB             # <<<<<<<<<<<<<<
 *                     if v.right_clipB:
 *                         v.breakB_precise = 1
 */
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 * 
 *                     v.breakB = v.posB
 *                     if v.right_clipB:             # <<<<<<<<<<<<<<
 *                         v.breakB_precise = 1
 * 
 */
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            /* "dysgu/sv_category.pyx":113
 *                     v.breakB = v.posB
 *                     if v.right_clipB:
 *                         v.breakB_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                     v.svtype = "INV"
 */
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 * 
 *                     v.breakB = v.posB
 *                     if v.right_clipB:             # <<<<<<<<<<<<<<
 *                         v.breakB_precise = 1
 * 
 */
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          /* "dysgu/sv_category.pyx":115
 *                         v.breakB_precise = 1
 * 
 *                     v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                     v.join_type = "5to5"
 * 
 */
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          __Pyx_GIVEREF(__pyx_n_u_INV);
          __Pyx_GOTREF(__pyx_v_v->svtype);
          __Pyx_DECREF(__pyx_v_v->svtype);
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 * 
 *                     v.svtype = "INV"
 *                     v.join_type = "5to5"             # <<<<<<<<<<<<<<
 * 
 *             else:  # strand == 3
 */
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          __Pyx_GIVEREF(__pyx_kp_u_5to5);
          __Pyx_GOTREF(__pyx_v_v->join_type);
          __Pyx_DECREF(__pyx_v_v->join_type);
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 *         else:  # INV type
 *             # Break to left or right
 *             if v.strandA == 5:             # <<<<<<<<<<<<<<
 * 
 *                 if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):
 */
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 * 
 *             else:  # strand == 3
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 * 
 *                     if (v.posA < v.posB and v.left_clipB) or (v.posB < v.posA and v.left_clipA):  # guess right
 */
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          goto __pyx_L31_bool_binop_done;
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          goto __pyx_L29_bool_binop_done;
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 *                 if not (v.right_clipA or v.right_clipB) and (v.left_clipA or v.left_clipB):  # only left clips
 * 
 *                     if (v.posA < v.posB and v.left_clipB) or (v.posB < v.posA and v.left_clipA):  # guess right             # <<<<<<<<<<<<<<
 *                         v.breakA = v.endA
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 */
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          } else {
          }
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          } else {
            __pyx_t_1 = __pyx_t_2;
            goto __pyx_L35_bool_binop_done;
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          } else {
            __pyx_t_1 = __pyx_t_2;
            goto __pyx_L35_bool_binop_done;
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          __pyx_t_2 = (__pyx_v_v->left_clipA != 0);
          __pyx_t_1 = __pyx_t_2;
          __pyx_L35_bool_binop_done:;
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            /* "dysgu/sv_category.pyx":122
 * 
 *                     if (v.posA < v.posB and v.left_clipB) or (v.posB < v.posA and v.left_clipA):  # guess right
 *                         v.breakA = v.endA             # <<<<<<<<<<<<<<
 *                         if v.right_clipA:
 *                             v.breakA_precise = 1
 */
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            /* "dysgu/sv_category.pyx":123
 *                     if (v.posA < v.posB and v.left_clipB) or (v.posB < v.posA and v.left_clipA):  # guess right
 *                         v.breakA = v.endA
 *                         if v.right_clipA:             # <<<<<<<<<<<<<<
 *                             v.breakA_precise = 1
 * 
 */
            __pyx_t_1 = (__pyx_v_v->right_clipA != 0);
            if (__pyx_t_1) {

              /* "dysgu/sv_category.pyx":124
 *                         v.breakA = v.endA
 *                         if v.right_clipA:
 *                             v.breakA_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                         v.breakB = v.endB
 */
              __pyx_v_v->breakA_precise = 1;

              /* "dysgu/sv_category.pyx":123
 *                     if (v.posA < v.posB and v.left_clipB) or (v.posB < v.posA and v.left_clipA):  # guess right
 *                         v.breakA = v.endA
 *                         if v.right_clipA:             # <<<<<<<<<<<<<<
 *                             v.breakA_precise = 1
 * 
 */
            }

            /* "dysgu/sv_category.pyx":126
 *                             v.breakA_precise = 1
 * 
 *                         v.breakB = v.endB             # <<<<<<<<<<<<<<
 *                         if v.right_clipB:
 *                             v.breakB_precise = 1
 */
            __pyx_t_3 = __pyx_v_v->endB;
            __pyx_v_v->breakB = __pyx_t_3;

            /* "dysgu/sv_category.pyx":127
 * 
 *                         v.breakB = v.endB
 *                         if v.right_clipB:             # <<<<<<<<<<<<<<
 *                             v.breakB_precise = 1
 * 
 */
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 *                         if v.right_clipB:
 *                             v.breakB_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                         v.svtype = "INV"
 */
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 * 
 *                         v.breakB = v.endB
 *                         if v.right_clipB:             # <<<<<<<<<<<<<<
 *                             v.breakB_precise = 1
 * 
 */
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 *                             v.breakB_precise = 1
 * 
 *                         v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                         v.join_type = "3to3"
 * 
 */
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            __Pyx_GIVEREF(__pyx_n_u_INV);
            __Pyx_GOTREF(__pyx_v_v->svtype);
            __Pyx_DECREF(__pyx_v_v->svtype);
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 * 
 *                         v.svtype = "INV"
 *                         v.join_type = "3to3"             # <<<<<<<<<<<<<<
 * 
 *                     else:  # guess left
 */
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            __Pyx_GIVEREF(__pyx_kp_u_3to3);
            __Pyx_GOTREF(__pyx_v_v->join_type);
            __Pyx_DECREF(__pyx_v_v->join_type);
            __pyx_v_v->join_type = __pyx_kp_u_3to3;

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 *                 if not (v.right_clipA or v.right_clipB) and (v.left_clipA or v.left_clipB):  # only left clips
 * 
 *                     if (v.posA < v.posB and v.left_clipB) or (v.posB < v.posA and v.left_clipA):  # guess right             # <<<<<<<<<<<<<<
 *                         v.breakA = v.endA
 *                         if v.right_clipA:
 */
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 * 
 *                     else:  # guess left
 *                         v.breakA = v.posA             # <<<<<<<<<<<<<<
 *                         if v.left_clipA:
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 */
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 *                     else:  # guess left
 *                         v.breakA = v.posA
 *                         if v.left_clipA:             # <<<<<<<<<<<<<<
 *                             v.breakA_precise = 1
 * 
 */
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 *                         v.breakA = v.posA
 *                         if v.left_clipA:
 *                             v.breakA_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                         v.breakB = v.posB
 */
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 *                     else:  # guess left
 *                         v.breakA = v.posA
 *                         if v.left_clipA:             # <<<<<<<<<<<<<<
 *                             v.breakA_precise = 1
 * 
 */
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            /* "dysgu/sv_category.pyx":138
 *                             v.breakA_precise = 1
 * 
 *                         v.breakB = v.posB             # <<<<<<<<<<<<<<
 *                         if v.left_clipB:
 *                             v.breakB_precise = 1
 */
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 * 
 *                         v.breakB = v.posB
 *                         if v.left_clipB:             # <<<<<<<<<<<<<<
 *                             v.breakB_precise = 1
 * 
 */
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 *                         v.breakB = v.posB
 *                         if v.left_clipB:
 *                             v.breakB_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                         v.svtype = "INV"
 */
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 * 
 *                         v.breakB = v.posB
 *                         if v.left_clipB:             # <<<<<<<<<<<<<<
 *                             v.breakB_precise = 1
 * 
 */
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 *                             v.breakB_precise = 1
 * 
 *                         v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                         v.join_type = "5to5"
 * 
 */
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            __Pyx_GIVEREF(__pyx_n_u_INV);
            __Pyx_GOTREF(__pyx_v_v->svtype);
            __Pyx_DECREF(__pyx_v_v->svtype);
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 * 
 *                         v.svtype = "INV"
 *                         v.join_type = "5to5"             # <<<<<<<<<<<<<<
 * 
 *                 else:  # either no clips or right clips
 */
            __Pyx_INCREF(__pyx_kp_u_5to5);
            __Pyx_GIVEREF(__pyx_kp_u_5to5);
            __Pyx_GOTREF(__pyx_v_v->join_type);
            __Pyx_DECREF(__pyx_v_v->join_type);
            __pyx_v_v->join_type = __pyx_kp_u_5to5;
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 * 
 *             else:  # strand == 3
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 * 
 *                     if (v.posA < v.posB and v.left_clipB) or (v.posB < v.posA and v.left_clipA):  # guess right
 */
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 *                 else:  # either no clips or right clips
 * 
 *                     v.breakA = v.endA             # <<<<<<<<<<<<<<
 *                     if v.left_clipA:
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 */
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 * 
 *                     v.breakA = v.endA
 *                     if v.left_clipA:             # <<<<<<<<<<<<<<
 *                         v.breakA_precise = 1
 * 
 */
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 *                     v.breakA = v.endA
 *                     if v.left_clipA:
 *                         v.breakA_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                     v.breakB = v.endB
 */
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 * 
 *                     v.breakA = v.endA
 *                     if v.left_clipA:             # <<<<<<<<<<<<<<
 *                         v.breakA_precise = 1
 * 
 */
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          /* "dysgu/sv_category.pyx":151
 *                         v.breakA_precise = 1
 * 
 *                     v.breakB = v.endB             # <<<<<<<<<<<<<<
 *                     if v.right_clipB:
 *                         v.breakB_precise = 1
 */
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 * 
 *                     v.breakB = v.endB
 *                     if v.right_clipB:             # <<<<<<<<<<<<<<
 *                         v.breakB_precise = 1
 * 
 */
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 *                     v.breakB = v.endB
 *                     if v.right_clipB:
 *                         v.breakB_precise = 1             # <<<<<<<<<<<<<<
 * 
 *                     v.svtype = "INV"
 */
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 * 
 *                     v.breakB = v.endB
 *                     if v.right_clipB:             # <<<<<<<<<<<<<<
 *                         v.breakB_precise = 1
 * 
 */
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 *                         v.breakB_precise = 1
 * 
 *                     v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                     v.join_type = "3to3"
 * 
 */
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          __Pyx_GIVEREF(__pyx_n_u_INV);
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 * 
 *                     v.svtype = "INV"
 *                     v.join_type = "3to3"             # <<<<<<<<<<<<<<
 * 
 *     else:  # B < A
 */
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          __Pyx_GIVEREF(__pyx_kp_u_3to3);
          __Pyx_GOTREF(__pyx_v_v->join_type);
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 * 
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 * 
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 */
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 * 
 *         if v.strandA == 5 and v.strandB == 3:  # DEL type             # <<<<<<<<<<<<<<
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 *             if v.left_clipA:
 */
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 * 
 *         if v.strandA == 5 and v.strandB == 3:  # DEL type
 *             v.breakA = v.posA             # <<<<<<<<<<<<<<
 *             if v.left_clipA:
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 */
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 *             v.breakA = v.posA
 *             if v.left_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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 *             v.breakA = v.posA
 *             if v.left_clipA:
 *                 v.breakA_precise = 1             # <<<<<<<<<<<<<<
 * 
 *             v.breakB = v.endB
 */
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 *         if v.strandA == 5 and v.strandB == 3:  # DEL type
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 *             if v.left_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
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 */
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 * 
 *             v.breakB = v.endB             # <<<<<<<<<<<<<<
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 */
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 * 
 *             v.breakB = v.endB
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 *                 v.breakB_precise = 1
 * 
 */
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 *             if v.right_clipB:
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 * 
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 */
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 * 
 *             v.breakB = v.endB
 *             if v.right_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 *                 v.breakB_precise = 1
 * 
 *             if v.endB >= v.posA:             # <<<<<<<<<<<<<<
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 */
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 * 
 *             if v.endB >= v.posA:
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 *                 v.join_type = "3to5"
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 */
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 *                 v.join_type = "3to5"             # <<<<<<<<<<<<<<
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 *             else:
 */
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 *                 v.breakB_precise = 1
 * 
 *             if v.endB >= v.posA:             # <<<<<<<<<<<<<<
 *                 v.svtype = "INS"
 *                 v.join_type = "3to5"
 */
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 * 
 *             else:
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 *                 v.join_type = "3to5"
 * 
 */
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 *                 v.join_type = "3to5"             # <<<<<<<<<<<<<<
 * 
 *         elif v.strandB == 5 and v.strandA == 3:  # DUP type
 */
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        __pyx_v_v->join_type = __pyx_kp_u_3to5;
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 *     else:  # B < A
 * 
 *         if v.strandA == 5 and v.strandB == 3:  # DEL type             # <<<<<<<<<<<<<<
 *             v.breakA = v.posA
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 */
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 *                 v.join_type = "3to5"
 * 
 *         elif v.strandB == 5 and v.strandA == 3:  # DUP type             # <<<<<<<<<<<<<<
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 */
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 * 
 *         elif v.strandB == 5 and v.strandA == 3:  # DUP type
 *             v.breakA = v.endA             # <<<<<<<<<<<<<<
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 */
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 *             v.breakA = v.endA
 *             if v.right_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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 *             if v.right_clipA:
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 * 
 *             v.breakB = v.posB
 */
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 *         elif v.strandB == 5 and v.strandA == 3:  # DUP type
 *             v.breakA = v.endA
 *             if v.right_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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 *                 v.breakA_precise = 1
 * 
 *             v.breakB = v.posB             # <<<<<<<<<<<<<<
 *             if v.left_clipB:
 *                 v.breakB_precise = 1
 */
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 * 
 *             v.breakB = v.posB
 *             if v.left_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 *             v.breakB = v.posB
 *             if v.left_clipB:
 *                 v.breakB_precise = 1             # <<<<<<<<<<<<<<
 * 
 *             v.svtype = "DUP"
 */
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 * 
 *             v.breakB = v.posB
 *             if v.left_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 *                 v.breakB_precise = 1
 * 
 *             v.svtype = "DUP"             # <<<<<<<<<<<<<<
 *             v.join_type = "5to3"
 * 
 */
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      __Pyx_GIVEREF(__pyx_n_u_DUP);
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      __Pyx_DECREF(__pyx_v_v->svtype);
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 * 
 *             v.svtype = "DUP"
 *             v.join_type = "5to3"             # <<<<<<<<<<<<<<
 * 
 *             # INV type
 */
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      __Pyx_GIVEREF(__pyx_kp_u_5to3);
      __Pyx_GOTREF(__pyx_v_v->join_type);
      __Pyx_DECREF(__pyx_v_v->join_type);
      __pyx_v_v->join_type = __pyx_kp_u_5to3;

      /* "dysgu/sv_category.pyx":177
 *                 v.join_type = "3to5"
 * 
 *         elif v.strandB == 5 and v.strandA == 3:  # DUP type             # <<<<<<<<<<<<<<
 *             v.breakA = v.endA
 *             if v.right_clipA:
 */
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 * 
 *             # INV type
 *         elif v.strandA == 5:             # <<<<<<<<<<<<<<
 * 
 *             if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):
 */
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 *         elif v.strandA == 5:
 * 
 *             if not (v.left_clipA or v.left_clipB) and (v.right_clipA or v.right_clipB):             # <<<<<<<<<<<<<<
 *                 v.breakA = v.endA
 *                 if v.right_clipA:
 */
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        /* "dysgu/sv_category.pyx":193
 * 
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 *                 if v.a_qstart > v.b_qstart:  # B is first on query seq
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 *                 if v.a_qstart > v.b_qstart:  # B is first on query seq             # <<<<<<<<<<<<<<
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 */
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 * 
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 */
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 * 
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 *                     v.breakB_precise = 1
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 */
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 * 
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 */
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 */
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 *                     v.inferred_sv_len = ref_gap
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 */
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          __Pyx_GIVEREF(__pyx_kp_u_3to5);
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 *                     v.join_type = "3to5"
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 *             elif not v.right_clipA and not v.left_clipB:
 */
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 *             elif not v.left_clipA and not v.right_clipB:             # <<<<<<<<<<<<<<
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 */
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 *             elif not v.right_clipA and not v.left_clipB:
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 *                     v.breakA_precise = 1
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 */
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 */
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 *                     v.breakA_precise = 1
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 */
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 *                 v.svtype = "DUP"
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 */
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 *                     v.breakB_precise = 1
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 */
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 *                 v.svtype = "DUP"             # <<<<<<<<<<<<<<
 *                 v.join_type = "5to3"
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 */
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 * 
 *             elif not v.left_clipA and not v.left_clipB:
 */
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 * 
 *             elif not v.right_clipA and not v.left_clipB:             # <<<<<<<<<<<<<<
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 */
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 *                 v.join_type = "5to3"
 * 
 *             elif not v.left_clipA and not v.left_clipB:             # <<<<<<<<<<<<<<
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 * 
 *             elif not v.left_clipA and not v.left_clipB:
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 */
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 *                     v.breakA_precise = 1
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 */
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 *                     v.breakA_precise = 1
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 */
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 *                     v.breakB_precise = 1
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 */
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 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "3to3"
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 */
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 *                 v.svtype = "INV"
 *                 v.join_type = "3to3"             # <<<<<<<<<<<<<<
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 *             elif not v.left_clipA and not v.left_clipB:             # <<<<<<<<<<<<<<
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 */
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 *                     v.breakB_precise = 1
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 * 
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 */
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 */
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 * 
 *                 v.breakB = v.endB             # <<<<<<<<<<<<<<
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 */
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 * 
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 */
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 *                 v.breakB = v.endB
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 *                     v.breakB_precise = 1
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 */
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 * 
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "3to3"
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 */
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 *                 v.svtype = "INV"
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 *             # Break left
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 * 
 *             # Break right
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 *                 v.breakA = v.endA
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 * 
 *             # Break left
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 */
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 *                     v.breakA_precise = 1
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 */
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 *                 if v.left_clipA:
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 * 
 *                 v.breakB = v.posB
 */
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 *             elif not v.right_clipA and not v.right_clipB:
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 *                     v.breakA_precise = 1
 * 
 */
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 * 
 *                 v.breakB = v.posB             # <<<<<<<<<<<<<<
 *                 if v.left_clipB:
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 */
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 */
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 * 
 *                 v.svtype = "INV"
 */
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 *                     v.breakB_precise = 1
 * 
 */
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 * 
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "5to5"
 * 
 */
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 * 
 *                 v.svtype = "INV"
 *                 v.join_type = "5to5"             # <<<<<<<<<<<<<<
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 * 
 *             # Break left
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 */
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 * 
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 * 
 *             elif is_overlapping(v.posA, v.endA, v.posB, v.endB):  # Inverted duplication
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 */
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 */
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 *                 v.breakB = v.endB
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 */
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 */
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 *                 if v.right_clipB:
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 */
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 * 
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 */
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 *                 v.svtype = "INV"
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 *                 v.breakB = v.posB
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "3to5"
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 */
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 *                 v.svtype = "INV"
 *                 v.join_type = "3to5"             # <<<<<<<<<<<<<<
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 */
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        __Pyx_GIVEREF(__pyx_kp_u_3to5);
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 *                 v.breakB = v.endB             # <<<<<<<<<<<<<<
 *                 v.svtype = "INV"
 *                 v.join_type = "5to3"
 */
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 *                 v.breakB = v.endB
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "5to3"
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 */
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        __Pyx_GIVEREF(__pyx_n_u_INV);
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        /* "dysgu/sv_category.pyx":403
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 *                 v.svtype = "INV"
 *                 v.join_type = "5to3"             # <<<<<<<<<<<<<<
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 *         else:  # INV type
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        __Pyx_INCREF(__pyx_kp_u_5to3);
        __Pyx_GIVEREF(__pyx_kp_u_5to3);
        __Pyx_GOTREF(__pyx_v_v->join_type);
        __Pyx_DECREF(__pyx_v_v->join_type);
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 */
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 *                 v.breakB_precise = 1
 *                 v.breakA = v.posA             # <<<<<<<<<<<<<<
 *                 v.breakB = v.posB
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        /* "dysgu/sv_category.pyx":411
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 *                 v.breakA = v.posA
 *                 v.breakB = v.posB             # <<<<<<<<<<<<<<
 *                 v.svtype = "INV"
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 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "5to5"
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 *                 v.svtype = "INV"
 *                 v.join_type = "5to5"             # <<<<<<<<<<<<<<
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        __Pyx_DECREF(__pyx_v_v->join_type);
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 */
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 *             # Break right
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 */
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 *                 v.breakB = v.endB             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
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 *                 v.breakB_precise = 1
 *                 v.svtype = "INV"
 */
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 *                 v.breakA_precise = 1
 *                 v.breakB_precise = 1             # <<<<<<<<<<<<<<
 *                 v.svtype = "INV"
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 */
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 *                 v.breakA_precise = 1
 *                 v.breakB_precise = 1
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "3to3"
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 */
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 *                 v.svtype = "INV"
 *                 v.join_type = "3to3"             # <<<<<<<<<<<<<<
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 *             else:  # Guess using pos only
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 *             # Break right
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 *                 v.breakB = v.endB
 */
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 *                 v.breakB = v.posB             # <<<<<<<<<<<<<<
 *                 v.svtype = "INV"
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 */
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 *                 v.breakA = v.posA
 *                 v.breakB = v.posB
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 if v.strandA == 5:
 *                     v.join_type = "5to5"
 */
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 */
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 * 
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 */
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 */
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 *                 else:
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 */
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 *                 if v.left_clipA:             # <<<<<<<<<<<<<<
 *                     v.breakA_precise = 1
 *                 v.breakB = v.posB
 */
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 *                 if v.left_clipA:
 *                     v.breakA_precise = 1             # <<<<<<<<<<<<<<
 *                 v.breakB = v.posB
 *                 if v.left_clipB:
 */
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 *                 if v.left_clipA:             # <<<<<<<<<<<<<<
 *                     v.breakA_precise = 1
 *                 v.breakB = v.posB
 */
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 *                     v.breakA_precise = 1
 *                 v.breakB = v.posB             # <<<<<<<<<<<<<<
 *                 if v.left_clipB:
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 */
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 *                 v.breakB = v.posB
 *                 if v.left_clipB:             # <<<<<<<<<<<<<<
 *                     v.breakB_precise = 1
 *                 v.svtype = "INV"
 */
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 *                 if v.left_clipB:
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 *                 v.svtype = "INV"
 *                 v.join_type = "5to5"
 */
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 *                     v.breakA_precise = 1
 *                 v.breakB = v.posB
 *                 if v.left_clipB:             # <<<<<<<<<<<<<<
 *                     v.breakB_precise = 1
 *                 v.svtype = "INV"
 */
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 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "5to5"
 * 
 */
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        __Pyx_GOTREF(__pyx_v_v->svtype);
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 *                 v.svtype = "INV"
 *                 v.join_type = "5to5"             # <<<<<<<<<<<<<<
 * 
 *             elif not v.left_clipA and not v.left_clipB:
 */
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 *                     v.join_type = "5to5"
 * 
 *             elif not v.right_clipA and not v.right_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakA = v.posA
 *                 if v.left_clipA:
 */
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 *                 v.join_type = "5to5"
 * 
 *             elif not v.left_clipA and not v.left_clipB:             # <<<<<<<<<<<<<<
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 *                 if v.right_clipA:
 */
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 * 
 *             elif not v.left_clipA and not v.left_clipB:
 *                 v.breakA = v.endA             # <<<<<<<<<<<<<<
 *                 if v.right_clipA:
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 */
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 *             elif not v.left_clipA and not v.left_clipB:
 *                 v.breakA = v.endA
 *                 if v.right_clipA:             # <<<<<<<<<<<<<<
 *                     v.breakA_precise = 1
 *                 v.breakB = v.endB
 */
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 *                 v.breakA = v.endA
 *                 if v.right_clipA:
 *                     v.breakA_precise = 1             # <<<<<<<<<<<<<<
 *                 v.breakB = v.endB
 *                 if v.right_clipB:
 */
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 *             elif not v.left_clipA and not v.left_clipB:
 *                 v.breakA = v.endA
 *                 if v.right_clipA:             # <<<<<<<<<<<<<<
 *                     v.breakA_precise = 1
 *                 v.breakB = v.endB
 */
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 *                 if v.right_clipA:
 *                     v.breakA_precise = 1
 *                 v.breakB = v.endB             # <<<<<<<<<<<<<<
 *                 if v.right_clipB:
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 */
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 *                     v.breakA_precise = 1
 *                 v.breakB = v.endB
 *                 if v.right_clipB:             # <<<<<<<<<<<<<<
 *                     v.breakB_precise = 1
 *                 v.svtype = "INV"
 */
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 *                 v.breakB = v.endB
 *                 if v.right_clipB:
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 *                 v.svtype = "INV"
 *                 v.join_type = "3to3"
 */
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 *                 v.breakB = v.endB
 *                 if v.right_clipB:             # <<<<<<<<<<<<<<
 *                     v.breakB_precise = 1
 *                 v.svtype = "INV"
 */
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 *                 if v.right_clipB:
 *                     v.breakB_precise = 1
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "3to3"
 * 
 */
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 *                     v.breakB_precise = 1
 *                 v.svtype = "INV"
 *                 v.join_type = "3to3"             # <<<<<<<<<<<<<<
 * 
 *             elif v.right_clipA and v.left_clipB:
 */
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        __Pyx_GIVEREF(__pyx_kp_u_3to3);
        __Pyx_GOTREF(__pyx_v_v->join_type);
        __Pyx_DECREF(__pyx_v_v->join_type);
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 *                 v.join_type = "5to5"
 * 
 *             elif not v.left_clipA and not v.left_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakA = v.endA
 *                 if v.right_clipA:
 */
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 *                 v.join_type = "3to3"
 * 
 *             elif v.right_clipA and v.left_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakA = v.endA
 *                 v.breakA_precise = 1
 */
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 * 
 *             elif v.right_clipA and v.left_clipB:
 *                 v.breakA = v.endA             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 *                 v.breakB = v.posB
 */
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 *             elif v.right_clipA and v.left_clipB:
 *                 v.breakA = v.endA
 *                 v.breakA_precise = 1             # <<<<<<<<<<<<<<
 *                 v.breakB = v.posB
 *                 v.breakB_precise = 1
 */
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 *                 v.breakA_precise = 1
 *                 v.breakB = v.posB             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
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 */
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 *                 v.breakB = v.posB
 *                 v.breakB_precise = 1             # <<<<<<<<<<<<<<
 *                 # v.svtype = "INV:DUP"
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 */
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 *                 v.breakB_precise = 1
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 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
 *                 v.join_type = "5to3"
 * 
 */
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 *                 v.join_type = "5to3"             # <<<<<<<<<<<<<<
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 */
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 * 
 *             elif v.right_clipA and v.left_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakA = v.endA
 *                 v.breakA_precise = 1
 */
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 * 
 *             else:
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 *                 v.breakA_precise = 1
 *                 v.breakB = v.endB
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 *                 v.breakA_precise = 1             # <<<<<<<<<<<<<<
 *                 v.breakB = v.endB
 *                 v.breakB_precise = 1
 */
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 *                 v.breakA = v.posA
 *                 v.breakA_precise = 1
 *                 v.breakB = v.endB             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 *                 v.svtype = "INV"
 */
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 *                 v.breakA_precise = 1
 *                 v.breakB = v.endB
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 *                 v.svtype = "INV"
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 */
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 *                 v.breakB = v.endB
 *                 v.breakB_precise = 1
 *                 v.svtype = "INV"             # <<<<<<<<<<<<<<
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 *                 v.join_type = "3to5"             # <<<<<<<<<<<<<<
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        __Pyx_GIVEREF(__pyx_kp_u_3to5);
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 * 
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 */
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 */
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 * 
 *         if v.strandA == 5 and v.strandB == 3:  # DEL type
 *             v.breakA = v.posA             # <<<<<<<<<<<<<<
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 */
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 */
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 *             v.breakA = v.posA
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 * 
 *             v.breakB = v.endB
 */
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 *         if v.strandA == 5 and v.strandB == 3:  # DEL type
 *             v.breakA = v.posA
 *             if v.left_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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 *                 v.breakA_precise = 1
 * 
 *             v.breakB = v.endB             # <<<<<<<<<<<<<<
 *             if v.right_clipB:
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 */
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 * 
 *             v.breakB = v.endB
 *             if v.right_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 *             if v.right_clipB:
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 * 
 *             v.svtype = "INS"
 */
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 * 
 *             v.breakB = v.endB
 *             if v.right_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 *                 v.breakB_precise = 1
 * 
 *             v.svtype = "INS"             # <<<<<<<<<<<<<<
 *             v.join_type = "3to5"
 * 
 */
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 * 
 *             v.svtype = "INS"
 *             v.join_type = "3to5"             # <<<<<<<<<<<<<<
 * 
 *         elif v.strandA == 3 and v.strandB == 5:  # DUP type
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 * 
 *         if v.strandA == 5 and v.strandB == 3:  # DEL type             # <<<<<<<<<<<<<<
 *             v.breakA = v.posA
 *             if v.left_clipA:
 */
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    /* "dysgu/sv_category.pyx":654
 *             v.join_type = "3to5"
 * 
 *         elif v.strandA == 3 and v.strandB == 5:  # DUP type             # <<<<<<<<<<<<<<
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 * 
 *         elif v.strandA == 3 and v.strandB == 5:  # DUP type
 *             v.breakA = v.endA             # <<<<<<<<<<<<<<
 *             if v.right_clipA:
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 */
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 *             v.breakA = v.endA
 *             if v.right_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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        /* "dysgu/sv_category.pyx":657
 *             v.breakA = v.endA
 *             if v.right_clipA:
 *                 v.breakA_precise = 1             # <<<<<<<<<<<<<<
 * 
 *             v.breakB = v.posB
 */
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 *         elif v.strandA == 3 and v.strandB == 5:  # DUP type
 *             v.breakA = v.endA
 *             if v.right_clipA:             # <<<<<<<<<<<<<<
 *                 v.breakA_precise = 1
 * 
 */
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      /* "dysgu/sv_category.pyx":659
 *                 v.breakA_precise = 1
 * 
 *             v.breakB = v.posB             # <<<<<<<<<<<<<<
 *             if v.left_clipB:
 *                 v.breakB_precise = 1
 */
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      /* "dysgu/sv_category.pyx":660
 * 
 *             v.breakB = v.posB
 *             if v.left_clipB:             # <<<<<<<<<<<<<<
 *                 v.breakB_precise = 1
 * 
 */
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 */
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}

static void __pyx_tp_dealloc_5dysgu_11sv_category_AlignmentItem(PyObject *o) {
  struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *p = (struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->svtype);
  Py_CLEAR(p->join_type);
  Py_CLEAR(p->read_a);
  Py_CLEAR(p->read_b);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_5dysgu_11sv_category_AlignmentItem(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *p = (struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *)o;
  if (p->read_a) {
    e = (*v)(p->read_a, a); if (e) return e;
  }
  if (p->read_b) {
    e = (*v)(p->read_b, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_5dysgu_11sv_category_AlignmentItem(PyObject *o) {
  PyObject* tmp;
  struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *p = (struct __pyx_obj_5dysgu_11sv_category_AlignmentItem *)o;
  tmp = ((PyObject*)p->read_a);
  p->read_a = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->read_b);
  p->read_b = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_chrA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4chrA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_chrA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4chrA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_chrB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4chrB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_chrB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4chrB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_priA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4priA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_priA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4priA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_priB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4priB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_priB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4priB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_rA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_2rA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_rA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_2rA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_rB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_2rB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_rB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_2rB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_posA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4posA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_posA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4posA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_endA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4endA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_endA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4endA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_posB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4posB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_posB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4posB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_endB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4endB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_endB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_4endB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_strandA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_7strandA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_strandA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_7strandA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_strandB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_7strandB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_strandB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_7strandB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_left_clipA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_10left_clipA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_left_clipA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_10left_clipA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_right_clipA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_11right_clipA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_right_clipA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_11right_clipA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_left_clipB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_10left_clipB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_left_clipB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_10left_clipB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_right_clipB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_11right_clipB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_right_clipB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_11right_clipB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_breakA_precise(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_14breakA_precise_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_breakA_precise(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_14breakA_precise_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_breakB_precise(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_14breakB_precise_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_breakB_precise(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_14breakB_precise_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_breakA(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6breakA_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_breakA(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6breakA_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_breakB(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6breakB_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_breakB(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6breakB_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_a_qstart(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_8a_qstart_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_a_qstart(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_8a_qstart_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_a_qend(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6a_qend_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_a_qend(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6a_qend_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_b_qstart(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_8b_qstart_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_b_qstart(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_8b_qstart_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_b_qend(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6b_qend_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_b_qend(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6b_qend_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_a_len(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_5a_len_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_a_len(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_5a_len_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_b_len(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_5b_len_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_b_len(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_5b_len_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_query_gap(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_9query_gap_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_query_gap(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_9query_gap_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_read_overlaps_mate(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_18read_overlaps_mate_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_read_overlaps_mate(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_18read_overlaps_mate_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_size_inferred(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_13size_inferred_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_size_inferred(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_13size_inferred_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_query_overlap(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_13query_overlap_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_query_overlap(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_13query_overlap_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_inferred_sv_len(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_15inferred_sv_len_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_inferred_sv_len(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_15inferred_sv_len_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_svtype(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6svtype_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_svtype(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6svtype_3__set__(o, v);
  }
  else {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_6svtype_5__del__(o);
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_join_type(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_9join_type_1__get__(o);
}

static int __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_join_type(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_9join_type_3__set__(o, v);
  }
  else {
    return __pyx_pw_5dysgu_11sv_category_13AlignmentItem_9join_type_5__del__(o);
  }
}

static PyObject *__pyx_getprop_5dysgu_11sv_category_13AlignmentItem_read_a(PyObject *o, CYTHON_UNUSED void *x) {
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  {(char *)"read_a", __pyx_getprop_5dysgu_11sv_category_13AlignmentItem_read_a, __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_read_a, (char *)0, 0},
  {(char *)"read_b", __pyx_getprop_5dysgu_11sv_category_13AlignmentItem_read_b, __pyx_setprop_5dysgu_11sv_category_13AlignmentItem_read_b, (char *)0, 0},
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#if PY_MAJOR_VERSION < 3
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    "2021222324252627"
    "3031323334353637"
    "4041424344454647"
    "5051525354555657"
    "6061626364656667"
    "7071727374757677"
};
static const char DIGITS_HEX[2*16+1] = {
    "0123456789abcdef"
    "0123456789ABCDEF"
};

/* BuildPyUnicode */
static PyObject* __Pyx_PyUnicode_BuildFromAscii(Py_ssize_t ulength, char* chars, int clength,
                                                int prepend_sign, char padding_char) {
    PyObject *uval;
    Py_ssize_t uoffset = ulength - clength;
#if CYTHON_USE_UNICODE_INTERNALS
    Py_ssize_t i;
#if CYTHON_PEP393_ENABLED
    void *udata;
    uval = PyUnicode_New(ulength, 127);
    if (unlikely(!uval)) return NULL;
    udata = PyUnicode_DATA(uval);
#else
    Py_UNICODE *udata;
    uval = PyUnicode_FromUnicode(NULL, ulength);
    if (unlikely(!uval)) return NULL;
    udata = PyUnicode_AS_UNICODE(uval);
#endif
    if (uoffset > 0) {
        i = 0;
        if (prepend_sign) {
            __Pyx_PyUnicode_WRITE(PyUnicode_1BYTE_KIND, udata, 0, '-');
            i++;
        }
        for (; i < uoffset; i++) {
            __Pyx_PyUnicode_WRITE(PyUnicode_1BYTE_KIND, udata, i, padding_char);
        }
    }
    for (i=0; i < clength; i++) {
        __Pyx_PyUnicode_WRITE(PyUnicode_1BYTE_KIND, udata, uoffset+i, chars[i]);
    }
#else
    {
        PyObject *sign = NULL, *padding = NULL;
        uval = NULL;
        if (uoffset > 0) {
            prepend_sign = !!prepend_sign;
            if (uoffset > prepend_sign) {
                padding = PyUnicode_FromOrdinal(padding_char);
                if (likely(padding) && uoffset > prepend_sign + 1) {
                    PyObject *tmp;
                    PyObject *repeat = PyInt_FromSsize_t(uoffset - prepend_sign);
                    if (unlikely(!repeat)) goto done_or_error;
                    tmp = PyNumber_Multiply(padding, repeat);
                    Py_DECREF(repeat);
                    Py_DECREF(padding);
                    padding = tmp;
                }
                if (unlikely(!padding)) goto done_or_error;
            }
            if (prepend_sign) {
                sign = PyUnicode_FromOrdinal('-');
                if (unlikely(!sign)) goto done_or_error;
            }
        }
        uval = PyUnicode_DecodeASCII(chars, clength, NULL);
        if (likely(uval) && padding) {
            PyObject *tmp = PyNumber_Add(padding, uval);
            Py_DECREF(uval);
            uval = tmp;
        }
        if (likely(uval) && sign) {
            PyObject *tmp = PyNumber_Add(sign, uval);
            Py_DECREF(uval);
            uval = tmp;
        }
done_or_error:
        Py_XDECREF(padding);
        Py_XDECREF(sign);
    }
#endif
    return uval;
}

/* CIntToPyUnicode */
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_From_int(int value, Py_ssize_t width, char padding_char, char format_char) {
    char digits[sizeof(int)*3+2];
    char *dpos, *end = digits + sizeof(int)*3+2;
    const char *hex_digits = DIGITS_HEX;
    Py_ssize_t length, ulength;
    int prepend_sign, last_one_off;
    int remaining;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int neg_one = (int) -1, const_zero = (int) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (format_char == 'X') {
        hex_digits += 16;
        format_char = 'x';
    }
    remaining = value;
    last_one_off = 0;
    dpos = end;
    do {
        int digit_pos;
        switch (format_char) {
        case 'o':
            digit_pos = abs((int)(remaining % (8*8)));
            remaining = (int) (remaining / (8*8));
            dpos -= 2;
            memcpy(dpos, DIGIT_PAIRS_8 + digit_pos * 2, 2);
            last_one_off = (digit_pos < 8);
            break;
        case 'd':
            digit_pos = abs((int)(remaining % (10*10)));
            remaining = (int) (remaining / (10*10));
            dpos -= 2;
            memcpy(dpos, DIGIT_PAIRS_10 + digit_pos * 2, 2);
            last_one_off = (digit_pos < 10);
            break;
        case 'x':
            *(--dpos) = hex_digits[abs((int)(remaining % 16))];
            remaining = (int) (remaining / 16);
            break;
        default:
            assert(0);
            break;
        }
    } while (unlikely(remaining != 0));
    if (last_one_off) {
        assert(*dpos == '0');
        dpos++;
    }
    length = end - dpos;
    ulength = length;
    prepend_sign = 0;
    if (!is_unsigned && value <= neg_one) {
        if (padding_char == ' ' || width <= length + 1) {
            *(--dpos) = '-';
            ++length;
        } else {
            prepend_sign = 1;
        }
        ++ulength;
    }
    if (width > ulength) {
        ulength = width;
    }
    if (ulength == 1) {
        return PyUnicode_FromOrdinal(*dpos);
    }
    return __Pyx_PyUnicode_BuildFromAscii(ulength, dpos, (int) length, prepend_sign, padding_char);
}

/* JoinPyUnicode */
static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
                                      CYTHON_UNUSED Py_UCS4 max_char) {
#if CYTHON_USE_UNICODE_INTERNALS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    PyObject *result_uval;
    int result_ukind;
    Py_ssize_t i, char_pos;
    void *result_udata;
#if CYTHON_PEP393_ENABLED
    result_uval = PyUnicode_New(result_ulength, max_char);
    if (unlikely(!result_uval)) return NULL;
    result_ukind = (max_char <= 255) ? PyUnicode_1BYTE_KIND : (max_char <= 65535) ? PyUnicode_2BYTE_KIND : PyUnicode_4BYTE_KIND;
    result_udata = PyUnicode_DATA(result_uval);
#else
    result_uval = PyUnicode_FromUnicode(NULL, result_ulength);
    if (unlikely(!result_uval)) return NULL;
    result_ukind = sizeof(Py_UNICODE);
    result_udata = PyUnicode_AS_UNICODE(result_uval);
#endif
    char_pos = 0;
    for (i=0; i < value_count; i++) {
        int ukind;
        Py_ssize_t ulength;
        void *udata;
        PyObject *uval = PyTuple_GET_ITEM(value_tuple, i);
        if (unlikely(__Pyx_PyUnicode_READY(uval)))
            goto bad;
        ulength = __Pyx_PyUnicode_GET_LENGTH(uval);
        if (unlikely(!ulength))
            continue;
        if (unlikely(char_pos + ulength < 0))
            goto overflow;
        ukind = __Pyx_PyUnicode_KIND(uval);
        udata = __Pyx_PyUnicode_DATA(uval);
        if (!CYTHON_PEP393_ENABLED || ukind == result_ukind) {
            memcpy((char *)result_udata + char_pos * result_ukind, udata, (size_t) (ulength * result_ukind));
        } else {
            #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030300F0 || defined(_PyUnicode_FastCopyCharacters)
            _PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength);
            #else
            Py_ssize_t j;
            for (j=0; j < ulength; j++) {
                Py_UCS4 uchar = __Pyx_PyUnicode_READ(ukind, udata, j);
                __Pyx_PyUnicode_WRITE(result_ukind, result_udata, char_pos+j, uchar);
            }
            #endif
        }
        char_pos += ulength;
    }
    return result_uval;
overflow:
    PyErr_SetString(PyExc_OverflowError, "join() result is too long for a Python string");
bad:
    Py_DECREF(result_uval);
    return NULL;
#else
    result_ulength++;
    value_count++;
    return PyUnicode_Join(__pyx_empty_unicode, value_tuple);
#endif
}

/* WriteUnraisableException */
static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
                                  CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename,
                                  int full_traceback, CYTHON_UNUSED int nogil) {
    PyObject *old_exc, *old_val, *old_tb;
    PyObject *ctx;
    __Pyx_PyThreadState_declare
#ifdef WITH_THREAD
    PyGILState_STATE state;
    if (nogil)
        state = PyGILState_Ensure();
    else state = (PyGILState_STATE)0;
#endif
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
    if (full_traceback) {
        Py_XINCREF(old_exc);
        Py_XINCREF(old_val);
        Py_XINCREF(old_tb);
        __Pyx_ErrRestore(old_exc, old_val, old_tb);
        PyErr_PrintEx(1);
    }
    #if PY_MAJOR_VERSION < 3
    ctx = PyString_FromString(name);
    #else
    ctx = PyUnicode_FromString(name);
    #endif
    __Pyx_ErrRestore(old_exc, old_val, old_tb);
    if (!ctx) {
        PyErr_WriteUnraisable(Py_None);
    } else {
        PyErr_WriteUnraisable(ctx);
        Py_DECREF(ctx);
    }
#ifdef WITH_THREAD
    if (nogil)
        PyGILState_Release(state);
#endif
}

/* GetTopmostException */
#if CYTHON_USE_EXC_INFO_STACK
static _PyErr_StackItem *
__Pyx_PyErr_GetTopmostException(PyThreadState *tstate)
{
    _PyErr_StackItem *exc_info = tstate->exc_info;
    while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) &&
           exc_info->previous_item != NULL)
    {
        exc_info = exc_info->previous_item;
    }
    return exc_info;
}
#endif

/* SaveResetException */
#if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
    *type = exc_info->exc_type;
    *value = exc_info->exc_value;
    *tb = exc_info->exc_traceback;
    #else
    *type = tstate->exc_type;
    *value = tstate->exc_value;
    *tb = tstate->exc_traceback;
    #endif
    Py_XINCREF(*type);
    Py_XINCREF(*value);
    Py_XINCREF(*tb);
}
static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = tstate->exc_info;
    tmp_type = exc_info->exc_type;
    tmp_value = exc_info->exc_value;
    tmp_tb = exc_info->exc_traceback;
    exc_info->exc_type = type;
    exc_info->exc_value = value;
    exc_info->exc_traceback = tb;
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = type;
    tstate->exc_value = value;
    tstate->exc_traceback = tb;
    #endif
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
}
#endif

/* PyErrExceptionMatches */
#if CYTHON_FAST_THREAD_STATE
static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
    Py_ssize_t i, n;
    n = PyTuple_GET_SIZE(tuple);
#if PY_MAJOR_VERSION >= 3
    for (i=0; i<n; i++) {
        if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
    }
#endif
    for (i=0; i<n; i++) {
        if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1;
    }
    return 0;
}
static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
    PyObject *exc_type = tstate->curexc_type;
    if (exc_type == err) return 1;
    if (unlikely(!exc_type)) return 0;
    if (unlikely(PyTuple_Check(err)))
        return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err);
    return __Pyx_PyErr_GivenExceptionMatches(exc_type, err);
}
#endif

/* GetException */
#if CYTHON_FAST_THREAD_STATE
static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb)
#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
#endif
{
    PyObject *local_type, *local_value, *local_tb;
#if CYTHON_FAST_THREAD_STATE
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    local_type = tstate->curexc_type;
    local_value = tstate->curexc_value;
    local_tb = tstate->curexc_traceback;
    tstate->curexc_type = 0;
    tstate->curexc_value = 0;
    tstate->curexc_traceback = 0;
#else
    PyErr_Fetch(&local_type, &local_value, &local_tb);
#endif
    PyErr_NormalizeException(&local_type, &local_value, &local_tb);
#if CYTHON_FAST_THREAD_STATE
    if (unlikely(tstate->curexc_type))
#else
    if (unlikely(PyErr_Occurred()))
#endif
        goto bad;
    #if PY_MAJOR_VERSION >= 3
    if (local_tb) {
        if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
            goto bad;
    }
    #endif
    Py_XINCREF(local_tb);
    Py_XINCREF(local_type);
    Py_XINCREF(local_value);
    *type = local_type;
    *value = local_value;
    *tb = local_tb;
#if CYTHON_FAST_THREAD_STATE
    #if CYTHON_USE_EXC_INFO_STACK
    {
        _PyErr_StackItem *exc_info = tstate->exc_info;
        tmp_type = exc_info->exc_type;
        tmp_value = exc_info->exc_value;
        tmp_tb = exc_info->exc_traceback;
        exc_info->exc_type = local_type;
        exc_info->exc_value = local_value;
        exc_info->exc_traceback = local_tb;
    }
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = local_type;
    tstate->exc_value = local_value;
    tstate->exc_traceback = local_tb;
    #endif
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
#else
    PyErr_SetExcInfo(local_type, local_value, local_tb);
#endif
    return 0;
bad:
    *type = 0;
    *value = 0;
    *tb = 0;
    Py_XDECREF(local_type);
    Py_XDECREF(local_value);
    Py_XDECREF(local_tb);
    return -1;
}

/* PyObject_GenericGetAttrNoDict */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) {
    PyErr_Format(PyExc_AttributeError,
#if PY_MAJOR_VERSION >= 3
                 "'%.50s' object has no attribute '%U'",
                 tp->tp_name, attr_name);
#else
                 "'%.50s' object has no attribute '%.400s'",
                 tp->tp_name, PyString_AS_STRING(attr_name));
#endif
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) {
    PyObject *descr;
    PyTypeObject *tp = Py_TYPE(obj);
    if (unlikely(!PyString_Check(attr_name))) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    assert(!tp->tp_dictoffset);
    descr = _PyType_Lookup(tp, attr_name);
    if (unlikely(!descr)) {
        return __Pyx_RaiseGenericGetAttributeError(tp, attr_name);
    }
    Py_INCREF(descr);
    #if PY_MAJOR_VERSION < 3
    if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS)))
    #endif
    {
        descrgetfunc f = Py_TYPE(descr)->tp_descr_get;
        if (unlikely(f)) {
            PyObject *res = f(descr, obj, (PyObject *)tp);
            Py_DECREF(descr);
            return res;
        }
    }
    return descr;
}
#endif

/* PyObject_GenericGetAttr */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) {
    if (unlikely(Py_TYPE(obj)->tp_dictoffset)) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name);
}
#endif

/* PyObjectGetAttrStrNoError */
static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
        __Pyx_PyErr_Clear();
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) {
    PyObject *result;
#if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1
    PyTypeObject* tp = Py_TYPE(obj);
    if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) {
        return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1);
    }
#endif
    result = __Pyx_PyObject_GetAttrStr(obj, attr_name);
    if (unlikely(!result)) {
        __Pyx_PyObject_GetAttrStr_ClearAttributeError();
    }
    return result;
}

/* SetupReduce */
static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
  int ret;
  PyObject *name_attr;
  name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name);
  if (likely(name_attr)) {
      ret = PyObject_RichCompareBool(name_attr, name, Py_EQ);
  } else {
      ret = -1;
  }
  if (unlikely(ret < 0)) {
      PyErr_Clear();
      ret = 0;
  }
  Py_XDECREF(name_attr);
  return ret;
}
static int __Pyx_setup_reduce(PyObject* type_obj) {
    int ret = 0;
    PyObject *object_reduce = NULL;
    PyObject *object_getstate = NULL;
    PyObject *object_reduce_ex = NULL;
    PyObject *reduce = NULL;
    PyObject *reduce_ex = NULL;
    PyObject *reduce_cython = NULL;
    PyObject *setstate = NULL;
    PyObject *setstate_cython = NULL;
    PyObject *getstate = NULL;
#if CYTHON_USE_PYTYPE_LOOKUP
    getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate);
#else
    getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate);
    if (!getstate && PyErr_Occurred()) {
        goto __PYX_BAD;
    }
#endif
    if (getstate) {
#if CYTHON_USE_PYTYPE_LOOKUP
        object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate);
#else
        object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate);
        if (!object_getstate && PyErr_Occurred()) {
            goto __PYX_BAD;
        }
#endif
        if (object_getstate != getstate) {
            goto __PYX_GOOD;
        }
    }
#if CYTHON_USE_PYTYPE_LOOKUP
    object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
#else
    object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
#endif
    reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD;
    if (reduce_ex == object_reduce_ex) {
#if CYTHON_USE_PYTYPE_LOOKUP
        object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
#else
        object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
#endif
        reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD;
        if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
            reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython);
            if (likely(reduce_cython)) {
                ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
            } else if (reduce == object_reduce || PyErr_Occurred()) {
                goto __PYX_BAD;
            }
            setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate);
            if (!setstate) PyErr_Clear();
            if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
                setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython);
                if (likely(setstate_cython)) {
                    ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                    ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                } else if (!setstate || PyErr_Occurred()) {
                    goto __PYX_BAD;
                }
            }
            PyType_Modified((PyTypeObject*)type_obj);
        }
    }
    goto __PYX_GOOD;
__PYX_BAD:
    if (!PyErr_Occurred())
        PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name);
    ret = -1;
__PYX_GOOD:
#if !CYTHON_USE_PYTYPE_LOOKUP
    Py_XDECREF(object_reduce);
    Py_XDECREF(object_reduce_ex);
    Py_XDECREF(object_getstate);
    Py_XDECREF(getstate);
#endif
    Py_XDECREF(reduce);
    Py_XDECREF(reduce_ex);
    Py_XDECREF(reduce_cython);
    Py_XDECREF(setstate);
    Py_XDECREF(setstate_cython);
    return ret;
}

/* TypeImport */
#ifndef __PYX_HAVE_RT_ImportType_0_29_35
#define __PYX_HAVE_RT_ImportType_0_29_35
static PyTypeObject *__Pyx_ImportType_0_29_35(PyObject *module, const char *module_name, const char *class_name,
    size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_0_29_35 check_size)
{
    PyObject *result = 0;
    char warning[200];
    Py_ssize_t basicsize;
    Py_ssize_t itemsize;
#ifdef Py_LIMITED_API
    PyObject *py_basicsize;
    PyObject *py_itemsize;
#endif
    result = PyObject_GetAttrString(module, class_name);
    if (!result)
        goto bad;
    if (!PyType_Check(result)) {
        PyErr_Format(PyExc_TypeError,
            "%.200s.%.200s is not a type object",
            module_name, class_name);
        goto bad;
    }
#ifndef Py_LIMITED_API
    basicsize = ((PyTypeObject *)result)->tp_basicsize;
    itemsize = ((PyTypeObject *)result)->tp_itemsize;
#else
    py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
    if (!py_basicsize)
        goto bad;
    basicsize = PyLong_AsSsize_t(py_basicsize);
    Py_DECREF(py_basicsize);
    py_basicsize = 0;
    if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
        goto bad;
    py_itemsize = PyObject_GetAttrString(result, "__itemsize__");
    if (!py_itemsize)
        goto bad;
    itemsize = PyLong_AsSsize_t(py_itemsize);
    Py_DECREF(py_itemsize);
    py_itemsize = 0;
    if (itemsize == (Py_ssize_t)-1 && PyErr_Occurred())
        goto bad;
#endif
    if (itemsize) {
        if (size % alignment) {
            alignment = size % alignment;
        }
        if (itemsize < (Py_ssize_t)alignment)
            itemsize = (Py_ssize_t)alignment;
    }
    if ((size_t)(basicsize + itemsize) < size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    if (check_size == __Pyx_ImportType_CheckSize_Error_0_29_35 && (size_t)basicsize != size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    else if (check_size == __Pyx_ImportType_CheckSize_Warn_0_29_35 && (size_t)basicsize > size) {
        PyOS_snprintf(warning, sizeof(warning),
            "%s.%s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
    }
    return (PyTypeObject *)result;
bad:
    Py_XDECREF(result);
    return NULL;
}
#endif

/* GetVTable */
static void* __Pyx_GetVtable(PyObject *dict) {
    void* ptr;
    PyObject *ob = PyObject_GetItem(dict, __pyx_n_s_pyx_vtable);
    if (!ob)
        goto bad;
#if PY_VERSION_HEX >= 0x02070000
    ptr = PyCapsule_GetPointer(ob, 0);
#else
    ptr = PyCObject_AsVoidPtr(ob);
#endif
    if (!ptr && !PyErr_Occurred())
        PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type");
    Py_DECREF(ob);
    return ptr;
bad:
    Py_XDECREF(ob);
    return NULL;
}

/* Import */
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
    PyObject *empty_list = 0;
    PyObject *module = 0;
    PyObject *global_dict = 0;
    PyObject *empty_dict = 0;
    PyObject *list;
    #if PY_MAJOR_VERSION < 3
    PyObject *py_import;
    py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
    if (!py_import)
        goto bad;
    #endif
    if (from_list)
        list = from_list;
    else {
        empty_list = PyList_New(0);
        if (!empty_list)
            goto bad;
        list = empty_list;
    }
    global_dict = PyModule_GetDict(__pyx_m);
    if (!global_dict)
        goto bad;
    empty_dict = PyDict_New();
    if (!empty_dict)
        goto bad;
    {
        #if PY_MAJOR_VERSION >= 3
        if (level == -1) {
            if ((1) && (strchr(__Pyx_MODULE_NAME, '.'))) {
                module = PyImport_ImportModuleLevelObject(
                    name, global_dict, empty_dict, list, 1);
                if (!module) {
                    if (!PyErr_ExceptionMatches(PyExc_ImportError))
                        goto bad;
                    PyErr_Clear();
                }
            }
            level = 0;
        }
        #endif
        if (!module) {
            #if PY_MAJOR_VERSION < 3
            PyObject *py_level = PyInt_FromLong(level);
            if (!py_level)
                goto bad;
            module = PyObject_CallFunctionObjArgs(py_import,
                name, global_dict, empty_dict, list, py_level, (PyObject *)NULL);
            Py_DECREF(py_level);
            #else
            module = PyImport_ImportModuleLevelObject(
                name, global_dict, empty_dict, list, level);
            #endif
        }
    }
bad:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(py_import);
    #endif
    Py_XDECREF(empty_list);
    Py_XDECREF(empty_dict);
    return module;
}

/* ImportFrom */
static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
    PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
    if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
        PyErr_Format(PyExc_ImportError,
        #if PY_MAJOR_VERSION < 3
            "cannot import name %.230s", PyString_AS_STRING(name));
        #else
            "cannot import name %S", name);
        #endif
    }
    return value;
}

/* PyDictVersioning */
#if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) {
    PyObject *dict = Py_TYPE(obj)->tp_dict;
    return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
}
static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) {
    PyObject **dictptr = NULL;
    Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset;
    if (offset) {
#if CYTHON_COMPILING_IN_CPYTHON
        dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj);
#else
        dictptr = _PyObject_GetDictPtr(obj);
#endif
    }
    return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
}
static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) {
    PyObject *dict = Py_TYPE(obj)->tp_dict;
    if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
        return 0;
    return obj_dict_version == __Pyx_get_object_dict_version(obj);
}
#endif

/* CLineInTraceback */
#ifndef CYTHON_CLINE_IN_TRACEBACK
static int __Pyx_CLineForTraceback(CYTHON_UNUSED PyThreadState *tstate, int c_line) {
    PyObject *use_cline;
    PyObject *ptype, *pvalue, *ptraceback;
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject **cython_runtime_dict;
#endif
    if (unlikely(!__pyx_cython_runtime)) {
        return c_line;
    }
    __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
#if CYTHON_COMPILING_IN_CPYTHON
    cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
    if (likely(cython_runtime_dict)) {
        __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
            use_cline, *cython_runtime_dict,
            __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
    } else
#endif
    {
      PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
      if (use_cline_obj) {
        use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
        Py_DECREF(use_cline_obj);
      } else {
        PyErr_Clear();
        use_cline = NULL;
      }
    }
    if (!use_cline) {
        c_line = 0;
        (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
    }
    else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
        c_line = 0;
    }
    __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
    return c_line;
}
#endif

/* CodeObjectCache */
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
    int start = 0, mid = 0, end = count - 1;
    if (end >= 0 && code_line > entries[end].code_line) {
        return count;
    }
    while (start < end) {
        mid = start + (end - start) / 2;
        if (code_line < entries[mid].code_line) {
            end = mid;
        } else if (code_line > entries[mid].code_line) {
             start = mid + 1;
        } else {
            return mid;
        }
    }
    if (code_line <= entries[mid].code_line) {
        return mid;
    } else {
        return mid + 1;
    }
}
static PyCodeObject *__pyx_find_code_object(int code_line) {
    PyCodeObject* code_object;
    int pos;
    if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
        return NULL;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
        return NULL;
    }
    code_object = __pyx_code_cache.entries[pos].code_object;
    Py_INCREF(code_object);
    return code_object;
}
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
    int pos, i;
    __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
    if (unlikely(!code_line)) {
        return;
    }
    if (unlikely(!entries)) {
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
        if (likely(entries)) {
            __pyx_code_cache.entries = entries;
            __pyx_code_cache.max_count = 64;
            __pyx_code_cache.count = 1;
            entries[0].code_line = code_line;
            entries[0].code_object = code_object;
            Py_INCREF(code_object);
        }
        return;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
        PyCodeObject* tmp = entries[pos].code_object;
        entries[pos].code_object = code_object;
        Py_DECREF(tmp);
        return;
    }
    if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
        int new_max = __pyx_code_cache.max_count + 64;
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
            __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry));
        if (unlikely(!entries)) {
            return;
        }
        __pyx_code_cache.entries = entries;
        __pyx_code_cache.max_count = new_max;
    }
    for (i=__pyx_code_cache.count; i>pos; i--) {
        entries[i] = entries[i-1];
    }
    entries[pos].code_line = code_line;
    entries[pos].code_object = code_object;
    __pyx_code_cache.count++;
    Py_INCREF(code_object);
}

/* AddTraceback */
#include "compile.h"
#include "frameobject.h"
#include "traceback.h"
#if PY_VERSION_HEX >= 0x030b00a6
  #ifndef Py_BUILD_CORE
    #define Py_BUILD_CORE 1
  #endif
  #include "internal/pycore_frame.h"
#endif
static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
            const char *funcname, int c_line,
            int py_line, const char *filename) {
    PyCodeObject *py_code = NULL;
    PyObject *py_funcname = NULL;
    #if PY_MAJOR_VERSION < 3
    PyObject *py_srcfile = NULL;
    py_srcfile = PyString_FromString(filename);
    if (!py_srcfile) goto bad;
    #endif
    if (c_line) {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        if (!py_funcname) goto bad;
        #else
        py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        if (!py_funcname) goto bad;
        funcname = PyUnicode_AsUTF8(py_funcname);
        if (!funcname) goto bad;
        #endif
    }
    else {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromString(funcname);
        if (!py_funcname) goto bad;
        #endif
    }
    #if PY_MAJOR_VERSION < 3
    py_code = __Pyx_PyCode_New(
        0,
        0,
        0,
        0,
        0,
        __pyx_empty_bytes, /*PyObject *code,*/
        __pyx_empty_tuple, /*PyObject *consts,*/
        __pyx_empty_tuple, /*PyObject *names,*/
        __pyx_empty_tuple, /*PyObject *varnames,*/
        __pyx_empty_tuple, /*PyObject *freevars,*/
        __pyx_empty_tuple, /*PyObject *cellvars,*/
        py_srcfile,   /*PyObject *filename,*/
        py_funcname,  /*PyObject *name,*/
        py_line,
        __pyx_empty_bytes  /*PyObject *lnotab*/
    );
    Py_DECREF(py_srcfile);
    #else
    py_code = PyCode_NewEmpty(filename, funcname, py_line);
    #endif
    Py_XDECREF(py_funcname);  // XDECREF since it's only set on Py3 if cline
    return py_code;
bad:
    Py_XDECREF(py_funcname);
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(py_srcfile);
    #endif
    return NULL;
}
static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyFrameObject *py_frame = 0;
    PyThreadState *tstate = __Pyx_PyThreadState_Current;
    PyObject *ptype, *pvalue, *ptraceback;
    if (c_line) {
        c_line = __Pyx_CLineForTraceback(tstate, c_line);
    }
    py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
    if (!py_code) {
        __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
        py_code = __Pyx_CreateCodeObjectForTraceback(
            funcname, c_line, py_line, filename);
        if (!py_code) {
            /* If the code object creation fails, then we should clear the
               fetched exception references and propagate the new exception */
            Py_XDECREF(ptype);
            Py_XDECREF(pvalue);
            Py_XDECREF(ptraceback);
            goto bad;
        }
        __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
        __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
    }
    py_frame = PyFrame_New(
        tstate,            /*PyThreadState *tstate,*/
        py_code,           /*PyCodeObject *code,*/
        __pyx_d,    /*PyObject *globals,*/
        0                  /*PyObject *locals*/
    );
    if (!py_frame) goto bad;
    __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
    PyTraceBack_Here(py_frame);
bad:
    Py_XDECREF(py_code);
    Py_XDECREF(py_frame);
}

/* CIntFromPyVerify */
#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
    {\
        func_type value = func_value;\
        if (sizeof(target_type) < sizeof(func_type)) {\
            if (unlikely(value != (func_type) (target_type) value)) {\
                func_type zero = 0;\
                if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
                    return (target_type) -1;\
                if (is_unsigned && unlikely(value < zero))\
                    goto raise_neg_overflow;\
                else\
                    goto raise_overflow;\
            }\
        }\
        return (target_type) value;\
    }

/* Declarations */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      return ::std::complex< float >(x, y);
    }
  #else
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      return x + y*(__pyx_t_float_complex)_Complex_I;
    }
  #endif
#else
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      __pyx_t_float_complex z;
      z.real = x;
      z.imag = y;
      return z;
    }
#endif

/* Arithmetic */
#if CYTHON_CCOMPLEX
#else
    static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
       return (a.real == b.real) && (a.imag == b.imag);
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real + b.real;
        z.imag = a.imag + b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real - b.real;
        z.imag = a.imag - b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real * b.real - a.imag * b.imag;
        z.imag = a.real * b.imag + a.imag * b.real;
        return z;
    }
    #if 1
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        if (b.imag == 0) {
            return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else if (fabsf(b.real) >= fabsf(b.imag)) {
            if (b.real == 0 && b.imag == 0) {
                return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
            } else {
                float r = b.imag / b.real;
                float s = (float)(1.0) / (b.real + b.imag * r);
                return __pyx_t_float_complex_from_parts(
                    (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
            }
        } else {
            float r = b.real / b.imag;
            float s = (float)(1.0) / (b.imag + b.real * r);
            return __pyx_t_float_complex_from_parts(
                (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
        }
    }
    #else
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        if (b.imag == 0) {
            return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else {
            float denom = b.real * b.real + b.imag * b.imag;
            return __pyx_t_float_complex_from_parts(
                (a.real * b.real + a.imag * b.imag) / denom,
                (a.imag * b.real - a.real * b.imag) / denom);
        }
    }
    #endif
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
        __pyx_t_float_complex z;
        z.real = -a.real;
        z.imag = -a.imag;
        return z;
    }
    static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
       return (a.real == 0) && (a.imag == 0);
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
        __pyx_t_float_complex z;
        z.real =  a.real;
        z.imag = -a.imag;
        return z;
    }
    #if 1
        static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
          #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
            return sqrtf(z.real*z.real + z.imag*z.imag);
          #else
            return hypotf(z.real, z.imag);
          #endif
        }
        static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
            __pyx_t_float_complex z;
            float r, lnr, theta, z_r, z_theta;
            if (b.imag == 0 && b.real == (int)b.real) {
                if (b.real < 0) {
                    float denom = a.real * a.real + a.imag * a.imag;
                    a.real = a.real / denom;
                    a.imag = -a.imag / denom;
                    b.real = -b.real;
                }
                switch ((int)b.real) {
                    case 0:
                        z.real = 1;
                        z.imag = 0;
                        return z;
                    case 1:
                        return a;
                    case 2:
                        return __Pyx_c_prod_float(a, a);
                    case 3:
                        z = __Pyx_c_prod_float(a, a);
                        return __Pyx_c_prod_float(z, a);
                    case 4:
                        z = __Pyx_c_prod_float(a, a);
                        return __Pyx_c_prod_float(z, z);
                }
            }
            if (a.imag == 0) {
                if (a.real == 0) {
                    return a;
                } else if ((b.imag == 0) && (a.real >= 0)) {
                    z.real = powf(a.real, b.real);
                    z.imag = 0;
                    return z;
                } else if (a.real > 0) {
                    r = a.real;
                    theta = 0;
                } else {
                    r = -a.real;
                    theta = atan2f(0.0, -1.0);
                }
            } else {
                r = __Pyx_c_abs_float(a);
                theta = atan2f(a.imag, a.real);
            }
            lnr = logf(r);
            z_r = expf(lnr * b.real - theta * b.imag);
            z_theta = theta * b.real + lnr * b.imag;
            z.real = z_r * cosf(z_theta);
            z.imag = z_r * sinf(z_theta);
            return z;
        }
    #endif
#endif

/* Declarations */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      return ::std::complex< double >(x, y);
    }
  #else
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      return x + y*(__pyx_t_double_complex)_Complex_I;
    }
  #endif
#else
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      __pyx_t_double_complex z;
      z.real = x;
      z.imag = y;
      return z;
    }
#endif

/* Arithmetic */
#if CYTHON_CCOMPLEX
#else
    static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
       return (a.real == b.real) && (a.imag == b.imag);
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real + b.real;
        z.imag = a.imag + b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real - b.real;
        z.imag = a.imag - b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real * b.real - a.imag * b.imag;
        z.imag = a.real * b.imag + a.imag * b.real;
        return z;
    }
    #if 1
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        if (b.imag == 0) {
            return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else if (fabs(b.real) >= fabs(b.imag)) {
            if (b.real == 0 && b.imag == 0) {
                return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
            } else {
                double r = b.imag / b.real;
                double s = (double)(1.0) / (b.real + b.imag * r);
                return __pyx_t_double_complex_from_parts(
                    (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
            }
        } else {
            double r = b.real / b.imag;
            double s = (double)(1.0) / (b.imag + b.real * r);
            return __pyx_t_double_complex_from_parts(
                (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
        }
    }
    #else
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        if (b.imag == 0) {
            return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else {
            double denom = b.real * b.real + b.imag * b.imag;
            return __pyx_t_double_complex_from_parts(
                (a.real * b.real + a.imag * b.imag) / denom,
                (a.imag * b.real - a.real * b.imag) / denom);
        }
    }
    #endif
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
        __pyx_t_double_complex z;
        z.real = -a.real;
        z.imag = -a.imag;
        return z;
    }
    static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
       return (a.real == 0) && (a.imag == 0);
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
        __pyx_t_double_complex z;
        z.real =  a.real;
        z.imag = -a.imag;
        return z;
    }
    #if 1
        static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
          #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
            return sqrt(z.real*z.real + z.imag*z.imag);
          #else
            return hypot(z.real, z.imag);
          #endif
        }
        static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
            __pyx_t_double_complex z;
            double r, lnr, theta, z_r, z_theta;
            if (b.imag == 0 && b.real == (int)b.real) {
                if (b.real < 0) {
                    double denom = a.real * a.real + a.imag * a.imag;
                    a.real = a.real / denom;
                    a.imag = -a.imag / denom;
                    b.real = -b.real;
                }
                switch ((int)b.real) {
                    case 0:
                        z.real = 1;
                        z.imag = 0;
                        return z;
                    case 1:
                        return a;
                    case 2:
                        return __Pyx_c_prod_double(a, a);
                    case 3:
                        z = __Pyx_c_prod_double(a, a);
                        return __Pyx_c_prod_double(z, a);
                    case 4:
                        z = __Pyx_c_prod_double(a, a);
                        return __Pyx_c_prod_double(z, z);
                }
            }
            if (a.imag == 0) {
                if (a.real == 0) {
                    return a;
                } else if ((b.imag == 0) && (a.real >= 0)) {
                    z.real = pow(a.real, b.real);
                    z.imag = 0;
                    return z;
                } else if (a.real > 0) {
                    r = a.real;
                    theta = 0;
                } else {
                    r = -a.real;
                    theta = atan2(0.0, -1.0);
                }
            } else {
                r = __Pyx_c_abs_double(a);
                theta = atan2(a.imag, a.real);
            }
            lnr = log(r);
            z_r = exp(lnr * b.real - theta * b.imag);
            z_theta = theta * b.real + lnr * b.imag;
            z.real = z_r * cos(z_theta);
            z.imag = z_r * sin(z_theta);
            return z;
        }
    #endif
#endif

/* CIntFromPy */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int neg_one = (int) -1, const_zero = (int) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(int) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (int) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case  1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
                            return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
                            return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
                            return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (int) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(int) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(int,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(int) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            int val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (int) -1;
        }
    } else {
        int val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (int) -1;
        val = __Pyx_PyInt_As_int(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to int");
    return (int) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to int");
    return (int) -1;
}

/* CIntToPy */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int neg_one = (int) -1, const_zero = (int) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(int) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(int) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(int) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(int),
                                     little, !is_unsigned);
    }
}

/* CIntToPy */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const long neg_one = (long) -1, const_zero = (long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(long) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(long) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(long) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(long),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const long neg_one = (long) -1, const_zero = (long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(long) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (long) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case  1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
                            return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
                            return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
                            return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (long) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(long) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(long,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(long) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            long val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (long) -1;
        }
    } else {
        long val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (long) -1;
        val = __Pyx_PyInt_As_long(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to long");
    return (long) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to long");
    return (long) -1;
}

/* FastTypeChecks */
#if CYTHON_COMPILING_IN_CPYTHON
static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
    while (a) {
        a = a->tp_base;
        if (a == b)
            return 1;
    }
    return b == &PyBaseObject_Type;
}
static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
    PyObject *mro;
    if (a == b) return 1;
    mro = a->tp_mro;
    if (likely(mro)) {
        Py_ssize_t i, n;
        n = PyTuple_GET_SIZE(mro);
        for (i = 0; i < n; i++) {
            if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
                return 1;
        }
        return 0;
    }
    return __Pyx_InBases(a, b);
}
#if PY_MAJOR_VERSION == 2
static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
    PyObject *exception, *value, *tb;
    int res;
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&exception, &value, &tb);
    res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
    if (unlikely(res == -1)) {
        PyErr_WriteUnraisable(err);
        res = 0;
    }
    if (!res) {
        res = PyObject_IsSubclass(err, exc_type2);
        if (unlikely(res == -1)) {
            PyErr_WriteUnraisable(err);
            res = 0;
        }
    }
    __Pyx_ErrRestore(exception, value, tb);
    return res;
}
#else
static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
    int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0;
    if (!res) {
        res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
    }
    return res;
}
#endif
static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
    Py_ssize_t i, n;
    assert(PyExceptionClass_Check(exc_type));
    n = PyTuple_GET_SIZE(tuple);
#if PY_MAJOR_VERSION >= 3
    for (i=0; i<n; i++) {
        if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
    }
#endif
    for (i=0; i<n; i++) {
        PyObject *t = PyTuple_GET_ITEM(tuple, i);
        #if PY_MAJOR_VERSION < 3
        if (likely(exc_type == t)) return 1;
        #endif
        if (likely(PyExceptionClass_Check(t))) {
            if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
        } else {
        }
    }
    return 0;
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
    if (likely(err == exc_type)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        if (likely(PyExceptionClass_Check(exc_type))) {
            return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
        } else if (likely(PyTuple_Check(exc_type))) {
            return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
        } else {
        }
    }
    return PyErr_GivenExceptionMatches(err, exc_type);
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
    assert(PyExceptionClass_Check(exc_type1));
    assert(PyExceptionClass_Check(exc_type2));
    if (likely(err == exc_type1 || err == exc_type2)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
    }
    return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
}
#endif

/* CheckBinaryVersion */
static int __Pyx_check_binary_version(void) {
    char ctversion[5];
    int same=1, i, found_dot;
    const char* rt_from_call = Py_GetVersion();
    PyOS_snprintf(ctversion, 5, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
    found_dot = 0;
    for (i = 0; i < 4; i++) {
        if (!ctversion[i]) {
            same = (rt_from_call[i] < '0' || rt_from_call[i] > '9');
            break;
        }
        if (rt_from_call[i] != ctversion[i]) {
            same = 0;
            break;
        }
    }
    if (!same) {
        char rtversion[5] = {'\0'};
        char message[200];
        for (i=0; i<4; ++i) {
            if (rt_from_call[i] == '.') {
                if (found_dot) break;
                found_dot = 1;
            } else if (rt_from_call[i] < '0' || rt_from_call[i] > '9') {
                break;
            }
            rtversion[i] = rt_from_call[i];
        }
        PyOS_snprintf(message, sizeof(message),
                      "compiletime version %s of module '%.100s' "
                      "does not match runtime version %s",
                      ctversion, __Pyx_MODULE_NAME, rtversion);
        return PyErr_WarnEx(NULL, message, 1);
    }
    return 0;
}

/* FunctionExport */
static int __Pyx_ExportFunction(const char *name, void (*f)(void), const char *sig) {
    PyObject *d = 0;
    PyObject *cobj = 0;
    union {
        void (*fp)(void);
        void *p;
    } tmp;
    d = PyObject_GetAttrString(__pyx_m, (char *)"__pyx_capi__");
    if (!d) {
        PyErr_Clear();
        d = PyDict_New();
        if (!d)
            goto bad;
        Py_INCREF(d);
        if (PyModule_AddObject(__pyx_m, (char *)"__pyx_capi__", d) < 0)
            goto bad;
    }
    tmp.fp = f;
#if PY_VERSION_HEX >= 0x02070000
    cobj = PyCapsule_New(tmp.p, sig, 0);
#else
    cobj = PyCObject_FromVoidPtrAndDesc(tmp.p, (void *)sig, 0);
#endif
    if (!cobj)
        goto bad;
    if (PyDict_SetItemString(d, name, cobj) < 0)
        goto bad;
    Py_DECREF(cobj);
    Py_DECREF(d);
    return 0;
bad:
    Py_XDECREF(cobj);
    Py_XDECREF(d);
    return -1;
}

/* FunctionImport */
#ifndef __PYX_HAVE_RT_ImportFunction_0_29_35
#define __PYX_HAVE_RT_ImportFunction_0_29_35
static int __Pyx_ImportFunction_0_29_35(PyObject *module, const char *funcname, void (**f)(void), const char *sig) {
    PyObject *d = 0;
    PyObject *cobj = 0;
    union {
        void (*fp)(void);
        void *p;
    } tmp;
    d = PyObject_GetAttrString(module, (char *)"__pyx_capi__");
    if (!d)
        goto bad;
    cobj = PyDict_GetItemString(d, funcname);
    if (!cobj) {
        PyErr_Format(PyExc_ImportError,
            "%.200s does not export expected C function %.200s",
                PyModule_GetName(module), funcname);
        goto bad;
    }
#if PY_VERSION_HEX >= 0x02070000
    if (!PyCapsule_IsValid(cobj, sig)) {
        PyErr_Format(PyExc_TypeError,
            "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)",
             PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj));
        goto bad;
    }
    tmp.p = PyCapsule_GetPointer(cobj, sig);
#else
    {const char *desc, *s1, *s2;
    desc = (const char *)PyCObject_GetDesc(cobj);
    if (!desc)
        goto bad;
    s1 = desc; s2 = sig;
    while (*s1 != '\0' && *s1 == *s2) { s1++; s2++; }
    if (*s1 != *s2) {
        PyErr_Format(PyExc_TypeError,
            "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)",
             PyModule_GetName(module), funcname, sig, desc);
        goto bad;
    }
    tmp.p = PyCObject_AsVoidPtr(cobj);}
#endif
    *f = tmp.fp;
    if (!(*f))
        goto bad;
    Py_DECREF(d);
    return 0;
bad:
    Py_XDECREF(d);
    return -1;
}
#endif

/* InitStrings */
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
    while (t->p) {
        #if PY_MAJOR_VERSION < 3
        if (t->is_unicode) {
            *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
        } else if (t->intern) {
            *t->p = PyString_InternFromString(t->s);
        } else {
            *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
        }
        #else
        if (t->is_unicode | t->is_str) {
            if (t->intern) {
                *t->p = PyUnicode_InternFromString(t->s);
            } else if (t->encoding) {
                *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
            } else {
                *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
            }
        } else {
            *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
        }
        #endif
        if (!*t->p)
            return -1;
        if (PyObject_Hash(*t->p) == -1)
            return -1;
        ++t;
    }
    return 0;
}

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
    return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
}
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
    Py_ssize_t ignore;
    return __Pyx_PyObject_AsStringAndSize(o, &ignore);
}
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
#if !CYTHON_PEP393_ENABLED
static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    char* defenc_c;
    PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
    if (!defenc) return NULL;
    defenc_c = PyBytes_AS_STRING(defenc);
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    {
        char* end = defenc_c + PyBytes_GET_SIZE(defenc);
        char* c;
        for (c = defenc_c; c < end; c++) {
            if ((unsigned char) (*c) >= 128) {
                PyUnicode_AsASCIIString(o);
                return NULL;
            }
        }
    }
#endif
    *length = PyBytes_GET_SIZE(defenc);
    return defenc_c;
}
#else
static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    if (likely(PyUnicode_IS_ASCII(o))) {
        *length = PyUnicode_GET_LENGTH(o);
        return PyUnicode_AsUTF8(o);
    } else {
        PyUnicode_AsASCIIString(o);
        return NULL;
    }
#else
    return PyUnicode_AsUTF8AndSize(o, length);
#endif
}
#endif
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
    if (
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
            __Pyx_sys_getdefaultencoding_not_ascii &&
#endif
            PyUnicode_Check(o)) {
        return __Pyx_PyUnicode_AsStringAndSize(o, length);
    } else
#endif
#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
    if (PyByteArray_Check(o)) {
        *length = PyByteArray_GET_SIZE(o);
        return PyByteArray_AS_STRING(o);
    } else
#endif
    {
        char* result;
        int r = PyBytes_AsStringAndSize(o, &result, length);
        if (unlikely(r < 0)) {
            return NULL;
        } else {
            return result;
        }
    }
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
   int is_true = x == Py_True;
   if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
   else return PyObject_IsTrue(x);
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
    int retval;
    if (unlikely(!x)) return -1;
    retval = __Pyx_PyObject_IsTrue(x);
    Py_DECREF(x);
    return retval;
}
static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
#if PY_MAJOR_VERSION >= 3
    if (PyLong_Check(result)) {
        if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
                "__int__ returned non-int (type %.200s).  "
                "The ability to return an instance of a strict subclass of int "
                "is deprecated, and may be removed in a future version of Python.",
                Py_TYPE(result)->tp_name)) {
            Py_DECREF(result);
            return NULL;
        }
        return result;
    }
#endif
    PyErr_Format(PyExc_TypeError,
                 "__%.4s__ returned non-%.4s (type %.200s)",
                 type_name, type_name, Py_TYPE(result)->tp_name);
    Py_DECREF(result);
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
#if CYTHON_USE_TYPE_SLOTS
  PyNumberMethods *m;
#endif
  const char *name = NULL;
  PyObject *res = NULL;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_Check(x) || PyLong_Check(x)))
#else
  if (likely(PyLong_Check(x)))
#endif
    return __Pyx_NewRef(x);
#if CYTHON_USE_TYPE_SLOTS
  m = Py_TYPE(x)->tp_as_number;
  #if PY_MAJOR_VERSION < 3
  if (m && m->nb_int) {
    name = "int";
    res = m->nb_int(x);
  }
  else if (m && m->nb_long) {
    name = "long";
    res = m->nb_long(x);
  }
  #else
  if (likely(m && m->nb_int)) {
    name = "int";
    res = m->nb_int(x);
  }
  #endif
#else
  if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
    res = PyNumber_Int(x);
  }
#endif
  if (likely(res)) {
#if PY_MAJOR_VERSION < 3
    if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
#else
    if (unlikely(!PyLong_CheckExact(res))) {
#endif
        return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
    }
  }
  else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_TypeError,
                    "an integer is required");
  }
  return res;
}
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
  Py_ssize_t ival;
  PyObject *x;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_CheckExact(b))) {
    if (sizeof(Py_ssize_t) >= sizeof(long))
        return PyInt_AS_LONG(b);
    else
        return PyInt_AsSsize_t(b);
  }
#endif
  if (likely(PyLong_CheckExact(b))) {
    #if CYTHON_USE_PYLONG_INTERNALS
    const digit* digits = ((PyLongObject*)b)->ob_digit;
    const Py_ssize_t size = Py_SIZE(b);
    if (likely(__Pyx_sst_abs(size) <= 1)) {
        ival = likely(size) ? digits[0] : 0;
        if (size == -1) ival = -ival;
        return ival;
    } else {
      switch (size) {
         case 2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
      }
    }
    #endif
    return PyLong_AsSsize_t(b);
  }
  x = PyNumber_Index(b);
  if (!x) return -1;
  ival = PyInt_AsSsize_t(x);
  Py_DECREF(x);
  return ival;
}
static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) {
  if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) {
    return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o);
#if PY_MAJOR_VERSION < 3
  } else if (likely(PyInt_CheckExact(o))) {
    return PyInt_AS_LONG(o);
#endif
  } else {
    Py_ssize_t ival;
    PyObject *x;
    x = PyNumber_Index(o);
    if (!x) return -1;
    ival = PyInt_AsLong(x);
    Py_DECREF(x);
    return ival;
  }
}
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
  return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
}
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
    return PyInt_FromSize_t(ival);
}


#endif /* Py_PYTHON_H */
