/* Generated by Cython 0.29.33 */

/* BEGIN: Cython Metadata
{
    "distutils": {
        "define_macros": [
            [
                "NPY_NO_DEPRECATED_API",
                "NPY_1_7_API_VERSION"
            ]
        ],
        "depends": [
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/bgzf.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/cram.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/faidx.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/hfile.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/hts.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/kstring.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/sam.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/tbx.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/vcf.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib/vcfutils.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/core/include/numpy/arrayobject.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/core/include/numpy/arrayscalars.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/core/include/numpy/ndarrayobject.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/core/include/numpy/ndarraytypes.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/core/include/numpy/ufuncobject.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam/htslib_util.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam/pysam_stream.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/work/dysgu/find_reads.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/work/dysgu/robin_hood.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/work/dysgu/wrap_map_set2.h",
            "/opt/conda/conda-bld/dysgu_1678144273184/work/dysgu/xxhash64.h"
        ],
        "extra_compile_args": [
            "-std=c++11",
            "-Wno-sign-compare",
            "-Wno-unused-function",
            "-Wno-unused-result",
            "-Wno-ignored-qualifiers",
            "-Wno-deprecated-declarations"
        ],
        "include_dirs": [
            "./dysgu",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/core/include",
            "/opt/conda/conda-bld/dysgu_1678144273184/work",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include/htslib",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/include",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam/include/htslib",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam/include/samtools"
        ],
        "language": "c++",
        "libraries": [
            "hts"
        ],
        "library_dirs": [
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/core/include",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam/include/htslib",
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/pysam/include/samtools"
        ],
        "name": "dysgu.graph",
        "runtime_library_dirs": [
            "/opt/conda/conda-bld/dysgu_1678144273184/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib"
        ],
        "sources": [
            "dysgu/graph.pyx"
        ]
    },
    "module_name": "dysgu.graph"
}
END: Cython Metadata */

#ifndef PY_SSIZE_T_CLEAN
#define PY_SSIZE_T_CLEAN
#endif /* PY_SSIZE_T_CLEAN */
#include "Python.h"
#ifndef Py_PYTHON_H
    #error Python headers needed to compile C extensions, please install development version of Python.
#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
    #error Cython requires Python 2.6+ or Python 3.3+.
#else
#define CYTHON_ABI "0_29_33"
#define CYTHON_HEX_VERSION 0x001D21F0
#define CYTHON_FUTURE_DIVISION 1
#include <stddef.h>
#ifndef offsetof
  #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
#endif
#if !defined(WIN32) && !defined(MS_WINDOWS)
  #ifndef __stdcall
    #define __stdcall
  #endif
  #ifndef __cdecl
    #define __cdecl
  #endif
  #ifndef __fastcall
    #define __fastcall
  #endif
#endif
#ifndef DL_IMPORT
  #define DL_IMPORT(t) t
#endif
#ifndef DL_EXPORT
  #define DL_EXPORT(t) t
#endif
#define __PYX_COMMA ,
#ifndef HAVE_LONG_LONG
  #if PY_VERSION_HEX >= 0x02070000
    #define HAVE_LONG_LONG
  #endif
#endif
#ifndef PY_LONG_LONG
  #define PY_LONG_LONG LONG_LONG
#endif
#ifndef Py_HUGE_VAL
  #define Py_HUGE_VAL HUGE_VAL
#endif
#ifdef PYPY_VERSION
  #define CYTHON_COMPILING_IN_PYPY 1
  #define CYTHON_COMPILING_IN_PYSTON 0
  #define CYTHON_COMPILING_IN_CPYTHON 0
  #define CYTHON_COMPILING_IN_NOGIL 0
  #undef CYTHON_USE_TYPE_SLOTS
  #define CYTHON_USE_TYPE_SLOTS 0
  #undef CYTHON_USE_PYTYPE_LOOKUP
  #define CYTHON_USE_PYTYPE_LOOKUP 0
  #if PY_VERSION_HEX < 0x03050000
    #undef CYTHON_USE_ASYNC_SLOTS
    #define CYTHON_USE_ASYNC_SLOTS 0
  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
    #define CYTHON_USE_ASYNC_SLOTS 1
  #endif
  #undef CYTHON_USE_PYLIST_INTERNALS
  #define CYTHON_USE_PYLIST_INTERNALS 0
  #undef CYTHON_USE_UNICODE_INTERNALS
  #define CYTHON_USE_UNICODE_INTERNALS 0
  #undef CYTHON_USE_UNICODE_WRITER
  #define CYTHON_USE_UNICODE_WRITER 0
  #undef CYTHON_USE_PYLONG_INTERNALS
  #define CYTHON_USE_PYLONG_INTERNALS 0
  #undef CYTHON_AVOID_BORROWED_REFS
  #define CYTHON_AVOID_BORROWED_REFS 1
  #undef CYTHON_ASSUME_SAFE_MACROS
  #define CYTHON_ASSUME_SAFE_MACROS 0
  #undef CYTHON_UNPACK_METHODS
  #define CYTHON_UNPACK_METHODS 0
  #undef CYTHON_FAST_THREAD_STATE
  #define CYTHON_FAST_THREAD_STATE 0
  #undef CYTHON_FAST_PYCALL
  #define CYTHON_FAST_PYCALL 0
  #undef CYTHON_PEP489_MULTI_PHASE_INIT
  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
  #undef CYTHON_USE_TP_FINALIZE
  #define CYTHON_USE_TP_FINALIZE 0
  #undef CYTHON_USE_DICT_VERSIONS
  #define CYTHON_USE_DICT_VERSIONS 0
  #undef CYTHON_USE_EXC_INFO_STACK
  #define CYTHON_USE_EXC_INFO_STACK 0
  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
    #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
  #endif
#elif defined(PYSTON_VERSION)
  #define CYTHON_COMPILING_IN_PYPY 0
  #define CYTHON_COMPILING_IN_PYSTON 1
  #define CYTHON_COMPILING_IN_CPYTHON 0
  #define CYTHON_COMPILING_IN_NOGIL 0
  #ifndef CYTHON_USE_TYPE_SLOTS
    #define CYTHON_USE_TYPE_SLOTS 1
  #endif
  #undef CYTHON_USE_PYTYPE_LOOKUP
  #define CYTHON_USE_PYTYPE_LOOKUP 0
  #undef CYTHON_USE_ASYNC_SLOTS
  #define CYTHON_USE_ASYNC_SLOTS 0
  #undef CYTHON_USE_PYLIST_INTERNALS
  #define CYTHON_USE_PYLIST_INTERNALS 0
  #ifndef CYTHON_USE_UNICODE_INTERNALS
    #define CYTHON_USE_UNICODE_INTERNALS 1
  #endif
  #undef CYTHON_USE_UNICODE_WRITER
  #define CYTHON_USE_UNICODE_WRITER 0
  #undef CYTHON_USE_PYLONG_INTERNALS
  #define CYTHON_USE_PYLONG_INTERNALS 0
  #ifndef CYTHON_AVOID_BORROWED_REFS
    #define CYTHON_AVOID_BORROWED_REFS 0
  #endif
  #ifndef CYTHON_ASSUME_SAFE_MACROS
    #define CYTHON_ASSUME_SAFE_MACROS 1
  #endif
  #ifndef CYTHON_UNPACK_METHODS
    #define CYTHON_UNPACK_METHODS 1
  #endif
  #undef CYTHON_FAST_THREAD_STATE
  #define CYTHON_FAST_THREAD_STATE 0
  #undef CYTHON_FAST_PYCALL
  #define CYTHON_FAST_PYCALL 0
  #undef CYTHON_PEP489_MULTI_PHASE_INIT
  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
  #undef CYTHON_USE_TP_FINALIZE
  #define CYTHON_USE_TP_FINALIZE 0
  #undef CYTHON_USE_DICT_VERSIONS
  #define CYTHON_USE_DICT_VERSIONS 0
  #undef CYTHON_USE_EXC_INFO_STACK
  #define CYTHON_USE_EXC_INFO_STACK 0
  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
    #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
  #endif
#elif defined(PY_NOGIL)
  #define CYTHON_COMPILING_IN_PYPY 0
  #define CYTHON_COMPILING_IN_PYSTON 0
  #define CYTHON_COMPILING_IN_CPYTHON 0
  #define CYTHON_COMPILING_IN_NOGIL 1
  #ifndef CYTHON_USE_TYPE_SLOTS
    #define CYTHON_USE_TYPE_SLOTS 1
  #endif
  #undef CYTHON_USE_PYTYPE_LOOKUP
  #define CYTHON_USE_PYTYPE_LOOKUP 0
  #ifndef CYTHON_USE_ASYNC_SLOTS
    #define CYTHON_USE_ASYNC_SLOTS 1
  #endif
  #undef CYTHON_USE_PYLIST_INTERNALS
  #define CYTHON_USE_PYLIST_INTERNALS 0
  #ifndef CYTHON_USE_UNICODE_INTERNALS
    #define CYTHON_USE_UNICODE_INTERNALS 1
  #endif
  #undef CYTHON_USE_UNICODE_WRITER
  #define CYTHON_USE_UNICODE_WRITER 0
  #undef CYTHON_USE_PYLONG_INTERNALS
  #define CYTHON_USE_PYLONG_INTERNALS 0
  #ifndef CYTHON_AVOID_BORROWED_REFS
    #define CYTHON_AVOID_BORROWED_REFS 0
  #endif
  #ifndef CYTHON_ASSUME_SAFE_MACROS
    #define CYTHON_ASSUME_SAFE_MACROS 1
  #endif
  #ifndef CYTHON_UNPACK_METHODS
    #define CYTHON_UNPACK_METHODS 1
  #endif
  #undef CYTHON_FAST_THREAD_STATE
  #define CYTHON_FAST_THREAD_STATE 0
  #undef CYTHON_FAST_PYCALL
  #define CYTHON_FAST_PYCALL 0
  #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
    #define CYTHON_PEP489_MULTI_PHASE_INIT 1
  #endif
  #ifndef CYTHON_USE_TP_FINALIZE
    #define CYTHON_USE_TP_FINALIZE 1
  #endif
  #undef CYTHON_USE_DICT_VERSIONS
  #define CYTHON_USE_DICT_VERSIONS 0
  #undef CYTHON_USE_EXC_INFO_STACK
  #define CYTHON_USE_EXC_INFO_STACK 0
#else
  #define CYTHON_COMPILING_IN_PYPY 0
  #define CYTHON_COMPILING_IN_PYSTON 0
  #define CYTHON_COMPILING_IN_CPYTHON 1
  #define CYTHON_COMPILING_IN_NOGIL 0
  #ifndef CYTHON_USE_TYPE_SLOTS
    #define CYTHON_USE_TYPE_SLOTS 1
  #endif
  #if PY_VERSION_HEX < 0x02070000
    #undef CYTHON_USE_PYTYPE_LOOKUP
    #define CYTHON_USE_PYTYPE_LOOKUP 0
  #elif !defined(CYTHON_USE_PYTYPE_LOOKUP)
    #define CYTHON_USE_PYTYPE_LOOKUP 1
  #endif
  #if PY_MAJOR_VERSION < 3
    #undef CYTHON_USE_ASYNC_SLOTS
    #define CYTHON_USE_ASYNC_SLOTS 0
  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
    #define CYTHON_USE_ASYNC_SLOTS 1
  #endif
  #if PY_VERSION_HEX < 0x02070000
    #undef CYTHON_USE_PYLONG_INTERNALS
    #define CYTHON_USE_PYLONG_INTERNALS 0
  #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
    #define CYTHON_USE_PYLONG_INTERNALS 1
  #endif
  #ifndef CYTHON_USE_PYLIST_INTERNALS
    #define CYTHON_USE_PYLIST_INTERNALS 1
  #endif
  #ifndef CYTHON_USE_UNICODE_INTERNALS
    #define CYTHON_USE_UNICODE_INTERNALS 1
  #endif
  #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2
    #undef CYTHON_USE_UNICODE_WRITER
    #define CYTHON_USE_UNICODE_WRITER 0
  #elif !defined(CYTHON_USE_UNICODE_WRITER)
    #define CYTHON_USE_UNICODE_WRITER 1
  #endif
  #ifndef CYTHON_AVOID_BORROWED_REFS
    #define CYTHON_AVOID_BORROWED_REFS 0
  #endif
  #ifndef CYTHON_ASSUME_SAFE_MACROS
    #define CYTHON_ASSUME_SAFE_MACROS 1
  #endif
  #ifndef CYTHON_UNPACK_METHODS
    #define CYTHON_UNPACK_METHODS 1
  #endif
  #if PY_VERSION_HEX >= 0x030B00A4
    #undef CYTHON_FAST_THREAD_STATE
    #define CYTHON_FAST_THREAD_STATE 0
  #elif !defined(CYTHON_FAST_THREAD_STATE)
    #define CYTHON_FAST_THREAD_STATE 1
  #endif
  #ifndef CYTHON_FAST_PYCALL
    #define CYTHON_FAST_PYCALL (PY_VERSION_HEX < 0x030A0000)
  #endif
  #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
    #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000)
  #endif
  #ifndef CYTHON_USE_TP_FINALIZE
    #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1)
  #endif
  #ifndef CYTHON_USE_DICT_VERSIONS
    #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1)
  #endif
  #if PY_VERSION_HEX >= 0x030B00A4
    #undef CYTHON_USE_EXC_INFO_STACK
    #define CYTHON_USE_EXC_INFO_STACK 0
  #elif !defined(CYTHON_USE_EXC_INFO_STACK)
    #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3)
  #endif
  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
    #define CYTHON_UPDATE_DESCRIPTOR_DOC 1
  #endif
#endif
#if !defined(CYTHON_FAST_PYCCALL)
#define CYTHON_FAST_PYCCALL  (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
#endif
#if CYTHON_USE_PYLONG_INTERNALS
  #if PY_MAJOR_VERSION < 3
    #include "longintrepr.h"
  #endif
  #undef SHIFT
  #undef BASE
  #undef MASK
  #ifdef SIZEOF_VOID_P
    enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
  #endif
#endif
#ifndef __has_attribute
  #define __has_attribute(x) 0
#endif
#ifndef __has_cpp_attribute
  #define __has_cpp_attribute(x) 0
#endif
#ifndef CYTHON_RESTRICT
  #if defined(__GNUC__)
    #define CYTHON_RESTRICT __restrict__
  #elif defined(_MSC_VER) && _MSC_VER >= 1400
    #define CYTHON_RESTRICT __restrict
  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define CYTHON_RESTRICT restrict
  #else
    #define CYTHON_RESTRICT
  #endif
#endif
#ifndef CYTHON_UNUSED
# if defined(__GNUC__)
#   if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
#     define CYTHON_UNUSED __attribute__ ((__unused__))
#   else
#     define CYTHON_UNUSED
#   endif
# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
#   define CYTHON_UNUSED __attribute__ ((__unused__))
# else
#   define CYTHON_UNUSED
# endif
#endif
#ifndef CYTHON_MAYBE_UNUSED_VAR
#  if defined(__cplusplus)
     template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
#  else
#    define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
#  endif
#endif
#ifndef CYTHON_NCP_UNUSED
# if CYTHON_COMPILING_IN_CPYTHON
#  define CYTHON_NCP_UNUSED
# else
#  define CYTHON_NCP_UNUSED CYTHON_UNUSED
# endif
#endif
#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
#ifdef _MSC_VER
    #ifndef _MSC_STDINT_H_
        #if _MSC_VER < 1300
           typedef unsigned char     uint8_t;
           typedef unsigned int      uint32_t;
        #else
           typedef unsigned __int8   uint8_t;
           typedef unsigned __int32  uint32_t;
        #endif
    #endif
#else
   #include <stdint.h>
#endif
#ifndef CYTHON_FALLTHROUGH
  #if defined(__cplusplus) && __cplusplus >= 201103L
    #if __has_cpp_attribute(fallthrough)
      #define CYTHON_FALLTHROUGH [[fallthrough]]
    #elif __has_cpp_attribute(clang::fallthrough)
      #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
    #elif __has_cpp_attribute(gnu::fallthrough)
      #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
    #endif
  #endif
  #ifndef CYTHON_FALLTHROUGH
    #if __has_attribute(fallthrough)
      #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
    #else
      #define CYTHON_FALLTHROUGH
    #endif
  #endif
  #if defined(__clang__ ) && defined(__apple_build_version__)
    #if __apple_build_version__ < 7000000
      #undef  CYTHON_FALLTHROUGH
      #define CYTHON_FALLTHROUGH
    #endif
  #endif
#endif

#ifndef __cplusplus
  #error "Cython files generated with the C++ option must be compiled with a C++ compiler."
#endif
#ifndef CYTHON_INLINE
  #if defined(__clang__)
    #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
  #else
    #define CYTHON_INLINE inline
  #endif
#endif
template<typename T>
void __Pyx_call_destructor(T& x) {
    x.~T();
}
template<typename T>
class __Pyx_FakeReference {
  public:
    __Pyx_FakeReference() : ptr(NULL) { }
    __Pyx_FakeReference(const T& ref) : ptr(const_cast<T*>(&ref)) { }
    T *operator->() { return ptr; }
    T *operator&() { return ptr; }
    operator T&() { return *ptr; }
    template<typename U> bool operator ==(U other) { return *ptr == other; }
    template<typename U> bool operator !=(U other) { return *ptr != other; }
  private:
    T *ptr;
};

#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
  #define Py_OptimizeFlag 0
#endif
#define __PYX_BUILD_PY_SSIZE_T "n"
#define CYTHON_FORMAT_SSIZE_T "z"
#if PY_MAJOR_VERSION < 3
  #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
  #define __Pyx_DefaultClassType PyClass_Type
#else
  #define __Pyx_BUILTIN_MODULE_NAME "builtins"
  #define __Pyx_DefaultClassType PyType_Type
#if PY_VERSION_HEX >= 0x030B00A1
    static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int k, int l, int s, int f,
                                                    PyObject *code, PyObject *c, PyObject* n, PyObject *v,
                                                    PyObject *fv, PyObject *cell, PyObject* fn,
                                                    PyObject *name, int fline, PyObject *lnos) {
        PyObject *kwds=NULL, *argcount=NULL, *posonlyargcount=NULL, *kwonlyargcount=NULL;
        PyObject *nlocals=NULL, *stacksize=NULL, *flags=NULL, *replace=NULL, *call_result=NULL, *empty=NULL;
        const char *fn_cstr=NULL;
        const char *name_cstr=NULL;
        PyCodeObject* co=NULL;
        PyObject *type, *value, *traceback;
        PyErr_Fetch(&type, &value, &traceback);
        if (!(kwds=PyDict_New())) goto end;
        if (!(argcount=PyLong_FromLong(a))) goto end;
        if (PyDict_SetItemString(kwds, "co_argcount", argcount) != 0) goto end;
        if (!(posonlyargcount=PyLong_FromLong(0))) goto end;
        if (PyDict_SetItemString(kwds, "co_posonlyargcount", posonlyargcount) != 0) goto end;
        if (!(kwonlyargcount=PyLong_FromLong(k))) goto end;
        if (PyDict_SetItemString(kwds, "co_kwonlyargcount", kwonlyargcount) != 0) goto end;
        if (!(nlocals=PyLong_FromLong(l))) goto end;
        if (PyDict_SetItemString(kwds, "co_nlocals", nlocals) != 0) goto end;
        if (!(stacksize=PyLong_FromLong(s))) goto end;
        if (PyDict_SetItemString(kwds, "co_stacksize", stacksize) != 0) goto end;
        if (!(flags=PyLong_FromLong(f))) goto end;
        if (PyDict_SetItemString(kwds, "co_flags", flags) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_code", code) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_consts", c) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_names", n) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_varnames", v) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_freevars", fv) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_cellvars", cell) != 0) goto end;
        if (PyDict_SetItemString(kwds, "co_linetable", lnos) != 0) goto end;
        if (!(fn_cstr=PyUnicode_AsUTF8AndSize(fn, NULL))) goto end;
        if (!(name_cstr=PyUnicode_AsUTF8AndSize(name, NULL))) goto end;
        if (!(co = PyCode_NewEmpty(fn_cstr, name_cstr, fline))) goto end;
        if (!(replace = PyObject_GetAttrString((PyObject*)co, "replace"))) goto cleanup_code_too;
        if (!(empty = PyTuple_New(0))) goto cleanup_code_too; // unfortunately __pyx_empty_tuple isn't available here
        if (!(call_result = PyObject_Call(replace, empty, kwds))) goto cleanup_code_too;
        Py_XDECREF((PyObject*)co);
        co = (PyCodeObject*)call_result;
        call_result = NULL;
        if (0) {
            cleanup_code_too:
            Py_XDECREF((PyObject*)co);
            co = NULL;
        }
        end:
        Py_XDECREF(kwds);
        Py_XDECREF(argcount);
        Py_XDECREF(posonlyargcount);
        Py_XDECREF(kwonlyargcount);
        Py_XDECREF(nlocals);
        Py_XDECREF(stacksize);
        Py_XDECREF(replace);
        Py_XDECREF(call_result);
        Py_XDECREF(empty);
        if (type) {
            PyErr_Restore(type, value, traceback);
        }
        return co;
    }
#else
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
#endif
  #define __Pyx_DefaultClassType PyType_Type
#endif
#ifndef Py_TPFLAGS_CHECKTYPES
  #define Py_TPFLAGS_CHECKTYPES 0
#endif
#ifndef Py_TPFLAGS_HAVE_INDEX
  #define Py_TPFLAGS_HAVE_INDEX 0
#endif
#ifndef Py_TPFLAGS_HAVE_NEWBUFFER
  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
#endif
#ifndef Py_TPFLAGS_HAVE_FINALIZE
  #define Py_TPFLAGS_HAVE_FINALIZE 0
#endif
#ifndef METH_STACKLESS
  #define METH_STACKLESS 0
#endif
#if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
  #ifndef METH_FASTCALL
     #define METH_FASTCALL 0x80
  #endif
  typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
  typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
                                                          Py_ssize_t nargs, PyObject *kwnames);
#else
  #define __Pyx_PyCFunctionFast _PyCFunctionFast
  #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
#endif
#if CYTHON_FAST_PYCCALL
#define __Pyx_PyFastCFunction_Check(func)\
    ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)))))
#else
#define __Pyx_PyFastCFunction_Check(func) 0
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
  #define PyObject_Malloc(s)   PyMem_Malloc(s)
  #define PyObject_Free(p)     PyMem_Free(p)
  #define PyObject_Realloc(p)  PyMem_Realloc(p)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1
  #define PyMem_RawMalloc(n)           PyMem_Malloc(n)
  #define PyMem_RawRealloc(p, n)       PyMem_Realloc(p, n)
  #define PyMem_RawFree(p)             PyMem_Free(p)
#endif
#if CYTHON_COMPILING_IN_PYSTON
  #define __Pyx_PyCode_HasFreeVars(co)  PyCode_HasFreeVars(co)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
#else
  #define __Pyx_PyCode_HasFreeVars(co)  (PyCode_GetNumFree(co) > 0)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno)  (frame)->f_lineno = (lineno)
#endif
#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#elif PY_VERSION_HEX >= 0x03060000
  #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
#elif PY_VERSION_HEX >= 0x03000000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#else
  #define __Pyx_PyThreadState_Current _PyThreadState_Current
#endif
#if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
#include "pythread.h"
#define Py_tss_NEEDS_INIT 0
typedef int Py_tss_t;
static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
  *key = PyThread_create_key();
  return 0;
}
static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
  Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
  *key = Py_tss_NEEDS_INIT;
  return key;
}
static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
  PyObject_Free(key);
}
static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
  return *key != Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
  PyThread_delete_key(*key);
  *key = Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
  return PyThread_set_key_value(*key, value);
}
static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
  return PyThread_get_key_value(*key);
}
#endif
#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
#define __Pyx_PyDict_NewPresized(n)  ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
#else
#define __Pyx_PyDict_NewPresized(n)  PyDict_New()
#endif
#if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_TrueDivide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceTrueDivide(x,y)
#else
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_Divide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceDivide(x,y)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
#define __Pyx_PyDict_GetItemStr(dict, name)  _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
#else
#define __Pyx_PyDict_GetItemStr(dict, name)  PyDict_GetItem(dict, name)
#endif
#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
  #define CYTHON_PEP393_ENABLED 1
  #if PY_VERSION_HEX >= 0x030C0000
    #define __Pyx_PyUnicode_READY(op)       (0)
  #else
    #define __Pyx_PyUnicode_READY(op)       (likely(PyUnicode_IS_READY(op)) ?\
                                                0 : _PyUnicode_Ready((PyObject *)(op)))
  #endif
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_LENGTH(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   PyUnicode_MAX_CHAR_VALUE(u)
  #define __Pyx_PyUnicode_KIND(u)         PyUnicode_KIND(u)
  #define __Pyx_PyUnicode_DATA(u)         PyUnicode_DATA(u)
  #define __Pyx_PyUnicode_READ(k, d, i)   PyUnicode_READ(k, d, i)
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  PyUnicode_WRITE(k, d, i, ch)
  #if PY_VERSION_HEX >= 0x030C0000
    #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != PyUnicode_GET_LENGTH(u))
  #else
    #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000
    #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length))
    #else
    #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
    #endif
  #endif
#else
  #define CYTHON_PEP393_ENABLED 0
  #define PyUnicode_1BYTE_KIND  1
  #define PyUnicode_2BYTE_KIND  2
  #define PyUnicode_4BYTE_KIND  4
  #define __Pyx_PyUnicode_READY(op)       (0)
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_SIZE(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
  #define __Pyx_PyUnicode_KIND(u)         (sizeof(Py_UNICODE))
  #define __Pyx_PyUnicode_DATA(u)         ((void*)PyUnicode_AS_UNICODE(u))
  #define __Pyx_PyUnicode_READ(k, d, i)   ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != PyUnicode_GET_SIZE(u))
#endif
#if CYTHON_COMPILING_IN_PYPY
  #define __Pyx_PyUnicode_Concat(a, b)      PyNumber_Add(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  PyNumber_Add(a, b)
#else
  #define __Pyx_PyUnicode_Concat(a, b)      PyUnicode_Concat(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
      PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
  #define PyUnicode_Contains(u, s)  PySequence_Contains(u, s)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
  #define PyByteArray_Check(obj)  PyObject_TypeCheck(obj, &PyByteArray_Type)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
  #define PyObject_Format(obj, fmt)  PyObject_CallMethod(obj, "__format__", "O", fmt)
#endif
#define __Pyx_PyString_FormatSafe(a, b)   ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
#define __Pyx_PyUnicode_FormatSafe(a, b)  ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyString_Format(a, b)  PyUnicode_Format(a, b)
#else
  #define __Pyx_PyString_Format(a, b)  PyString_Format(a, b)
#endif
#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
  #define PyObject_ASCII(o)            PyObject_Repr(o)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBaseString_Type            PyUnicode_Type
  #define PyStringObject               PyUnicodeObject
  #define PyString_Type                PyUnicode_Type
  #define PyString_Check               PyUnicode_Check
  #define PyString_CheckExact          PyUnicode_CheckExact
#ifndef PyObject_Unicode
  #define PyObject_Unicode             PyObject_Str
#endif
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
#else
  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
#endif
#ifndef PySet_CheckExact
  #define PySet_CheckExact(obj)        (Py_TYPE(obj) == &PySet_Type)
#endif
#if PY_VERSION_HEX >= 0x030900A4
  #define __Pyx_SET_REFCNT(obj, refcnt) Py_SET_REFCNT(obj, refcnt)
  #define __Pyx_SET_SIZE(obj, size) Py_SET_SIZE(obj, size)
#else
  #define __Pyx_SET_REFCNT(obj, refcnt) Py_REFCNT(obj) = (refcnt)
  #define __Pyx_SET_SIZE(obj, size) Py_SIZE(obj) = (size)
#endif
#if CYTHON_ASSUME_SAFE_MACROS
  #define __Pyx_PySequence_SIZE(seq)  Py_SIZE(seq)
#else
  #define __Pyx_PySequence_SIZE(seq)  PySequence_Size(seq)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyIntObject                  PyLongObject
  #define PyInt_Type                   PyLong_Type
  #define PyInt_Check(op)              PyLong_Check(op)
  #define PyInt_CheckExact(op)         PyLong_CheckExact(op)
  #define PyInt_FromString             PyLong_FromString
  #define PyInt_FromUnicode            PyLong_FromUnicode
  #define PyInt_FromLong               PyLong_FromLong
  #define PyInt_FromSize_t             PyLong_FromSize_t
  #define PyInt_FromSsize_t            PyLong_FromSsize_t
  #define PyInt_AsLong                 PyLong_AsLong
  #define PyInt_AS_LONG                PyLong_AS_LONG
  #define PyInt_AsSsize_t              PyLong_AsSsize_t
  #define PyInt_AsUnsignedLongMask     PyLong_AsUnsignedLongMask
  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
  #define PyNumber_Int                 PyNumber_Long
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBoolObject                 PyLongObject
#endif
#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
  #ifndef PyUnicode_InternFromString
    #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
  #endif
#endif
#if PY_VERSION_HEX < 0x030200A4
  typedef long Py_hash_t;
  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
  #define __Pyx_PyInt_AsHash_t   __Pyx_PyIndex_AsHash_t
#else
  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
  #define __Pyx_PyInt_AsHash_t   __Pyx_PyIndex_AsSsize_t
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? ((void)(klass), PyMethod_New(func, self)) : __Pyx_NewRef(func))
#else
  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
#endif
#if CYTHON_USE_ASYNC_SLOTS
  #if PY_VERSION_HEX >= 0x030500B1
    #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
    #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
  #else
    #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
  #endif
#else
  #define __Pyx_PyType_AsAsync(obj) NULL
#endif
#ifndef __Pyx_PyAsyncMethodsStruct
    typedef struct {
        unaryfunc am_await;
        unaryfunc am_aiter;
        unaryfunc am_anext;
    } __Pyx_PyAsyncMethodsStruct;
#endif

#if defined(_WIN32) || defined(WIN32) || defined(MS_WINDOWS)
  #if !defined(_USE_MATH_DEFINES)
    #define _USE_MATH_DEFINES
  #endif
#endif
#include <math.h>
#ifdef NAN
#define __PYX_NAN() ((float) NAN)
#else
static CYTHON_INLINE float __PYX_NAN() {
  float value;
  memset(&value, 0xFF, sizeof(value));
  return value;
}
#endif
#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
#define __Pyx_truncl trunc
#else
#define __Pyx_truncl truncl
#endif

#define __PYX_MARK_ERR_POS(f_index, lineno) \
    { __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; }
#define __PYX_ERR(f_index, lineno, Ln_error) \
    { __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; }

#ifndef __PYX_EXTERN_C
  #ifdef __cplusplus
    #define __PYX_EXTERN_C extern "C"
  #else
    #define __PYX_EXTERN_C extern
  #endif
#endif

#define __PYX_HAVE__dysgu__graph
#define __PYX_HAVE_API__dysgu__graph
/* Early includes */
#include <string.h>
#include <stdio.h>
#include "numpy/arrayobject.h"
#include "numpy/ndarrayobject.h"
#include "numpy/ndarraytypes.h"
#include "numpy/arrayscalars.h"
#include "numpy/ufuncobject.h"

    /* NumPy API declarations from "numpy/__init__.pxd" */
    
#include "pythread.h"
#include "ios"
#include "new"
#include "stdexcept"
#include "typeinfo"
#include <vector>
#include <utility>

    #if __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)
    // move should be defined for these versions of MSVC, but __cplusplus isn't set usefully
    #include <type_traits>

    namespace cython_std {
    template <typename T> typename std::remove_reference<T>::type&& move(T& t) noexcept { return std::move(t); }
    template <typename T> typename std::remove_reference<T>::type&& move(T&& t) noexcept { return std::move(t); }
    }

    #endif
    
#include <unordered_map>
#include <stdint.h>
#include "xxhash64.h"
#include "robin_hood.h"
#include "find_reads.h"
#include "wrap_map_set2.h"
#include <map>
#include <string>
#include <deque>
#include <stdlib.h>
#include <sys/types.h>
#include "stdarg.h"
#include "htslib/kstring.h"
#include "htslib_util.h"
#include "htslib/hfile.h"
#include "htslib/bgzf.h"
#include "htslib/hts.h"
#include "htslib/sam.h"
#include "htslib/faidx.h"
#include "htslib/tbx.h"
#include "htslib/vcf.h"
#include "htslib/vcfutils.h"
#include "htslib/cram.h"
#include "pysam_stream.h"
#include "pystate.h"
#ifdef _OPENMP
#include <omp.h>
#endif /* _OPENMP */

#if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
#define CYTHON_WITHOUT_ASSERTIONS
#endif

typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
                const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;

#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 1
#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8)
#define __PYX_DEFAULT_STRING_ENCODING "utf8"
#define __Pyx_PyObject_FromString __Pyx_PyUnicode_FromString
#define __Pyx_PyObject_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#define __Pyx_uchar_cast(c) ((unsigned char)c)
#define __Pyx_long_cast(x) ((long)x)
#define __Pyx_fits_Py_ssize_t(v, type, is_signed)  (\
    (sizeof(type) < sizeof(Py_ssize_t))  ||\
    (sizeof(type) > sizeof(Py_ssize_t) &&\
          likely(v < (type)PY_SSIZE_T_MAX ||\
                 v == (type)PY_SSIZE_T_MAX)  &&\
          (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
                                v == (type)PY_SSIZE_T_MIN)))  ||\
    (sizeof(type) == sizeof(Py_ssize_t) &&\
          (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
                               v == (type)PY_SSIZE_T_MAX)))  )
static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
    return (size_t) i < (size_t) limit;
}
#if defined (__cplusplus) && __cplusplus >= 201103L
    #include <cstdlib>
    #define __Pyx_sst_abs(value) std::abs(value)
#elif SIZEOF_INT >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) abs(value)
#elif SIZEOF_LONG >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) labs(value)
#elif defined (_MSC_VER)
    #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define __Pyx_sst_abs(value) llabs(value)
#elif defined (__GNUC__)
    #define __Pyx_sst_abs(value) __builtin_llabs(value)
#else
    #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
#define __Pyx_PyBytes_FromString        PyBytes_FromString
#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
#if PY_MAJOR_VERSION < 3
    #define __Pyx_PyStr_FromString        __Pyx_PyBytes_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#else
    #define __Pyx_PyStr_FromString        __Pyx_PyUnicode_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#endif
#define __Pyx_PyBytes_AsWritableString(s)     ((char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableSString(s)    ((signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableUString(s)    ((unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsString(s)     ((const char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsSString(s)    ((const signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsUString(s)    ((const unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyObject_AsWritableString(s)    ((char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableSString(s)    ((signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableUString(s)    ((unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsSString(s)    ((const signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsUString(s)    ((const unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_FromCString(s)  __Pyx_PyObject_FromString((const char*)s)
#define __Pyx_PyBytes_FromCString(s)   __Pyx_PyBytes_FromString((const char*)s)
#define __Pyx_PyByteArray_FromCString(s)   __Pyx_PyByteArray_FromString((const char*)s)
#define __Pyx_PyStr_FromCString(s)     __Pyx_PyStr_FromString((const char*)s)
#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
    const Py_UNICODE *u_end = u;
    while (*u_end++) ;
    return (size_t)(u_end - u - 1);
}
#define __Pyx_PyUnicode_FromUnicode(u)       PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
#define __Pyx_PyUnicode_AsUnicode            PyUnicode_AsUnicode
#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
#define __Pyx_PySequence_Tuple(obj)\
    (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*);
#if CYTHON_ASSUME_SAFE_MACROS
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#else
#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
#endif
#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
#else
#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
#endif
#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    PyObject* ascii_chars_u = NULL;
    PyObject* ascii_chars_b = NULL;
    const char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    if (strcmp(default_encoding_c, "ascii") == 0) {
        __Pyx_sys_getdefaultencoding_not_ascii = 0;
    } else {
        char ascii_chars[128];
        int c;
        for (c = 0; c < 128; c++) {
            ascii_chars[c] = c;
        }
        __Pyx_sys_getdefaultencoding_not_ascii = 1;
        ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
        if (!ascii_chars_u) goto bad;
        ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
        if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
            PyErr_Format(
                PyExc_ValueError,
                "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
                default_encoding_c);
            goto bad;
        }
        Py_DECREF(ascii_chars_u);
        Py_DECREF(ascii_chars_b);
    }
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    Py_XDECREF(ascii_chars_u);
    Py_XDECREF(ascii_chars_b);
    return -1;
}
#endif
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
#else
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
static char* __PYX_DEFAULT_STRING_ENCODING;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
    if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
    strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    return -1;
}
#endif
#endif


/* Test for GCC > 2.95 */
#if defined(__GNUC__)     && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
  #define likely(x)   __builtin_expect(!!(x), 1)
  #define unlikely(x) __builtin_expect(!!(x), 0)
#else /* !__GNUC__ or GCC < 2.95 */
  #define likely(x)   (x)
  #define unlikely(x) (x)
#endif /* __GNUC__ */
static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }

static PyObject *__pyx_m = NULL;
static PyObject *__pyx_d;
static PyObject *__pyx_b;
static PyObject *__pyx_cython_runtime = NULL;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
static PyObject *__pyx_empty_unicode;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;

/* Header.proto */
#if !defined(CYTHON_CCOMPLEX)
  #if defined(__cplusplus)
    #define CYTHON_CCOMPLEX 1
  #elif defined(_Complex_I)
    #define CYTHON_CCOMPLEX 1
  #else
    #define CYTHON_CCOMPLEX 0
  #endif
#endif
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    #include <complex>
  #else
    #include <complex.h>
  #endif
#endif
#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
  #undef _Complex_I
  #define _Complex_I 1.0fj
#endif


static const char *__pyx_f[] = {
  "stringsource",
  "dysgu/graph.pyx",
  "__init__.pxd",
  "array.pxd",
  "type.pxd",
  "bool.pxd",
  "complex.pxd",
  "dysgu/map_set_utils.pxd",
  "libchtslib.pxd",
  "libcfaidx.pxd",
  "libcalignmentfile.pxd",
  "libcalignedsegment.pxd",
};
/* NoFastGil.proto */
#define __Pyx_PyGILState_Ensure PyGILState_Ensure
#define __Pyx_PyGILState_Release PyGILState_Release
#define __Pyx_FastGIL_Remember()
#define __Pyx_FastGIL_Forget()
#define __Pyx_FastGilFuncInit()

/* ForceInitThreads.proto */
#ifndef __PYX_FORCE_INIT_THREADS
  #define __PYX_FORCE_INIT_THREADS 0
#endif

/* MemviewSliceStruct.proto */
struct __pyx_memoryview_obj;
typedef struct {
  struct __pyx_memoryview_obj *memview;
  char *data;
  Py_ssize_t shape[8];
  Py_ssize_t strides[8];
  Py_ssize_t suboffsets[8];
} __Pyx_memviewslice;
#define __Pyx_MemoryView_Len(m)  (m.shape[0])

/* Atomics.proto */
#include <pythread.h>
#ifndef CYTHON_ATOMICS
    #define CYTHON_ATOMICS 1
#endif
#define __PYX_CYTHON_ATOMICS_ENABLED() CYTHON_ATOMICS
#define __pyx_atomic_int_type int
#if CYTHON_ATOMICS && (__GNUC__ >= 5 || (__GNUC__ == 4 &&\
                    (__GNUC_MINOR__ > 1 ||\
                    (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL__ >= 2))))
    #define __pyx_atomic_incr_aligned(value) __sync_fetch_and_add(value, 1)
    #define __pyx_atomic_decr_aligned(value) __sync_fetch_and_sub(value, 1)
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Using GNU atomics"
    #endif
#elif CYTHON_ATOMICS && defined(_MSC_VER) && CYTHON_COMPILING_IN_NOGIL
    #include <intrin.h>
    #undef __pyx_atomic_int_type
    #define __pyx_atomic_int_type long
    #pragma intrinsic (_InterlockedExchangeAdd)
    #define __pyx_atomic_incr_aligned(value) _InterlockedExchangeAdd(value, 1)
    #define __pyx_atomic_decr_aligned(value) _InterlockedExchangeAdd(value, -1)
    #ifdef __PYX_DEBUG_ATOMICS
        #pragma message ("Using MSVC atomics")
    #endif
#else
    #undef CYTHON_ATOMICS
    #define CYTHON_ATOMICS 0
    #ifdef __PYX_DEBUG_ATOMICS
        #warning "Not using atomics"
    #endif
#endif
typedef volatile __pyx_atomic_int_type __pyx_atomic_int;
#if CYTHON_ATOMICS
    #define __pyx_add_acquisition_count(memview)\
             __pyx_atomic_incr_aligned(__pyx_get_slice_count_pointer(memview))
    #define __pyx_sub_acquisition_count(memview)\
            __pyx_atomic_decr_aligned(__pyx_get_slice_count_pointer(memview))
#else
    #define __pyx_add_acquisition_count(memview)\
            __pyx_add_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
    #define __pyx_sub_acquisition_count(memview)\
            __pyx_sub_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
#endif

/* BufferFormatStructs.proto */
#define IS_UNSIGNED(type) (((type) -1) > 0)
struct __Pyx_StructField_;
#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
typedef struct {
  const char* name;
  struct __Pyx_StructField_* fields;
  size_t size;
  size_t arraysize[8];
  int ndim;
  char typegroup;
  char is_unsigned;
  int flags;
} __Pyx_TypeInfo;
typedef struct __Pyx_StructField_ {
  __Pyx_TypeInfo* type;
  const char* name;
  size_t offset;
} __Pyx_StructField;
typedef struct {
  __Pyx_StructField* field;
  size_t parent_offset;
} __Pyx_BufFmt_StackElem;
typedef struct {
  __Pyx_StructField root;
  __Pyx_BufFmt_StackElem* head;
  size_t fmt_offset;
  size_t new_count, enc_count;
  size_t struct_alignment;
  int is_complex;
  char enc_type;
  char new_packmode;
  char enc_packmode;
  char is_valid_array;
} __Pyx_BufFmt_Context;


/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":689
 * # in Cython to enable them only on the right systems.
 * 
 * ctypedef npy_int8       int8_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t
 */
typedef npy_int8 __pyx_t_5numpy_int8_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":690
 * 
 * ctypedef npy_int8       int8_t
 * ctypedef npy_int16      int16_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int32      int32_t
 * ctypedef npy_int64      int64_t
 */
typedef npy_int16 __pyx_t_5numpy_int16_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":691
 * ctypedef npy_int8       int8_t
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_int64      int64_t
 * #ctypedef npy_int96      int96_t
 */
typedef npy_int32 __pyx_t_5numpy_int32_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":692
 * ctypedef npy_int16      int16_t
 * ctypedef npy_int32      int32_t
 * ctypedef npy_int64      int64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_int96      int96_t
 * #ctypedef npy_int128     int128_t
 */
typedef npy_int64 __pyx_t_5numpy_int64_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":696
 * #ctypedef npy_int128     int128_t
 * 
 * ctypedef npy_uint8      uint8_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t
 */
typedef npy_uint8 __pyx_t_5numpy_uint8_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":697
 * 
 * ctypedef npy_uint8      uint8_t
 * ctypedef npy_uint16     uint16_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint32     uint32_t
 * ctypedef npy_uint64     uint64_t
 */
typedef npy_uint16 __pyx_t_5numpy_uint16_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":698
 * ctypedef npy_uint8      uint8_t
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uint64     uint64_t
 * #ctypedef npy_uint96     uint96_t
 */
typedef npy_uint32 __pyx_t_5numpy_uint32_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":699
 * ctypedef npy_uint16     uint16_t
 * ctypedef npy_uint32     uint32_t
 * ctypedef npy_uint64     uint64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_uint96     uint96_t
 * #ctypedef npy_uint128    uint128_t
 */
typedef npy_uint64 __pyx_t_5numpy_uint64_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":703
 * #ctypedef npy_uint128    uint128_t
 * 
 * ctypedef npy_float32    float32_t             # <<<<<<<<<<<<<<
 * ctypedef npy_float64    float64_t
 * #ctypedef npy_float80    float80_t
 */
typedef npy_float32 __pyx_t_5numpy_float32_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":704
 * 
 * ctypedef npy_float32    float32_t
 * ctypedef npy_float64    float64_t             # <<<<<<<<<<<<<<
 * #ctypedef npy_float80    float80_t
 * #ctypedef npy_float128   float128_t
 */
typedef npy_float64 __pyx_t_5numpy_float64_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":713
 * # The int types are mapped a bit surprising --
 * # numpy.int corresponds to 'l' and numpy.long to 'q'
 * ctypedef npy_long       int_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longlong   long_t
 * ctypedef npy_longlong   longlong_t
 */
typedef npy_long __pyx_t_5numpy_int_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":714
 * # numpy.int corresponds to 'l' and numpy.long to 'q'
 * ctypedef npy_long       int_t
 * ctypedef npy_longlong   long_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longlong   longlong_t
 * 
 */
typedef npy_longlong __pyx_t_5numpy_long_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":715
 * ctypedef npy_long       int_t
 * ctypedef npy_longlong   long_t
 * ctypedef npy_longlong   longlong_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_ulong      uint_t
 */
typedef npy_longlong __pyx_t_5numpy_longlong_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":717
 * ctypedef npy_longlong   longlong_t
 * 
 * ctypedef npy_ulong      uint_t             # <<<<<<<<<<<<<<
 * ctypedef npy_ulonglong  ulong_t
 * ctypedef npy_ulonglong  ulonglong_t
 */
typedef npy_ulong __pyx_t_5numpy_uint_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":718
 * 
 * ctypedef npy_ulong      uint_t
 * ctypedef npy_ulonglong  ulong_t             # <<<<<<<<<<<<<<
 * ctypedef npy_ulonglong  ulonglong_t
 * 
 */
typedef npy_ulonglong __pyx_t_5numpy_ulong_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":719
 * ctypedef npy_ulong      uint_t
 * ctypedef npy_ulonglong  ulong_t
 * ctypedef npy_ulonglong  ulonglong_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_intp       intp_t
 */
typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":721
 * ctypedef npy_ulonglong  ulonglong_t
 * 
 * ctypedef npy_intp       intp_t             # <<<<<<<<<<<<<<
 * ctypedef npy_uintp      uintp_t
 * 
 */
typedef npy_intp __pyx_t_5numpy_intp_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":722
 * 
 * ctypedef npy_intp       intp_t
 * ctypedef npy_uintp      uintp_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_double     float_t
 */
typedef npy_uintp __pyx_t_5numpy_uintp_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":724
 * ctypedef npy_uintp      uintp_t
 * 
 * ctypedef npy_double     float_t             # <<<<<<<<<<<<<<
 * ctypedef npy_double     double_t
 * ctypedef npy_longdouble longdouble_t
 */
typedef npy_double __pyx_t_5numpy_float_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":725
 * 
 * ctypedef npy_double     float_t
 * ctypedef npy_double     double_t             # <<<<<<<<<<<<<<
 * ctypedef npy_longdouble longdouble_t
 * 
 */
typedef npy_double __pyx_t_5numpy_double_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":726
 * ctypedef npy_double     float_t
 * ctypedef npy_double     double_t
 * ctypedef npy_longdouble longdouble_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_cfloat      cfloat_t
 */
typedef npy_longdouble __pyx_t_5numpy_longdouble_t;

/* "dysgu/graph.pyx":52
 * ctypedef cpp_pair[int, cpp_item] event_item
 * ctypedef cpp_pair[long, int] cpp_long_pair
 * ctypedef long int long_int             # <<<<<<<<<<<<<<
 * 
 * ctypedef PairedEndScoper PairedEndScoper_t
 */
typedef long __pyx_t_5dysgu_5graph_long_int;
/* Declarations.proto */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    typedef ::std::complex< float > __pyx_t_float_complex;
  #else
    typedef float _Complex __pyx_t_float_complex;
  #endif
#else
    typedef struct { float real, imag; } __pyx_t_float_complex;
#endif
static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);

/* Declarations.proto */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    typedef ::std::complex< double > __pyx_t_double_complex;
  #else
    typedef double _Complex __pyx_t_double_complex;
  #endif
#else
    typedef struct { double real, imag; } __pyx_t_double_complex;
#endif
static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);


/*--- Type declarations ---*/
#ifndef _ARRAYARRAY_H
struct arrayobject;
typedef struct arrayobject arrayobject;
#endif
struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree;
struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph;
struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph;
struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap;
struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet;
struct __pyx_obj_5dysgu_13map_set_utils_EventResult;
struct __pyx_obj_5pysam_10libchtslib_HTSFile;
struct __pyx_obj_5pysam_9libcfaidx_FastaFile;
struct __pyx_obj_5pysam_9libcfaidx_FastqProxy;
struct __pyx_obj_5pysam_9libcfaidx_FastxRecord;
struct __pyx_obj_5pysam_9libcfaidx_FastxFile;
struct __pyx_obj_5pysam_9libcfaidx_FastqFile;
struct __pyx_obj_5pysam_9libcfaidx_Fastafile;
struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader;
struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAllRefs;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnRegion;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAllRefs;
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAll;
struct __pyx_obj_5pysam_17libcalignmentfile_IndexedReads;
struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment;
struct __pyx_obj_5pysam_18libcalignedsegment_PileupColumn;
struct __pyx_obj_5pysam_18libcalignedsegment_PileupRead;
struct __pyx_obj_5dysgu_5graph_ClipScoper;
struct __pyx_obj_5dysgu_5graph_PairedEndScoper;
struct __pyx_obj_5dysgu_5graph_TemplateEdges;
struct __pyx_obj_5dysgu_5graph_NodeName;
struct __pyx_obj_5dysgu_5graph_NodeToName;
struct __pyx_array_obj;
struct __pyx_MemviewEnum_obj;
struct __pyx_memoryview_obj;
struct __pyx_memoryviewslice_obj;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":728
 * ctypedef npy_longdouble longdouble_t
 * 
 * ctypedef npy_cfloat      cfloat_t             # <<<<<<<<<<<<<<
 * ctypedef npy_cdouble     cdouble_t
 * ctypedef npy_clongdouble clongdouble_t
 */
typedef npy_cfloat __pyx_t_5numpy_cfloat_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":729
 * 
 * ctypedef npy_cfloat      cfloat_t
 * ctypedef npy_cdouble     cdouble_t             # <<<<<<<<<<<<<<
 * ctypedef npy_clongdouble clongdouble_t
 * 
 */
typedef npy_cdouble __pyx_t_5numpy_cdouble_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":730
 * ctypedef npy_cfloat      cfloat_t
 * ctypedef npy_cdouble     cdouble_t
 * ctypedef npy_clongdouble clongdouble_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef npy_cdouble     complex_t
 */
typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":732
 * ctypedef npy_clongdouble clongdouble_t
 * 
 * ctypedef npy_cdouble     complex_t             # <<<<<<<<<<<<<<
 * 
 * cdef inline object PyArray_MultiIterNew1(a):
 */
typedef npy_cdouble __pyx_t_5numpy_complex_t;

/* "dysgu/map_set_utils.pxd":16
 * 
 * 
 * ctypedef enum ReadEnum_t:             # <<<<<<<<<<<<<<
 *     DISCORDANT = 0
 *     SPLIT = 1
 */
enum __pyx_t_5dysgu_13map_set_utils_ReadEnum_t {
  __pyx_e_5dysgu_13map_set_utils_DISCORDANT = 0,
  __pyx_e_5dysgu_13map_set_utils_SPLIT = 1,
  __pyx_e_5dysgu_13map_set_utils_DELETION = 2,
  __pyx_e_5dysgu_13map_set_utils_INSERTION = 3,
  __pyx_e_5dysgu_13map_set_utils_BREAKEND = 4
};
typedef enum __pyx_t_5dysgu_13map_set_utils_ReadEnum_t __pyx_t_5dysgu_13map_set_utils_ReadEnum_t;

/* "dysgu/map_set_utils.pxd":12
 * from libc.stdint cimport uint64_t, int32_t, int8_t
 * 
 * ctypedef cpp_vector[int] int_vec_t             # <<<<<<<<<<<<<<
 * ctypedef cpp_pair[int, int] get_val_result
 * 
 */
typedef std::vector<int>  __pyx_t_5dysgu_13map_set_utils_int_vec_t;

/* "dysgu/map_set_utils.pxd":13
 * 
 * ctypedef cpp_vector[int] int_vec_t
 * ctypedef cpp_pair[int, int] get_val_result             # <<<<<<<<<<<<<<
 * 
 * 
 */
typedef std::pair<int,int>  __pyx_t_5dysgu_13map_set_utils_get_val_result;
struct __pyx_opt_args_5pysam_9libcfaidx_10FastqProxy_get_quality_array;
struct __pyx_opt_args_5pysam_9libcfaidx_11FastxRecord_get_quality_array;

/* "pysam/libcfaidx.pxd":49
 *     cdef cython.str to_string(self)
 *     cdef cython.str tostring(self)
 *     cpdef array.array get_quality_array(self, int offset=*)             # <<<<<<<<<<<<<<
 * 
 * 
 */
struct __pyx_opt_args_5pysam_9libcfaidx_10FastqProxy_get_quality_array {
  int __pyx_n;
  int offset;
};

/* "pysam/libcfaidx.pxd":59
 *     cdef cython.str to_string(self)
 *     cdef cython.str tostring(self)
 *     cpdef array.array get_quality_array(self, int offset=*)             # <<<<<<<<<<<<<<
 * 
 * cdef class FastxFile:
 */
struct __pyx_opt_args_5pysam_9libcfaidx_11FastxRecord_get_quality_array {
  int __pyx_n;
  int offset;
};
struct __pyx_t_5pysam_17libcalignmentfile___iterdata;
typedef struct __pyx_t_5pysam_17libcalignmentfile___iterdata __pyx_t_5pysam_17libcalignmentfile___iterdata;
struct __pyx_opt_args_5pysam_17libcalignmentfile_14IteratorColumn__setup_iterator;

/* "pysam/libcalignmentfile.pxd":24
 * # Utility types
 * 
 * ctypedef struct __iterdata:             # <<<<<<<<<<<<<<
 *     htsFile * htsfile
 *     bam_hdr_t * header
 */
struct __pyx_t_5pysam_17libcalignmentfile___iterdata {
  htsFile *htsfile;
  bam_hdr_t *header;
  hts_itr_t *iter;
  faidx_t *fastafile;
  int tid;
  char *seq;
  int seq_len;
  int min_mapping_quality;
  int flag_require;
  int flag_filter;
  int compute_baq;
  int redo_baq;
  int ignore_orphans;
  int adjust_capq_threshold;
};

/* "pysam/libcalignmentfile.pxd":120
 *     cdef int cnext(self)
 *     cdef char * get_sequence(self)
 *     cdef _setup_iterator(self,             # <<<<<<<<<<<<<<
 *                          int tid,
 *                          int start,
 */
struct __pyx_opt_args_5pysam_17libcalignmentfile_14IteratorColumn__setup_iterator {
  int __pyx_n;
  int multiple_iterators;
};
struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_set_tag;
struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_get_tag;
struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_tostring;

/* "pysam/libcalignedsegment.pxd":30
 * 
 * from pysam.libcalignmentfile cimport AlignmentFile, AlignmentHeader
 * ctypedef AlignmentFile AlignmentFile_t             # <<<<<<<<<<<<<<
 * 
 * 
 */
typedef struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *__pyx_t_5pysam_18libcalignedsegment_AlignmentFile_t;

/* "pysam/libcalignedsegment.pxd":50
 *     # add an alignment tag with value to the AlignedSegment
 *     # an existing tag of the same name will be replaced.
 *     cpdef set_tag(self, tag, value, value_type=?, replace=?)             # <<<<<<<<<<<<<<
 * 
 *     # get an alignment tag from the AlignedSegment
 */
struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_set_tag {
  int __pyx_n;
  PyObject *value_type;
  PyObject *replace;
};

/* "pysam/libcalignedsegment.pxd":53
 * 
 *     # get an alignment tag from the AlignedSegment
 *     cpdef get_tag(self, tag, with_value_type=?)             # <<<<<<<<<<<<<<
 * 
 *     # return true if tag exists
 */
struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_get_tag {
  int __pyx_n;
  PyObject *with_value_type;
};

/* "pysam/libcalignedsegment.pxd":62
 * 
 *     # returns a valid sam alignment string (deprecated)
 *     cpdef tostring(self, htsfile=*)             # <<<<<<<<<<<<<<
 * 
 * 
 */
struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_tostring {
  int __pyx_n;
  PyObject *htsfile;
};
struct __pyx_t_5dysgu_5graph_LocalVal;
struct __pyx_t_5dysgu_5graph_CigarEvent;
struct __pyx_opt_args_5dysgu_5graph_construct_graph;

/* "dysgu/graph.pyx":64
 * # 3 = insertion event contained within read
 * # 4 = mate-pair is unmapped, or supplementary uninformative, probably an insertion
 * ctypedef enum ReadEnum_t:             # <<<<<<<<<<<<<<
 *     DISCORDANT = 0
 *     SPLIT = 1
 */
enum __pyx_t_5dysgu_5graph_ReadEnum_t {
  __pyx_e_5dysgu_5graph_DISCORDANT = 0,
  __pyx_e_5dysgu_5graph_SPLIT = 1,
  __pyx_e_5dysgu_5graph_DELETION = 2,
  __pyx_e_5dysgu_5graph_INSERTION = 3,
  __pyx_e_5dysgu_5graph_BREAKEND = 4
};
typedef enum __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_t_5dysgu_5graph_ReadEnum_t;

/* "dysgu/graph.pyx":42
 * from dysgu.map_set_utils import echo  # for debugging
 * 
 * ctypedef cpp_pair[int, int] cpp_item             # <<<<<<<<<<<<<<
 * 
 * ctypedef map_set_utils.Py_IntSet Py_IntSet
 */
typedef std::pair<int,int>  __pyx_t_5dysgu_5graph_cpp_item;

/* "dysgu/graph.pyx":44
 * ctypedef cpp_pair[int, int] cpp_item
 * 
 * ctypedef map_set_utils.Py_IntSet Py_IntSet             # <<<<<<<<<<<<<<
 * ctypedef map_set_utils.Py_Int2IntMap Py_Int2IntMap
 * 
 */
typedef struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet *__pyx_t_5dysgu_5graph_Py_IntSet;

/* "dysgu/graph.pyx":45
 * 
 * ctypedef map_set_utils.Py_IntSet Py_IntSet
 * ctypedef map_set_utils.Py_Int2IntMap Py_Int2IntMap             # <<<<<<<<<<<<<<
 * 
 * ctypedef cpp_map[int, cpp_item] ScopeItem_t
 */
typedef struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *__pyx_t_5dysgu_5graph_Py_Int2IntMap;

/* "dysgu/graph.pyx":47
 * ctypedef map_set_utils.Py_Int2IntMap Py_Int2IntMap
 * 
 * ctypedef cpp_map[int, cpp_item] ScopeItem_t             # <<<<<<<<<<<<<<
 * ctypedef vector[ScopeItem_t] ForwardScope_t
 * 
 */
typedef std::multimap<int,__pyx_t_5dysgu_5graph_cpp_item>  __pyx_t_5dysgu_5graph_ScopeItem_t;

/* "dysgu/graph.pyx":48
 * 
 * ctypedef cpp_map[int, cpp_item] ScopeItem_t
 * ctypedef vector[ScopeItem_t] ForwardScope_t             # <<<<<<<<<<<<<<
 * 
 * ctypedef cpp_pair[int, cpp_item] event_item
 */
typedef std::vector<__pyx_t_5dysgu_5graph_ScopeItem_t>  __pyx_t_5dysgu_5graph_ForwardScope_t;

/* "dysgu/graph.pyx":50
 * ctypedef vector[ScopeItem_t] ForwardScope_t
 * 
 * ctypedef cpp_pair[int, cpp_item] event_item             # <<<<<<<<<<<<<<
 * ctypedef cpp_pair[long, int] cpp_long_pair
 * ctypedef long int long_int
 */
typedef std::pair<int,__pyx_t_5dysgu_5graph_cpp_item>  __pyx_t_5dysgu_5graph_event_item;

/* "dysgu/graph.pyx":51
 * 
 * ctypedef cpp_pair[int, cpp_item] event_item
 * ctypedef cpp_pair[long, int] cpp_long_pair             # <<<<<<<<<<<<<<
 * ctypedef long int long_int
 * 
 */
typedef std::pair<long,int>  __pyx_t_5dysgu_5graph_cpp_long_pair;

/* "dysgu/graph.pyx":54
 * ctypedef long int long_int
 * 
 * ctypedef PairedEndScoper PairedEndScoper_t             # <<<<<<<<<<<<<<
 * ctypedef TemplateEdges TemplateEdges_t
 * ctypedef NodeToName NodeToName_t
 */
typedef struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_t_5dysgu_5graph_PairedEndScoper_t;

/* "dysgu/graph.pyx":55
 * 
 * ctypedef PairedEndScoper PairedEndScoper_t
 * ctypedef TemplateEdges TemplateEdges_t             # <<<<<<<<<<<<<<
 * ctypedef NodeToName NodeToName_t
 * ctypedef ClipScoper ClipScoper_t
 */
typedef struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_t_5dysgu_5graph_TemplateEdges_t;

/* "dysgu/graph.pyx":56
 * ctypedef PairedEndScoper PairedEndScoper_t
 * ctypedef TemplateEdges TemplateEdges_t
 * ctypedef NodeToName NodeToName_t             # <<<<<<<<<<<<<<
 * ctypedef ClipScoper ClipScoper_t
 * 
 */
typedef struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_t_5dysgu_5graph_NodeToName_t;

/* "dysgu/graph.pyx":57
 * ctypedef TemplateEdges TemplateEdges_t
 * ctypedef NodeToName NodeToName_t
 * ctypedef ClipScoper ClipScoper_t             # <<<<<<<<<<<<<<
 * 
 * 
 */
typedef struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_t_5dysgu_5graph_ClipScoper_t;

/* "dysgu/graph.pyx":308
 * 
 * 
 * cdef struct LocalVal:             # <<<<<<<<<<<<<<
 *     int chrom2
 *     int pos2
 */
struct __pyx_t_5dysgu_5graph_LocalVal {
  int chrom2;
  int pos2;
  int node_name;
  int length_from_cigar;
  __pyx_t_5dysgu_5graph_ReadEnum_t read_enum;
};

/* "dysgu/graph.pyx":1104
 * 
 * 
 * cdef struct CigarEvent:             # <<<<<<<<<<<<<<
 *     int opp
 *     int cigar_index
 */
struct __pyx_t_5dysgu_5graph_CigarEvent {
  int opp;
  int cigar_index;
  int event_pos;
  int pos2;
  int length;
  int cigar_skip;
  __pyx_t_5dysgu_5graph_ReadEnum_t read_enum;
};

/* "dysgu/graph.pyx":1252
 * 
 * 
 * cpdef tuple construct_graph(genome_scanner, infile, int max_dist, int clustering_dist, int k=16, int m=7, int clip_l=21,             # <<<<<<<<<<<<<<
 *                             int min_sv_size=30,
 *                             int minimizer_support_thresh=2, int minimizer_breadth=3,
 */
struct __pyx_opt_args_5dysgu_5graph_construct_graph {
  int __pyx_n;
  int k;
  int m;
  int clip_l;
  int min_sv_size;
  int minimizer_support_thresh;
  int minimizer_breadth;
  int minimizer_dist;
  int mapq_thresh;
  PyObject *debug;
  PyObject *procs;
  int paired_end;
  int read_length;
  int contigs;
  float norm_thresh;
  float spd_thresh;
  int mm_only;
  PyObject *sites;
  int trust_ins_len;
  PyObject *low_mem;
  PyObject *temp_dir;
};

/* "dysgu/map_set_utils.pxd":99
 * 
 * 
 * cdef class Py_BasicIntervalTree:             # <<<<<<<<<<<<<<
 *     cdef BasicIntervalTree *thisptr
 * 
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_BasicIntervalTree *__pyx_vtab;
  BasicIntervalTree *thisptr;
};


/* "dysgu/map_set_utils.pxd":125
 * 
 * 
 * cdef class Py_DiGraph:             # <<<<<<<<<<<<<<
 *     """DiGraph, no weight"""
 *     cdef DiGraph *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_DiGraph *__pyx_vtab;
  DiGraph *thisptr;
};


/* "dysgu/map_set_utils.pxd":170
 * 
 * 
 * cdef class Py_SimpleGraph:             # <<<<<<<<<<<<<<
 *     """Graph"""
 *     cdef SimpleGraph *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_SimpleGraph *__pyx_vtab;
  SimpleGraph *thisptr;
};


/* "dysgu/map_set_utils.pxd":196
 * 
 * 
 * cdef class Py_Int2IntMap:             # <<<<<<<<<<<<<<
 *     """Fast integer to integer unordered map using tsl::robin-map"""
 *     cdef Int2IntMap *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *__pyx_vtab;
  Int2IntMap *thisptr;
};


/* "dysgu/map_set_utils.pxd":218
 * 
 * 
 * cdef class Py_IntSet:             # <<<<<<<<<<<<<<
 *     """Fast 32 bit int set using tsl::robin-set"""
 *     cdef IntSet *thisptr
 */
struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_IntSet *__pyx_vtab;
  IntSet *thisptr;
};


/* "dysgu/map_set_utils.pxd":317
 * 
 * 
 * cdef class EventResult:             # <<<<<<<<<<<<<<
 *     """Data holder for classifying alignments into SV types"""
 *     cdef public int32_t contig_ref_start, contig_ref_end, contig2_ref_start, contig2_ref_end, contig_lc, contig_rc, contig2_lc, contig2_rc, \
 */
struct __pyx_obj_5dysgu_13map_set_utils_EventResult {
  PyObject_HEAD
  int32_t contig_ref_start;
  int32_t contig_ref_end;
  int32_t contig2_ref_start;
  int32_t contig2_ref_end;
  int32_t contig_lc;
  int32_t contig_rc;
  int32_t contig2_lc;
  int32_t contig2_rc;
  int32_t grp_id;
  int32_t event_id;
  int32_t n_expansion;
  int32_t stride;
  int32_t ref_poly_bases;
  __pyx_t_5numpy_float32_t contig_left_weight;
  __pyx_t_5numpy_float32_t contig_right_weight;
  __pyx_t_5numpy_float32_t contig2_left_weight;
  __pyx_t_5numpy_float32_t contig2_right_weight;
  __pyx_t_5numpy_float32_t ref_rep;
  __pyx_t_5numpy_float32_t compress;
  int32_t su;
  int32_t pe;
  int32_t supp;
  int32_t sc;
  int32_t NP;
  int32_t maxASsupp;
  int32_t plus;
  int32_t minus;
  int32_t spanning;
  int32_t double_clips;
  int32_t n_unmapped_mates;
  int32_t n_small_tlen;
  int32_t bnd;
  int32_t ras;
  int32_t fas;
  int32_t cipos95A;
  int32_t cipos95B;
  __pyx_t_5numpy_float32_t DP;
  __pyx_t_5numpy_float32_t DApri;
  __pyx_t_5numpy_float32_t DN;
  __pyx_t_5numpy_float32_t NMpri;
  __pyx_t_5numpy_float32_t DAsupp;
  __pyx_t_5numpy_float32_t NMsupp;
  __pyx_t_5numpy_float32_t MAPQpri;
  __pyx_t_5numpy_float32_t MAPQsupp;
  __pyx_t_5numpy_float32_t NMbase;
  __pyx_t_5numpy_float32_t n_sa;
  __pyx_t_5numpy_float32_t n_xa;
  __pyx_t_5numpy_float32_t n_gaps;
  int32_t posA;
  int32_t posB;
  int32_t svlen;
  int32_t query_gap;
  int32_t query_overlap;
  int32_t block_edge;
  int32_t ref_bases;
  int32_t remap_score;
  int32_t bad_clip_count;
  int32_t remap_ed;
  int32_t n_in_grp;
  __pyx_t_5numpy_float32_t jitter;
  __pyx_t_5numpy_float32_t sqc;
  __pyx_t_5numpy_float32_t scw;
  __pyx_t_5numpy_float32_t clip_qual_ratio;
  __pyx_t_5numpy_float32_t outer_cn;
  __pyx_t_5numpy_float32_t inner_cn;
  __pyx_t_5numpy_float32_t fcc;
  __pyx_t_5numpy_float32_t rep;
  __pyx_t_5numpy_float32_t rep_sc;
  __pyx_t_5numpy_float32_t gc;
  __pyx_t_5numpy_float32_t neigh;
  __pyx_t_5numpy_float32_t neigh10kb;
  __pyx_t_5numpy_float32_t raw_reads_10kb;
  __pyx_t_5numpy_float32_t mcov;
  __pyx_t_5numpy_float32_t strand_binom_t;
  int preciseA;
  int preciseB;
  int linked;
  int modified;
  int remapped;
  int8_t svlen_precise;
  PyObject *contig;
  PyObject *contig2;
  PyObject *svtype;
  PyObject *join_type;
  PyObject *chrA;
  PyObject *chrB;
  PyObject *exp_seq;
  PyObject *sample;
  PyObject *type;
  PyObject *partners;
  PyObject *GQ;
  PyObject *GT;
  PyObject *kind;
  PyObject *ref_seq;
  PyObject *variant_seq;
  PyObject *left_ins_seq;
  PyObject *right_ins_seq;
  PyObject *site_info;
};


/* "pysam/libchtslib.pxd":2680
 * 
 * 
 * cdef class HTSFile(object):             # <<<<<<<<<<<<<<
 *     cdef          htsFile *htsfile       # pointer to htsFile structure
 *     cdef          int64_t start_offset   # BGZF offset of first record
 */
struct __pyx_obj_5pysam_10libchtslib_HTSFile {
  PyObject_HEAD
  struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtab;
  htsFile *htsfile;
  int64_t start_offset;
  PyObject *filename;
  PyObject *mode;
  PyObject *threads;
  PyObject *index_filename;
  int is_stream;
  int is_remote;
  int duplicate_filehandle;
};


/* "pysam/libcfaidx.pxd":37
 *                     int * dret)
 * 
 * cdef class FastaFile:             # <<<<<<<<<<<<<<
 *     cdef bint is_remote
 *     cdef object _filename, _references, _lengths, reference2length
 */
struct __pyx_obj_5pysam_9libcfaidx_FastaFile {
  PyObject_HEAD
  struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile *__pyx_vtab;
  int is_remote;
  PyObject *_filename;
  PyObject *_references;
  PyObject *_lengths;
  PyObject *reference2length;
  faidx_t *fastafile;
};


/* "pysam/libcfaidx.pxd":45
 * 
 * 
 * cdef class FastqProxy:             # <<<<<<<<<<<<<<
 *     cdef kseq_t * _delegate
 *     cdef cython.str to_string(self)
 */
struct __pyx_obj_5pysam_9libcfaidx_FastqProxy {
  PyObject_HEAD
  struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy *__pyx_vtab;
  kseq_t *_delegate;
};


/* "pysam/libcfaidx.pxd":52
 * 
 * 
 * cdef class FastxRecord:             # <<<<<<<<<<<<<<
 *     """
 *     Python container for pysam.libcfaidx.FastqProxy with persistence.
 */
struct __pyx_obj_5pysam_9libcfaidx_FastxRecord {
  PyObject_HEAD
  struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord *__pyx_vtab;
  PyObject *comment;
  PyObject *quality;
  PyObject *sequence;
  PyObject *name;
};


/* "pysam/libcfaidx.pxd":61
 *     cpdef array.array get_quality_array(self, int offset=*)
 * 
 * cdef class FastxFile:             # <<<<<<<<<<<<<<
 *     cdef object _filename
 *     cdef BGZF * fastqfile
 */
struct __pyx_obj_5pysam_9libcfaidx_FastxFile {
  PyObject_HEAD
  struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile *__pyx_vtab;
  PyObject *_filename;
  BGZF *fastqfile;
  kseq_t *entry;
  int persist;
  int is_remote;
};


/* "pysam/libcfaidx.pxd":73
 * 
 * # Compatibility Layer for pysam 0.8.1
 * cdef class FastqFile(FastxFile):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */
struct __pyx_obj_5pysam_9libcfaidx_FastqFile {
  struct __pyx_obj_5pysam_9libcfaidx_FastxFile __pyx_base;
};


/* "pysam/libcfaidx.pxd":78
 * 
 * # Compatibility Layer for pysam < 0.8
 * cdef class Fastafile(FastaFile):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */
struct __pyx_obj_5pysam_9libcfaidx_Fastafile {
  struct __pyx_obj_5pysam_9libcfaidx_FastaFile __pyx_base;
};


/* "pysam/libcalignmentfile.pxd":41
 * 
 * 
 * cdef class AlignmentHeader(object):             # <<<<<<<<<<<<<<
 *     cdef bam_hdr_t *ptr
 * 
 */
struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader {
  PyObject_HEAD
  bam_hdr_t *ptr;
};


/* "pysam/libcalignmentfile.pxd":44
 *     cdef bam_hdr_t *ptr
 * 
 * cdef class AlignmentFile(HTSFile):             # <<<<<<<<<<<<<<
 *     cdef readonly object reference_filename
 *     cdef readonly AlignmentHeader header
 */
struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile {
  struct __pyx_obj_5pysam_10libchtslib_HTSFile __pyx_base;
  PyObject *reference_filename;
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header;
  hts_idx_t *index;
  bam1_t *b;
};


/* "pysam/libcalignmentfile.pxd":61
 * 
 * 
 * cdef class IteratorRow:             # <<<<<<<<<<<<<<
 *     cdef int retval
 *     cdef bam1_t * b
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow {
  PyObject_HEAD
  int retval;
  bam1_t *b;
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *samfile;
  htsFile *htsfile;
  hts_idx_t *index;
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header;
  int owns_samfile;
};


/* "pysam/libcalignmentfile.pxd":71
 * 
 * 
 * cdef class IteratorRowRegion(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef hts_itr_t * iter
 *     cdef bam1_t * getCurrent(self)
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base;
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion *__pyx_vtab;
  hts_itr_t *iter;
};


/* "pysam/libcalignmentfile.pxd":77
 * 
 * 
 * cdef class IteratorRowHead(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef int max_rows
 *     cdef int current_row
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base;
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead *__pyx_vtab;
  int max_rows;
  int current_row;
};


/* "pysam/libcalignmentfile.pxd":84
 * 
 * 
 * cdef class IteratorRowAll(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef bam1_t * getCurrent(self)
 *     cdef int cnext(self)
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base;
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll *__pyx_vtab;
};


/* "pysam/libcalignmentfile.pxd":89
 * 
 * 
 * cdef class IteratorRowAllRefs(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef int         tid
 *     cdef IteratorRowRegion rowiter
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAllRefs {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base;
  int tid;
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *rowiter;
};


/* "pysam/libcalignmentfile.pxd":94
 * 
 * 
 * cdef class IteratorRowSelection(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef int current_pos
 *     cdef positions
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow __pyx_base;
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection *__pyx_vtab;
  int current_pos;
  PyObject *positions;
};


/* "pysam/libcalignmentfile.pxd":101
 * 
 * 
 * cdef class IteratorColumn:             # <<<<<<<<<<<<<<
 * 
 *     # result of the last plbuf_push
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn {
  PyObject_HEAD
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn *__pyx_vtab;
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *iter;
  int tid;
  int pos;
  int n_plp;
  uint32_t min_base_quality;
  bam_pileup1_t const *plp;
  bam_mplp_t pileup_iter;
  __pyx_t_5pysam_17libcalignmentfile___iterdata iterdata;
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *samfile;
  struct __pyx_obj_5pysam_9libcfaidx_FastaFile *fastafile;
  PyObject *stepper;
  int max_depth;
  int ignore_overlaps;
};


/* "pysam/libcalignmentfile.pxd":133
 * 
 * 
 * cdef class IteratorColumnRegion(IteratorColumn):             # <<<<<<<<<<<<<<
 *     cdef int start
 *     cdef int stop
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnRegion {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn __pyx_base;
  int start;
  int stop;
  int truncate;
};


/* "pysam/libcalignmentfile.pxd":139
 * 
 * 
 * cdef class IteratorColumnAllRefs(IteratorColumn):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAllRefs {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn __pyx_base;
};


/* "pysam/libcalignmentfile.pxd":143
 * 
 * 
 * cdef class IteratorColumnAll(IteratorColumn):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAll {
  struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn __pyx_base;
};


/* "pysam/libcalignmentfile.pxd":147
 * 
 * 
 * cdef class IndexedReads:             # <<<<<<<<<<<<<<
 *     cdef AlignmentFile samfile
 *     cdef htsFile * htsfile
 */
struct __pyx_obj_5pysam_17libcalignmentfile_IndexedReads {
  PyObject_HEAD
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *samfile;
  htsFile *htsfile;
  PyObject *index;
  int owns_samfile;
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header;
};


/* "pysam/libcalignedsegment.pxd":34
 * 
 * # Note: need to declare all C fields and methods here
 * cdef class AlignedSegment:             # <<<<<<<<<<<<<<
 * 
 *     # object that this AlignedSegment represents
 */
struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment {
  PyObject_HEAD
  struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment *__pyx_vtab;
  bam1_t *_delegate;
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header;
  PyObject *cache_query_qualities;
  PyObject *cache_query_alignment_qualities;
  PyObject *cache_query_sequence;
  PyObject *cache_query_alignment_sequence;
};


/* "pysam/libcalignedsegment.pxd":65
 * 
 * 
 * cdef class PileupColumn:             # <<<<<<<<<<<<<<
 *     cdef const bam_pileup1_t ** plp
 *     cdef int tid
 */
struct __pyx_obj_5pysam_18libcalignedsegment_PileupColumn {
  PyObject_HEAD
  bam_pileup1_t const **plp;
  int tid;
  int pos;
  int n_pu;
  struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader *header;
  uint32_t min_base_quality;
  kstring_t buf;
  char *reference_sequence;
};


/* "pysam/libcalignedsegment.pxd":75
 *     cdef char * reference_sequence
 * 
 * cdef class PileupRead:             # <<<<<<<<<<<<<<
 *     cdef int32_t  _qpos
 *     cdef AlignedSegment _alignment
 */
struct __pyx_obj_5pysam_18libcalignedsegment_PileupRead {
  PyObject_HEAD
  int32_t _qpos;
  struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *_alignment;
  int _indel;
  int _level;
  uint32_t _is_del;
  uint32_t _is_head;
  uint32_t _is_tail;
  uint32_t _is_refskip;
};


/* "dysgu/graph.pyx":119
 * 
 * 
 * cdef class ClipScoper:             # <<<<<<<<<<<<<<
 *     # todo sort out types; use uint64_t instead of long
 *     # first in pair is chrom position, second is node name
 */
struct __pyx_obj_5dysgu_5graph_ClipScoper {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *__pyx_vtab;
  std::deque<std::pair<int,int> >  scope_left;
  std::deque<std::pair<int,int> >  scope_right;
  MinimizerTable read_minimizers_left;
  MinimizerTable read_minimizers_right;
  robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  clip_table_left;
  robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  clip_table_right;
  int max_dist;
  int k;
  int w;
  int clip_length;
  int current_chrom;
  int minimizer_support_thresh;
  int minimizer_matches;
  float target_density;
  float upper_bound_n_minimizers;
  int n_local_minimizers_left;
  int n_local_minimizers_right;
  PyObject *rds_clip;
  int minimizer_mode;
};


/* "dysgu/graph.pyx":326
 * 
 * 
 * cdef class PairedEndScoper:             # <<<<<<<<<<<<<<
 * 
 *     cdef int clst_dist
 */
struct __pyx_obj_5dysgu_5graph_PairedEndScoper {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper *__pyx_vtab;
  int clst_dist;
  int max_dist;
  int local_chrom;
  std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal>  loci;
  std::vector<std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> >  chrom_scope;
  float norm;
  float thresh;
  int paired_end;
};


/* "dysgu/graph.pyx":545
 * 
 * 
 * cdef class TemplateEdges:             # <<<<<<<<<<<<<<
 *     cdef public unordered_map[string, vector[int]] templates_s  # robin map was buggy for iterating
 *     def __init__(self):
 */
struct __pyx_obj_5dysgu_5graph_TemplateEdges {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_5graph_TemplateEdges *__pyx_vtab;
  std::unordered_map<std::string,std::vector<int> >  templates_s;
};


/* "dysgu/graph.pyx":631
 * 
 * @cython.auto_pickle(True)
 * cdef class NodeName:             # <<<<<<<<<<<<<<
 *     cdef public uint64_t hash_name
 *     cdef public uint64_t tell
 */
struct __pyx_obj_5dysgu_5graph_NodeName {
  PyObject_HEAD
  uint64_t hash_name;
  uint64_t tell;
  uint32_t pos;
  int32_t cigar_index;
  uint32_t event_pos;
  uint16_t flag;
  uint16_t chrom;
};


/* "dysgu/graph.pyx":651
 *     #     return self.h, self.f, self.p, self.c, self.t, self.cigar_index, self.event_pos
 * 
 * cdef class NodeToName:             # <<<<<<<<<<<<<<
 *     # Index these vectors to get the unique 'template_name'
 *     cdef vector[uint64_t] h
 */
struct __pyx_obj_5dysgu_5graph_NodeToName {
  PyObject_HEAD
  struct __pyx_vtabstruct_5dysgu_5graph_NodeToName *__pyx_vtab;
  std::vector<uint64_t>  h;
  std::vector<uint16_t>  f;
  std::vector<uint32_t>  p;
  std::vector<uint16_t>  c;
  std::vector<uint64_t>  t;
  std::vector<int32_t>  cigar_index;
  std::vector<uint32_t>  event_pos;
};


/* "View.MemoryView":106
 * 
 * @cname("__pyx_array")
 * cdef class array:             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */
struct __pyx_array_obj {
  PyObject_HEAD
  struct __pyx_vtabstruct_array *__pyx_vtab;
  char *data;
  Py_ssize_t len;
  char *format;
  int ndim;
  Py_ssize_t *_shape;
  Py_ssize_t *_strides;
  Py_ssize_t itemsize;
  PyObject *mode;
  PyObject *_format;
  void (*callback_free_data)(void *);
  int free_data;
  int dtype_is_object;
};


/* "View.MemoryView":280
 * 
 * @cname('__pyx_MemviewEnum')
 * cdef class Enum(object):             # <<<<<<<<<<<<<<
 *     cdef object name
 *     def __init__(self, name):
 */
struct __pyx_MemviewEnum_obj {
  PyObject_HEAD
  PyObject *name;
};


/* "View.MemoryView":331
 * 
 * @cname('__pyx_memoryview')
 * cdef class memoryview(object):             # <<<<<<<<<<<<<<
 * 
 *     cdef object obj
 */
struct __pyx_memoryview_obj {
  PyObject_HEAD
  struct __pyx_vtabstruct_memoryview *__pyx_vtab;
  PyObject *obj;
  PyObject *_size;
  PyObject *_array_interface;
  PyThread_type_lock lock;
  __pyx_atomic_int acquisition_count[2];
  __pyx_atomic_int *acquisition_count_aligned_p;
  Py_buffer view;
  int flags;
  int dtype_is_object;
  __Pyx_TypeInfo *typeinfo;
};


/* "View.MemoryView":967
 * 
 * @cname('__pyx_memoryviewslice')
 * cdef class _memoryviewslice(memoryview):             # <<<<<<<<<<<<<<
 *     "Internal class for passing memoryview slices to Python"
 * 
 */
struct __pyx_memoryviewslice_obj {
  struct __pyx_memoryview_obj __pyx_base;
  __Pyx_memviewslice from_slice;
  PyObject *from_object;
  PyObject *(*to_object_func)(char *);
  int (*to_dtype_func)(char *, PyObject *);
};



/* "dysgu/map_set_utils.pxd":99
 * 
 * 
 * cdef class Py_BasicIntervalTree:             # <<<<<<<<<<<<<<
 *     cdef BasicIntervalTree *thisptr
 * 
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_BasicIntervalTree {
  void (*add)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int, int __pyx_skip_dispatch);
  int (*searchInterval)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
  PyObject *(*overlappingInterval)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
  void (*index)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int __pyx_skip_dispatch);
  PyObject *(*allOverlappingIntervals)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
  int (*countOverlappingIntervals)(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree *, int, int, int __pyx_skip_dispatch);
};
static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_BasicIntervalTree *__pyx_vtabptr_5dysgu_13map_set_utils_Py_BasicIntervalTree;


/* "dysgu/map_set_utils.pxd":125
 * 
 * 
 * cdef class Py_DiGraph:             # <<<<<<<<<<<<<<
 *     """DiGraph, no weight"""
 *     cdef DiGraph *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_DiGraph {
  int (*addNode)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *);
  int (*hasEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int, int);
  void (*addEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int, int, int);
  void (*updateEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int, int, int);
  int (*numberOfNodes)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *);
  std::vector<std::pair<int,int> >  (*forInEdgesOf)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int);
  std::vector<int>  (*neighbors)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int);
  float (*node_path_quality)(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph *, int, int, int);
};
static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_DiGraph *__pyx_vtabptr_5dysgu_13map_set_utils_Py_DiGraph;


/* "dysgu/map_set_utils.pxd":170
 * 
 * 
 * cdef class Py_SimpleGraph:             # <<<<<<<<<<<<<<
 *     """Graph"""
 *     cdef SimpleGraph *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_SimpleGraph {
  int (*addNode)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int __pyx_skip_dispatch);
  int (*hasEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int, int, int __pyx_skip_dispatch);
  void (*addEdge)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int, int, int, int __pyx_skip_dispatch);
  int (*edgeCount)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int __pyx_skip_dispatch);
  int (*weight)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int, int, int __pyx_skip_dispatch);
  std::vector<int>  (*neighbors)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int, int __pyx_skip_dispatch);
  void (*removeNode)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int, int __pyx_skip_dispatch);
  std::vector<int>  (*connectedComponents)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, char *, int, int __pyx_skip_dispatch);
  int (*showSize)(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph *, int __pyx_skip_dispatch);
};
static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_SimpleGraph *__pyx_vtabptr_5dysgu_13map_set_utils_Py_SimpleGraph;


/* "dysgu/map_set_utils.pxd":196
 * 
 * 
 * cdef class Py_Int2IntMap:             # <<<<<<<<<<<<<<
 *     """Fast integer to integer unordered map using tsl::robin-map"""
 *     cdef Int2IntMap *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap {
  void (*insert)(struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *, int, int);
  void (*erase)(struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *, int);
  int (*has_key)(struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *, int);
  int (*get)(struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *, int);
  __pyx_t_5dysgu_13map_set_utils_get_val_result (*get_value)(struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *, int);
  int (*size)(struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *);
};
static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *__pyx_vtabptr_5dysgu_13map_set_utils_Py_Int2IntMap;


/* "dysgu/map_set_utils.pxd":218
 * 
 * 
 * cdef class Py_IntSet:             # <<<<<<<<<<<<<<
 *     """Fast 32 bit int set using tsl::robin-set"""
 *     cdef IntSet *thisptr
 */

struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_IntSet {
  void (*insert)(struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet *, int);
  void (*erase)(struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet *, int);
  int (*has_key)(struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet *, int);
  int (*size)(struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet *);
};
static struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_IntSet *__pyx_vtabptr_5dysgu_13map_set_utils_Py_IntSet;


/* "pysam/libchtslib.pxd":2680
 * 
 * 
 * cdef class HTSFile(object):             # <<<<<<<<<<<<<<
 *     cdef          htsFile *htsfile       # pointer to htsFile structure
 *     cdef          int64_t start_offset   # BGZF offset of first record
 */

struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile {
  htsFile *(*_open_htsfile)(struct __pyx_obj_5pysam_10libchtslib_HTSFile *);
};
static struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtabptr_5pysam_10libchtslib_HTSFile;


/* "pysam/libcfaidx.pxd":37
 *                     int * dret)
 * 
 * cdef class FastaFile:             # <<<<<<<<<<<<<<
 *     cdef bint is_remote
 *     cdef object _filename, _references, _lengths, reference2length
 */

struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile {
  char *(*_fetch)(struct __pyx_obj_5pysam_9libcfaidx_FastaFile *, char *, int, int, int *);
};
static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile *__pyx_vtabptr_5pysam_9libcfaidx_FastaFile;


/* "pysam/libcfaidx.pxd":45
 * 
 * 
 * cdef class FastqProxy:             # <<<<<<<<<<<<<<
 *     cdef kseq_t * _delegate
 *     cdef cython.str to_string(self)
 */

struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy {
  PyObject *(*to_string)(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy *);
  PyObject *(*tostring)(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy *);
  arrayobject *(*get_quality_array)(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_9libcfaidx_10FastqProxy_get_quality_array *__pyx_optional_args);
};
static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy *__pyx_vtabptr_5pysam_9libcfaidx_FastqProxy;


/* "pysam/libcfaidx.pxd":52
 * 
 * 
 * cdef class FastxRecord:             # <<<<<<<<<<<<<<
 *     """
 *     Python container for pysam.libcfaidx.FastqProxy with persistence.
 */

struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord {
  PyObject *(*to_string)(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord *);
  PyObject *(*tostring)(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord *);
  arrayobject *(*get_quality_array)(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_9libcfaidx_11FastxRecord_get_quality_array *__pyx_optional_args);
};
static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord *__pyx_vtabptr_5pysam_9libcfaidx_FastxRecord;


/* "pysam/libcfaidx.pxd":61
 *     cpdef array.array get_quality_array(self, int offset=*)
 * 
 * cdef class FastxFile:             # <<<<<<<<<<<<<<
 *     cdef object _filename
 *     cdef BGZF * fastqfile
 */

struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile {
  kseq_t *(*getCurrent)(struct __pyx_obj_5pysam_9libcfaidx_FastxFile *);
  int (*cnext)(struct __pyx_obj_5pysam_9libcfaidx_FastxFile *);
};
static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile *__pyx_vtabptr_5pysam_9libcfaidx_FastxFile;


/* "pysam/libcfaidx.pxd":73
 * 
 * # Compatibility Layer for pysam 0.8.1
 * cdef class FastqFile(FastxFile):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */

struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqFile {
  struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile __pyx_base;
};
static struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqFile *__pyx_vtabptr_5pysam_9libcfaidx_FastqFile;


/* "pysam/libcfaidx.pxd":78
 * 
 * # Compatibility Layer for pysam < 0.8
 * cdef class Fastafile(FastaFile):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */

struct __pyx_vtabstruct_5pysam_9libcfaidx_Fastafile {
  struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile __pyx_base;
};
static struct __pyx_vtabstruct_5pysam_9libcfaidx_Fastafile *__pyx_vtabptr_5pysam_9libcfaidx_Fastafile;


/* "pysam/libcalignmentfile.pxd":44
 *     cdef bam_hdr_t *ptr
 * 
 * cdef class AlignmentFile(HTSFile):             # <<<<<<<<<<<<<<
 *     cdef readonly object reference_filename
 *     cdef readonly AlignmentHeader header
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_AlignmentFile {
  struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile __pyx_base;
  bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *);
  int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *);
  int (*write)(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile *, struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int __pyx_skip_dispatch);
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_AlignmentFile *__pyx_vtabptr_5pysam_17libcalignmentfile_AlignmentFile;


/* "pysam/libcalignmentfile.pxd":71
 * 
 * 
 * cdef class IteratorRowRegion(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef hts_itr_t * iter
 *     cdef bam1_t * getCurrent(self)
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion {
  bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *);
  int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion *);
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowRegion;


/* "pysam/libcalignmentfile.pxd":77
 * 
 * 
 * cdef class IteratorRowHead(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef int max_rows
 *     cdef int current_row
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead {
  bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead *);
  int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead *);
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowHead;


/* "pysam/libcalignmentfile.pxd":84
 * 
 * 
 * cdef class IteratorRowAll(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef bam1_t * getCurrent(self)
 *     cdef int cnext(self)
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll {
  bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll *);
  int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll *);
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowAll;


/* "pysam/libcalignmentfile.pxd":94
 * 
 * 
 * cdef class IteratorRowSelection(IteratorRow):             # <<<<<<<<<<<<<<
 *     cdef int current_pos
 *     cdef positions
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection {
  bam1_t *(*getCurrent)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection *);
  int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection *);
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowSelection;


/* "pysam/libcalignmentfile.pxd":101
 * 
 * 
 * cdef class IteratorColumn:             # <<<<<<<<<<<<<<
 * 
 *     # result of the last plbuf_push
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn {
  int (*cnext)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *);
  char *(*get_sequence)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *);
  PyObject *(*_setup_iterator)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *, int, int, int, struct __pyx_opt_args_5pysam_17libcalignmentfile_14IteratorColumn__setup_iterator *__pyx_optional_args);
  PyObject *(*_setup_raw_rest_iterator)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *);
  PyObject *(*reset)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *, PyObject *, PyObject *, PyObject *);
  PyObject *(*_free_pileup_iter)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *);
  char *(*getSequence)(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn *);
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumn;


/* "pysam/libcalignmentfile.pxd":133
 * 
 * 
 * cdef class IteratorColumnRegion(IteratorColumn):             # <<<<<<<<<<<<<<
 *     cdef int start
 *     cdef int stop
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnRegion {
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn __pyx_base;
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnRegion *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnRegion;


/* "pysam/libcalignmentfile.pxd":139
 * 
 * 
 * cdef class IteratorColumnAllRefs(IteratorColumn):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAllRefs {
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn __pyx_base;
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAllRefs *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAllRefs;


/* "pysam/libcalignmentfile.pxd":143
 * 
 * 
 * cdef class IteratorColumnAll(IteratorColumn):             # <<<<<<<<<<<<<<
 *     pass
 * 
 */

struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAll {
  struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn __pyx_base;
};
static struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAll *__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAll;


/* "pysam/libcalignedsegment.pxd":34
 * 
 * # Note: need to declare all C fields and methods here
 * cdef class AlignedSegment:             # <<<<<<<<<<<<<<
 * 
 *     # object that this AlignedSegment represents
 */

struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment {
  PyObject *(*set_tag)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, PyObject *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_set_tag *__pyx_optional_args);
  PyObject *(*get_tag)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_get_tag *__pyx_optional_args);
  PyObject *(*has_tag)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, PyObject *, int __pyx_skip_dispatch);
  PyObject *(*to_string)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int __pyx_skip_dispatch);
  PyObject *(*tostring)(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int __pyx_skip_dispatch, struct __pyx_opt_args_5pysam_18libcalignedsegment_14AlignedSegment_tostring *__pyx_optional_args);
};
static struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment *__pyx_vtabptr_5pysam_18libcalignedsegment_AlignedSegment;


/* "dysgu/graph.pyx":119
 * 
 * 
 * cdef class ClipScoper:             # <<<<<<<<<<<<<<
 *     # todo sort out types; use uint64_t instead of long
 *     # first in pair is chrom position, second is node name
 */

struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper {
  void (*_add_m_find_candidates)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, PyObject *, int, int, int, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &, robin_hood::unordered_set<int>  &);
  void (*_refresh_scope)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, std::deque<std::pair<int,int> >  &, int, MinimizerTable &, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &, int);
  void (*_insert)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, PyObject *, int, int, int, int, robin_hood::unordered_set<int>  &);
  void (*update)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, PyObject *, int, int, int, robin_hood::unordered_set<int>  &);
};
static struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *__pyx_vtabptr_5dysgu_5graph_ClipScoper;


/* "dysgu/graph.pyx":326
 * 
 * 
 * cdef class PairedEndScoper:             # <<<<<<<<<<<<<<
 * 
 *     cdef int clst_dist
 */

struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper {
  void (*empty_scopes)(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *);
  std::vector<int>  (*find_other_nodes)(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *, int, int, int, int, int, __pyx_t_5dysgu_5graph_ReadEnum_t, int, int);
  void (*add_item)(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *, int, int, int, int, int, __pyx_t_5dysgu_5graph_ReadEnum_t, int);
};
static struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper *__pyx_vtabptr_5dysgu_5graph_PairedEndScoper;


/* "dysgu/graph.pyx":545
 * 
 * 
 * cdef class TemplateEdges:             # <<<<<<<<<<<<<<
 *     cdef public unordered_map[string, vector[int]] templates_s  # robin map was buggy for iterating
 *     def __init__(self):
 */

struct __pyx_vtabstruct_5dysgu_5graph_TemplateEdges {
  void (*add)(struct __pyx_obj_5dysgu_5graph_TemplateEdges *, PyObject *, int, int, int);
};
static struct __pyx_vtabstruct_5dysgu_5graph_TemplateEdges *__pyx_vtabptr_5dysgu_5graph_TemplateEdges;


/* "dysgu/graph.pyx":651
 *     #     return self.h, self.f, self.p, self.c, self.t, self.cigar_index, self.event_pos
 * 
 * cdef class NodeToName:             # <<<<<<<<<<<<<<
 *     # Index these vectors to get the unique 'template_name'
 *     cdef vector[uint64_t] h
 */

struct __pyx_vtabstruct_5dysgu_5graph_NodeToName {
  void (*append)(struct __pyx_obj_5dysgu_5graph_NodeToName *, long, int, int, int, long, int, int);
};
static struct __pyx_vtabstruct_5dysgu_5graph_NodeToName *__pyx_vtabptr_5dysgu_5graph_NodeToName;


/* "View.MemoryView":106
 * 
 * @cname("__pyx_array")
 * cdef class array:             # <<<<<<<<<<<<<<
 * 
 *     cdef:
 */

struct __pyx_vtabstruct_array {
  PyObject *(*get_memview)(struct __pyx_array_obj *);
};
static struct __pyx_vtabstruct_array *__pyx_vtabptr_array;


/* "View.MemoryView":331
 * 
 * @cname('__pyx_memoryview')
 * cdef class memoryview(object):             # <<<<<<<<<<<<<<
 * 
 *     cdef object obj
 */

struct __pyx_vtabstruct_memoryview {
  char *(*get_item_pointer)(struct __pyx_memoryview_obj *, PyObject *);
  PyObject *(*is_slice)(struct __pyx_memoryview_obj *, PyObject *);
  PyObject *(*setitem_slice_assignment)(struct __pyx_memoryview_obj *, PyObject *, PyObject *);
  PyObject *(*setitem_slice_assign_scalar)(struct __pyx_memoryview_obj *, struct __pyx_memoryview_obj *, PyObject *);
  PyObject *(*setitem_indexed)(struct __pyx_memoryview_obj *, PyObject *, PyObject *);
  PyObject *(*convert_item_to_object)(struct __pyx_memoryview_obj *, char *);
  PyObject *(*assign_item_from_object)(struct __pyx_memoryview_obj *, char *, PyObject *);
};
static struct __pyx_vtabstruct_memoryview *__pyx_vtabptr_memoryview;


/* "View.MemoryView":967
 * 
 * @cname('__pyx_memoryviewslice')
 * cdef class _memoryviewslice(memoryview):             # <<<<<<<<<<<<<<
 *     "Internal class for passing memoryview slices to Python"
 * 
 */

struct __pyx_vtabstruct__memoryviewslice {
  struct __pyx_vtabstruct_memoryview __pyx_base;
};
static struct __pyx_vtabstruct__memoryviewslice *__pyx_vtabptr__memoryviewslice;

/* --- Runtime support code (head) --- */
/* Refnanny.proto */
#ifndef CYTHON_REFNANNY
  #define CYTHON_REFNANNY 0
#endif
#if CYTHON_REFNANNY
  typedef struct {
    void (*INCREF)(void*, PyObject*, int);
    void (*DECREF)(void*, PyObject*, int);
    void (*GOTREF)(void*, PyObject*, int);
    void (*GIVEREF)(void*, PyObject*, int);
    void* (*SetupContext)(const char*, int, const char*);
    void (*FinishContext)(void**);
  } __Pyx_RefNannyAPIStruct;
  static __Pyx_RefNannyAPIStruct *__Pyx_RefNanny = NULL;
  static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname);
  #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL;
#ifdef WITH_THREAD
  #define __Pyx_RefNannySetupContext(name, acquire_gil)\
          if (acquire_gil) {\
              PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\
              __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
              PyGILState_Release(__pyx_gilstate_save);\
          } else {\
              __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\
          }
#else
  #define __Pyx_RefNannySetupContext(name, acquire_gil)\
          __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__)
#endif
  #define __Pyx_RefNannyFinishContext()\
          __Pyx_RefNanny->FinishContext(&__pyx_refnanny)
  #define __Pyx_INCREF(r)  __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_DECREF(r)  __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_GOTREF(r)  __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
  #define __Pyx_XINCREF(r)  do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0)
  #define __Pyx_XDECREF(r)  do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
  #define __Pyx_XGOTREF(r)  do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
  #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
#else
  #define __Pyx_RefNannyDeclarations
  #define __Pyx_RefNannySetupContext(name, acquire_gil)
  #define __Pyx_RefNannyFinishContext()
  #define __Pyx_INCREF(r) Py_INCREF(r)
  #define __Pyx_DECREF(r) Py_DECREF(r)
  #define __Pyx_GOTREF(r)
  #define __Pyx_GIVEREF(r)
  #define __Pyx_XINCREF(r) Py_XINCREF(r)
  #define __Pyx_XDECREF(r) Py_XDECREF(r)
  #define __Pyx_XGOTREF(r)
  #define __Pyx_XGIVEREF(r)
#endif
#define __Pyx_XDECREF_SET(r, v) do {\
        PyObject *tmp = (PyObject *) r;\
        r = v; __Pyx_XDECREF(tmp);\
    } while (0)
#define __Pyx_DECREF_SET(r, v) do {\
        PyObject *tmp = (PyObject *) r;\
        r = v; __Pyx_DECREF(tmp);\
    } while (0)
#define __Pyx_CLEAR(r)    do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
#define __Pyx_XCLEAR(r)   do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)

/* PyObjectGetAttrStr.proto */
#if CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name);
#else
#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
#endif

/* GetBuiltinName.proto */
static PyObject *__Pyx_GetBuiltinName(PyObject *name);

/* PyCFunctionFastCall.proto */
#if CYTHON_FAST_PYCCALL
static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs);
#else
#define __Pyx_PyCFunction_FastCall(func, args, nargs)  (assert(0), NULL)
#endif

/* PyFunctionFastCall.proto */
#if CYTHON_FAST_PYCALL
#define __Pyx_PyFunction_FastCall(func, args, nargs)\
    __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
#if 1 || PY_VERSION_HEX < 0x030600B1
static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs);
#else
#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs)
#endif
#define __Pyx_BUILD_ASSERT_EXPR(cond)\
    (sizeof(char [1 - 2*!(cond)]) - 1)
#ifndef Py_MEMBER_SIZE
#define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member)
#endif
#if CYTHON_FAST_PYCALL
  static size_t __pyx_pyframe_localsplus_offset = 0;
  #include "frameobject.h"
#if PY_VERSION_HEX >= 0x030b00a6
  #ifndef Py_BUILD_CORE
    #define Py_BUILD_CORE 1
  #endif
  #include "internal/pycore_frame.h"
#endif
  #define __Pxy_PyFrame_Initialize_Offsets()\
    ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\
     (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus)))
  #define __Pyx_PyFrame_GetLocalsplus(frame)\
    (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset))
#endif // CYTHON_FAST_PYCALL
#endif

/* PyObjectCall.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
#else
#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
#endif

/* PyObjectCallMethO.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
#endif

/* PyObjectCallOneArg.proto */
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);

/* PyThreadStateGet.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_PyThreadState_declare  PyThreadState *__pyx_tstate;
#define __Pyx_PyThreadState_assign  __pyx_tstate = __Pyx_PyThreadState_Current;
#define __Pyx_PyErr_Occurred()  __pyx_tstate->curexc_type
#else
#define __Pyx_PyThreadState_declare
#define __Pyx_PyThreadState_assign
#define __Pyx_PyErr_Occurred()  PyErr_Occurred()
#endif

/* PyErrFetchRestore.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL)
#define __Pyx_ErrRestoreWithState(type, value, tb)  __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
#define __Pyx_ErrFetchWithState(type, value, tb)    __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
#define __Pyx_ErrRestore(type, value, tb)  __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
#define __Pyx_ErrFetch(type, value, tb)    __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL))
#else
#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
#endif
#else
#define __Pyx_PyErr_Clear() PyErr_Clear()
#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
#define __Pyx_ErrRestoreWithState(type, value, tb)  PyErr_Restore(type, value, tb)
#define __Pyx_ErrFetchWithState(type, value, tb)  PyErr_Fetch(type, value, tb)
#define __Pyx_ErrRestoreInState(tstate, type, value, tb)  PyErr_Restore(type, value, tb)
#define __Pyx_ErrFetchInState(tstate, type, value, tb)  PyErr_Fetch(type, value, tb)
#define __Pyx_ErrRestore(type, value, tb)  PyErr_Restore(type, value, tb)
#define __Pyx_ErrFetch(type, value, tb)  PyErr_Fetch(type, value, tb)
#endif

/* WriteUnraisableException.proto */
static void __Pyx_WriteUnraisable(const char *name, int clineno,
                                  int lineno, const char *filename,
                                  int full_traceback, int nogil);

/* PyUnicode_Substring.proto */
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Substring(
            PyObject* text, Py_ssize_t start, Py_ssize_t stop);

/* RaiseArgTupleInvalid.proto */
static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
    Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);

/* RaiseDoubleKeywords.proto */
static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);

/* ParseKeywords.proto */
static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
    PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
    const char* function_name);

/* PyDictVersioning.proto */
#if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
#define __PYX_DICT_VERSION_INIT  ((PY_UINT64_T) -1)
#define __PYX_GET_DICT_VERSION(dict)  (((PyDictObject*)(dict))->ma_version_tag)
#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\
    (version_var) = __PYX_GET_DICT_VERSION(dict);\
    (cache_var) = (value);
#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\
    static PY_UINT64_T __pyx_dict_version = 0;\
    static PyObject *__pyx_dict_cached_value = NULL;\
    if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\
        (VAR) = __pyx_dict_cached_value;\
    } else {\
        (VAR) = __pyx_dict_cached_value = (LOOKUP);\
        __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\
    }\
}
static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj);
static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj);
static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version);
#else
#define __PYX_GET_DICT_VERSION(dict)  (0)
#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)
#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP)  (VAR) = (LOOKUP);
#endif

/* GetModuleGlobalName.proto */
#if CYTHON_USE_DICT_VERSIONS
#define __Pyx_GetModuleGlobalName(var, name)  do {\
    static PY_UINT64_T __pyx_dict_version = 0;\
    static PyObject *__pyx_dict_cached_value = NULL;\
    (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\
        (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\
        __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
} while(0)
#define __Pyx_GetModuleGlobalNameUncached(var, name)  do {\
    PY_UINT64_T __pyx_dict_version;\
    PyObject *__pyx_dict_cached_value;\
    (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\
} while(0)
static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value);
#else
#define __Pyx_GetModuleGlobalName(var, name)  (var) = __Pyx__GetModuleGlobalName(name)
#define __Pyx_GetModuleGlobalNameUncached(var, name)  (var) = __Pyx__GetModuleGlobalName(name)
static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name);
#endif

/* PyObjectCall2Args.proto */
static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2);

/* PyIntBinop.proto */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
#else
#define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace, zerodivision_check)\
    (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2))
#endif

/* GetItemInt.proto */
#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
    (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
               __Pyx_GetItemInt_Generic(o, to_py_func(i))))
#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
    (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
                                                              int wraparound, int boundscheck);
#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
    (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
                                                              int wraparound, int boundscheck);
static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
                                                     int is_list, int wraparound, int boundscheck);

/* SetItemInt.proto */
#define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
    (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
    __Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) :\
    (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) :\
               __Pyx_SetItemInt_Generic(o, to_py_func(i), v)))
static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v);
static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v,
                                               int is_list, int wraparound, int boundscheck);

/* RaiseTooManyValuesToUnpack.proto */
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);

/* RaiseNeedMoreValuesToUnpack.proto */
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);

/* RaiseNoneIterError.proto */
static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);

/* RaiseException.proto */
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);

/* KeywordStringCheck.proto */
static int __Pyx_CheckKeywordStrings(PyObject *kwdict, const char* function_name, int kw_allowed);

/* PyErrExceptionMatches.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
#else
#define __Pyx_PyErr_ExceptionMatches(err)  PyErr_ExceptionMatches(err)
#endif

/* GetAttr.proto */
static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *);

/* GetAttr3.proto */
static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *);

/* ListAppend.proto */
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
    PyListObject* L = (PyListObject*) list;
    Py_ssize_t len = Py_SIZE(list);
    if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
        Py_INCREF(x);
        PyList_SET_ITEM(list, len, x);
        __Pyx_SET_SIZE(list, len + 1);
        return 0;
    }
    return PyList_Append(list, x);
}
#else
#define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
#endif

/* SliceObject.proto */
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(
        PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop,
        PyObject** py_start, PyObject** py_stop, PyObject** py_slice,
        int has_cstart, int has_cstop, int wraparound);

/* PyIntBinop.proto */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_AndObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
#else
#define __Pyx_PyInt_AndObjC(op1, op2, intval, inplace, zerodivision_check)\
    (inplace ? PyNumber_InPlaceAnd(op1, op2) : PyNumber_And(op1, op2))
#endif

/* IterFinish.proto */
static CYTHON_INLINE int __Pyx_IterFinish(void);

/* UnpackItemEndCheck.proto */
static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected);

/* PyUnicodeContains.proto */
static CYTHON_INLINE int __Pyx_PyUnicode_ContainsTF(PyObject* substring, PyObject* text, int eq) {
    int result = PyUnicode_Contains(text, substring);
    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}

/* IncludeStringH.proto */
#include <string.h>

/* BytesEquals.proto */
static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals);

/* UnicodeEquals.proto */
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals);

/* PyObjectCallNoArg.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
#else
#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL)
#endif

/* PyIntCompare.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, long inplace);

/* ListCompAppend.proto */
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
    PyListObject* L = (PyListObject*) list;
    Py_ssize_t len = Py_SIZE(list);
    if (likely(L->allocated > len)) {
        Py_INCREF(x);
        PyList_SET_ITEM(list, len, x);
        __Pyx_SET_SIZE(list, len + 1);
        return 0;
    }
    return PyList_Append(list, x);
}
#else
#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x)
#endif

/* PyObjectGetMethod.proto */
static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method);

/* PyObjectCallMethod1.proto */
static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg);

/* append.proto */
static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x);

/* FetchCommonType.proto */
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);

/* CythonFunctionShared.proto */
#define __Pyx_CyFunction_USED 1
#define __Pyx_CYFUNCTION_STATICMETHOD  0x01
#define __Pyx_CYFUNCTION_CLASSMETHOD   0x02
#define __Pyx_CYFUNCTION_CCLASS        0x04
#define __Pyx_CyFunction_GetClosure(f)\
    (((__pyx_CyFunctionObject *) (f))->func_closure)
#define __Pyx_CyFunction_GetClassObj(f)\
    (((__pyx_CyFunctionObject *) (f))->func_classobj)
#define __Pyx_CyFunction_Defaults(type, f)\
    ((type *)(((__pyx_CyFunctionObject *) (f))->defaults))
#define __Pyx_CyFunction_SetDefaultsGetter(f, g)\
    ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g)
typedef struct {
    PyCFunctionObject func;
#if PY_VERSION_HEX < 0x030500A0
    PyObject *func_weakreflist;
#endif
    PyObject *func_dict;
    PyObject *func_name;
    PyObject *func_qualname;
    PyObject *func_doc;
    PyObject *func_globals;
    PyObject *func_code;
    PyObject *func_closure;
    PyObject *func_classobj;
    void *defaults;
    int defaults_pyobjects;
    size_t defaults_size;  // used by FusedFunction for copying defaults
    int flags;
    PyObject *defaults_tuple;
    PyObject *defaults_kwdict;
    PyObject *(*defaults_getter)(PyObject *);
    PyObject *func_annotations;
} __pyx_CyFunctionObject;
static PyTypeObject *__pyx_CyFunctionType = 0;
#define __Pyx_CyFunction_Check(obj)  (__Pyx_TypeCheck(obj, __pyx_CyFunctionType))
static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml,
                                      int flags, PyObject* qualname,
                                      PyObject *self,
                                      PyObject *module, PyObject *globals,
                                      PyObject* code);
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m,
                                                         size_t size,
                                                         int pyobjects);
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m,
                                                            PyObject *tuple);
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m,
                                                             PyObject *dict);
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m,
                                                              PyObject *dict);
static int __pyx_CyFunction_init(void);

/* CythonFunction.proto */
static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml,
                                      int flags, PyObject* qualname,
                                      PyObject *closure,
                                      PyObject *module, PyObject *globals,
                                      PyObject* code);

/* py_abs.proto */
#if CYTHON_USE_PYLONG_INTERNALS
static PyObject *__Pyx_PyLong_AbsNeg(PyObject *num);
#define __Pyx_PyNumber_Absolute(x)\
    ((likely(PyLong_CheckExact(x))) ?\
         (likely(Py_SIZE(x) >= 0) ? (Py_INCREF(x), (x)) : __Pyx_PyLong_AbsNeg(x)) :\
         PyNumber_Absolute(x))
#else
#define __Pyx_PyNumber_Absolute(x)  PyNumber_Absolute(x)
#endif

/* MemviewSliceInit.proto */
#define __Pyx_BUF_MAX_NDIMS %(BUF_MAX_NDIMS)d
#define __Pyx_MEMVIEW_DIRECT   1
#define __Pyx_MEMVIEW_PTR      2
#define __Pyx_MEMVIEW_FULL     4
#define __Pyx_MEMVIEW_CONTIG   8
#define __Pyx_MEMVIEW_STRIDED  16
#define __Pyx_MEMVIEW_FOLLOW   32
#define __Pyx_IS_C_CONTIG 1
#define __Pyx_IS_F_CONTIG 2
static int __Pyx_init_memviewslice(
                struct __pyx_memoryview_obj *memview,
                int ndim,
                __Pyx_memviewslice *memviewslice,
                int memview_is_new_reference);
static CYTHON_INLINE int __pyx_add_acquisition_count_locked(
    __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
static CYTHON_INLINE int __pyx_sub_acquisition_count_locked(
    __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
#define __pyx_get_slice_count_pointer(memview) (memview->acquisition_count_aligned_p)
#define __pyx_get_slice_count(memview) (*__pyx_get_slice_count_pointer(memview))
#define __PYX_INC_MEMVIEW(slice, have_gil) __Pyx_INC_MEMVIEW(slice, have_gil, __LINE__)
#define __PYX_XDEC_MEMVIEW(slice, have_gil) __Pyx_XDEC_MEMVIEW(slice, have_gil, __LINE__)
static CYTHON_INLINE void __Pyx_INC_MEMVIEW(__Pyx_memviewslice *, int, int);
static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *, int, int);

/* ObjectGetItem.proto */
#if CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key);
#else
#define __Pyx_PyObject_GetItem(obj, key)  PyObject_GetItem(obj, key)
#endif

/* PyIntBinop.proto */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check);
#else
#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\
    (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
#endif

/* PyIntCompare.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, long intval, long inplace);

/* PyObjectCallMethod0.proto */
static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name);

/* UnpackTupleError.proto */
static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index);

/* UnpackTuple2.proto */
#define __Pyx_unpack_tuple2(tuple, value1, value2, is_tuple, has_known_size, decref_tuple)\
    (likely(is_tuple || PyTuple_Check(tuple)) ?\
        (likely(has_known_size || PyTuple_GET_SIZE(tuple) == 2) ?\
            __Pyx_unpack_tuple2_exact(tuple, value1, value2, decref_tuple) :\
            (__Pyx_UnpackTupleError(tuple, 2), -1)) :\
        __Pyx_unpack_tuple2_generic(tuple, value1, value2, has_known_size, decref_tuple))
static CYTHON_INLINE int __Pyx_unpack_tuple2_exact(
    PyObject* tuple, PyObject** value1, PyObject** value2, int decref_tuple);
static int __Pyx_unpack_tuple2_generic(
    PyObject* tuple, PyObject** value1, PyObject** value2, int has_known_size, int decref_tuple);

/* dict_iter.proto */
static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name,
                                                   Py_ssize_t* p_orig_length, int* p_is_dict);
static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos,
                                              PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict);

/* PyObjectSetAttrStr.proto */
#if CYTHON_USE_TYPE_SLOTS
#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL)
static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value);
#else
#define __Pyx_PyObject_DelAttrStr(o,n)   PyObject_DelAttr(o,n)
#define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v)
#endif

/* PySequenceContains.proto */
static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) {
    int result = PySequence_Contains(seq, item);
    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}

/* pop_index.proto */
static PyObject* __Pyx__PyObject_PopNewIndex(PyObject* L, PyObject* py_ix);
static PyObject* __Pyx__PyObject_PopIndex(PyObject* L, PyObject* py_ix);
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static PyObject* __Pyx__PyList_PopIndex(PyObject* L, PyObject* py_ix, Py_ssize_t ix);
#define __Pyx_PyObject_PopIndex(L, py_ix, ix, is_signed, type, to_py_func) (\
    (likely(PyList_CheckExact(L) && __Pyx_fits_Py_ssize_t(ix, type, is_signed))) ?\
        __Pyx__PyList_PopIndex(L, py_ix, ix) : (\
        (unlikely((py_ix) == Py_None)) ? __Pyx__PyObject_PopNewIndex(L, to_py_func(ix)) :\
            __Pyx__PyObject_PopIndex(L, py_ix)))
#define __Pyx_PyList_PopIndex(L, py_ix, ix, is_signed, type, to_py_func) (\
    __Pyx_fits_Py_ssize_t(ix, type, is_signed) ?\
        __Pyx__PyList_PopIndex(L, py_ix, ix) : (\
        (unlikely((py_ix) == Py_None)) ? __Pyx__PyObject_PopNewIndex(L, to_py_func(ix)) :\
            __Pyx__PyObject_PopIndex(L, py_ix)))
#else
#define __Pyx_PyList_PopIndex(L, py_ix, ix, is_signed, type, to_py_func)\
    __Pyx_PyObject_PopIndex(L, py_ix, ix, is_signed, type, to_py_func)
#define __Pyx_PyObject_PopIndex(L, py_ix, ix, is_signed, type, to_py_func) (\
    (unlikely((py_ix) == Py_None)) ? __Pyx__PyObject_PopNewIndex(L, to_py_func(ix)) :\
        __Pyx__PyObject_PopIndex(L, py_ix))
#endif

/* ArgTypeTest.proto */
#define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\
    ((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\
        __Pyx__ArgTypeTest(obj, type, name, exact))
static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact);

/* ExtTypeTest.proto */
static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);

/* PyObjectFormatSimple.proto */
#if CYTHON_COMPILING_IN_PYPY
    #define __Pyx_PyObject_FormatSimple(s, f) (\
        likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
        PyObject_Format(s, f))
#elif PY_MAJOR_VERSION < 3
    #define __Pyx_PyObject_FormatSimple(s, f) (\
        likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
        likely(PyString_CheckExact(s)) ? PyUnicode_FromEncodedObject(s, NULL, "strict") :\
        PyObject_Format(s, f))
#elif CYTHON_USE_TYPE_SLOTS
    #define __Pyx_PyObject_FormatSimple(s, f) (\
        likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
        likely(PyLong_CheckExact(s)) ? PyLong_Type.tp_str(s) :\
        likely(PyFloat_CheckExact(s)) ? PyFloat_Type.tp_str(s) :\
        PyObject_Format(s, f))
#else
    #define __Pyx_PyObject_FormatSimple(s, f) (\
        likely(PyUnicode_CheckExact(s)) ? (Py_INCREF(s), s) :\
        PyObject_Format(s, f))
#endif

/* JoinPyUnicode.proto */
static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
                                      Py_UCS4 max_char);

/* pyfrozenset_new.proto */
static CYTHON_INLINE PyObject* __Pyx_PyFrozenSet_New(PyObject* it);

/* PySetContains.proto */
static CYTHON_INLINE int __Pyx_PySet_ContainsTF(PyObject* key, PyObject* set, int eq);

/* PyDictContains.proto */
static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) {
    int result = PyDict_Contains(dict, item);
    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}

/* DictGetItem.proto */
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key);
#define __Pyx_PyObject_Dict_GetItem(obj, name)\
    (likely(PyDict_CheckExact(obj)) ?\
     __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name))
#else
#define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
#define __Pyx_PyObject_Dict_GetItem(obj, name)  PyObject_GetItem(obj, name)
#endif

/* UnpackUnboundCMethod.proto */
typedef struct {
    PyObject *type;
    PyObject **method_name;
    PyCFunction func;
    PyObject *method;
    int flag;
} __Pyx_CachedCFunction;

/* CallUnboundCMethod1.proto */
static PyObject* __Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg);
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg);
#else
#define __Pyx_CallUnboundCMethod1(cfunc, self, arg)  __Pyx__CallUnboundCMethod1(cfunc, self, arg)
#endif

/* set_iter.proto */
static CYTHON_INLINE PyObject* __Pyx_set_iterator(PyObject* iterable, int is_set,
                                                  Py_ssize_t* p_orig_length, int* p_source_is_set);
static CYTHON_INLINE int __Pyx_set_iter_next(
        PyObject* iter_obj, Py_ssize_t orig_length,
        Py_ssize_t* ppos, PyObject **value,
        int source_is_set);

/* Import.proto */
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);

/* ImportFrom.proto */
static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);

/* HasAttr.proto */
static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *);

/* GetTopmostException.proto */
#if CYTHON_USE_EXC_INFO_STACK
static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate);
#endif

/* SaveResetException.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_ExceptionSave(type, value, tb)  __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#define __Pyx_ExceptionReset(type, value, tb)  __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
#else
#define __Pyx_ExceptionSave(type, value, tb)   PyErr_GetExcInfo(type, value, tb)
#define __Pyx_ExceptionReset(type, value, tb)  PyErr_SetExcInfo(type, value, tb)
#endif

/* GetException.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_GetException(type, value, tb)  __Pyx__GetException(__pyx_tstate, type, value, tb)
static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
#endif

/* StrEquals.proto */
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
#else
#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
#endif

/* DivInt[Py_ssize_t].proto */
static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t);

/* UnaryNegOverflows.proto */
#define UNARY_NEG_WOULD_OVERFLOW(x)\
        (((x) < 0) & ((unsigned long)(x) == 0-(unsigned long)(x)))

static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *); /*proto*/
/* decode_c_string_utf16.proto */
static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16(const char *s, Py_ssize_t size, const char *errors) {
    int byteorder = 0;
    return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
}
static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16LE(const char *s, Py_ssize_t size, const char *errors) {
    int byteorder = -1;
    return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
}
static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16BE(const char *s, Py_ssize_t size, const char *errors) {
    int byteorder = 1;
    return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
}

/* decode_c_string.proto */
static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
         const char* cstring, Py_ssize_t start, Py_ssize_t stop,
         const char* encoding, const char* errors,
         PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors));

/* SwapException.proto */
#if CYTHON_FAST_THREAD_STATE
#define __Pyx_ExceptionSwap(type, value, tb)  __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#else
static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb);
#endif

/* FastTypeChecks.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
#else
#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
#define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type)
#define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2))
#endif
#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)

static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
/* ListExtend.proto */
static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) {
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject* none = _PyList_Extend((PyListObject*)L, v);
    if (unlikely(!none))
        return -1;
    Py_DECREF(none);
    return 0;
#else
    return PyList_SetSlice(L, PY_SSIZE_T_MAX, PY_SSIZE_T_MAX, v);
#endif
}

/* None.proto */
static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);

/* DivInt[long].proto */
static CYTHON_INLINE long __Pyx_div_long(long, long);

/* PyObject_GenericGetAttrNoDict.proto */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name);
#else
#define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr
#endif

/* PyObject_GenericGetAttr.proto */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name);
#else
#define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr
#endif

/* SetVTable.proto */
static int __Pyx_SetVtable(PyObject *dict, void *vtable);

/* PyObjectGetAttrStrNoError.proto */
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name);

/* SetupReduce.proto */
static int __Pyx_setup_reduce(PyObject* type_obj);

/* TypeImport.proto */
#ifndef __PYX_HAVE_RT_ImportType_proto
#define __PYX_HAVE_RT_ImportType_proto
enum __Pyx_ImportType_CheckSize {
   __Pyx_ImportType_CheckSize_Error = 0,
   __Pyx_ImportType_CheckSize_Warn = 1,
   __Pyx_ImportType_CheckSize_Ignore = 2
};
static PyTypeObject *__Pyx_ImportType(PyObject* module, const char *module_name, const char *class_name, size_t size, enum __Pyx_ImportType_CheckSize check_size);
#endif

/* GetVTable.proto */
static void* __Pyx_GetVtable(PyObject *dict);

/* SetNameInClass.proto */
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
#define __Pyx_SetNameInClass(ns, name, value)\
    (likely(PyDict_CheckExact(ns)) ? _PyDict_SetItem_KnownHash(ns, name, value, ((PyASCIIObject *) name)->hash) : PyObject_SetItem(ns, name, value))
#elif CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_SetNameInClass(ns, name, value)\
    (likely(PyDict_CheckExact(ns)) ? PyDict_SetItem(ns, name, value) : PyObject_SetItem(ns, name, value))
#else
#define __Pyx_SetNameInClass(ns, name, value)  PyObject_SetItem(ns, name, value)
#endif

/* CalculateMetaclass.proto */
static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases);

/* Py3ClassCreate.proto */
static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname,
                                           PyObject *mkw, PyObject *modname, PyObject *doc);
static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict,
                                      PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass);

/* CLineInTraceback.proto */
#ifdef CYTHON_CLINE_IN_TRACEBACK
#define __Pyx_CLineForTraceback(tstate, c_line)  (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
#else
static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
#endif

/* CodeObjectCache.proto */
typedef struct {
    PyCodeObject* code_object;
    int code_line;
} __Pyx_CodeObjectCacheEntry;
struct __Pyx_CodeObjectCache {
    int count;
    int max_count;
    __Pyx_CodeObjectCacheEntry* entries;
};
static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
static PyCodeObject *__pyx_find_code_object(int code_line);
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);

/* AddTraceback.proto */
static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename);

/* ArrayAPI.proto */
#ifndef _ARRAYARRAY_H
#define _ARRAYARRAY_H
typedef struct arraydescr {
    int typecode;
    int itemsize;
    PyObject * (*getitem)(struct arrayobject *, Py_ssize_t);
    int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *);
#if PY_MAJOR_VERSION >= 3
    char *formats;
#endif
} arraydescr;
struct arrayobject {
    PyObject_HEAD
    Py_ssize_t ob_size;
    union {
        char *ob_item;
        float *as_floats;
        double *as_doubles;
        int *as_ints;
        unsigned int *as_uints;
        unsigned char *as_uchars;
        signed char *as_schars;
        char *as_chars;
        unsigned long *as_ulongs;
        long *as_longs;
#if PY_MAJOR_VERSION >= 3
        unsigned long long *as_ulonglongs;
        long long *as_longlongs;
#endif
        short *as_shorts;
        unsigned short *as_ushorts;
        Py_UNICODE *as_pyunicodes;
        void *as_voidptr;
    } data;
    Py_ssize_t allocated;
    struct arraydescr *ob_descr;
    PyObject *weakreflist;
#if PY_MAJOR_VERSION >= 3
        int ob_exports;
#endif
};
#ifndef NO_NEWARRAY_INLINE
static CYTHON_INLINE PyObject * newarrayobject(PyTypeObject *type, Py_ssize_t size,
    struct arraydescr *descr) {
    arrayobject *op;
    size_t nbytes;
    if (size < 0) {
        PyErr_BadInternalCall();
        return NULL;
    }
    nbytes = size * descr->itemsize;
    if (nbytes / descr->itemsize != (size_t)size) {
        return PyErr_NoMemory();
    }
    op = (arrayobject *) type->tp_alloc(type, 0);
    if (op == NULL) {
        return NULL;
    }
    op->ob_descr = descr;
    op->allocated = size;
    op->weakreflist = NULL;
    __Pyx_SET_SIZE(op, size);
    if (size <= 0) {
        op->data.ob_item = NULL;
    }
    else {
        op->data.ob_item = PyMem_NEW(char, nbytes);
        if (op->data.ob_item == NULL) {
            Py_DECREF(op);
            return PyErr_NoMemory();
        }
    }
    return (PyObject *) op;
}
#else
PyObject* newarrayobject(PyTypeObject *type, Py_ssize_t size,
    struct arraydescr *descr);
#endif
static CYTHON_INLINE int resize(arrayobject *self, Py_ssize_t n) {
    void *items = (void*) self->data.ob_item;
    PyMem_Resize(items, char, (size_t)(n * self->ob_descr->itemsize));
    if (items == NULL) {
        PyErr_NoMemory();
        return -1;
    }
    self->data.ob_item = (char*) items;
    __Pyx_SET_SIZE(self, n);
    self->allocated = n;
    return 0;
}
static CYTHON_INLINE int resize_smart(arrayobject *self, Py_ssize_t n) {
    void *items = (void*) self->data.ob_item;
    Py_ssize_t newsize;
    if (n < self->allocated && n*4 > self->allocated) {
        __Pyx_SET_SIZE(self, n);
        return 0;
    }
    newsize = n + (n / 2) + 1;
    if (newsize <= n) {
        PyErr_NoMemory();
        return -1;
    }
    PyMem_Resize(items, char, (size_t)(newsize * self->ob_descr->itemsize));
    if (items == NULL) {
        PyErr_NoMemory();
        return -1;
    }
    self->data.ob_item = (char*) items;
    __Pyx_SET_SIZE(self, n);
    self->allocated = newsize;
    return 0;
}
#endif

/* None.proto */
#include <new>

/* GCCDiagnostics.proto */
#if defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6))
#define __Pyx_HAS_GCC_DIAGNOSTIC
#endif

#if PY_MAJOR_VERSION < 3
    static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags);
    static void __Pyx_ReleaseBuffer(Py_buffer *view);
#else
    #define __Pyx_GetBuffer PyObject_GetBuffer
    #define __Pyx_ReleaseBuffer PyBuffer_Release
#endif


/* BufferStructDeclare.proto */
typedef struct {
  Py_ssize_t shape, strides, suboffsets;
} __Pyx_Buf_DimInfo;
typedef struct {
  size_t refcount;
  Py_buffer pybuffer;
} __Pyx_Buffer;
typedef struct {
  __Pyx_Buffer *rcbuffer;
  char *data;
  __Pyx_Buf_DimInfo diminfo[8];
} __Pyx_LocalBuf_ND;

/* MemviewSliceIsContig.proto */
static int __pyx_memviewslice_is_contig(const __Pyx_memviewslice mvs, char order, int ndim);

/* OverlappingSlices.proto */
static int __pyx_slices_overlap(__Pyx_memviewslice *slice1,
                                __Pyx_memviewslice *slice2,
                                int ndim, size_t itemsize);

/* Capsule.proto */
static CYTHON_INLINE PyObject *__pyx_capsule_create(void *p, const char *sig);

/* CppExceptionConversion.proto */
#ifndef __Pyx_CppExn2PyErr
#include <new>
#include <typeinfo>
#include <stdexcept>
#include <ios>
static void __Pyx_CppExn2PyErr() {
  try {
    if (PyErr_Occurred())
      ; // let the latest Python exn pass through and ignore the current one
    else
      throw;
  } catch (const std::bad_alloc& exn) {
    PyErr_SetString(PyExc_MemoryError, exn.what());
  } catch (const std::bad_cast& exn) {
    PyErr_SetString(PyExc_TypeError, exn.what());
  } catch (const std::bad_typeid& exn) {
    PyErr_SetString(PyExc_TypeError, exn.what());
  } catch (const std::domain_error& exn) {
    PyErr_SetString(PyExc_ValueError, exn.what());
  } catch (const std::invalid_argument& exn) {
    PyErr_SetString(PyExc_ValueError, exn.what());
  } catch (const std::ios_base::failure& exn) {
    PyErr_SetString(PyExc_IOError, exn.what());
  } catch (const std::out_of_range& exn) {
    PyErr_SetString(PyExc_IndexError, exn.what());
  } catch (const std::overflow_error& exn) {
    PyErr_SetString(PyExc_OverflowError, exn.what());
  } catch (const std::range_error& exn) {
    PyErr_SetString(PyExc_ArithmeticError, exn.what());
  } catch (const std::underflow_error& exn) {
    PyErr_SetString(PyExc_ArithmeticError, exn.what());
  } catch (const std::exception& exn) {
    PyErr_SetString(PyExc_RuntimeError, exn.what());
  }
  catch (...)
  {
    PyErr_SetString(PyExc_RuntimeError, "Unknown exception");
  }
}
#endif

/* IsLittleEndian.proto */
static CYTHON_INLINE int __Pyx_Is_Little_Endian(void);

/* BufferFormatCheck.proto */
static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts);
static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
                              __Pyx_BufFmt_StackElem* stack,
                              __Pyx_TypeInfo* type);

/* TypeInfoCompare.proto */
static int __pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b);

/* MemviewSliceValidateAndInit.proto */
static int __Pyx_ValidateAndInit_memviewslice(
                int *axes_specs,
                int c_or_f_flag,
                int buf_flags,
                int ndim,
                __Pyx_TypeInfo *dtype,
                __Pyx_BufFmt_StackElem stack[],
                __Pyx_memviewslice *memviewslice,
                PyObject *original_obj);

/* ObjectToMemviewSlice.proto */
static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_unsigned_char__const__(PyObject *, int writable_flag);

/* MemviewDtypeToObject.proto */
static CYTHON_INLINE PyObject *__pyx_memview_get_unsigned_char__const__(const char *itemp);

/* ObjectToMemviewSlice.proto */
static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_unsigned_long(PyObject *, int writable_flag);

/* MemviewDtypeToObject.proto */
static CYTHON_INLINE PyObject *__pyx_memview_get_unsigned_long(const char *itemp);
static CYTHON_INLINE int __pyx_memview_set_unsigned_long(const char *itemp, PyObject *obj);

/* RealImag.proto */
#if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    #define __Pyx_CREAL(z) ((z).real())
    #define __Pyx_CIMAG(z) ((z).imag())
  #else
    #define __Pyx_CREAL(z) (__real__(z))
    #define __Pyx_CIMAG(z) (__imag__(z))
  #endif
#else
    #define __Pyx_CREAL(z) ((z).real)
    #define __Pyx_CIMAG(z) ((z).imag)
#endif
#if defined(__cplusplus) && CYTHON_CCOMPLEX\
        && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103)
    #define __Pyx_SET_CREAL(z,x) ((z).real(x))
    #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
#else
    #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
    #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
#endif

/* Arithmetic.proto */
#if CYTHON_CCOMPLEX
    #define __Pyx_c_eq_float(a, b)   ((a)==(b))
    #define __Pyx_c_sum_float(a, b)  ((a)+(b))
    #define __Pyx_c_diff_float(a, b) ((a)-(b))
    #define __Pyx_c_prod_float(a, b) ((a)*(b))
    #define __Pyx_c_quot_float(a, b) ((a)/(b))
    #define __Pyx_c_neg_float(a)     (-(a))
  #ifdef __cplusplus
    #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
    #define __Pyx_c_conj_float(z)    (::std::conj(z))
    #if 1
        #define __Pyx_c_abs_float(z)     (::std::abs(z))
        #define __Pyx_c_pow_float(a, b)  (::std::pow(a, b))
    #endif
  #else
    #define __Pyx_c_is_zero_float(z) ((z)==0)
    #define __Pyx_c_conj_float(z)    (conjf(z))
    #if 1
        #define __Pyx_c_abs_float(z)     (cabsf(z))
        #define __Pyx_c_pow_float(a, b)  (cpowf(a, b))
    #endif
 #endif
#else
    static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex);
    static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
    #if 1
        static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
        static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex);
    #endif
#endif

/* Arithmetic.proto */
#if CYTHON_CCOMPLEX
    #define __Pyx_c_eq_double(a, b)   ((a)==(b))
    #define __Pyx_c_sum_double(a, b)  ((a)+(b))
    #define __Pyx_c_diff_double(a, b) ((a)-(b))
    #define __Pyx_c_prod_double(a, b) ((a)*(b))
    #define __Pyx_c_quot_double(a, b) ((a)/(b))
    #define __Pyx_c_neg_double(a)     (-(a))
  #ifdef __cplusplus
    #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
    #define __Pyx_c_conj_double(z)    (::std::conj(z))
    #if 1
        #define __Pyx_c_abs_double(z)     (::std::abs(z))
        #define __Pyx_c_pow_double(a, b)  (::std::pow(a, b))
    #endif
  #else
    #define __Pyx_c_is_zero_double(z) ((z)==0)
    #define __Pyx_c_conj_double(z)    (conj(z))
    #if 1
        #define __Pyx_c_abs_double(z)     (cabs(z))
        #define __Pyx_c_pow_double(a, b)  (cpow(a, b))
    #endif
 #endif
#else
    static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex);
    static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex);
    #if 1
        static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex);
        static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex);
    #endif
#endif

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);

/* CIntFromPy.proto */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint16_t(uint16_t value);

/* CIntFromPy.proto */
static CYTHON_INLINE uint16_t __Pyx_PyInt_As_uint16_t(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value);

/* CIntFromPy.proto */
static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint32_t(uint32_t value);

/* CIntFromPy.proto */
static CYTHON_INLINE uint32_t __Pyx_PyInt_As_uint32_t(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint64_t(uint64_t value);

/* CIntFromPy.proto */
static CYTHON_INLINE uint64_t __Pyx_PyInt_As_uint64_t(PyObject *);

/* MemviewSliceCopyTemplate.proto */
static __Pyx_memviewslice
__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
                                 const char *mode, int ndim,
                                 size_t sizeof_dtype, int contig_flag,
                                 int dtype_is_object);

/* CIntFromPy.proto */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);

/* CIntFromPy.proto */
static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_t_5dysgu_5graph_ReadEnum_t value);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_char(unsigned char value);

/* CIntFromPy.proto */
static CYTHON_INLINE __pyx_t_5dysgu_5graph_ReadEnum_t __Pyx_PyInt_As___pyx_t_5dysgu_5graph_ReadEnum_t(PyObject *);

/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_long(unsigned long value);

/* CIntFromPy.proto */
static CYTHON_INLINE unsigned long __Pyx_PyInt_As_unsigned_long(PyObject *);

/* CIntFromPy.proto */
static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *);

/* CheckBinaryVersion.proto */
static int __Pyx_check_binary_version(void);

/* FunctionImport.proto */
static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig);

/* InitStrings.proto */
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);

static void __pyx_f_5dysgu_5graph_10ClipScoper__add_m_find_candidates(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, PyObject *__pyx_v_clip_seq, int __pyx_v_name, int __pyx_v_idx, int __pyx_v_position, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &__pyx_v_clip_table, robin_hood::unordered_set<int>  &__pyx_v_clustered_nodes); /* proto*/
static void __pyx_f_5dysgu_5graph_10ClipScoper__refresh_scope(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, std::deque<std::pair<int,int> >  &__pyx_v_scope, int __pyx_v_position, MinimizerTable &__pyx_v_mm_table, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &__pyx_v_clip_table, int __pyx_v_index); /* proto*/
static void __pyx_f_5dysgu_5graph_10ClipScoper__insert(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, PyObject *__pyx_v_seq, int __pyx_v_cigar_start, int __pyx_v_cigar_end, int __pyx_v_input_read, int __pyx_v_position, robin_hood::unordered_set<int>  &__pyx_v_clustered_nodes); /* proto*/
static void __pyx_f_5dysgu_5graph_10ClipScoper_update(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, PyObject *__pyx_v_r, int __pyx_v_input_read, int __pyx_v_chrom, int __pyx_v_position, robin_hood::unordered_set<int>  &__pyx_v_clustered_nodes); /* proto*/
static void __pyx_f_5dysgu_5graph_15PairedEndScoper_empty_scopes(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self); /* proto*/
static std::vector<int>  __pyx_f_5dysgu_5graph_15PairedEndScoper_find_other_nodes(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, int __pyx_v_node_name, int __pyx_v_current_chrom, int __pyx_v_current_pos, int __pyx_v_chrom2, int __pyx_v_pos2, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum, int __pyx_v_length_from_cigar, int __pyx_v_trust_ins_len); /* proto*/
static void __pyx_f_5dysgu_5graph_15PairedEndScoper_add_item(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, int __pyx_v_node_name, int __pyx_v_current_chrom, int __pyx_v_current_pos, int __pyx_v_chrom2, int __pyx_v_pos2, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum, int __pyx_v_length_from_cigar); /* proto*/
static void __pyx_f_5dysgu_5graph_13TemplateEdges_add(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self, PyObject *__pyx_v_template_name, int __pyx_v_flag, int __pyx_v_node, int __pyx_v_query_start); /* proto*/
static void __pyx_f_5dysgu_5graph_10NodeToName_append(struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self, long __pyx_v_a, int __pyx_v_b, int __pyx_v_c, int __pyx_v_d, long __pyx_v_e, int __pyx_v_f, int __pyx_v_g); /* proto*/
static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *__pyx_v_self); /* proto*/
static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto*/
static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj); /* proto*/
static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_dst, PyObject *__pyx_v_src); /* proto*/
static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memoryview_obj *__pyx_v_self, struct __pyx_memoryview_obj *__pyx_v_dst, PyObject *__pyx_v_value); /* proto*/
static PyObject *__pyx_memoryview_setitem_indexed(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto*/
static PyObject *__pyx_memoryview_convert_item_to_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/
static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/
static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/
static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/

/* Module declarations from 'cpython.buffer' */

/* Module declarations from 'libc.string' */

/* Module declarations from 'libc.stdio' */

/* Module declarations from '__builtin__' */

/* Module declarations from 'cpython.type' */
static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;

/* Module declarations from 'cpython.version' */

/* Module declarations from 'cpython.exc' */

/* Module declarations from 'cpython.module' */

/* Module declarations from 'cpython.mem' */

/* Module declarations from 'cpython.tuple' */

/* Module declarations from 'cpython.list' */

/* Module declarations from 'cpython.sequence' */

/* Module declarations from 'cpython.mapping' */

/* Module declarations from 'cpython.iterator' */

/* Module declarations from 'cpython.number' */

/* Module declarations from 'cpython.int' */

/* Module declarations from '__builtin__' */

/* Module declarations from 'cpython.bool' */
static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0;

/* Module declarations from 'cpython.long' */

/* Module declarations from 'cpython.float' */

/* Module declarations from '__builtin__' */

/* Module declarations from 'cpython.complex' */
static PyTypeObject *__pyx_ptype_7cpython_7complex_complex = 0;

/* Module declarations from 'cpython.string' */

/* Module declarations from 'cpython.unicode' */

/* Module declarations from 'cpython.dict' */

/* Module declarations from 'cpython.instance' */

/* Module declarations from 'cpython.function' */

/* Module declarations from 'cpython.method' */

/* Module declarations from 'cpython.weakref' */

/* Module declarations from 'cpython.getargs' */

/* Module declarations from 'cpython.pythread' */

/* Module declarations from 'cpython.pystate' */

/* Module declarations from 'cpython.cobject' */

/* Module declarations from 'cpython.oldbuffer' */

/* Module declarations from 'cpython.set' */

/* Module declarations from 'cpython.bytes' */

/* Module declarations from 'cpython.pycapsule' */

/* Module declarations from 'cpython' */

/* Module declarations from 'cpython.object' */

/* Module declarations from 'cpython.ref' */

/* Module declarations from 'numpy' */

/* Module declarations from 'numpy' */
static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
static PyTypeObject *__pyx_ptype_5numpy_generic = 0;
static PyTypeObject *__pyx_ptype_5numpy_number = 0;
static PyTypeObject *__pyx_ptype_5numpy_integer = 0;
static PyTypeObject *__pyx_ptype_5numpy_signedinteger = 0;
static PyTypeObject *__pyx_ptype_5numpy_unsignedinteger = 0;
static PyTypeObject *__pyx_ptype_5numpy_inexact = 0;
static PyTypeObject *__pyx_ptype_5numpy_floating = 0;
static PyTypeObject *__pyx_ptype_5numpy_complexfloating = 0;
static PyTypeObject *__pyx_ptype_5numpy_flexible = 0;
static PyTypeObject *__pyx_ptype_5numpy_character = 0;
static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;

/* Module declarations from 'cython.view' */

/* Module declarations from 'cython' */

/* Module declarations from 'array' */

/* Module declarations from 'cpython.array' */
static PyTypeObject *__pyx_ptype_7cpython_5array_array = 0;
static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *, char *, Py_ssize_t); /*proto*/

/* Module declarations from 'libcpp.vector' */

/* Module declarations from 'libcpp.utility' */

/* Module declarations from 'libcpp.pair' */

/* Module declarations from 'libcpp.unordered_map' */

/* Module declarations from 'libc.stdint' */

/* Module declarations from 'dysgu.map_set_utils' */
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_BasicIntervalTree = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_DiGraph = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_SimpleGraph = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_Int2IntMap = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_Py_IntSet = 0;
static PyTypeObject *__pyx_ptype_5dysgu_13map_set_utils_EventResult = 0;
static PyObject *(*__pyx_f_5dysgu_13map_set_utils_clip_sizes)(PyObject *); /*proto*/
static PyObject *(*__pyx_f_5dysgu_13map_set_utils_clip_sizes_hard)(PyObject *); /*proto*/
static int (*__pyx_f_5dysgu_13map_set_utils_cigar_clip)(PyObject *, int); /*proto*/
static int (*__pyx_f_5dysgu_13map_set_utils_is_reciprocal_overlapping)(int, int, int, int); /*proto*/
static int (*__pyx_f_5dysgu_13map_set_utils_span_position_distance)(int, int, int, int, float, float, __pyx_t_5dysgu_13map_set_utils_ReadEnum_t, int, int, int, int); /*proto*/

/* Module declarations from 'libcpp.string' */

/* Module declarations from 'libcpp.deque' */

/* Module declarations from 'libc.stdlib' */

/* Module declarations from 'posix.types' */

/* Module declarations from 'pysam.libchtslib' */
static PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HTSFile = 0;

/* Module declarations from 'pysam.libcfaidx' */
static PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastaFile = 0;
static PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastqProxy = 0;
static PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastxRecord = 0;
static PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastxFile = 0;
static PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_FastqFile = 0;
static PyTypeObject *__pyx_ptype_5pysam_9libcfaidx_Fastafile = 0;

/* Module declarations from 'pysam.libcalignmentfile' */
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRow = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll = 0;
static PyTypeObject *__pyx_ptype_5pysam_17libcalignmentfile_IndexedReads = 0;

/* Module declarations from 'pysam.libcalignedsegment' */
static PyTypeObject *__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment = 0;
static PyTypeObject *__pyx_ptype_5pysam_18libcalignedsegment_PileupColumn = 0;
static PyTypeObject *__pyx_ptype_5pysam_18libcalignedsegment_PileupRead = 0;

/* Module declarations from 'dysgu' */

/* Module declarations from 'dysgu.graph' */
static PyTypeObject *__pyx_ptype_5dysgu_5graph_ClipScoper = 0;
static PyTypeObject *__pyx_ptype_5dysgu_5graph_PairedEndScoper = 0;
static PyTypeObject *__pyx_ptype_5dysgu_5graph_TemplateEdges = 0;
static PyTypeObject *__pyx_ptype_5dysgu_5graph_NodeName = 0;
static PyTypeObject *__pyx_ptype_5dysgu_5graph_NodeToName = 0;
static PyTypeObject *__pyx_array_type = 0;
static PyTypeObject *__pyx_MemviewEnum_type = 0;
static PyTypeObject *__pyx_memoryview_type = 0;
static PyTypeObject *__pyx_memoryviewslice_type = 0;
static PyObject *generic = 0;
static PyObject *strided = 0;
static PyObject *indirect = 0;
static PyObject *contiguous = 0;
static PyObject *indirect_contiguous = 0;
static int __pyx_memoryview_thread_locks_used;
static PyThread_type_lock __pyx_memoryview_thread_locks[8];
static void __pyx_f_5dysgu_5graph_sliding_window_minimum(int, int, PyObject *, robin_hood::unordered_set<long>  &); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_left_soft_clips(PyObject *, int); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_right_soft_clips(PyObject *, int); /*proto*/
static uint64_t __pyx_f_5dysgu_5graph_pair_to_int64(uint32_t, uint32_t); /*proto*/
static uint32_t __pyx_f_5dysgu_5graph_int64_left(uint64_t); /*proto*/
static uint32_t __pyx_f_5dysgu_5graph_int64_right(uint64_t); /*proto*/
static struct __pyx_t_5dysgu_5graph_LocalVal __pyx_f_5dysgu_5graph_make_local_val(int, int, int, __pyx_t_5dysgu_5graph_ReadEnum_t, int); /*proto*/
static void __pyx_f_5dysgu_5graph_add_template_edges(PyObject *, struct __pyx_obj_5dysgu_5graph_TemplateEdges *); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_get_query_pos_from_cigarstring(PyObject *, PyObject *); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_get_query_pos_from_cigartuples(PyObject *); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_alignments_from_sa_tag(PyObject *, PyObject *, PyObject *, PyObject *, PyObject *); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_connect_right(PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_connect_left(PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, PyObject *); /*proto*/
static int __pyx_f_5dysgu_5graph_cluster_clipped(PyObject *, PyObject *, __pyx_t_5dysgu_5graph_ClipScoper_t, PyObject *, PyObject *, PyObject *); /*proto*/
static void __pyx_f_5dysgu_5graph_add_to_graph(PyObject *, struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, __pyx_t_5dysgu_5graph_PairedEndScoper_t, __pyx_t_5dysgu_5graph_TemplateEdges_t, struct __pyx_obj_5dysgu_5graph_NodeToName *, PyObject *, int, int, PyObject *, int, int, int, int, __pyx_t_5dysgu_5graph_ClipScoper_t, __pyx_t_5dysgu_5graph_ReadEnum_t, int, int, int, int, PyObject *, int, int); /*proto*/
static int __pyx_f_5dysgu_5graph_good_quality_clip(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int); /*proto*/
static void __pyx_f_5dysgu_5graph_process_alignment(PyObject *, struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *, int, int, PyObject *, PyObject *, int, __pyx_t_5dysgu_5graph_PairedEndScoper_t, int, int, int, long, PyObject *, __pyx_t_5dysgu_5graph_TemplateEdges_t, struct __pyx_obj_5dysgu_5graph_NodeToName *, int, int, __pyx_t_5dysgu_5graph_ClipScoper_t, __pyx_t_5dysgu_5graph_ReadEnum_t, PyObject *, int, PyObject *, int, int); /*proto*/
static struct __pyx_t_5dysgu_5graph_CigarEvent __pyx_f_5dysgu_5graph_make_cigar_event(int, int, int, int, int, __pyx_t_5dysgu_5graph_ReadEnum_t); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_construct_graph(PyObject *, PyObject *, int, int, int __pyx_skip_dispatch, struct __pyx_opt_args_5dysgu_5graph_construct_graph *__pyx_optional_args); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_BFS_local(PyObject *, int, robin_hood::unordered_set<int>  &); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_get_partitions(PyObject *, PyObject *); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_count_support_between(PyObject *, PyObject *, int); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_break_large_component(PyObject *, PyObject *, int, int __pyx_skip_dispatch); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_proc_component(PyObject *, PyObject *, PyObject *, PyObject *, PyObject *, int, int, int, PyObject *, int __pyx_skip_dispatch); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph___pyx_unpickle_TemplateEdges__set_state(struct __pyx_obj_5dysgu_5graph_TemplateEdges *, PyObject *); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph___pyx_unpickle_NodeName__set_state(struct __pyx_obj_5dysgu_5graph_NodeName *, PyObject *); /*proto*/
static CYTHON_INLINE PyObject *__pyx_convert_PyObject_string_to_py_std__in_string(std::string const &); /*proto*/
static CYTHON_INLINE PyObject *__pyx_convert_PyUnicode_string_to_py_std__in_string(std::string const &); /*proto*/
static CYTHON_INLINE PyObject *__pyx_convert_PyStr_string_to_py_std__in_string(std::string const &); /*proto*/
static CYTHON_INLINE PyObject *__pyx_convert_PyBytes_string_to_py_std__in_string(std::string const &); /*proto*/
static CYTHON_INLINE PyObject *__pyx_convert_PyByteArray_string_to_py_std__in_string(std::string const &); /*proto*/
static PyObject *__pyx_convert_vector_to_py_int(const std::vector<int>  &); /*proto*/
static PyObject *__pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___(std::unordered_map<std::string,std::vector<int> >  const &); /*proto*/
static std::string __pyx_convert_string_from_py_std__in_string(PyObject *); /*proto*/
static std::vector<int>  __pyx_convert_vector_from_py_int(PyObject *); /*proto*/
static std::unordered_map<std::string,std::vector<int> >  __pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___(PyObject *); /*proto*/
static struct __pyx_array_obj *__pyx_array_new(PyObject *, Py_ssize_t, char *, char *, char *); /*proto*/
static void *__pyx_align_pointer(void *, size_t); /*proto*/
static PyObject *__pyx_memoryview_new(PyObject *, int, int, __Pyx_TypeInfo *); /*proto*/
static CYTHON_INLINE int __pyx_memoryview_check(PyObject *); /*proto*/
static PyObject *_unellipsify(PyObject *, int); /*proto*/
static PyObject *assert_direct_dimensions(Py_ssize_t *, int); /*proto*/
static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_obj *, PyObject *); /*proto*/
static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int, int); /*proto*/
static char *__pyx_pybuffer_index(Py_buffer *, char *, Py_ssize_t, Py_ssize_t); /*proto*/
static int __pyx_memslice_transpose(__Pyx_memviewslice *); /*proto*/
static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice, int, PyObject *(*)(char *), int (*)(char *, PyObject *), int); /*proto*/
static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *); /*proto*/
static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
static Py_ssize_t abs_py_ssize_t(Py_ssize_t); /*proto*/
static char __pyx_get_best_slice_order(__Pyx_memviewslice *, int); /*proto*/
static void _copy_strided_to_strided(char *, Py_ssize_t *, char *, Py_ssize_t *, Py_ssize_t *, Py_ssize_t *, int, size_t); /*proto*/
static void copy_strided_to_strided(__Pyx_memviewslice *, __Pyx_memviewslice *, int, size_t); /*proto*/
static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *, int); /*proto*/
static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *, Py_ssize_t *, Py_ssize_t, int, char); /*proto*/
static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *, __Pyx_memviewslice *, char, int); /*proto*/
static int __pyx_memoryview_err_extents(int, Py_ssize_t, Py_ssize_t); /*proto*/
static int __pyx_memoryview_err_dim(PyObject *, char *, int); /*proto*/
static int __pyx_memoryview_err(PyObject *, char *); /*proto*/
static int __pyx_memoryview_copy_contents(__Pyx_memviewslice, __Pyx_memviewslice, int, int, int); /*proto*/
static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *, int, int); /*proto*/
static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *, int, int, int); /*proto*/
static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/
static void __pyx_memoryview_refcount_objects_in_slice(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/
static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *, int, size_t, void *, int); /*proto*/
static void __pyx_memoryview__slice_assign_scalar(char *, Py_ssize_t *, Py_ssize_t *, int, size_t, void *); /*proto*/
static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *, PyObject *); /*proto*/
static __Pyx_TypeInfo __Pyx_TypeInfo_unsigned_char__const__ = { "const unsigned char", NULL, sizeof(unsigned char const ), { 0 }, 0, IS_UNSIGNED(unsigned char const ) ? 'U' : 'I', IS_UNSIGNED(unsigned char const ), 0 };
static __Pyx_TypeInfo __Pyx_TypeInfo_unsigned_long = { "unsigned long", NULL, sizeof(unsigned long), { 0 }, 0, IS_UNSIGNED(unsigned long) ? 'U' : 'I', IS_UNSIGNED(unsigned long), 0 };
#define __Pyx_MODULE_NAME "dysgu.graph"
extern int __pyx_module_is_main_dysgu__graph;
int __pyx_module_is_main_dysgu__graph = 0;

/* Implementation of 'dysgu.graph' */
static PyObject *__pyx_builtin_TypeError;
static PyObject *__pyx_builtin_range;
static PyObject *__pyx_builtin_sorted;
static PyObject *__pyx_builtin_enumerate;
static PyObject *__pyx_builtin_ImportError;
static PyObject *__pyx_builtin_MemoryError;
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_Ellipsis;
static PyObject *__pyx_builtin_id;
static PyObject *__pyx_builtin_IndexError;
static const char __pyx_k_D[] = "D";
static const char __pyx_k_G[] = "G";
static const char __pyx_k_I[] = "I";
static const char __pyx_k_L[] = "L";
static const char __pyx_k_O[] = "O";
static const char __pyx_k_c[] = "c";
static const char __pyx_k_f[] = "f";
static const char __pyx_k_h[] = "h";
static const char __pyx_k_i[] = "i";
static const char __pyx_k_k[] = "k";
static const char __pyx_k_l[] = "l";
static const char __pyx_k_m[] = "m";
static const char __pyx_k_p[] = "p";
static const char __pyx_k_s[] = "s";
static const char __pyx_k_t[] = "t";
static const char __pyx_k_v[] = "v";
static const char __pyx_k_w[] = "w";
static const char __pyx_k_SA[] = "SA";
static const char __pyx_k_SH[] = "SH";
static const char __pyx_k__7[] = "-";
static const char __pyx_k__8[] = "+";
static const char __pyx_k__9[] = ";";
static const char __pyx_k_id[] = "id";
static const char __pyx_k_np[] = "np";
static const char __pyx_k_re[] = "re";
static const char __pyx_k_DEL[] = "DEL";
static const char __pyx_k_INS[] = "INS";
static const char __pyx_k_M_X[] = "M=X";
static const char __pyx_k__10[] = "";
static const char __pyx_k__11[] = ",";
static const char __pyx_k__13[] = ".";
static const char __pyx_k_add[] = "add";
static const char __pyx_k_doc[] = "__doc__";
static const char __pyx_k_end[] = "end";
static const char __pyx_k_key[] = "key";
static const char __pyx_k_n2n[] = "n2n";
static const char __pyx_k_new[] = "__new__";
static const char __pyx_k_obj[] = "obj";
static const char __pyx_k_pop[] = "pop";
static const char __pyx_k_pos[] = "pos";
static const char __pyx_k_seq[] = "seq";
static const char __pyx_k_base[] = "base";
static const char __pyx_k_dict[] = "__dict__";
static const char __pyx_k_echo[] = "echo";
static const char __pyx_k_flag[] = "flag";
static const char __pyx_k_info[] = "info";
static const char __pyx_k_init[] = "__init__";
static const char __pyx_k_item[] = "item";
static const char __pyx_k_main[] = "__main__";
static const char __pyx_k_mapq[] = "mapq";
static const char __pyx_k_mode[] = "mode";
static const char __pyx_k_name[] = "name";
static const char __pyx_k_ndim[] = "ndim";
static const char __pyx_k_norm[] = "norm";
static const char __pyx_k_pack[] = "pack";
static const char __pyx_k_self[] = "self";
static const char __pyx_k_site[] = "site";
static const char __pyx_k_size[] = "size";
static const char __pyx_k_step[] = "step";
static const char __pyx_k_stop[] = "stop";
static const char __pyx_k_test[] = "__test__";
static const char __pyx_k_time[] = "time";
static const char __pyx_k_tlen[] = "tlen";
static const char __pyx_k_utf8[] = "utf8";
static const char __pyx_k_ASCII[] = "ASCII";
static const char __pyx_k_Added[] = "Added ";
static const char __pyx_k_array[] = "array";
static const char __pyx_k_chrom[] = "chrom";
static const char __pyx_k_class[] = "__class__";
static const char __pyx_k_count[] = "count";
static const char __pyx_k_debug[] = "debug";
static const char __pyx_k_deque[] = "deque";
static const char __pyx_k_dtype[] = "dtype";
static const char __pyx_k_error[] = "error";
static const char __pyx_k_flags[] = "flags";
static const char __pyx_k_input[] = "input";
static const char __pyx_k_items[] = "items";
static const char __pyx_k_numpy[] = "numpy";
static const char __pyx_k_parts[] = "parts";
static const char __pyx_k_pnext[] = "pnext";
static const char __pyx_k_procs[] = "procs";
static const char __pyx_k_qname[] = "qname";
static const char __pyx_k_range[] = "range";
static const char __pyx_k_reads[] = "reads";
static const char __pyx_k_rname[] = "rname";
static const char __pyx_k_rnext[] = "rnext";
static const char __pyx_k_scope[] = "scope";
static const char __pyx_k_shape[] = "shape";
static const char __pyx_k_sites[] = "sites";
static const char __pyx_k_split[] = "split";
static const char __pyx_k_start[] = "start";
static const char __pyx_k_svlen[] = "svlen";
static const char __pyx_k_append[] = "append";
static const char __pyx_k_chrom2[] = "chrom2";
static const char __pyx_k_clip_l[] = "clip_l";
static const char __pyx_k_encode[] = "encode";
static const char __pyx_k_extend[] = "extend";
static const char __pyx_k_format[] = "format";
static const char __pyx_k_gettid[] = "gettid";
static const char __pyx_k_header[] = "header";
static const char __pyx_k_import[] = "__import__";
static const char __pyx_k_infile[] = "infile";
static const char __pyx_k_left_p[] = "left_p";
static const char __pyx_k_length[] = "length";
static const char __pyx_k_lookup[] = "lookup";
static const char __pyx_k_module[] = "__module__";
static const char __pyx_k_name_2[] = "__name__";
static const char __pyx_k_pickle[] = "pickle";
static const char __pyx_k_reduce[] = "__reduce__";
static const char __pyx_k_sorted[] = "sorted";
static const char __pyx_k_struct[] = "struct";
static const char __pyx_k_svtype[] = "svtype";
static const char __pyx_k_thresh[] = "thresh";
static const char __pyx_k_uint32[] = "uint32";
static const char __pyx_k_unpack[] = "unpack";
static const char __pyx_k_update[] = "update";
static const char __pyx_k_weight[] = "weight";
static const char __pyx_k_addEdge[] = "addEdge";
static const char __pyx_k_addNode[] = "addNode";
static const char __pyx_k_contigs[] = "contigs";
static const char __pyx_k_d_A_Z_1[] = "(\\d+)([A-Z]{1})";
static const char __pyx_k_findall[] = "findall";
static const char __pyx_k_fortran[] = "fortran";
static const char __pyx_k_get_tag[] = "get_tag";
static const char __pyx_k_getitem[] = "__getitem__";
static const char __pyx_k_hasEdge[] = "hasEdge";
static const char __pyx_k_has_tag[] = "has_tag";
static const char __pyx_k_logging[] = "logging";
static const char __pyx_k_low_mem[] = "low_mem";
static const char __pyx_k_memview[] = "memview";
static const char __pyx_k_mm_only[] = "mm_only";
static const char __pyx_k_popleft[] = "popleft";
static const char __pyx_k_prepare[] = "__prepare__";
static const char __pyx_k_right_p[] = "right_p";
static const char __pyx_k_Ellipsis[] = "Ellipsis";
static const char __pyx_k_NodeName[] = "NodeName";
static const char __pyx_k_contains[] = "__contains__";
static const char __pyx_k_encoding[] = "encoding";
static const char __pyx_k_fromiter[] = "fromiter";
static const char __pyx_k_getstate[] = "__getstate__";
static const char __pyx_k_itemsize[] = "itemsize";
static const char __pyx_k_left_dis[] = "left_dis";
static const char __pyx_k_max_dist[] = "max_dist";
static const char __pyx_k_pe_scope[] = "pe_scope";
static const char __pyx_k_pyx_type[] = "__pyx_type";
static const char __pyx_k_qualname[] = "__qualname__";
static const char __pyx_k_s_within[] = "s_within";
static const char __pyx_k_setstate[] = "__setstate__";
static const char __pyx_k_temp_dir[] = "temp_dir";
static const char __pyx_k_SiteAdder[] = "SiteAdder";
static const char __pyx_k_TypeError[] = "TypeError";
static const char __pyx_k_clst_dist[] = "clst_dist";
static const char __pyx_k_component[] = "component";
static const char __pyx_k_enumerate[] = "enumerate";
static const char __pyx_k_event_pos[] = "event_pos";
static const char __pyx_k_iteritems[] = "iteritems";
static const char __pyx_k_metaclass[] = "__metaclass__";
static const char __pyx_k_neighbors[] = "neighbors";
static const char __pyx_k_node_name[] = "node_name";
static const char __pyx_k_pyx_state[] = "__pyx_state";
static const char __pyx_k_read_enum[] = "read_enum";
static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
static const char __pyx_k_right_dis[] = "right_dis";
static const char __pyx_k_s_between[] = "s_between";
static const char __pyx_k_ClipScoper[] = "ClipScoper";
static const char __pyx_k_IndexError[] = "IndexError";
static const char __pyx_k_NodeToName[] = "NodeToName";
static const char __pyx_k_SortedList[] = "SortedList";
static const char __pyx_k_ValueError[] = "ValueError";
static const char __pyx_k_file_index[] = "file_index";
static const char __pyx_k_left_index[] = "left_index";
static const char __pyx_k_namedtuple[] = "namedtuple";
static const char __pyx_k_paired_end[] = "paired_end";
static const char __pyx_k_pyx_result[] = "__pyx_result";
static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
static const char __pyx_k_scope_back[] = "scope_back";
static const char __pyx_k_scope_dist[] = "scope_dist";
static const char __pyx_k_sortedlist[] = "sortedlist";
static const char __pyx_k_spd_thresh[] = "spd_thresh";
static const char __pyx_k_ImportError[] = "ImportError";
static const char __pyx_k_MemoryError[] = "MemoryError";
static const char __pyx_k_PickleError[] = "PickleError";
static const char __pyx_k_bisect_left[] = "bisect_left";
static const char __pyx_k_cigar_index[] = "cigar_index";
static const char __pyx_k_cigartuples[] = "cigartuples";
static const char __pyx_k_clip_length[] = "clip_length";
static const char __pyx_k_collections[] = "collections";
static const char __pyx_k_defaultdict[] = "defaultdict";
static const char __pyx_k_dysgu_graph[] = "dysgu.graph";
static const char __pyx_k_intersecter[] = "intersecter";
static const char __pyx_k_iter_genome[] = "iter_genome";
static const char __pyx_k_mapq_thresh[] = "mapq_thresh";
static const char __pyx_k_min_support[] = "min_support";
static const char __pyx_k_min_sv_size[] = "min_sv_size";
static const char __pyx_k_norm_thresh[] = "norm_thresh";
static const char __pyx_k_nreferences[] = "nreferences";
static const char __pyx_k_read_buffer[] = "read_buffer";
static const char __pyx_k_read_length[] = "read_length";
static const char __pyx_k_scope_front[] = "scope_front";
static const char __pyx_k_sites_index[] = "sites_index";
static const char __pyx_k_sites_queue[] = "sites_queue";
static const char __pyx_k_sites_scope[] = "sites_scope";
static const char __pyx_k_add_to_scope[] = "add_to_scope";
static const char __pyx_k_cluster_dist[] = "cluster_dist";
static const char __pyx_k_n_references[] = "n_references";
static const char __pyx_k_node_to_name[] = "node_to_name";
static const char __pyx_k_pyx_checksum[] = "__pyx_checksum";
static const char __pyx_k_stringsource[] = "stringsource";
static const char __pyx_k_TemplateEdges[] = "TemplateEdges";
static const char __pyx_k_add_any_sites[] = "add_any_sites";
static const char __pyx_k_add_to_buffer[] = "add_to_buffer";
static const char __pyx_k_current_chrom[] = "current_chrom";
static const char __pyx_k_current_index[] = "current_index";
static const char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer";
static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
static const char __pyx_k_reference_end[] = "reference_end";
static const char __pyx_k_sites_index_r[] = "sites_index_r";
static const char __pyx_k_trust_ins_len[] = "trust_ins_len";
static const char __pyx_k_BadClipCounter[] = "BadClipCounter";
static const char __pyx_k_dysgu_io_funcs[] = "dysgu.io_funcs";
static const char __pyx_k_genome_scanner[] = "genome_scanner";
static const char __pyx_k_minimizer_dist[] = "minimizer_dist";
static const char __pyx_k_PairedEndScoper[] = "PairedEndScoper";
static const char __pyx_k_View_MemoryView[] = "View.MemoryView";
static const char __pyx_k_allocate_buffer[] = "allocate_buffer";
static const char __pyx_k_clustering_dist[] = "clustering_dist";
static const char __pyx_k_dtype_is_object[] = "dtype_is_object";
static const char __pyx_k_dysgu_graph_pyx[] = "dysgu/graph.pyx";
static const char __pyx_k_overlap_regions[] = "overlap_regions";
static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError";
static const char __pyx_k_query_qualities[] = "query_qualities";
static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
static const char __pyx_k_SiteAdder___init[] = "SiteAdder.__init__";
static const char __pyx_k_sortedcontainers[] = "sortedcontainers";
static const char __pyx_k_find_nearest_site[] = "find_nearest_site";
static const char __pyx_k_infer_read_length[] = "infer_read_length";
static const char __pyx_k_minimizer_breadth[] = "minimizer_breadth";
static const char __pyx_k_pyx_unpickle_Enum[] = "__pyx_unpickle_Enum";
static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
static const char __pyx_k_strided_and_direct[] = "<strided and direct>";
static const char __pyx_k_SiteAdder___getitem[] = "SiteAdder.__getitem__";
static const char __pyx_k_dysgu_extra_metrics[] = "dysgu.extra_metrics";
static const char __pyx_k_dysgu_map_set_utils[] = "dysgu.map_set_utils";
static const char __pyx_k_SiteAdder___contains[] = "SiteAdder.__contains__";
static const char __pyx_k_strided_and_indirect[] = "<strided and indirect>";
static const char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>";
static const char __pyx_k_pyx_unpickle_NodeName[] = "__pyx_unpickle_NodeName";
static const char __pyx_k_query_alignment_start[] = "query_alignment_start";
static const char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>";
static const char __pyx_k_SiteAdder_add_to_scope[] = "SiteAdder.add_to_scope";
static const char __pyx_k_MemoryView_of_r_at_0x_x[] = "<MemoryView of %r at 0x%x>";
static const char __pyx_k_SiteAdder_add_any_sites[] = "SiteAdder.add_any_sites";
static const char __pyx_k_contiguous_and_indirect[] = "<contiguous and indirect>";
static const char __pyx_k_Cannot_index_with_type_s[] = "Cannot index with type '%s'";
static const char __pyx_k_minimizer_support_thresh[] = "minimizer_support_thresh";
static const char __pyx_k_Invalid_shape_in_axis_d_d[] = "Invalid shape in axis %d: %d.";
static const char __pyx_k_variants_from_input_sites[] = " variants from input sites";
static const char __pyx_k_pyx_unpickle_TemplateEdges[] = "__pyx_unpickle_TemplateEdges";
static const char __pyx_k_SiteAdder_find_nearest_site[] = "SiteAdder.find_nearest_site";
static const char __pyx_k_itemsize_0_for_cython_array[] = "itemsize <= 0 for cython.array";
static const char __pyx_k_unable_to_allocate_array_data[] = "unable to allocate array data.";
static const char __pyx_k_strided_and_direct_or_indirect[] = "<strided and direct or indirect>";
static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import";
static const char __pyx_k_Buffer_view_does_not_expose_stri[] = "Buffer view does not expose strides";
static const char __pyx_k_Building_graph_with_clustering_b[] = "Building graph with clustering {} bp";
static const char __pyx_k_Can_only_create_a_buffer_that_is[] = "Can only create a buffer that is contiguous in memory.";
static const char __pyx_k_Cannot_assign_to_read_only_memor[] = "Cannot assign to read-only memoryview";
static const char __pyx_k_Cannot_create_writable_memory_vi[] = "Cannot create writable memory view from read-only memoryview";
static const char __pyx_k_Empty_shape_tuple_for_cython_arr[] = "Empty shape tuple for cython.array";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0[] = "Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))";
static const char __pyx_k_Indirect_dimensions_not_supporte[] = "Indirect dimensions not supported";
static const char __pyx_k_Invalid_mode_expected_c_or_fortr[] = "Invalid mode, expected 'c' or 'fortran', got %s";
static const char __pyx_k_Out_of_bounds_on_buffer_access_a[] = "Out of bounds on buffer access (axis %d)";
static const char __pyx_k_SiteAdder___init___locals_lambda[] = "SiteAdder.__init__.<locals>.<lambda>";
static const char __pyx_k_SiteAdder_add_to_scope_locals_la[] = "SiteAdder.add_to_scope.<locals>.<lambda>";
static const char __pyx_k_Unable_to_convert_item_to_object[] = "Unable to convert item to object";
static const char __pyx_k_alignments_from_sa_tag_locals_la[] = "alignments_from_sa_tag.<locals>.<lambda>";
static const char __pyx_k_got_differing_extents_in_dimensi[] = "got differing extents in dimension %d (got %d and %d)";
static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__";
static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
static const char __pyx_k_self_chrom_scope_self_loci_canno[] = "self.chrom_scope,self.loci cannot be converted to a Python object for pickling";
static const char __pyx_k_self_clip_table_left_self_clip_t[] = "self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling";
static const char __pyx_k_unable_to_allocate_shape_and_str[] = "unable to allocate shape and strides.";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_2[] = "Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))";
static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_3[] = "Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))";
static PyObject *__pyx_n_s_ASCII;
static PyObject *__pyx_kp_u_Added;
static PyObject *__pyx_n_s_BadClipCounter;
static PyObject *__pyx_kp_s_Buffer_view_does_not_expose_stri;
static PyObject *__pyx_kp_u_Building_graph_with_clustering_b;
static PyObject *__pyx_kp_s_Can_only_create_a_buffer_that_is;
static PyObject *__pyx_kp_s_Cannot_assign_to_read_only_memor;
static PyObject *__pyx_kp_s_Cannot_create_writable_memory_vi;
static PyObject *__pyx_kp_s_Cannot_index_with_type_s;
static PyObject *__pyx_n_s_ClipScoper;
static PyObject *__pyx_n_u_D;
static PyObject *__pyx_n_u_DEL;
static PyObject *__pyx_n_s_Ellipsis;
static PyObject *__pyx_kp_s_Empty_shape_tuple_for_cython_arr;
static PyObject *__pyx_n_s_G;
static PyObject *__pyx_n_u_I;
static PyObject *__pyx_n_u_INS;
static PyObject *__pyx_n_s_ImportError;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_2;
static PyObject *__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_3;
static PyObject *__pyx_n_s_IndexError;
static PyObject *__pyx_kp_s_Indirect_dimensions_not_supporte;
static PyObject *__pyx_kp_s_Invalid_mode_expected_c_or_fortr;
static PyObject *__pyx_kp_s_Invalid_shape_in_axis_d_d;
static PyObject *__pyx_n_u_L;
static PyObject *__pyx_kp_u_M_X;
static PyObject *__pyx_n_s_MemoryError;
static PyObject *__pyx_kp_s_MemoryView_of_r_at_0x_x;
static PyObject *__pyx_kp_s_MemoryView_of_r_object;
static PyObject *__pyx_n_s_NodeName;
static PyObject *__pyx_n_s_NodeToName;
static PyObject *__pyx_n_b_O;
static PyObject *__pyx_kp_s_Out_of_bounds_on_buffer_access_a;
static PyObject *__pyx_n_s_PairedEndScoper;
static PyObject *__pyx_n_s_PickleError;
static PyObject *__pyx_n_u_SA;
static PyObject *__pyx_n_u_SH;
static PyObject *__pyx_n_s_SiteAdder;
static PyObject *__pyx_n_s_SiteAdder___contains;
static PyObject *__pyx_n_s_SiteAdder___getitem;
static PyObject *__pyx_n_s_SiteAdder___init;
static PyObject *__pyx_n_s_SiteAdder___init___locals_lambda;
static PyObject *__pyx_n_s_SiteAdder_add_any_sites;
static PyObject *__pyx_n_s_SiteAdder_add_to_scope;
static PyObject *__pyx_n_s_SiteAdder_add_to_scope_locals_la;
static PyObject *__pyx_n_s_SiteAdder_find_nearest_site;
static PyObject *__pyx_n_s_SortedList;
static PyObject *__pyx_n_s_TemplateEdges;
static PyObject *__pyx_n_s_TypeError;
static PyObject *__pyx_kp_s_Unable_to_convert_item_to_object;
static PyObject *__pyx_n_s_ValueError;
static PyObject *__pyx_n_s_View_MemoryView;
static PyObject *__pyx_kp_u__10;
static PyObject *__pyx_kp_u__11;
static PyObject *__pyx_kp_u__13;
static PyObject *__pyx_kp_u__7;
static PyObject *__pyx_kp_u__8;
static PyObject *__pyx_kp_u__9;
static PyObject *__pyx_n_s_add;
static PyObject *__pyx_n_s_addEdge;
static PyObject *__pyx_n_s_addNode;
static PyObject *__pyx_n_s_add_any_sites;
static PyObject *__pyx_n_s_add_to_buffer;
static PyObject *__pyx_n_s_add_to_scope;
static PyObject *__pyx_n_s_alignments_from_sa_tag_locals_la;
static PyObject *__pyx_n_s_allocate_buffer;
static PyObject *__pyx_n_s_append;
static PyObject *__pyx_n_s_array;
static PyObject *__pyx_n_s_base;
static PyObject *__pyx_n_s_bisect_left;
static PyObject *__pyx_n_s_c;
static PyObject *__pyx_n_u_c;
static PyObject *__pyx_n_s_chrom;
static PyObject *__pyx_n_s_chrom2;
static PyObject *__pyx_n_s_cigar_index;
static PyObject *__pyx_n_s_cigartuples;
static PyObject *__pyx_n_s_class;
static PyObject *__pyx_n_s_cline_in_traceback;
static PyObject *__pyx_n_s_clip_l;
static PyObject *__pyx_n_s_clip_length;
static PyObject *__pyx_n_s_clst_dist;
static PyObject *__pyx_n_s_cluster_dist;
static PyObject *__pyx_n_s_clustering_dist;
static PyObject *__pyx_n_s_collections;
static PyObject *__pyx_n_s_component;
static PyObject *__pyx_n_s_contains;
static PyObject *__pyx_n_s_contigs;
static PyObject *__pyx_kp_s_contiguous_and_direct;
static PyObject *__pyx_kp_s_contiguous_and_indirect;
static PyObject *__pyx_n_s_count;
static PyObject *__pyx_n_s_current_chrom;
static PyObject *__pyx_n_s_current_index;
static PyObject *__pyx_kp_u_d_A_Z_1;
static PyObject *__pyx_n_s_debug;
static PyObject *__pyx_n_s_defaultdict;
static PyObject *__pyx_n_s_deque;
static PyObject *__pyx_n_s_dict;
static PyObject *__pyx_n_s_doc;
static PyObject *__pyx_n_s_dtype;
static PyObject *__pyx_n_s_dtype_is_object;
static PyObject *__pyx_n_s_dysgu_extra_metrics;
static PyObject *__pyx_n_s_dysgu_graph;
static PyObject *__pyx_kp_s_dysgu_graph_pyx;
static PyObject *__pyx_n_s_dysgu_io_funcs;
static PyObject *__pyx_n_s_dysgu_map_set_utils;
static PyObject *__pyx_n_s_echo;
static PyObject *__pyx_n_s_encode;
static PyObject *__pyx_n_s_encoding;
static PyObject *__pyx_n_s_end;
static PyObject *__pyx_n_s_enumerate;
static PyObject *__pyx_n_s_error;
static PyObject *__pyx_n_s_event_pos;
static PyObject *__pyx_n_s_extend;
static PyObject *__pyx_n_s_f;
static PyObject *__pyx_n_s_file_index;
static PyObject *__pyx_n_s_find_nearest_site;
static PyObject *__pyx_n_s_findall;
static PyObject *__pyx_n_s_flag;
static PyObject *__pyx_n_s_flags;
static PyObject *__pyx_n_s_format;
static PyObject *__pyx_n_s_fortran;
static PyObject *__pyx_n_u_fortran;
static PyObject *__pyx_n_s_fromiter;
static PyObject *__pyx_n_s_genome_scanner;
static PyObject *__pyx_n_s_get_tag;
static PyObject *__pyx_n_s_getitem;
static PyObject *__pyx_n_s_getstate;
static PyObject *__pyx_n_s_gettid;
static PyObject *__pyx_kp_s_got_differing_extents_in_dimensi;
static PyObject *__pyx_n_s_h;
static PyObject *__pyx_n_s_hasEdge;
static PyObject *__pyx_n_s_has_tag;
static PyObject *__pyx_n_s_header;
static PyObject *__pyx_n_s_i;
static PyObject *__pyx_n_s_id;
static PyObject *__pyx_n_s_import;
static PyObject *__pyx_n_s_infer_read_length;
static PyObject *__pyx_n_s_infile;
static PyObject *__pyx_n_s_info;
static PyObject *__pyx_n_u_info;
static PyObject *__pyx_n_s_init;
static PyObject *__pyx_n_u_input;
static PyObject *__pyx_n_s_intersecter;
static PyObject *__pyx_n_s_item;
static PyObject *__pyx_n_s_items;
static PyObject *__pyx_n_s_itemsize;
static PyObject *__pyx_kp_s_itemsize_0_for_cython_array;
static PyObject *__pyx_n_s_iter_genome;
static PyObject *__pyx_n_s_iteritems;
static PyObject *__pyx_n_s_k;
static PyObject *__pyx_n_s_key;
static PyObject *__pyx_n_u_l;
static PyObject *__pyx_n_s_left_dis;
static PyObject *__pyx_n_s_left_index;
static PyObject *__pyx_n_s_left_p;
static PyObject *__pyx_n_s_length;
static PyObject *__pyx_n_s_logging;
static PyObject *__pyx_n_s_lookup;
static PyObject *__pyx_n_s_low_mem;
static PyObject *__pyx_n_s_m;
static PyObject *__pyx_n_s_main;
static PyObject *__pyx_n_s_mapq;
static PyObject *__pyx_n_s_mapq_thresh;
static PyObject *__pyx_n_s_max_dist;
static PyObject *__pyx_n_s_memview;
static PyObject *__pyx_n_s_metaclass;
static PyObject *__pyx_n_s_min_support;
static PyObject *__pyx_n_s_min_sv_size;
static PyObject *__pyx_n_s_minimizer_breadth;
static PyObject *__pyx_n_s_minimizer_dist;
static PyObject *__pyx_n_s_minimizer_support_thresh;
static PyObject *__pyx_n_s_mm_only;
static PyObject *__pyx_n_s_mode;
static PyObject *__pyx_n_s_module;
static PyObject *__pyx_n_u_n2n;
static PyObject *__pyx_n_s_n_references;
static PyObject *__pyx_n_s_name;
static PyObject *__pyx_n_s_name_2;
static PyObject *__pyx_n_s_namedtuple;
static PyObject *__pyx_n_s_ndim;
static PyObject *__pyx_n_s_neighbors;
static PyObject *__pyx_n_s_new;
static PyObject *__pyx_kp_s_no_default___reduce___due_to_non;
static PyObject *__pyx_n_s_node_name;
static PyObject *__pyx_n_s_node_to_name;
static PyObject *__pyx_n_s_norm;
static PyObject *__pyx_n_s_norm_thresh;
static PyObject *__pyx_n_s_np;
static PyObject *__pyx_n_s_nreferences;
static PyObject *__pyx_n_s_numpy;
static PyObject *__pyx_kp_u_numpy_core_multiarray_failed_to;
static PyObject *__pyx_kp_u_numpy_core_umath_failed_to_impor;
static PyObject *__pyx_n_s_obj;
static PyObject *__pyx_n_s_overlap_regions;
static PyObject *__pyx_n_s_p;
static PyObject *__pyx_n_s_pack;
static PyObject *__pyx_n_s_paired_end;
static PyObject *__pyx_n_u_parts;
static PyObject *__pyx_n_s_pe_scope;
static PyObject *__pyx_n_s_pickle;
static PyObject *__pyx_n_s_pnext;
static PyObject *__pyx_n_s_pop;
static PyObject *__pyx_n_s_popleft;
static PyObject *__pyx_n_s_pos;
static PyObject *__pyx_n_s_prepare;
static PyObject *__pyx_n_s_procs;
static PyObject *__pyx_n_s_pyx_PickleError;
static PyObject *__pyx_n_s_pyx_checksum;
static PyObject *__pyx_n_s_pyx_getbuffer;
static PyObject *__pyx_n_s_pyx_result;
static PyObject *__pyx_n_s_pyx_state;
static PyObject *__pyx_n_s_pyx_type;
static PyObject *__pyx_n_s_pyx_unpickle_Enum;
static PyObject *__pyx_n_s_pyx_unpickle_NodeName;
static PyObject *__pyx_n_s_pyx_unpickle_TemplateEdges;
static PyObject *__pyx_n_s_pyx_vtable;
static PyObject *__pyx_n_s_qname;
static PyObject *__pyx_n_s_qualname;
static PyObject *__pyx_n_s_query_alignment_start;
static PyObject *__pyx_n_s_query_qualities;
static PyObject *__pyx_n_s_range;
static PyObject *__pyx_n_s_re;
static PyObject *__pyx_n_s_read_buffer;
static PyObject *__pyx_n_s_read_enum;
static PyObject *__pyx_n_s_read_length;
static PyObject *__pyx_n_u_reads;
static PyObject *__pyx_n_s_reduce;
static PyObject *__pyx_n_s_reduce_cython;
static PyObject *__pyx_n_s_reduce_ex;
static PyObject *__pyx_n_s_reference_end;
static PyObject *__pyx_n_s_right_dis;
static PyObject *__pyx_n_s_right_p;
static PyObject *__pyx_n_s_rname;
static PyObject *__pyx_n_s_rnext;
static PyObject *__pyx_n_s_s;
static PyObject *__pyx_n_u_s_between;
static PyObject *__pyx_n_u_s_within;
static PyObject *__pyx_n_s_scope;
static PyObject *__pyx_n_s_scope_back;
static PyObject *__pyx_n_s_scope_dist;
static PyObject *__pyx_n_s_scope_front;
static PyObject *__pyx_n_s_self;
static PyObject *__pyx_kp_s_self_chrom_scope_self_loci_canno;
static PyObject *__pyx_kp_s_self_clip_table_left_self_clip_t;
static PyObject *__pyx_n_s_seq;
static PyObject *__pyx_n_s_setstate;
static PyObject *__pyx_n_s_setstate_cython;
static PyObject *__pyx_n_s_shape;
static PyObject *__pyx_n_s_site;
static PyObject *__pyx_n_s_sites;
static PyObject *__pyx_n_s_sites_index;
static PyObject *__pyx_n_s_sites_index_r;
static PyObject *__pyx_n_s_sites_queue;
static PyObject *__pyx_n_s_sites_scope;
static PyObject *__pyx_n_s_size;
static PyObject *__pyx_n_s_sorted;
static PyObject *__pyx_n_s_sortedcontainers;
static PyObject *__pyx_n_s_sortedlist;
static PyObject *__pyx_n_s_spd_thresh;
static PyObject *__pyx_n_s_split;
static PyObject *__pyx_n_s_start;
static PyObject *__pyx_n_u_start;
static PyObject *__pyx_n_s_step;
static PyObject *__pyx_n_s_stop;
static PyObject *__pyx_kp_s_strided_and_direct;
static PyObject *__pyx_kp_s_strided_and_direct_or_indirect;
static PyObject *__pyx_kp_s_strided_and_indirect;
static PyObject *__pyx_kp_s_stringsource;
static PyObject *__pyx_n_s_struct;
static PyObject *__pyx_n_s_svlen;
static PyObject *__pyx_n_s_svtype;
static PyObject *__pyx_n_s_t;
static PyObject *__pyx_n_s_temp_dir;
static PyObject *__pyx_n_s_test;
static PyObject *__pyx_n_s_thresh;
static PyObject *__pyx_n_s_time;
static PyObject *__pyx_n_s_tlen;
static PyObject *__pyx_n_s_trust_ins_len;
static PyObject *__pyx_n_u_uint32;
static PyObject *__pyx_kp_s_unable_to_allocate_array_data;
static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str;
static PyObject *__pyx_n_s_unpack;
static PyObject *__pyx_n_s_update;
static PyObject *__pyx_n_u_utf8;
static PyObject *__pyx_n_s_v;
static PyObject *__pyx_kp_u_variants_from_input_sites;
static PyObject *__pyx_n_s_w;
static PyObject *__pyx_n_s_weight;
static int __pyx_pf_5dysgu_5graph_10ClipScoper___init__(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, int __pyx_v_max_dist, int __pyx_v_k, int __pyx_v_m, int __pyx_v_clip_length, int __pyx_v_minimizer_support_thresh, int __pyx_v_minimizer_breadth, int __pyx_v_read_length); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_10ClipScoper_2__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_10ClipScoper_4__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_5dysgu_5graph_15PairedEndScoper___init__(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, PyObject *__pyx_v_max_dist, PyObject *__pyx_v_clst_dist, PyObject *__pyx_v_n_references, PyObject *__pyx_v_norm, PyObject *__pyx_v_thresh, PyObject *__pyx_v_paired_end); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_15PairedEndScoper_2__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_15PairedEndScoper_4__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_5dysgu_5graph_13TemplateEdges___init__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_13TemplateEdges_11templates_s___get__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_13TemplateEdges_11templates_s_2__set__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_13TemplateEdges_2__reduce_cython__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_13TemplateEdges_4__setstate_cython__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName___init__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_h, PyObject *__pyx_v_f, PyObject *__pyx_v_p, PyObject *__pyx_v_c, PyObject *__pyx_v_t, PyObject *__pyx_v_cigar_index, PyObject *__pyx_v_event_pos); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_9hash_name___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName_9hash_name_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_4tell___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName_4tell_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_3pos___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName_3pos_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_11cigar_index___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName_11cigar_index_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_9event_pos___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName_9event_pos_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_4flag___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName_4flag_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_5chrom___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static int __pyx_pf_5dysgu_5graph_8NodeName_5chrom_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_2__reduce_cython__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_4__setstate_cython__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_5dysgu_5graph_10NodeToName___cinit__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_10NodeToName_2__getitem__(struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self, PyObject *__pyx_v_idx); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_10NodeToName_4__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_10NodeToName_6__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_lambda_funcdef_lambda(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x); /* proto */
static PyObject *__pyx_lambda_funcdef_lambda1(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_sites); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_2__contains__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_item); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_4__getitem__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_item); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_6find_nearest_site(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_chrom, PyObject *__pyx_v_pos); /* proto */
static PyObject *__pyx_lambda_funcdef_lambda2(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_8add_to_scope(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_site); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_10add_any_sites(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, int __pyx_v_chrom, int __pyx_v_pos, PyObject *__pyx_v_G, __pyx_t_5dysgu_5graph_PairedEndScoper_t __pyx_v_pe_scope, struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_node_to_name, PyObject *__pyx_v_cluster_dist); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_construct_graph(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_genome_scanner, PyObject *__pyx_v_infile, int __pyx_v_max_dist, int __pyx_v_clustering_dist, int __pyx_v_k, int __pyx_v_m, int __pyx_v_clip_l, int __pyx_v_min_sv_size, int __pyx_v_minimizer_support_thresh, int __pyx_v_minimizer_breadth, int __pyx_v_minimizer_dist, int __pyx_v_mapq_thresh, PyObject *__pyx_v_debug, PyObject *__pyx_v_procs, int __pyx_v_paired_end, int __pyx_v_read_length, int __pyx_v_contigs, float __pyx_v_norm_thresh, float __pyx_v_spd_thresh, int __pyx_v_mm_only, PyObject *__pyx_v_sites, int __pyx_v_trust_ins_len, PyObject *__pyx_v_low_mem, PyObject *__pyx_v_temp_dir); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_2break_large_component(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_G, PyObject *__pyx_v_component, int __pyx_v_min_support); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_4proc_component(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_node_to_name, PyObject *__pyx_v_component, PyObject *__pyx_v_read_buffer, PyObject *__pyx_v_infile, PyObject *__pyx_v_G, int __pyx_v_min_support, int __pyx_v_procs, int __pyx_v_paired_end, PyObject *__pyx_v_sites_index); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_6__pyx_unpickle_TemplateEdges(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_5dysgu_5graph_8__pyx_unpickle_NodeName(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags); /* proto */
static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static Py_ssize_t __pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__len__(struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr); /* proto */
static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item); /* proto */
static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_12__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /* proto */
static PyObject *__pyx_pf___pyx_array___reduce_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_array_2__setstate_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name); /* proto */
static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_MemviewEnum___reduce_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_MemviewEnum_2__setstate_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object); /* proto */
static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */
static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryview___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryview_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryviewslice___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
static PyObject *__pyx_pf___pyx_memoryviewslice_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_pf_15View_dot_MemoryView___pyx_unpickle_Enum(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_tp_new_5dysgu_5graph_ClipScoper(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_5dysgu_5graph_PairedEndScoper(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_5dysgu_5graph_TemplateEdges(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_5dysgu_5graph_NodeName(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_5dysgu_5graph_NodeToName(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static __Pyx_CachedCFunction __pyx_umethod_PySet_Type_update = {0, &__pyx_n_s_update, 0, 0, 0};
static PyObject *__pyx_int_0;
static PyObject *__pyx_int_1;
static PyObject *__pyx_int_2;
static PyObject *__pyx_int_4;
static PyObject *__pyx_int_5;
static PyObject *__pyx_int_8;
static PyObject *__pyx_int_16;
static PyObject *__pyx_int_2304;
static PyObject *__pyx_int_19559303;
static PyObject *__pyx_int_49574019;
static PyObject *__pyx_int_68233231;
static PyObject *__pyx_int_78226420;
static PyObject *__pyx_int_112105877;
static PyObject *__pyx_int_136983863;
static PyObject *__pyx_int_138828179;
static PyObject *__pyx_int_154740188;
static PyObject *__pyx_int_184977713;
static PyObject *__pyx_int_neg_1;
static PyObject *__pyx_tuple_;
static PyObject *__pyx_tuple__2;
static PyObject *__pyx_tuple__3;
static PyObject *__pyx_tuple__4;
static PyObject *__pyx_tuple__5;
static PyObject *__pyx_tuple__6;
static PyObject *__pyx_slice__32;
static PyObject *__pyx_tuple__12;
static PyObject *__pyx_tuple__14;
static PyObject *__pyx_tuple__15;
static PyObject *__pyx_tuple__16;
static PyObject *__pyx_tuple__17;
static PyObject *__pyx_tuple__18;
static PyObject *__pyx_tuple__19;
static PyObject *__pyx_tuple__20;
static PyObject *__pyx_tuple__21;
static PyObject *__pyx_tuple__22;
static PyObject *__pyx_tuple__23;
static PyObject *__pyx_tuple__24;
static PyObject *__pyx_tuple__25;
static PyObject *__pyx_tuple__26;
static PyObject *__pyx_tuple__27;
static PyObject *__pyx_tuple__28;
static PyObject *__pyx_tuple__29;
static PyObject *__pyx_tuple__30;
static PyObject *__pyx_tuple__31;
static PyObject *__pyx_tuple__33;
static PyObject *__pyx_tuple__34;
static PyObject *__pyx_tuple__35;
static PyObject *__pyx_tuple__36;
static PyObject *__pyx_tuple__37;
static PyObject *__pyx_tuple__39;
static PyObject *__pyx_tuple__41;
static PyObject *__pyx_tuple__43;
static PyObject *__pyx_tuple__45;
static PyObject *__pyx_tuple__47;
static PyObject *__pyx_tuple__49;
static PyObject *__pyx_tuple__51;
static PyObject *__pyx_tuple__53;
static PyObject *__pyx_tuple__54;
static PyObject *__pyx_tuple__55;
static PyObject *__pyx_tuple__56;
static PyObject *__pyx_tuple__57;
static PyObject *__pyx_tuple__58;
static PyObject *__pyx_codeobj__38;
static PyObject *__pyx_codeobj__40;
static PyObject *__pyx_codeobj__42;
static PyObject *__pyx_codeobj__44;
static PyObject *__pyx_codeobj__46;
static PyObject *__pyx_codeobj__48;
static PyObject *__pyx_codeobj__50;
static PyObject *__pyx_codeobj__52;
static PyObject *__pyx_codeobj__59;
/* Late includes */

/* "dysgu/graph.pyx":72
 * 
 * 
 * cdef void sliding_window_minimum(int k, int m, str s, unordered_set[long]& found):             # <<<<<<<<<<<<<<
 *     """End minimizer
 *     https://github.com/keegancsmith/Sliding-Window-Minimum/blob/master/sliding_window_minimum.py"""
 */

static void __pyx_f_5dysgu_5graph_sliding_window_minimum(int __pyx_v_k, int __pyx_v_m, PyObject *__pyx_v_s, robin_hood::unordered_set<long>  &__pyx_v_found) {
  int __pyx_v_i;
  int __pyx_v_end;
  int __pyx_v_last_idx;
  std::deque<__pyx_t_5dysgu_5graph_cpp_long_pair>  __pyx_v_window2;
  long __pyx_v_hx2;
  PyObject *__pyx_v_s_bytes = 0;
  unsigned char const *__pyx_v_sub_ptr;
  long __pyx_v_minimizer_i;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  unsigned char const *__pyx_t_4;
  int __pyx_t_5;
  int __pyx_t_6;
  __pyx_t_5dysgu_5graph_cpp_long_pair __pyx_t_7;
  long __pyx_t_8;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("sliding_window_minimum", 0);

  /* "dysgu/graph.pyx":75
 *     """End minimizer
 *     https://github.com/keegancsmith/Sliding-Window-Minimum/blob/master/sliding_window_minimum.py"""
 *     cdef int i = 0             # <<<<<<<<<<<<<<
 *     cdef int end = len(s) - m + 1
 *     cdef int last_idx = end - 1
 */
  __pyx_v_i = 0;

  /* "dysgu/graph.pyx":76
 *     https://github.com/keegancsmith/Sliding-Window-Minimum/blob/master/sliding_window_minimum.py"""
 *     cdef int i = 0
 *     cdef int end = len(s) - m + 1             # <<<<<<<<<<<<<<
 *     cdef int last_idx = end - 1
 *     cdef cpp_deque[cpp_long_pair] window2
 */
  if (unlikely(__pyx_v_s == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
    __PYX_ERR(1, 76, __pyx_L1_error)
  }
  __pyx_t_1 = __Pyx_PyUnicode_GET_LENGTH(__pyx_v_s); if (unlikely(__pyx_t_1 == ((Py_ssize_t)-1))) __PYX_ERR(1, 76, __pyx_L1_error)
  __pyx_v_end = ((__pyx_t_1 - __pyx_v_m) + 1);

  /* "dysgu/graph.pyx":77
 *     cdef int i = 0
 *     cdef int end = len(s) - m + 1
 *     cdef int last_idx = end - 1             # <<<<<<<<<<<<<<
 *     cdef cpp_deque[cpp_long_pair] window2
 *     cdef long hx2
 */
  __pyx_v_last_idx = (__pyx_v_end - 1);

  /* "dysgu/graph.pyx":80
 *     cdef cpp_deque[cpp_long_pair] window2
 *     cdef long hx2
 *     cdef bytes s_bytes = bytes(s.encode("ascii"))             # <<<<<<<<<<<<<<
 *     cdef const unsigned char* sub_ptr = s_bytes
 *     with nogil:
 */
  if (unlikely(__pyx_v_s == Py_None)) {
    PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%.30s'", "encode");
    __PYX_ERR(1, 80, __pyx_L1_error)
  }
  __pyx_t_2 = PyUnicode_AsASCIIString(__pyx_v_s); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 80, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyObject_CallOneArg(((PyObject *)(&PyBytes_Type)), __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 80, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_v_s_bytes = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":81
 *     cdef long hx2
 *     cdef bytes s_bytes = bytes(s.encode("ascii"))
 *     cdef const unsigned char* sub_ptr = s_bytes             # <<<<<<<<<<<<<<
 *     with nogil:
 *         while i < end:
 */
  __pyx_t_4 = __Pyx_PyBytes_AsUString(__pyx_v_s_bytes); if (unlikely((!__pyx_t_4) && PyErr_Occurred())) __PYX_ERR(1, 81, __pyx_L1_error)
  __pyx_v_sub_ptr = __pyx_t_4;

  /* "dysgu/graph.pyx":82
 *     cdef bytes s_bytes = bytes(s.encode("ascii"))
 *     cdef const unsigned char* sub_ptr = s_bytes
 *     with nogil:             # <<<<<<<<<<<<<<
 *         while i < end:
 *             hx2 = xxhasher(sub_ptr, m, 42)
 */
  {
      #ifdef WITH_THREAD
      PyThreadState *_save;
      Py_UNBLOCK_THREADS
      __Pyx_FastGIL_Remember();
      #endif
      /*try:*/ {

        /* "dysgu/graph.pyx":83
 *     cdef const unsigned char* sub_ptr = s_bytes
 *     with nogil:
 *         while i < end:             # <<<<<<<<<<<<<<
 *             hx2 = xxhasher(sub_ptr, m, 42)
 *             if i == 0 or i == last_idx:
 */
        while (1) {
          __pyx_t_5 = ((__pyx_v_i < __pyx_v_end) != 0);
          if (!__pyx_t_5) break;

          /* "dysgu/graph.pyx":84
 *     with nogil:
 *         while i < end:
 *             hx2 = xxhasher(sub_ptr, m, 42)             # <<<<<<<<<<<<<<
 *             if i == 0 or i == last_idx:
 *                 found.insert(hx2)
 */
          __pyx_v_hx2 = XXHash64::hash(__pyx_v_sub_ptr, __pyx_v_m, 42);

          /* "dysgu/graph.pyx":85
 *         while i < end:
 *             hx2 = xxhasher(sub_ptr, m, 42)
 *             if i == 0 or i == last_idx:             # <<<<<<<<<<<<<<
 *                 found.insert(hx2)
 *             while window2.size() != 0 and window2.back().first >= hx2:
 */
          __pyx_t_6 = ((__pyx_v_i == 0) != 0);
          if (!__pyx_t_6) {
          } else {
            __pyx_t_5 = __pyx_t_6;
            goto __pyx_L9_bool_binop_done;
          }
          __pyx_t_6 = ((__pyx_v_i == __pyx_v_last_idx) != 0);
          __pyx_t_5 = __pyx_t_6;
          __pyx_L9_bool_binop_done:;
          if (__pyx_t_5) {

            /* "dysgu/graph.pyx":86
 *             hx2 = xxhasher(sub_ptr, m, 42)
 *             if i == 0 or i == last_idx:
 *                 found.insert(hx2)             # <<<<<<<<<<<<<<
 *             while window2.size() != 0 and window2.back().first >= hx2:
 *                 window2.pop_back()
 */
            __pyx_v_found.insert(__pyx_v_hx2);

            /* "dysgu/graph.pyx":85
 *         while i < end:
 *             hx2 = xxhasher(sub_ptr, m, 42)
 *             if i == 0 or i == last_idx:             # <<<<<<<<<<<<<<
 *                 found.insert(hx2)
 *             while window2.size() != 0 and window2.back().first >= hx2:
 */
          }

          /* "dysgu/graph.pyx":87
 *             if i == 0 or i == last_idx:
 *                 found.insert(hx2)
 *             while window2.size() != 0 and window2.back().first >= hx2:             # <<<<<<<<<<<<<<
 *                 window2.pop_back()
 *             window2.push_back(cpp_long_pair(hx2, i))
 */
          while (1) {
            __pyx_t_6 = ((__pyx_v_window2.size() != 0) != 0);
            if (__pyx_t_6) {
            } else {
              __pyx_t_5 = __pyx_t_6;
              goto __pyx_L13_bool_binop_done;
            }
            __pyx_t_6 = ((__pyx_v_window2.back().first >= __pyx_v_hx2) != 0);
            __pyx_t_5 = __pyx_t_6;
            __pyx_L13_bool_binop_done:;
            if (!__pyx_t_5) break;

            /* "dysgu/graph.pyx":88
 *                 found.insert(hx2)
 *             while window2.size() != 0 and window2.back().first >= hx2:
 *                 window2.pop_back()             # <<<<<<<<<<<<<<
 *             window2.push_back(cpp_long_pair(hx2, i))
 *             while window2.front().second <= i - k:
 */
            __pyx_v_window2.pop_back();
          }

          /* "dysgu/graph.pyx":89
 *             while window2.size() != 0 and window2.back().first >= hx2:
 *                 window2.pop_back()
 *             window2.push_back(cpp_long_pair(hx2, i))             # <<<<<<<<<<<<<<
 *             while window2.front().second <= i - k:
 *                 window2.pop_front()
 */
          try {
            __pyx_t_7 = __pyx_t_5dysgu_5graph_cpp_long_pair(__pyx_v_hx2, __pyx_v_i);
          } catch(...) {
            #ifdef WITH_THREAD
            PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
            #endif
            __Pyx_CppExn2PyErr();
            #ifdef WITH_THREAD
            __Pyx_PyGILState_Release(__pyx_gilstate_save);
            #endif
            __PYX_ERR(1, 89, __pyx_L4_error)
          }
          __pyx_v_window2.push_back(__pyx_t_7);

          /* "dysgu/graph.pyx":90
 *                 window2.pop_back()
 *             window2.push_back(cpp_long_pair(hx2, i))
 *             while window2.front().second <= i - k:             # <<<<<<<<<<<<<<
 *                 window2.pop_front()
 *             sub_ptr += 1
 */
          while (1) {
            __pyx_t_5 = ((__pyx_v_window2.front().second <= (__pyx_v_i - __pyx_v_k)) != 0);
            if (!__pyx_t_5) break;

            /* "dysgu/graph.pyx":91
 *             window2.push_back(cpp_long_pair(hx2, i))
 *             while window2.front().second <= i - k:
 *                 window2.pop_front()             # <<<<<<<<<<<<<<
 *             sub_ptr += 1
 *             minimizer_i = window2.front().first
 */
            __pyx_v_window2.pop_front();
          }

          /* "dysgu/graph.pyx":92
 *             while window2.front().second <= i - k:
 *                 window2.pop_front()
 *             sub_ptr += 1             # <<<<<<<<<<<<<<
 *             minimizer_i = window2.front().first
 *             found.insert(minimizer_i)
 */
          __pyx_v_sub_ptr = (__pyx_v_sub_ptr + 1);

          /* "dysgu/graph.pyx":93
 *                 window2.pop_front()
 *             sub_ptr += 1
 *             minimizer_i = window2.front().first             # <<<<<<<<<<<<<<
 *             found.insert(minimizer_i)
 *             i += 1
 */
          __pyx_t_8 = __pyx_v_window2.front().first;
          __pyx_v_minimizer_i = __pyx_t_8;

          /* "dysgu/graph.pyx":94
 *             sub_ptr += 1
 *             minimizer_i = window2.front().first
 *             found.insert(minimizer_i)             # <<<<<<<<<<<<<<
 *             i += 1
 * 
 */
          __pyx_v_found.insert(__pyx_v_minimizer_i);

          /* "dysgu/graph.pyx":95
 *             minimizer_i = window2.front().first
 *             found.insert(minimizer_i)
 *             i += 1             # <<<<<<<<<<<<<<
 * 
 * 
 */
          __pyx_v_i = (__pyx_v_i + 1);
        }
      }

      /* "dysgu/graph.pyx":82
 *     cdef bytes s_bytes = bytes(s.encode("ascii"))
 *     cdef const unsigned char* sub_ptr = s_bytes
 *     with nogil:             # <<<<<<<<<<<<<<
 *         while i < end:
 *             hx2 = xxhasher(sub_ptr, m, 42)
 */
      /*finally:*/ {
        /*normal exit:*/{
          #ifdef WITH_THREAD
          __Pyx_FastGIL_Forget();
          Py_BLOCK_THREADS
          #endif
          goto __pyx_L5;
        }
        __pyx_L4_error: {
          #ifdef WITH_THREAD
          __Pyx_FastGIL_Forget();
          Py_BLOCK_THREADS
          #endif
          goto __pyx_L1_error;
        }
        __pyx_L5:;
      }
  }

  /* "dysgu/graph.pyx":72
 * 
 * 
 * cdef void sliding_window_minimum(int k, int m, str s, unordered_set[long]& found):             # <<<<<<<<<<<<<<
 *     """End minimizer
 *     https://github.com/keegancsmith/Sliding-Window-Minimum/blob/master/sliding_window_minimum.py"""
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_WriteUnraisable("dysgu.graph.sliding_window_minimum", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_s_bytes);
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":98
 * 
 * 
 * cdef str left_soft_clips(str seq, int code_length):             # <<<<<<<<<<<<<<
 *     return seq[0:code_length]
 * 
 */

static PyObject *__pyx_f_5dysgu_5graph_left_soft_clips(PyObject *__pyx_v_seq, int __pyx_v_code_length) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("left_soft_clips", 0);

  /* "dysgu/graph.pyx":99
 * 
 * cdef str left_soft_clips(str seq, int code_length):
 *     return seq[0:code_length]             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  if (unlikely(__pyx_v_seq == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(1, 99, __pyx_L1_error)
  }
  __pyx_t_1 = __Pyx_PyUnicode_Substring(__pyx_v_seq, 0, __pyx_v_code_length); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 99, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":98
 * 
 * 
 * cdef str left_soft_clips(str seq, int code_length):             # <<<<<<<<<<<<<<
 *     return seq[0:code_length]
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.left_soft_clips", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":102
 * 
 * 
 * cdef str right_soft_clips(str seq, int code_length):             # <<<<<<<<<<<<<<
 *     return seq[len(seq) - code_length:]
 * 
 */

static PyObject *__pyx_f_5dysgu_5graph_right_soft_clips(PyObject *__pyx_v_seq, int __pyx_v_code_length) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("right_soft_clips", 0);

  /* "dysgu/graph.pyx":103
 * 
 * cdef str right_soft_clips(str seq, int code_length):
 *     return seq[len(seq) - code_length:]             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  if (unlikely(__pyx_v_seq == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(1, 103, __pyx_L1_error)
  }
  if (unlikely(__pyx_v_seq == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
    __PYX_ERR(1, 103, __pyx_L1_error)
  }
  __pyx_t_1 = __Pyx_PyUnicode_GET_LENGTH(__pyx_v_seq); if (unlikely(__pyx_t_1 == ((Py_ssize_t)-1))) __PYX_ERR(1, 103, __pyx_L1_error)
  __pyx_t_2 = __Pyx_PyUnicode_Substring(__pyx_v_seq, (__pyx_t_1 - __pyx_v_code_length), PY_SSIZE_T_MAX); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 103, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_r = ((PyObject*)__pyx_t_2);
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":102
 * 
 * 
 * cdef str right_soft_clips(str seq, int code_length):             # <<<<<<<<<<<<<<
 *     return seq[len(seq) - code_length:]
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("dysgu.graph.right_soft_clips", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":106
 * 
 * 
 * cdef uint64_t pair_to_int64(uint32_t left, uint32_t right) nogil:             # <<<<<<<<<<<<<<
 *     return <uint64_t> left << 32 | right
 * 
 */

static uint64_t __pyx_f_5dysgu_5graph_pair_to_int64(uint32_t __pyx_v_left, uint32_t __pyx_v_right) {
  uint64_t __pyx_r;

  /* "dysgu/graph.pyx":107
 * 
 * cdef uint64_t pair_to_int64(uint32_t left, uint32_t right) nogil:
 *     return <uint64_t> left << 32 | right             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = ((((uint64_t)__pyx_v_left) << 32) | __pyx_v_right);
  goto __pyx_L0;

  /* "dysgu/graph.pyx":106
 * 
 * 
 * cdef uint64_t pair_to_int64(uint32_t left, uint32_t right) nogil:             # <<<<<<<<<<<<<<
 *     return <uint64_t> left << 32 | right
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "dysgu/graph.pyx":110
 * 
 * 
 * cdef uint32_t int64_left(uint64_t item) nogil:             # <<<<<<<<<<<<<<
 *     cdef uint32_t v = 0
 *     v |= item >> 32
 */

static uint32_t __pyx_f_5dysgu_5graph_int64_left(uint64_t __pyx_v_item) {
  uint32_t __pyx_v_v;
  uint32_t __pyx_r;

  /* "dysgu/graph.pyx":111
 * 
 * cdef uint32_t int64_left(uint64_t item) nogil:
 *     cdef uint32_t v = 0             # <<<<<<<<<<<<<<
 *     v |= item >> 32
 *     return v
 */
  __pyx_v_v = 0;

  /* "dysgu/graph.pyx":112
 * cdef uint32_t int64_left(uint64_t item) nogil:
 *     cdef uint32_t v = 0
 *     v |= item >> 32             # <<<<<<<<<<<<<<
 *     return v
 * 
 */
  __pyx_v_v = (__pyx_v_v | (__pyx_v_item >> 32));

  /* "dysgu/graph.pyx":113
 *     cdef uint32_t v = 0
 *     v |= item >> 32
 *     return v             # <<<<<<<<<<<<<<
 * 
 * cdef uint32_t int64_right(uint64_t item) nogil:
 */
  __pyx_r = __pyx_v_v;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":110
 * 
 * 
 * cdef uint32_t int64_left(uint64_t item) nogil:             # <<<<<<<<<<<<<<
 *     cdef uint32_t v = 0
 *     v |= item >> 32
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "dysgu/graph.pyx":115
 *     return v
 * 
 * cdef uint32_t int64_right(uint64_t item) nogil:             # <<<<<<<<<<<<<<
 *     return <uint32_t> item
 * 
 */

static uint32_t __pyx_f_5dysgu_5graph_int64_right(uint64_t __pyx_v_item) {
  uint32_t __pyx_r;

  /* "dysgu/graph.pyx":116
 * 
 * cdef uint32_t int64_right(uint64_t item) nogil:
 *     return <uint32_t> item             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = ((uint32_t)__pyx_v_item);
  goto __pyx_L0;

  /* "dysgu/graph.pyx":115
 *     return v
 * 
 * cdef uint32_t int64_right(uint64_t item) nogil:             # <<<<<<<<<<<<<<
 *     return <uint32_t> item
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "dysgu/graph.pyx":137
 * 
 *     """Keeps track of which reads are in scope"""
 *     def __init__(self, int max_dist, int k, int m, int clip_length, int minimizer_support_thresh,             # <<<<<<<<<<<<<<
 *                  int minimizer_breadth, int read_length):
 *         self.max_dist = max_dist
 */

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_10ClipScoper_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_pw_5dysgu_5graph_10ClipScoper_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  int __pyx_v_max_dist;
  int __pyx_v_k;
  int __pyx_v_m;
  int __pyx_v_clip_length;
  int __pyx_v_minimizer_support_thresh;
  int __pyx_v_minimizer_breadth;
  int __pyx_v_read_length;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_max_dist,&__pyx_n_s_k,&__pyx_n_s_m,&__pyx_n_s_clip_length,&__pyx_n_s_minimizer_support_thresh,&__pyx_n_s_minimizer_breadth,&__pyx_n_s_read_length,0};
    PyObject* values[7] = {0,0,0,0,0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        CYTHON_FALLTHROUGH;
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_max_dist)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_k)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 1); __PYX_ERR(1, 137, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_m)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 2); __PYX_ERR(1, 137, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  3:
        if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_clip_length)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 3); __PYX_ERR(1, 137, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  4:
        if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_minimizer_support_thresh)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 4); __PYX_ERR(1, 137, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  5:
        if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_minimizer_breadth)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 5); __PYX_ERR(1, 137, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  6:
        if (likely((values[6] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_read_length)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 6); __PYX_ERR(1, 137, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(1, 137, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 7) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
      values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
      values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
      values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
      values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
    }
    __pyx_v_max_dist = __Pyx_PyInt_As_int(values[0]); if (unlikely((__pyx_v_max_dist == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 137, __pyx_L3_error)
    __pyx_v_k = __Pyx_PyInt_As_int(values[1]); if (unlikely((__pyx_v_k == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 137, __pyx_L3_error)
    __pyx_v_m = __Pyx_PyInt_As_int(values[2]); if (unlikely((__pyx_v_m == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 137, __pyx_L3_error)
    __pyx_v_clip_length = __Pyx_PyInt_As_int(values[3]); if (unlikely((__pyx_v_clip_length == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 137, __pyx_L3_error)
    __pyx_v_minimizer_support_thresh = __Pyx_PyInt_As_int(values[4]); if (unlikely((__pyx_v_minimizer_support_thresh == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 137, __pyx_L3_error)
    __pyx_v_minimizer_breadth = __Pyx_PyInt_As_int(values[5]); if (unlikely((__pyx_v_minimizer_breadth == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 138, __pyx_L3_error)
    __pyx_v_read_length = __Pyx_PyInt_As_int(values[6]); if (unlikely((__pyx_v_read_length == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 138, __pyx_L3_error)
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 137, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.ClipScoper.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_10ClipScoper___init__(((struct __pyx_obj_5dysgu_5graph_ClipScoper *)__pyx_v_self), __pyx_v_max_dist, __pyx_v_k, __pyx_v_m, __pyx_v_clip_length, __pyx_v_minimizer_support_thresh, __pyx_v_minimizer_breadth, __pyx_v_read_length);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_10ClipScoper___init__(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, int __pyx_v_max_dist, int __pyx_v_k, int __pyx_v_m, int __pyx_v_clip_length, int __pyx_v_minimizer_support_thresh, int __pyx_v_minimizer_breadth, int __pyx_v_read_length) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  long __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__init__", 0);

  /* "dysgu/graph.pyx":139
 *     def __init__(self, int max_dist, int k, int m, int clip_length, int minimizer_support_thresh,
 *                  int minimizer_breadth, int read_length):
 *         self.max_dist = max_dist             # <<<<<<<<<<<<<<
 *         self.k = k
 *         self.w = m
 */
  __pyx_v_self->max_dist = __pyx_v_max_dist;

  /* "dysgu/graph.pyx":140
 *                  int minimizer_breadth, int read_length):
 *         self.max_dist = max_dist
 *         self.k = k             # <<<<<<<<<<<<<<
 *         self.w = m
 *         self.clip_length = clip_length
 */
  __pyx_v_self->k = __pyx_v_k;

  /* "dysgu/graph.pyx":141
 *         self.max_dist = max_dist
 *         self.k = k
 *         self.w = m             # <<<<<<<<<<<<<<
 *         self.clip_length = clip_length
 * 
 */
  __pyx_v_self->w = __pyx_v_m;

  /* "dysgu/graph.pyx":142
 *         self.k = k
 *         self.w = m
 *         self.clip_length = clip_length             # <<<<<<<<<<<<<<
 * 
 *         cdef long hx2
 */
  __pyx_v_self->clip_length = __pyx_v_clip_length;

  /* "dysgu/graph.pyx":148
 *         cdef const unsigned char* sub_ptr
 * 
 *         self.current_chrom = 0             # <<<<<<<<<<<<<<
 *         self.minimizer_support_thresh = minimizer_support_thresh
 *         self.minimizer_matches = minimizer_breadth
 */
  __pyx_v_self->current_chrom = 0;

  /* "dysgu/graph.pyx":149
 * 
 *         self.current_chrom = 0
 *         self.minimizer_support_thresh = minimizer_support_thresh             # <<<<<<<<<<<<<<
 *         self.minimizer_matches = minimizer_breadth
 * 
 */
  __pyx_v_self->minimizer_support_thresh = __pyx_v_minimizer_support_thresh;

  /* "dysgu/graph.pyx":150
 *         self.current_chrom = 0
 *         self.minimizer_support_thresh = minimizer_support_thresh
 *         self.minimizer_matches = minimizer_breadth             # <<<<<<<<<<<<<<
 * 
 *         self.n_local_minimizers_left = 0
 */
  __pyx_v_self->minimizer_matches = __pyx_v_minimizer_breadth;

  /* "dysgu/graph.pyx":152
 *         self.minimizer_matches = minimizer_breadth
 * 
 *         self.n_local_minimizers_left = 0             # <<<<<<<<<<<<<<
 *         self.n_local_minimizers_right = 0
 * 
 */
  __pyx_v_self->n_local_minimizers_left = 0;

  /* "dysgu/graph.pyx":153
 * 
 *         self.n_local_minimizers_left = 0
 *         self.n_local_minimizers_right = 0             # <<<<<<<<<<<<<<
 * 
 *         self.target_density = 2. / (m + 1)
 */
  __pyx_v_self->n_local_minimizers_right = 0;

  /* "dysgu/graph.pyx":155
 *         self.n_local_minimizers_right = 0
 * 
 *         self.target_density = 2. / (m + 1)             # <<<<<<<<<<<<<<
 *         self.upper_bound_n_minimizers = read_length * self.target_density
 * 
 */
  __pyx_t_1 = (__pyx_v_m + 1);
  if (unlikely(__pyx_t_1 == 0)) {
    PyErr_SetString(PyExc_ZeroDivisionError, "float division");
    __PYX_ERR(1, 155, __pyx_L1_error)
  }
  __pyx_v_self->target_density = (2. / ((double)__pyx_t_1));

  /* "dysgu/graph.pyx":156
 * 
 *         self.target_density = 2. / (m + 1)
 *         self.upper_bound_n_minimizers = read_length * self.target_density             # <<<<<<<<<<<<<<
 * 
 *         self.rds_clip = [deque([]), deque([])]
 */
  __pyx_v_self->upper_bound_n_minimizers = (__pyx_v_read_length * __pyx_v_self->target_density);

  /* "dysgu/graph.pyx":158
 *         self.upper_bound_n_minimizers = read_length * self.target_density
 * 
 *         self.rds_clip = [deque([]), deque([])]             # <<<<<<<<<<<<<<
 * 
 *         self.minimizer_mode = False
 */
  __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_deque); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 158, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = PyList_New(0); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 158, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_3))) {
    __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_3);
    if (likely(__pyx_t_5)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
      __Pyx_INCREF(__pyx_t_5);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_3, function);
    }
  }
  __pyx_t_2 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_3, __pyx_t_5, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 158, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_deque); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 158, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = PyList_New(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 158, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_4))) {
    __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_4);
    if (likely(__pyx_t_6)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_4, function);
    }
  }
  __pyx_t_3 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_4, __pyx_t_6, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 158, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_4 = PyList_New(2); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 158, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_GIVEREF(__pyx_t_2);
  PyList_SET_ITEM(__pyx_t_4, 0, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_3);
  PyList_SET_ITEM(__pyx_t_4, 1, __pyx_t_3);
  __pyx_t_2 = 0;
  __pyx_t_3 = 0;
  __Pyx_GIVEREF(__pyx_t_4);
  __Pyx_GOTREF(__pyx_v_self->rds_clip);
  __Pyx_DECREF(__pyx_v_self->rds_clip);
  __pyx_v_self->rds_clip = __pyx_t_4;
  __pyx_t_4 = 0;

  /* "dysgu/graph.pyx":160
 *         self.rds_clip = [deque([]), deque([])]
 * 
 *         self.minimizer_mode = False             # <<<<<<<<<<<<<<
 * 
 *     cdef void _add_m_find_candidates(self, clip_seq, int name, int idx, int position,
 */
  __pyx_v_self->minimizer_mode = 0;

  /* "dysgu/graph.pyx":137
 * 
 *     """Keeps track of which reads are in scope"""
 *     def __init__(self, int max_dist, int k, int m, int clip_length, int minimizer_support_thresh,             # <<<<<<<<<<<<<<
 *                  int minimizer_breadth, int read_length):
 *         self.max_dist = max_dist
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("dysgu.graph.ClipScoper.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":162
 *         self.minimizer_mode = False
 * 
 *     cdef void _add_m_find_candidates(self, clip_seq, int name, int idx, int position,             # <<<<<<<<<<<<<<
 *                                      robin_map[uint64_t, unordered_set[uint64_t]]& clip_table,
 *                                      unordered_set[int]& clustered_nodes):
 */

static void __pyx_f_5dysgu_5graph_10ClipScoper__add_m_find_candidates(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, PyObject *__pyx_v_clip_seq, int __pyx_v_name, int __pyx_v_idx, int __pyx_v_position, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &__pyx_v_clip_table, robin_hood::unordered_set<int>  &__pyx_v_clustered_nodes) {
  robin_hood::unordered_set<long>  __pyx_v_clip_minimizers;
  robin_hood::unordered_set<uint64_t> ::iterator __pyx_v_targets_iter;
  robin_hood::unordered_set<uint64_t> ::iterator __pyx_v_targets_end;
  PyObject *__pyx_v_target_counts = NULL;
  int __pyx_v_total_m_found;
  int __pyx_v_find_candidate;
  long __pyx_v_m;
  long __pyx_v_set_item;
  int __pyx_v_n_local_minimizers;
  int __pyx_v_n_local_reads;
  float __pyx_v_upper_bound;
  int __pyx_v_mitem;
  int __pyx_v_item_position;
  PyObject *__pyx_v_support = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  int __pyx_t_5;
  size_t __pyx_t_6;
  robin_hood::unordered_set<long> ::iterator __pyx_t_7;
  long __pyx_t_8;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("_add_m_find_candidates", 0);

  /* "dysgu/graph.pyx":170
 * 
 *         # get minimizers of sequence
 *         sliding_window_minimum(self.k, self.w, clip_seq, clip_minimizers)             # <<<<<<<<<<<<<<
 *         if clip_minimizers.empty():
 *             return
 */
  if (!(likely(PyUnicode_CheckExact(__pyx_v_clip_seq))||((__pyx_v_clip_seq) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "unicode", Py_TYPE(__pyx_v_clip_seq)->tp_name), 0))) __PYX_ERR(1, 170, __pyx_L1_error)
  __pyx_f_5dysgu_5graph_sliding_window_minimum(__pyx_v_self->k, __pyx_v_self->w, ((PyObject*)__pyx_v_clip_seq), __pyx_v_clip_minimizers);

  /* "dysgu/graph.pyx":171
 *         # get minimizers of sequence
 *         sliding_window_minimum(self.k, self.w, clip_seq, clip_minimizers)
 *         if clip_minimizers.empty():             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  __pyx_t_1 = (__pyx_v_clip_minimizers.empty() != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":172
 *         sliding_window_minimum(self.k, self.w, clip_seq, clip_minimizers)
 *         if clip_minimizers.empty():
 *             return             # <<<<<<<<<<<<<<
 * 
 *         # add read minimizers from read, and find partners
 */
    goto __pyx_L0;

    /* "dysgu/graph.pyx":171
 *         # get minimizers of sequence
 *         sliding_window_minimum(self.k, self.w, clip_seq, clip_minimizers)
 *         if clip_minimizers.empty():             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  }

  /* "dysgu/graph.pyx":176
 *         # add read minimizers from read, and find partners
 *         # idx 0 is for left clips, 1 is for right clips
 *         target_counts = defaultdict(int)             # <<<<<<<<<<<<<<
 * 
 *         cdef int total_m_found = 0
 */
  __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_defaultdict); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 176, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_3))) {
    __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_3);
    if (likely(__pyx_t_4)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
      __Pyx_INCREF(__pyx_t_4);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_3, function);
    }
  }
  __pyx_t_2 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_3, __pyx_t_4, ((PyObject *)(&PyInt_Type))) : __Pyx_PyObject_CallOneArg(__pyx_t_3, ((PyObject *)(&PyInt_Type)));
  __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 176, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_target_counts = __pyx_t_2;
  __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":178
 *         target_counts = defaultdict(int)
 * 
 *         cdef int total_m_found = 0             # <<<<<<<<<<<<<<
 *         cdef int find_candidate = 1
 *         cdef long m
 */
  __pyx_v_total_m_found = 0;

  /* "dysgu/graph.pyx":179
 * 
 *         cdef int total_m_found = 0
 *         cdef int find_candidate = 1             # <<<<<<<<<<<<<<
 *         cdef long m
 *         cdef long set_item
 */
  __pyx_v_find_candidate = 1;

  /* "dysgu/graph.pyx":185
 *         cdef float upper_bound
 * 
 *         if idx == 0:             # <<<<<<<<<<<<<<
 *             n_local_minimizers = self.n_local_minimizers_left
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_idx == 0) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":186
 * 
 *         if idx == 0:
 *             n_local_minimizers = self.n_local_minimizers_left             # <<<<<<<<<<<<<<
 *         else:
 *             n_local_minimizers = self.n_local_minimizers_right
 */
    __pyx_t_5 = __pyx_v_self->n_local_minimizers_left;
    __pyx_v_n_local_minimizers = __pyx_t_5;

    /* "dysgu/graph.pyx":185
 *         cdef float upper_bound
 * 
 *         if idx == 0:             # <<<<<<<<<<<<<<
 *             n_local_minimizers = self.n_local_minimizers_left
 *         else:
 */
    goto __pyx_L4;
  }

  /* "dysgu/graph.pyx":188
 *             n_local_minimizers = self.n_local_minimizers_left
 *         else:
 *             n_local_minimizers = self.n_local_minimizers_right             # <<<<<<<<<<<<<<
 * 
 *         n_local_reads = self.scope_left.size() if idx == 0 else self.scope_right.size()
 */
  /*else*/ {
    __pyx_t_5 = __pyx_v_self->n_local_minimizers_right;
    __pyx_v_n_local_minimizers = __pyx_t_5;
  }
  __pyx_L4:;

  /* "dysgu/graph.pyx":190
 *             n_local_minimizers = self.n_local_minimizers_right
 * 
 *         n_local_reads = self.scope_left.size() if idx == 0 else self.scope_right.size()             # <<<<<<<<<<<<<<
 *         upper_bound = (1 + (n_local_reads * 0.15)) * self.upper_bound_n_minimizers
 * 
 */
  if (((__pyx_v_idx == 0) != 0)) {
    __pyx_t_6 = __pyx_v_self->scope_left.size();
  } else {
    __pyx_t_6 = __pyx_v_self->scope_right.size();
  }
  __pyx_v_n_local_reads = __pyx_t_6;

  /* "dysgu/graph.pyx":191
 * 
 *         n_local_reads = self.scope_left.size() if idx == 0 else self.scope_right.size()
 *         upper_bound = (1 + (n_local_reads * 0.15)) * self.upper_bound_n_minimizers             # <<<<<<<<<<<<<<
 * 
 *         if n_local_minimizers > upper_bound:
 */
  __pyx_v_upper_bound = ((1.0 + (__pyx_v_n_local_reads * 0.15)) * __pyx_v_self->upper_bound_n_minimizers);

  /* "dysgu/graph.pyx":193
 *         upper_bound = (1 + (n_local_reads * 0.15)) * self.upper_bound_n_minimizers
 * 
 *         if n_local_minimizers > upper_bound:             # <<<<<<<<<<<<<<
 *             find_candidate = 0
 * 
 */
  __pyx_t_1 = ((__pyx_v_n_local_minimizers > __pyx_v_upper_bound) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":194
 * 
 *         if n_local_minimizers > upper_bound:
 *             find_candidate = 0             # <<<<<<<<<<<<<<
 * 
 *         cdef cpp_pair[long, int] minimizer_pos_pair
 */
    __pyx_v_find_candidate = 0;

    /* "dysgu/graph.pyx":193
 *         upper_bound = (1 + (n_local_reads * 0.15)) * self.upper_bound_n_minimizers
 * 
 *         if n_local_minimizers > upper_bound:             # <<<<<<<<<<<<<<
 *             find_candidate = 0
 * 
 */
  }

  /* "dysgu/graph.pyx":199
 *         cdef int mitem, item_position
 * 
 *         for m in clip_minimizers:             # <<<<<<<<<<<<<<
 * 
 *             if idx == 0:
 */
  __pyx_t_7 = __pyx_v_clip_minimizers.begin();
  for (;;) {
    if (!(__pyx_t_7 != __pyx_v_clip_minimizers.end())) break;
    __pyx_t_8 = *__pyx_t_7;
    ++__pyx_t_7;
    __pyx_v_m = __pyx_t_8;

    /* "dysgu/graph.pyx":201
 *         for m in clip_minimizers:
 * 
 *             if idx == 0:             # <<<<<<<<<<<<<<
 *                 self.read_minimizers_left.insert(name, m)
 *             else:
 */
    __pyx_t_1 = ((__pyx_v_idx == 0) != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":202
 * 
 *             if idx == 0:
 *                 self.read_minimizers_left.insert(name, m)             # <<<<<<<<<<<<<<
 *             else:
 *                 self.read_minimizers_right.insert(name, m)
 */
      __pyx_v_self->read_minimizers_left.insert(__pyx_v_name, __pyx_v_m);

      /* "dysgu/graph.pyx":201
 *         for m in clip_minimizers:
 * 
 *             if idx == 0:             # <<<<<<<<<<<<<<
 *                 self.read_minimizers_left.insert(name, m)
 *             else:
 */
      goto __pyx_L8;
    }

    /* "dysgu/graph.pyx":204
 *                 self.read_minimizers_left.insert(name, m)
 *             else:
 *                 self.read_minimizers_right.insert(name, m)             # <<<<<<<<<<<<<<
 * 
 *             if clip_table.find(m) == clip_table.end():
 */
    /*else*/ {
      __pyx_v_self->read_minimizers_right.insert(__pyx_v_name, __pyx_v_m);
    }
    __pyx_L8:;

    /* "dysgu/graph.pyx":206
 *                 self.read_minimizers_right.insert(name, m)
 * 
 *             if clip_table.find(m) == clip_table.end():             # <<<<<<<<<<<<<<
 *                 clip_table[m].insert(pair_to_int64(position, name))
 * 
 */
    __pyx_t_1 = ((__pyx_v_clip_table.find(__pyx_v_m) == __pyx_v_clip_table.end()) != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":207
 * 
 *             if clip_table.find(m) == clip_table.end():
 *                 clip_table[m].insert(pair_to_int64(position, name))             # <<<<<<<<<<<<<<
 * 
 *                 if idx == 0:
 */
      (__pyx_v_clip_table[__pyx_v_m]).insert(__pyx_f_5dysgu_5graph_pair_to_int64(__pyx_v_position, __pyx_v_name));

      /* "dysgu/graph.pyx":209
 *                 clip_table[m].insert(pair_to_int64(position, name))
 * 
 *                 if idx == 0:             # <<<<<<<<<<<<<<
 *                     self.n_local_minimizers_left += 1
 *                 else:
 */
      __pyx_t_1 = ((__pyx_v_idx == 0) != 0);
      if (__pyx_t_1) {

        /* "dysgu/graph.pyx":210
 * 
 *                 if idx == 0:
 *                     self.n_local_minimizers_left += 1             # <<<<<<<<<<<<<<
 *                 else:
 *                     self.n_local_minimizers_right += 1
 */
        __pyx_v_self->n_local_minimizers_left = (__pyx_v_self->n_local_minimizers_left + 1);

        /* "dysgu/graph.pyx":209
 *                 clip_table[m].insert(pair_to_int64(position, name))
 * 
 *                 if idx == 0:             # <<<<<<<<<<<<<<
 *                     self.n_local_minimizers_left += 1
 *                 else:
 */
        goto __pyx_L10;
      }

      /* "dysgu/graph.pyx":212
 *                     self.n_local_minimizers_left += 1
 *                 else:
 *                     self.n_local_minimizers_right += 1             # <<<<<<<<<<<<<<
 *                 continue
 * 
 */
      /*else*/ {
        __pyx_v_self->n_local_minimizers_right = (__pyx_v_self->n_local_minimizers_right + 1);
      }
      __pyx_L10:;

      /* "dysgu/graph.pyx":213
 *                 else:
 *                     self.n_local_minimizers_right += 1
 *                 continue             # <<<<<<<<<<<<<<
 * 
 *             elif find_candidate:  # Look for suitable partners
 */
      goto __pyx_L6_continue;

      /* "dysgu/graph.pyx":206
 *                 self.read_minimizers_right.insert(name, m)
 * 
 *             if clip_table.find(m) == clip_table.end():             # <<<<<<<<<<<<<<
 *                 clip_table[m].insert(pair_to_int64(position, name))
 * 
 */
    }

    /* "dysgu/graph.pyx":215
 *                 continue
 * 
 *             elif find_candidate:  # Look for suitable partners             # <<<<<<<<<<<<<<
 * 
 *                 targets_iter = clip_table[m].begin()
 */
    __pyx_t_1 = (__pyx_v_find_candidate != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":217
 *             elif find_candidate:  # Look for suitable partners
 * 
 *                 targets_iter = clip_table[m].begin()             # <<<<<<<<<<<<<<
 *                 targets_end = clip_table[m].end()
 *                 while targets_iter != targets_end:
 */
      __pyx_v_targets_iter = (__pyx_v_clip_table[__pyx_v_m]).begin();

      /* "dysgu/graph.pyx":218
 * 
 *                 targets_iter = clip_table[m].begin()
 *                 targets_end = clip_table[m].end()             # <<<<<<<<<<<<<<
 *                 while targets_iter != targets_end:
 *                     set_item = dereference(targets_iter)
 */
      __pyx_v_targets_end = (__pyx_v_clip_table[__pyx_v_m]).end();

      /* "dysgu/graph.pyx":219
 *                 targets_iter = clip_table[m].begin()
 *                 targets_end = clip_table[m].end()
 *                 while targets_iter != targets_end:             # <<<<<<<<<<<<<<
 *                     set_item = dereference(targets_iter)
 *                     item_position = int64_left(set_item)
 */
      while (1) {
        __pyx_t_1 = ((__pyx_v_targets_iter != __pyx_v_targets_end) != 0);
        if (!__pyx_t_1) break;

        /* "dysgu/graph.pyx":220
 *                 targets_end = clip_table[m].end()
 *                 while targets_iter != targets_end:
 *                     set_item = dereference(targets_iter)             # <<<<<<<<<<<<<<
 *                     item_position = int64_left(set_item)
 * 
 */
        __pyx_v_set_item = (*__pyx_v_targets_iter);

        /* "dysgu/graph.pyx":221
 *                 while targets_iter != targets_end:
 *                     set_item = dereference(targets_iter)
 *                     item_position = int64_left(set_item)             # <<<<<<<<<<<<<<
 * 
 *                     if abs(item_position - position) < 7:
 */
        __pyx_v_item_position = __pyx_f_5dysgu_5graph_int64_left(__pyx_v_set_item);

        /* "dysgu/graph.pyx":223
 *                     item_position = int64_left(set_item)
 * 
 *                     if abs(item_position - position) < 7:             # <<<<<<<<<<<<<<
 *                         mitem = int64_right(set_item)
 *                         total_m_found += 1
 */
        __pyx_t_5 = abs((__pyx_v_item_position - __pyx_v_position)); if (unlikely(__pyx_t_5 == ((int)-1))) __PYX_ERR(1, 223, __pyx_L1_error)
        __pyx_t_1 = ((__pyx_t_5 < 7) != 0);
        if (__pyx_t_1) {

          /* "dysgu/graph.pyx":224
 * 
 *                     if abs(item_position - position) < 7:
 *                         mitem = int64_right(set_item)             # <<<<<<<<<<<<<<
 *                         total_m_found += 1
 *                         target_counts[mitem] += 1
 */
          __pyx_v_mitem = __pyx_f_5dysgu_5graph_int64_right(__pyx_v_set_item);

          /* "dysgu/graph.pyx":225
 *                     if abs(item_position - position) < 7:
 *                         mitem = int64_right(set_item)
 *                         total_m_found += 1             # <<<<<<<<<<<<<<
 *                         target_counts[mitem] += 1
 *                         support = (total_m_found / 2) + target_counts[mitem]
 */
          __pyx_v_total_m_found = (__pyx_v_total_m_found + 1);

          /* "dysgu/graph.pyx":226
 *                         mitem = int64_right(set_item)
 *                         total_m_found += 1
 *                         target_counts[mitem] += 1             # <<<<<<<<<<<<<<
 *                         support = (total_m_found / 2) + target_counts[mitem]
 * 
 */
          __pyx_t_5 = __pyx_v_mitem;
          __pyx_t_2 = __Pyx_GetItemInt(__pyx_v_target_counts, __pyx_t_5, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 226, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_2);
          __pyx_t_3 = __Pyx_PyInt_AddObjC(__pyx_t_2, __pyx_int_1, 1, 1, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 226, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
          if (unlikely(__Pyx_SetItemInt(__pyx_v_target_counts, __pyx_t_5, __pyx_t_3, int, 1, __Pyx_PyInt_From_int, 0, 1, 0) < 0)) __PYX_ERR(1, 226, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

          /* "dysgu/graph.pyx":227
 *                         total_m_found += 1
 *                         target_counts[mitem] += 1
 *                         support = (total_m_found / 2) + target_counts[mitem]             # <<<<<<<<<<<<<<
 * 
 *                         if support >= self.minimizer_support_thresh:
 */
          __pyx_t_3 = PyFloat_FromDouble((((double)__pyx_v_total_m_found) / 2.0)); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 227, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          __pyx_t_2 = __Pyx_GetItemInt(__pyx_v_target_counts, __pyx_v_mitem, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 227, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_2);
          __pyx_t_4 = PyNumber_Add(__pyx_t_3, __pyx_t_2); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 227, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_4);
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
          __Pyx_XDECREF_SET(__pyx_v_support, __pyx_t_4);
          __pyx_t_4 = 0;

          /* "dysgu/graph.pyx":229
 *                         support = (total_m_found / 2) + target_counts[mitem]
 * 
 *                         if support >= self.minimizer_support_thresh:             # <<<<<<<<<<<<<<
 *                             clustered_nodes.insert(mitem)
 *                         # Maximum edges for each read
 */
          __pyx_t_4 = __Pyx_PyInt_From_int(__pyx_v_self->minimizer_support_thresh); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 229, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_4);
          __pyx_t_2 = PyObject_RichCompare(__pyx_v_support, __pyx_t_4, Py_GE); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 229, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
          __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(1, 229, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":230
 * 
 *                         if support >= self.minimizer_support_thresh:
 *                             clustered_nodes.insert(mitem)             # <<<<<<<<<<<<<<
 *                         # Maximum edges for each read
 *                         if clustered_nodes.size() >= 5:
 */
            __pyx_v_clustered_nodes.insert(__pyx_v_mitem);

            /* "dysgu/graph.pyx":229
 *                         support = (total_m_found / 2) + target_counts[mitem]
 * 
 *                         if support >= self.minimizer_support_thresh:             # <<<<<<<<<<<<<<
 *                             clustered_nodes.insert(mitem)
 *                         # Maximum edges for each read
 */
          }

          /* "dysgu/graph.pyx":232
 *                             clustered_nodes.insert(mitem)
 *                         # Maximum edges for each read
 *                         if clustered_nodes.size() >= 5:             # <<<<<<<<<<<<<<
 *                             find_candidate = 0
 *                             break
 */
          __pyx_t_1 = ((__pyx_v_clustered_nodes.size() >= 5) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":233
 *                         # Maximum edges for each read
 *                         if clustered_nodes.size() >= 5:
 *                             find_candidate = 0             # <<<<<<<<<<<<<<
 *                             break
 * 
 */
            __pyx_v_find_candidate = 0;

            /* "dysgu/graph.pyx":234
 *                         if clustered_nodes.size() >= 5:
 *                             find_candidate = 0
 *                             break             # <<<<<<<<<<<<<<
 * 
 *                     preincrement(targets_iter)
 */
            goto __pyx_L12_break;

            /* "dysgu/graph.pyx":232
 *                             clustered_nodes.insert(mitem)
 *                         # Maximum edges for each read
 *                         if clustered_nodes.size() >= 5:             # <<<<<<<<<<<<<<
 *                             find_candidate = 0
 *                             break
 */
          }

          /* "dysgu/graph.pyx":223
 *                     item_position = int64_left(set_item)
 * 
 *                     if abs(item_position - position) < 7:             # <<<<<<<<<<<<<<
 *                         mitem = int64_right(set_item)
 *                         total_m_found += 1
 */
        }

        /* "dysgu/graph.pyx":236
 *                             break
 * 
 *                     preincrement(targets_iter)             # <<<<<<<<<<<<<<
 * 
 *             clip_table[m].insert(pair_to_int64(position, name))
 */
        (void)((++__pyx_v_targets_iter));
      }
      __pyx_L12_break:;

      /* "dysgu/graph.pyx":215
 *                 continue
 * 
 *             elif find_candidate:  # Look for suitable partners             # <<<<<<<<<<<<<<
 * 
 *                 targets_iter = clip_table[m].begin()
 */
    }

    /* "dysgu/graph.pyx":238
 *                     preincrement(targets_iter)
 * 
 *             clip_table[m].insert(pair_to_int64(position, name))             # <<<<<<<<<<<<<<
 * 
 *     cdef void _refresh_scope(self, cpp_deque[cpp_pair[int, int]]& scope, int position, MinimizerTable& mm_table,
 */
    (__pyx_v_clip_table[__pyx_v_m]).insert(__pyx_f_5dysgu_5graph_pair_to_int64(__pyx_v_position, __pyx_v_name));

    /* "dysgu/graph.pyx":199
 *         cdef int mitem, item_position
 * 
 *         for m in clip_minimizers:             # <<<<<<<<<<<<<<
 * 
 *             if idx == 0:
 */
    __pyx_L6_continue:;
  }

  /* "dysgu/graph.pyx":162
 *         self.minimizer_mode = False
 * 
 *     cdef void _add_m_find_candidates(self, clip_seq, int name, int idx, int position,             # <<<<<<<<<<<<<<
 *                                      robin_map[uint64_t, unordered_set[uint64_t]]& clip_table,
 *                                      unordered_set[int]& clustered_nodes):
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_WriteUnraisable("dysgu.graph.ClipScoper._add_m_find_candidates", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_target_counts);
  __Pyx_XDECREF(__pyx_v_support);
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":240
 *             clip_table[m].insert(pair_to_int64(position, name))
 * 
 *     cdef void _refresh_scope(self, cpp_deque[cpp_pair[int, int]]& scope, int position, MinimizerTable& mm_table,             # <<<<<<<<<<<<<<
 *                              robin_map[uint64_t, unordered_set[uint64_t]]& clip_table, int index
 *                              ):
 */

static void __pyx_f_5dysgu_5graph_10ClipScoper__refresh_scope(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, std::deque<std::pair<int,int> >  &__pyx_v_scope, int __pyx_v_position, MinimizerTable &__pyx_v_mm_table, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &__pyx_v_clip_table, int __pyx_v_index) {
  int __pyx_v_item_position;
  int __pyx_v_name;
  long __pyx_v_m;
  robin_hood::unordered_set<long> ::iterator __pyx_v_set_iter;
  robin_hood::unordered_set<long> ::iterator __pyx_v_set_iter_end;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("_refresh_scope", 0);

  /* "dysgu/graph.pyx":250
 *         cdef unordered_set[long].iterator set_iter_end
 * 
 *         while True:             # <<<<<<<<<<<<<<
 *             if scope.empty():
 *                 break
 */
  while (1) {

    /* "dysgu/graph.pyx":251
 * 
 *         while True:
 *             if scope.empty():             # <<<<<<<<<<<<<<
 *                 break
 *             if abs(scope[0].first - position) > self.max_dist:
 */
    __pyx_t_1 = (__pyx_v_scope.empty() != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":252
 *         while True:
 *             if scope.empty():
 *                 break             # <<<<<<<<<<<<<<
 *             if abs(scope[0].first - position) > self.max_dist:
 * 
 */
      goto __pyx_L4_break;

      /* "dysgu/graph.pyx":251
 * 
 *         while True:
 *             if scope.empty():             # <<<<<<<<<<<<<<
 *                 break
 *             if abs(scope[0].first - position) > self.max_dist:
 */
    }

    /* "dysgu/graph.pyx":253
 *             if scope.empty():
 *                 break
 *             if abs(scope[0].first - position) > self.max_dist:             # <<<<<<<<<<<<<<
 * 
 *                 item_position = scope[0].first
 */
    __pyx_t_2 = abs(((__pyx_v_scope[0]).first - __pyx_v_position)); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(1, 253, __pyx_L1_error)
    __pyx_t_1 = ((__pyx_t_2 > __pyx_v_self->max_dist) != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":255
 *             if abs(scope[0].first - position) > self.max_dist:
 * 
 *                 item_position = scope[0].first             # <<<<<<<<<<<<<<
 *                 name = scope[0].second
 *                 scope.pop_front()
 */
      __pyx_t_2 = (__pyx_v_scope[0]).first;
      __pyx_v_item_position = __pyx_t_2;

      /* "dysgu/graph.pyx":256
 * 
 *                 item_position = scope[0].first
 *                 name = scope[0].second             # <<<<<<<<<<<<<<
 *                 scope.pop_front()
 * 
 */
      __pyx_t_2 = (__pyx_v_scope[0]).second;
      __pyx_v_name = __pyx_t_2;

      /* "dysgu/graph.pyx":257
 *                 item_position = scope[0].first
 *                 name = scope[0].second
 *                 scope.pop_front()             # <<<<<<<<<<<<<<
 * 
 *                 if mm_table.has_key(name):
 */
      __pyx_v_scope.pop_front();

      /* "dysgu/graph.pyx":259
 *                 scope.pop_front()
 * 
 *                 if mm_table.has_key(name):             # <<<<<<<<<<<<<<
 *                     set_iter = mm_table.get_iterator_begin()
 *                     set_iter_end = mm_table.get_iterator_end()
 */
      __pyx_t_1 = (__pyx_v_mm_table.has_key(__pyx_v_name) != 0);
      if (__pyx_t_1) {

        /* "dysgu/graph.pyx":260
 * 
 *                 if mm_table.has_key(name):
 *                     set_iter = mm_table.get_iterator_begin()             # <<<<<<<<<<<<<<
 *                     set_iter_end = mm_table.get_iterator_end()
 *                     while set_iter != set_iter_end:
 */
        __pyx_v_set_iter = __pyx_v_mm_table.get_iterator_begin();

        /* "dysgu/graph.pyx":261
 *                 if mm_table.has_key(name):
 *                     set_iter = mm_table.get_iterator_begin()
 *                     set_iter_end = mm_table.get_iterator_end()             # <<<<<<<<<<<<<<
 *                     while set_iter != set_iter_end:
 *                         m = dereference(set_iter)
 */
        __pyx_v_set_iter_end = __pyx_v_mm_table.get_iterator_end();

        /* "dysgu/graph.pyx":262
 *                     set_iter = mm_table.get_iterator_begin()
 *                     set_iter_end = mm_table.get_iterator_end()
 *                     while set_iter != set_iter_end:             # <<<<<<<<<<<<<<
 *                         m = dereference(set_iter)
 *                         if clip_table.find(m) != clip_table.end():
 */
        while (1) {
          __pyx_t_1 = ((__pyx_v_set_iter != __pyx_v_set_iter_end) != 0);
          if (!__pyx_t_1) break;

          /* "dysgu/graph.pyx":263
 *                     set_iter_end = mm_table.get_iterator_end()
 *                     while set_iter != set_iter_end:
 *                         m = dereference(set_iter)             # <<<<<<<<<<<<<<
 *                         if clip_table.find(m) != clip_table.end():
 *                             clip_table[m].erase(pair_to_int64(item_position, name))
 */
          __pyx_v_m = (*__pyx_v_set_iter);

          /* "dysgu/graph.pyx":264
 *                     while set_iter != set_iter_end:
 *                         m = dereference(set_iter)
 *                         if clip_table.find(m) != clip_table.end():             # <<<<<<<<<<<<<<
 *                             clip_table[m].erase(pair_to_int64(item_position, name))
 *                             if clip_table[m].empty():
 */
          __pyx_t_1 = ((__pyx_v_clip_table.find(__pyx_v_m) != __pyx_v_clip_table.end()) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":265
 *                         m = dereference(set_iter)
 *                         if clip_table.find(m) != clip_table.end():
 *                             clip_table[m].erase(pair_to_int64(item_position, name))             # <<<<<<<<<<<<<<
 *                             if clip_table[m].empty():
 *                                 if index == 0:
 */
            (__pyx_v_clip_table[__pyx_v_m]).erase(__pyx_f_5dysgu_5graph_pair_to_int64(__pyx_v_item_position, __pyx_v_name));

            /* "dysgu/graph.pyx":266
 *                         if clip_table.find(m) != clip_table.end():
 *                             clip_table[m].erase(pair_to_int64(item_position, name))
 *                             if clip_table[m].empty():             # <<<<<<<<<<<<<<
 *                                 if index == 0:
 *                                     self.n_local_minimizers_left -= 1
 */
            __pyx_t_1 = ((__pyx_v_clip_table[__pyx_v_m]).empty() != 0);
            if (__pyx_t_1) {

              /* "dysgu/graph.pyx":267
 *                             clip_table[m].erase(pair_to_int64(item_position, name))
 *                             if clip_table[m].empty():
 *                                 if index == 0:             # <<<<<<<<<<<<<<
 *                                     self.n_local_minimizers_left -= 1
 *                                 else:
 */
              __pyx_t_1 = ((__pyx_v_index == 0) != 0);
              if (__pyx_t_1) {

                /* "dysgu/graph.pyx":268
 *                             if clip_table[m].empty():
 *                                 if index == 0:
 *                                     self.n_local_minimizers_left -= 1             # <<<<<<<<<<<<<<
 *                                 else:
 *                                     self.n_local_minimizers_right -= 1
 */
                __pyx_v_self->n_local_minimizers_left = (__pyx_v_self->n_local_minimizers_left - 1);

                /* "dysgu/graph.pyx":267
 *                             clip_table[m].erase(pair_to_int64(item_position, name))
 *                             if clip_table[m].empty():
 *                                 if index == 0:             # <<<<<<<<<<<<<<
 *                                     self.n_local_minimizers_left -= 1
 *                                 else:
 */
                goto __pyx_L12;
              }

              /* "dysgu/graph.pyx":270
 *                                     self.n_local_minimizers_left -= 1
 *                                 else:
 *                                     self.n_local_minimizers_right -= 1             # <<<<<<<<<<<<<<
 * 
 *                         preincrement(set_iter)
 */
              /*else*/ {
                __pyx_v_self->n_local_minimizers_right = (__pyx_v_self->n_local_minimizers_right - 1);
              }
              __pyx_L12:;

              /* "dysgu/graph.pyx":266
 *                         if clip_table.find(m) != clip_table.end():
 *                             clip_table[m].erase(pair_to_int64(item_position, name))
 *                             if clip_table[m].empty():             # <<<<<<<<<<<<<<
 *                                 if index == 0:
 *                                     self.n_local_minimizers_left -= 1
 */
            }

            /* "dysgu/graph.pyx":264
 *                     while set_iter != set_iter_end:
 *                         m = dereference(set_iter)
 *                         if clip_table.find(m) != clip_table.end():             # <<<<<<<<<<<<<<
 *                             clip_table[m].erase(pair_to_int64(item_position, name))
 *                             if clip_table[m].empty():
 */
          }

          /* "dysgu/graph.pyx":272
 *                                     self.n_local_minimizers_right -= 1
 * 
 *                         preincrement(set_iter)             # <<<<<<<<<<<<<<
 *                     mm_table.erase(name)
 *             else:
 */
          (void)((++__pyx_v_set_iter));
        }

        /* "dysgu/graph.pyx":273
 * 
 *                         preincrement(set_iter)
 *                     mm_table.erase(name)             # <<<<<<<<<<<<<<
 *             else:
 *                 break
 */
        __pyx_v_mm_table.erase(__pyx_v_name);

        /* "dysgu/graph.pyx":259
 *                 scope.pop_front()
 * 
 *                 if mm_table.has_key(name):             # <<<<<<<<<<<<<<
 *                     set_iter = mm_table.get_iterator_begin()
 *                     set_iter_end = mm_table.get_iterator_end()
 */
      }

      /* "dysgu/graph.pyx":253
 *             if scope.empty():
 *                 break
 *             if abs(scope[0].first - position) > self.max_dist:             # <<<<<<<<<<<<<<
 * 
 *                 item_position = scope[0].first
 */
      goto __pyx_L6;
    }

    /* "dysgu/graph.pyx":275
 *                     mm_table.erase(name)
 *             else:
 *                 break             # <<<<<<<<<<<<<<
 * 
 *     cdef void _insert(self, seq, int cigar_start, int cigar_end, int input_read, int position,
 */
    /*else*/ {
      goto __pyx_L4_break;
    }
    __pyx_L6:;
  }
  __pyx_L4_break:;

  /* "dysgu/graph.pyx":240
 *             clip_table[m].insert(pair_to_int64(position, name))
 * 
 *     cdef void _refresh_scope(self, cpp_deque[cpp_pair[int, int]]& scope, int position, MinimizerTable& mm_table,             # <<<<<<<<<<<<<<
 *                              robin_map[uint64_t, unordered_set[uint64_t]]& clip_table, int index
 *                              ):
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_WriteUnraisable("dysgu.graph.ClipScoper._refresh_scope", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":277
 *                 break
 * 
 *     cdef void _insert(self, seq, int cigar_start, int cigar_end, int input_read, int position,             # <<<<<<<<<<<<<<
 *                       unordered_set[int]& clustered_nodes):
 *         # Find soft-clips of interest
 */

static void __pyx_f_5dysgu_5graph_10ClipScoper__insert(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, PyObject *__pyx_v_seq, int __pyx_v_cigar_start, int __pyx_v_cigar_end, int __pyx_v_input_read, int __pyx_v_position, robin_hood::unordered_set<int>  &__pyx_v_clustered_nodes) {
  PyObject *__pyx_v_clip_seq = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  __pyx_t_5dysgu_5graph_cpp_item __pyx_t_3;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("_insert", 0);

  /* "dysgu/graph.pyx":280
 *                       unordered_set[int]& clustered_nodes):
 *         # Find soft-clips of interest
 *         if cigar_start >= self.clip_length:             # <<<<<<<<<<<<<<
 *             clip_seq = left_soft_clips(seq, cigar_start)
 *             self._refresh_scope(self.scope_left, position, self.read_minimizers_left, self.clip_table_left, 0)
 */
  __pyx_t_1 = ((__pyx_v_cigar_start >= __pyx_v_self->clip_length) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":281
 *         # Find soft-clips of interest
 *         if cigar_start >= self.clip_length:
 *             clip_seq = left_soft_clips(seq, cigar_start)             # <<<<<<<<<<<<<<
 *             self._refresh_scope(self.scope_left, position, self.read_minimizers_left, self.clip_table_left, 0)
 *             self._add_m_find_candidates(clip_seq, input_read, 0, position, self.clip_table_left, clustered_nodes)
 */
    if (!(likely(PyUnicode_CheckExact(__pyx_v_seq))||((__pyx_v_seq) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "unicode", Py_TYPE(__pyx_v_seq)->tp_name), 0))) __PYX_ERR(1, 281, __pyx_L1_error)
    __pyx_t_2 = __pyx_f_5dysgu_5graph_left_soft_clips(((PyObject*)__pyx_v_seq), __pyx_v_cigar_start); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 281, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_v_clip_seq = ((PyObject*)__pyx_t_2);
    __pyx_t_2 = 0;

    /* "dysgu/graph.pyx":282
 *         if cigar_start >= self.clip_length:
 *             clip_seq = left_soft_clips(seq, cigar_start)
 *             self._refresh_scope(self.scope_left, position, self.read_minimizers_left, self.clip_table_left, 0)             # <<<<<<<<<<<<<<
 *             self._add_m_find_candidates(clip_seq, input_read, 0, position, self.clip_table_left, clustered_nodes)
 *             self.scope_left.push_back(cpp_item(position, input_read))
 */
    ((struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *)__pyx_v_self->__pyx_vtab)->_refresh_scope(__pyx_v_self, __pyx_v_self->scope_left, __pyx_v_position, __pyx_v_self->read_minimizers_left, __pyx_v_self->clip_table_left, 0);

    /* "dysgu/graph.pyx":283
 *             clip_seq = left_soft_clips(seq, cigar_start)
 *             self._refresh_scope(self.scope_left, position, self.read_minimizers_left, self.clip_table_left, 0)
 *             self._add_m_find_candidates(clip_seq, input_read, 0, position, self.clip_table_left, clustered_nodes)             # <<<<<<<<<<<<<<
 *             self.scope_left.push_back(cpp_item(position, input_read))
 * 
 */
    ((struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *)__pyx_v_self->__pyx_vtab)->_add_m_find_candidates(__pyx_v_self, __pyx_v_clip_seq, __pyx_v_input_read, 0, __pyx_v_position, __pyx_v_self->clip_table_left, __pyx_v_clustered_nodes);

    /* "dysgu/graph.pyx":284
 *             self._refresh_scope(self.scope_left, position, self.read_minimizers_left, self.clip_table_left, 0)
 *             self._add_m_find_candidates(clip_seq, input_read, 0, position, self.clip_table_left, clustered_nodes)
 *             self.scope_left.push_back(cpp_item(position, input_read))             # <<<<<<<<<<<<<<
 * 
 *         if cigar_end >= self.clip_length:
 */
    try {
      __pyx_t_3 = __pyx_t_5dysgu_5graph_cpp_item(__pyx_v_position, __pyx_v_input_read);
    } catch(...) {
      __Pyx_CppExn2PyErr();
      __PYX_ERR(1, 284, __pyx_L1_error)
    }
    __pyx_v_self->scope_left.push_back(__pyx_t_3);

    /* "dysgu/graph.pyx":280
 *                       unordered_set[int]& clustered_nodes):
 *         # Find soft-clips of interest
 *         if cigar_start >= self.clip_length:             # <<<<<<<<<<<<<<
 *             clip_seq = left_soft_clips(seq, cigar_start)
 *             self._refresh_scope(self.scope_left, position, self.read_minimizers_left, self.clip_table_left, 0)
 */
  }

  /* "dysgu/graph.pyx":286
 *             self.scope_left.push_back(cpp_item(position, input_read))
 * 
 *         if cigar_end >= self.clip_length:             # <<<<<<<<<<<<<<
 *             clip_seq = right_soft_clips(seq, cigar_end)
 *             self._refresh_scope(self.scope_right, position, self.read_minimizers_right, self.clip_table_right, 1)
 */
  __pyx_t_1 = ((__pyx_v_cigar_end >= __pyx_v_self->clip_length) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":287
 * 
 *         if cigar_end >= self.clip_length:
 *             clip_seq = right_soft_clips(seq, cigar_end)             # <<<<<<<<<<<<<<
 *             self._refresh_scope(self.scope_right, position, self.read_minimizers_right, self.clip_table_right, 1)
 *             self._add_m_find_candidates(clip_seq, input_read, 1, position, self.clip_table_right, clustered_nodes)
 */
    if (!(likely(PyUnicode_CheckExact(__pyx_v_seq))||((__pyx_v_seq) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "unicode", Py_TYPE(__pyx_v_seq)->tp_name), 0))) __PYX_ERR(1, 287, __pyx_L1_error)
    __pyx_t_2 = __pyx_f_5dysgu_5graph_right_soft_clips(((PyObject*)__pyx_v_seq), __pyx_v_cigar_end); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 287, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_XDECREF_SET(__pyx_v_clip_seq, ((PyObject*)__pyx_t_2));
    __pyx_t_2 = 0;

    /* "dysgu/graph.pyx":288
 *         if cigar_end >= self.clip_length:
 *             clip_seq = right_soft_clips(seq, cigar_end)
 *             self._refresh_scope(self.scope_right, position, self.read_minimizers_right, self.clip_table_right, 1)             # <<<<<<<<<<<<<<
 *             self._add_m_find_candidates(clip_seq, input_read, 1, position, self.clip_table_right, clustered_nodes)
 *             self.scope_right.push_back(cpp_item(position, input_read))
 */
    ((struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *)__pyx_v_self->__pyx_vtab)->_refresh_scope(__pyx_v_self, __pyx_v_self->scope_right, __pyx_v_position, __pyx_v_self->read_minimizers_right, __pyx_v_self->clip_table_right, 1);

    /* "dysgu/graph.pyx":289
 *             clip_seq = right_soft_clips(seq, cigar_end)
 *             self._refresh_scope(self.scope_right, position, self.read_minimizers_right, self.clip_table_right, 1)
 *             self._add_m_find_candidates(clip_seq, input_read, 1, position, self.clip_table_right, clustered_nodes)             # <<<<<<<<<<<<<<
 *             self.scope_right.push_back(cpp_item(position, input_read))
 * 
 */
    ((struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *)__pyx_v_self->__pyx_vtab)->_add_m_find_candidates(__pyx_v_self, __pyx_v_clip_seq, __pyx_v_input_read, 1, __pyx_v_position, __pyx_v_self->clip_table_right, __pyx_v_clustered_nodes);

    /* "dysgu/graph.pyx":290
 *             self._refresh_scope(self.scope_right, position, self.read_minimizers_right, self.clip_table_right, 1)
 *             self._add_m_find_candidates(clip_seq, input_read, 1, position, self.clip_table_right, clustered_nodes)
 *             self.scope_right.push_back(cpp_item(position, input_read))             # <<<<<<<<<<<<<<
 * 
 *     cdef void update(self, r, int input_read, int chrom, int position,
 */
    try {
      __pyx_t_3 = __pyx_t_5dysgu_5graph_cpp_item(__pyx_v_position, __pyx_v_input_read);
    } catch(...) {
      __Pyx_CppExn2PyErr();
      __PYX_ERR(1, 290, __pyx_L1_error)
    }
    __pyx_v_self->scope_right.push_back(__pyx_t_3);

    /* "dysgu/graph.pyx":286
 *             self.scope_left.push_back(cpp_item(position, input_read))
 * 
 *         if cigar_end >= self.clip_length:             # <<<<<<<<<<<<<<
 *             clip_seq = right_soft_clips(seq, cigar_end)
 *             self._refresh_scope(self.scope_right, position, self.read_minimizers_right, self.clip_table_right, 1)
 */
  }

  /* "dysgu/graph.pyx":277
 *                 break
 * 
 *     cdef void _insert(self, seq, int cigar_start, int cigar_end, int input_read, int position,             # <<<<<<<<<<<<<<
 *                       unordered_set[int]& clustered_nodes):
 *         # Find soft-clips of interest
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_WriteUnraisable("dysgu.graph.ClipScoper._insert", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_clip_seq);
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":292
 *             self.scope_right.push_back(cpp_item(position, input_read))
 * 
 *     cdef void update(self, r, int input_read, int chrom, int position,             # <<<<<<<<<<<<<<
 *                unordered_set[int]& clustered_nodes):
 * 
 */

static void __pyx_f_5dysgu_5graph_10ClipScoper_update(struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, PyObject *__pyx_v_r, int __pyx_v_input_read, int __pyx_v_chrom, int __pyx_v_position, robin_hood::unordered_set<int>  &__pyx_v_clustered_nodes) {
  PyObject *__pyx_v_clip_left = NULL;
  PyObject *__pyx_v_clip_right = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_t_5;
  int __pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("update", 0);

  /* "dysgu/graph.pyx":295
 *                unordered_set[int]& clustered_nodes):
 * 
 *         clip_left, clip_right = map_set_utils.clip_sizes(r)             # <<<<<<<<<<<<<<
 *         # Find candidate nodes with matching minimizers
 *         if chrom != self.current_chrom:
 */
  __pyx_t_1 = __pyx_f_5dysgu_13map_set_utils_clip_sizes(__pyx_v_r); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 295, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (likely(__pyx_t_1 != Py_None)) {
    PyObject* sequence = __pyx_t_1;
    Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
    if (unlikely(size != 2)) {
      if (size > 2) __Pyx_RaiseTooManyValuesError(2);
      else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
      __PYX_ERR(1, 295, __pyx_L1_error)
    }
    #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0); 
    __pyx_t_3 = PyTuple_GET_ITEM(sequence, 1); 
    __Pyx_INCREF(__pyx_t_2);
    __Pyx_INCREF(__pyx_t_3);
    #else
    __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 295, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 295, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    #endif
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  } else {
    __Pyx_RaiseNoneNotIterableError(); __PYX_ERR(1, 295, __pyx_L1_error)
  }
  __pyx_v_clip_left = __pyx_t_2;
  __pyx_t_2 = 0;
  __pyx_v_clip_right = __pyx_t_3;
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":297
 *         clip_left, clip_right = map_set_utils.clip_sizes(r)
 *         # Find candidate nodes with matching minimizers
 *         if chrom != self.current_chrom:             # <<<<<<<<<<<<<<
 *             self.scope_left.clear()
 *             self.scope_right.clear()
 */
  __pyx_t_4 = ((__pyx_v_chrom != __pyx_v_self->current_chrom) != 0);
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":298
 *         # Find candidate nodes with matching minimizers
 *         if chrom != self.current_chrom:
 *             self.scope_left.clear()             # <<<<<<<<<<<<<<
 *             self.scope_right.clear()
 *             self.clip_table_left.clear()
 */
    __pyx_v_self->scope_left.clear();

    /* "dysgu/graph.pyx":299
 *         if chrom != self.current_chrom:
 *             self.scope_left.clear()
 *             self.scope_right.clear()             # <<<<<<<<<<<<<<
 *             self.clip_table_left.clear()
 *             self.clip_table_right.clear()
 */
    __pyx_v_self->scope_right.clear();

    /* "dysgu/graph.pyx":300
 *             self.scope_left.clear()
 *             self.scope_right.clear()
 *             self.clip_table_left.clear()             # <<<<<<<<<<<<<<
 *             self.clip_table_right.clear()
 *             self.n_local_minimizers_left = 0
 */
    __pyx_v_self->clip_table_left.clear();

    /* "dysgu/graph.pyx":301
 *             self.scope_right.clear()
 *             self.clip_table_left.clear()
 *             self.clip_table_right.clear()             # <<<<<<<<<<<<<<
 *             self.n_local_minimizers_left = 0
 *             self.n_local_minimizers_right = 0
 */
    __pyx_v_self->clip_table_right.clear();

    /* "dysgu/graph.pyx":302
 *             self.clip_table_left.clear()
 *             self.clip_table_right.clear()
 *             self.n_local_minimizers_left = 0             # <<<<<<<<<<<<<<
 *             self.n_local_minimizers_right = 0
 *             self.current_chrom = chrom
 */
    __pyx_v_self->n_local_minimizers_left = 0;

    /* "dysgu/graph.pyx":303
 *             self.clip_table_right.clear()
 *             self.n_local_minimizers_left = 0
 *             self.n_local_minimizers_right = 0             # <<<<<<<<<<<<<<
 *             self.current_chrom = chrom
 *         self._insert(r.seq, clip_left, clip_right, input_read, position, clustered_nodes)
 */
    __pyx_v_self->n_local_minimizers_right = 0;

    /* "dysgu/graph.pyx":304
 *             self.n_local_minimizers_left = 0
 *             self.n_local_minimizers_right = 0
 *             self.current_chrom = chrom             # <<<<<<<<<<<<<<
 *         self._insert(r.seq, clip_left, clip_right, input_read, position, clustered_nodes)
 * 
 */
    __pyx_v_self->current_chrom = __pyx_v_chrom;

    /* "dysgu/graph.pyx":297
 *         clip_left, clip_right = map_set_utils.clip_sizes(r)
 *         # Find candidate nodes with matching minimizers
 *         if chrom != self.current_chrom:             # <<<<<<<<<<<<<<
 *             self.scope_left.clear()
 *             self.scope_right.clear()
 */
  }

  /* "dysgu/graph.pyx":305
 *             self.n_local_minimizers_right = 0
 *             self.current_chrom = chrom
 *         self._insert(r.seq, clip_left, clip_right, input_read, position, clustered_nodes)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_seq); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 305, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = __Pyx_PyInt_As_int(__pyx_v_clip_left); if (unlikely((__pyx_t_5 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 305, __pyx_L1_error)
  __pyx_t_6 = __Pyx_PyInt_As_int(__pyx_v_clip_right); if (unlikely((__pyx_t_6 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 305, __pyx_L1_error)
  ((struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *)__pyx_v_self->__pyx_vtab)->_insert(__pyx_v_self, __pyx_t_1, __pyx_t_5, __pyx_t_6, __pyx_v_input_read, __pyx_v_position, __pyx_v_clustered_nodes);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":292
 *             self.scope_right.push_back(cpp_item(position, input_read))
 * 
 *     cdef void update(self, r, int input_read, int chrom, int position,             # <<<<<<<<<<<<<<
 *                unordered_set[int]& clustered_nodes):
 * 
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_WriteUnraisable("dysgu.graph.ClipScoper.update", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_clip_left);
  __Pyx_XDECREF(__pyx_v_clip_right);
  __Pyx_RefNannyFinishContext();
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_10ClipScoper_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_10ClipScoper_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_10ClipScoper_2__reduce_cython__(((struct __pyx_obj_5dysgu_5graph_ClipScoper *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_10ClipScoper_2__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple_, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 2, __pyx_L1_error)

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.ClipScoper.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_10ClipScoper_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_10ClipScoper_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_10ClipScoper_4__setstate_cython__(((struct __pyx_obj_5dysgu_5graph_ClipScoper *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_10ClipScoper_4__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_ClipScoper *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":4
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__2, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 4, __pyx_L1_error)

  /* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.ClipScoper.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":316
 * 
 * 
 * cdef LocalVal make_local_val(int chrom2, int pos2, int node_name, ReadEnum_t read_enum, int length_from_cigar) nogil:             # <<<<<<<<<<<<<<
 *     cdef LocalVal item
 *     item.chrom2 = chrom2
 */

static struct __pyx_t_5dysgu_5graph_LocalVal __pyx_f_5dysgu_5graph_make_local_val(int __pyx_v_chrom2, int __pyx_v_pos2, int __pyx_v_node_name, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum, int __pyx_v_length_from_cigar) {
  struct __pyx_t_5dysgu_5graph_LocalVal __pyx_v_item;
  struct __pyx_t_5dysgu_5graph_LocalVal __pyx_r;

  /* "dysgu/graph.pyx":318
 * cdef LocalVal make_local_val(int chrom2, int pos2, int node_name, ReadEnum_t read_enum, int length_from_cigar) nogil:
 *     cdef LocalVal item
 *     item.chrom2 = chrom2             # <<<<<<<<<<<<<<
 *     item.pos2 = pos2
 *     item.node_name = node_name
 */
  __pyx_v_item.chrom2 = __pyx_v_chrom2;

  /* "dysgu/graph.pyx":319
 *     cdef LocalVal item
 *     item.chrom2 = chrom2
 *     item.pos2 = pos2             # <<<<<<<<<<<<<<
 *     item.node_name = node_name
 *     item.read_enum = read_enum
 */
  __pyx_v_item.pos2 = __pyx_v_pos2;

  /* "dysgu/graph.pyx":320
 *     item.chrom2 = chrom2
 *     item.pos2 = pos2
 *     item.node_name = node_name             # <<<<<<<<<<<<<<
 *     item.read_enum = read_enum
 *     item.length_from_cigar = length_from_cigar
 */
  __pyx_v_item.node_name = __pyx_v_node_name;

  /* "dysgu/graph.pyx":321
 *     item.pos2 = pos2
 *     item.node_name = node_name
 *     item.read_enum = read_enum             # <<<<<<<<<<<<<<
 *     item.length_from_cigar = length_from_cigar
 *     return item
 */
  __pyx_v_item.read_enum = __pyx_v_read_enum;

  /* "dysgu/graph.pyx":322
 *     item.node_name = node_name
 *     item.read_enum = read_enum
 *     item.length_from_cigar = length_from_cigar             # <<<<<<<<<<<<<<
 *     return item
 * 
 */
  __pyx_v_item.length_from_cigar = __pyx_v_length_from_cigar;

  /* "dysgu/graph.pyx":323
 *     item.read_enum = read_enum
 *     item.length_from_cigar = length_from_cigar
 *     return item             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_item;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":316
 * 
 * 
 * cdef LocalVal make_local_val(int chrom2, int pos2, int node_name, ReadEnum_t read_enum, int length_from_cigar) nogil:             # <<<<<<<<<<<<<<
 *     cdef LocalVal item
 *     item.chrom2 = chrom2
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "dysgu/graph.pyx":338
 *     cdef bint paired_end
 * 
 *     def __init__(self, max_dist, clst_dist, n_references, norm, thresh, paired_end):             # <<<<<<<<<<<<<<
 *         self.clst_dist = clst_dist
 *         self.max_dist = max_dist
 */

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_15PairedEndScoper_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_pw_5dysgu_5graph_15PairedEndScoper_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_max_dist = 0;
  PyObject *__pyx_v_clst_dist = 0;
  PyObject *__pyx_v_n_references = 0;
  PyObject *__pyx_v_norm = 0;
  PyObject *__pyx_v_thresh = 0;
  PyObject *__pyx_v_paired_end = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_max_dist,&__pyx_n_s_clst_dist,&__pyx_n_s_n_references,&__pyx_n_s_norm,&__pyx_n_s_thresh,&__pyx_n_s_paired_end,0};
    PyObject* values[6] = {0,0,0,0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_max_dist)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_clst_dist)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 6, 6, 1); __PYX_ERR(1, 338, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_n_references)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 6, 6, 2); __PYX_ERR(1, 338, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  3:
        if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_norm)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 6, 6, 3); __PYX_ERR(1, 338, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  4:
        if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_thresh)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 6, 6, 4); __PYX_ERR(1, 338, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  5:
        if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_paired_end)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 6, 6, 5); __PYX_ERR(1, 338, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(1, 338, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 6) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
      values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
      values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
      values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
    }
    __pyx_v_max_dist = values[0];
    __pyx_v_clst_dist = values[1];
    __pyx_v_n_references = values[2];
    __pyx_v_norm = values[3];
    __pyx_v_thresh = values[4];
    __pyx_v_paired_end = values[5];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__init__", 1, 6, 6, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 338, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.PairedEndScoper.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_15PairedEndScoper___init__(((struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)__pyx_v_self), __pyx_v_max_dist, __pyx_v_clst_dist, __pyx_v_n_references, __pyx_v_norm, __pyx_v_thresh, __pyx_v_paired_end);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_15PairedEndScoper___init__(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, PyObject *__pyx_v_max_dist, PyObject *__pyx_v_clst_dist, PyObject *__pyx_v_n_references, PyObject *__pyx_v_norm, PyObject *__pyx_v_thresh, PyObject *__pyx_v_paired_end) {
  std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal>  __pyx_v_scope;
  CYTHON_UNUSED PyObject *__pyx_v_n = NULL;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  float __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  Py_ssize_t __pyx_t_6;
  PyObject *(*__pyx_t_7)(PyObject *);
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__init__", 0);

  /* "dysgu/graph.pyx":339
 * 
 *     def __init__(self, max_dist, clst_dist, n_references, norm, thresh, paired_end):
 *         self.clst_dist = clst_dist             # <<<<<<<<<<<<<<
 *         self.max_dist = max_dist
 *         self.local_chrom = -1
 */
  __pyx_t_1 = __Pyx_PyInt_As_int(__pyx_v_clst_dist); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 339, __pyx_L1_error)
  __pyx_v_self->clst_dist = __pyx_t_1;

  /* "dysgu/graph.pyx":340
 *     def __init__(self, max_dist, clst_dist, n_references, norm, thresh, paired_end):
 *         self.clst_dist = clst_dist
 *         self.max_dist = max_dist             # <<<<<<<<<<<<<<
 *         self.local_chrom = -1
 *         self.norm = norm
 */
  __pyx_t_1 = __Pyx_PyInt_As_int(__pyx_v_max_dist); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 340, __pyx_L1_error)
  __pyx_v_self->max_dist = __pyx_t_1;

  /* "dysgu/graph.pyx":341
 *         self.clst_dist = clst_dist
 *         self.max_dist = max_dist
 *         self.local_chrom = -1             # <<<<<<<<<<<<<<
 *         self.norm = norm
 *         self.thresh = thresh
 */
  __pyx_v_self->local_chrom = -1;

  /* "dysgu/graph.pyx":342
 *         self.max_dist = max_dist
 *         self.local_chrom = -1
 *         self.norm = norm             # <<<<<<<<<<<<<<
 *         self.thresh = thresh
 *         self.paired_end = paired_end
 */
  __pyx_t_2 = __pyx_PyFloat_AsFloat(__pyx_v_norm); if (unlikely((__pyx_t_2 == (float)-1) && PyErr_Occurred())) __PYX_ERR(1, 342, __pyx_L1_error)
  __pyx_v_self->norm = __pyx_t_2;

  /* "dysgu/graph.pyx":343
 *         self.local_chrom = -1
 *         self.norm = norm
 *         self.thresh = thresh             # <<<<<<<<<<<<<<
 *         self.paired_end = paired_end
 * 
 */
  __pyx_t_2 = __pyx_PyFloat_AsFloat(__pyx_v_thresh); if (unlikely((__pyx_t_2 == (float)-1) && PyErr_Occurred())) __PYX_ERR(1, 343, __pyx_L1_error)
  __pyx_v_self->thresh = __pyx_t_2;

  /* "dysgu/graph.pyx":344
 *         self.norm = norm
 *         self.thresh = thresh
 *         self.paired_end = paired_end             # <<<<<<<<<<<<<<
 * 
 *         cdef cpp_map[int, LocalVal] scope
 */
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_paired_end); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 344, __pyx_L1_error)
  __pyx_v_self->paired_end = __pyx_t_3;

  /* "dysgu/graph.pyx":347
 * 
 *         cdef cpp_map[int, LocalVal] scope
 *         for n in range(n_references + 1):  # Add one for special 'insertion chromosome'             # <<<<<<<<<<<<<<
 *             self.chrom_scope.push_back(scope)
 * 
 */
  __pyx_t_4 = __Pyx_PyInt_AddObjC(__pyx_v_n_references, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 347, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = __Pyx_PyObject_CallOneArg(__pyx_builtin_range, __pyx_t_4); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 347, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (likely(PyList_CheckExact(__pyx_t_5)) || PyTuple_CheckExact(__pyx_t_5)) {
    __pyx_t_4 = __pyx_t_5; __Pyx_INCREF(__pyx_t_4); __pyx_t_6 = 0;
    __pyx_t_7 = NULL;
  } else {
    __pyx_t_6 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 347, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_7 = Py_TYPE(__pyx_t_4)->tp_iternext; if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 347, __pyx_L1_error)
  }
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  for (;;) {
    if (likely(!__pyx_t_7)) {
      if (likely(PyList_CheckExact(__pyx_t_4))) {
        if (__pyx_t_6 >= PyList_GET_SIZE(__pyx_t_4)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_6); __Pyx_INCREF(__pyx_t_5); __pyx_t_6++; if (unlikely(0 < 0)) __PYX_ERR(1, 347, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 347, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      } else {
        if (__pyx_t_6 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_6); __Pyx_INCREF(__pyx_t_5); __pyx_t_6++; if (unlikely(0 < 0)) __PYX_ERR(1, 347, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 347, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      }
    } else {
      __pyx_t_5 = __pyx_t_7(__pyx_t_4);
      if (unlikely(!__pyx_t_5)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 347, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_5);
    }
    __Pyx_XDECREF_SET(__pyx_v_n, __pyx_t_5);
    __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":348
 *         cdef cpp_map[int, LocalVal] scope
 *         for n in range(n_references + 1):  # Add one for special 'insertion chromosome'
 *             self.chrom_scope.push_back(scope)             # <<<<<<<<<<<<<<
 * 
 *     cdef void empty_scopes(self) nogil:
 */
    try {
      __pyx_v_self->chrom_scope.push_back(__pyx_v_scope);
    } catch(...) {
      __Pyx_CppExn2PyErr();
      __PYX_ERR(1, 348, __pyx_L1_error)
    }

    /* "dysgu/graph.pyx":347
 * 
 *         cdef cpp_map[int, LocalVal] scope
 *         for n in range(n_references + 1):  # Add one for special 'insertion chromosome'             # <<<<<<<<<<<<<<
 *             self.chrom_scope.push_back(scope)
 * 
 */
  }
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

  /* "dysgu/graph.pyx":338
 *     cdef bint paired_end
 * 
 *     def __init__(self, max_dist, clst_dist, n_references, norm, thresh, paired_end):             # <<<<<<<<<<<<<<
 *         self.clst_dist = clst_dist
 *         self.max_dist = max_dist
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("dysgu.graph.PairedEndScoper.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_n);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":350
 *             self.chrom_scope.push_back(scope)
 * 
 *     cdef void empty_scopes(self) nogil:             # <<<<<<<<<<<<<<
 *         for idx in range(self.chrom_scope.size()):
 *             if not self.chrom_scope[idx].empty():
 */

static void __pyx_f_5dysgu_5graph_15PairedEndScoper_empty_scopes(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self) {
  std::vector<std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> > ::size_type __pyx_v_idx;
  std::vector<std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> > ::size_type __pyx_t_1;
  std::vector<std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> > ::size_type __pyx_t_2;
  std::vector<std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> > ::size_type __pyx_t_3;
  int __pyx_t_4;

  /* "dysgu/graph.pyx":351
 * 
 *     cdef void empty_scopes(self) nogil:
 *         for idx in range(self.chrom_scope.size()):             # <<<<<<<<<<<<<<
 *             if not self.chrom_scope[idx].empty():
 *                 self.chrom_scope[idx].clear()
 */
  __pyx_t_1 = __pyx_v_self->chrom_scope.size();
  __pyx_t_2 = __pyx_t_1;
  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
    __pyx_v_idx = __pyx_t_3;

    /* "dysgu/graph.pyx":352
 *     cdef void empty_scopes(self) nogil:
 *         for idx in range(self.chrom_scope.size()):
 *             if not self.chrom_scope[idx].empty():             # <<<<<<<<<<<<<<
 *                 self.chrom_scope[idx].clear()
 *         self.loci.clear()
 */
    __pyx_t_4 = ((!((__pyx_v_self->chrom_scope[__pyx_v_idx]).empty() != 0)) != 0);
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":353
 *         for idx in range(self.chrom_scope.size()):
 *             if not self.chrom_scope[idx].empty():
 *                 self.chrom_scope[idx].clear()             # <<<<<<<<<<<<<<
 *         self.loci.clear()
 * 
 */
      (__pyx_v_self->chrom_scope[__pyx_v_idx]).clear();

      /* "dysgu/graph.pyx":352
 *     cdef void empty_scopes(self) nogil:
 *         for idx in range(self.chrom_scope.size()):
 *             if not self.chrom_scope[idx].empty():             # <<<<<<<<<<<<<<
 *                 self.chrom_scope[idx].clear()
 *         self.loci.clear()
 */
    }
  }

  /* "dysgu/graph.pyx":354
 *             if not self.chrom_scope[idx].empty():
 *                 self.chrom_scope[idx].clear()
 *         self.loci.clear()             # <<<<<<<<<<<<<<
 * 
 *     cdef vector[int] find_other_nodes(self, int node_name, int current_chrom, int current_pos, int chrom2, int pos2,
 */
  __pyx_v_self->loci.clear();

  /* "dysgu/graph.pyx":350
 *             self.chrom_scope.push_back(scope)
 * 
 *     cdef void empty_scopes(self) nogil:             # <<<<<<<<<<<<<<
 *         for idx in range(self.chrom_scope.size()):
 *             if not self.chrom_scope[idx].empty():
 */

  /* function exit code */
}

/* "dysgu/graph.pyx":356
 *         self.loci.clear()
 * 
 *     cdef vector[int] find_other_nodes(self, int node_name, int current_chrom, int current_pos, int chrom2, int pos2,             # <<<<<<<<<<<<<<
 *                                       ReadEnum_t read_enum, int length_from_cigar, bint trust_ins_len) nogil:
 * 
 */

static std::vector<int>  __pyx_f_5dysgu_5graph_15PairedEndScoper_find_other_nodes(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, int __pyx_v_node_name, int __pyx_v_current_chrom, int __pyx_v_current_pos, int __pyx_v_chrom2, int __pyx_v_pos2, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum, int __pyx_v_length_from_cigar, int __pyx_v_trust_ins_len) {
  int __pyx_v_steps;
  int __pyx_v_node_name2;
  int __pyx_v_sep;
  int __pyx_v_sep2;
  std::vector<int>  __pyx_v_found2;
  std::vector<int>  __pyx_v_found_exact;
  std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal>  *__pyx_v_forward_scope;
  std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> ::iterator __pyx_v_local_it;
  std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> ::iterator __pyx_v_local_it2;
  std::pair<int,struct __pyx_t_5dysgu_5graph_LocalVal>  __pyx_v_vitem;
  float __pyx_v_max_span;
  float __pyx_v_span_distance;
  std::vector<int>  __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  int __pyx_t_5;
  float __pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "dysgu/graph.pyx":360
 * 
 *         cdef int idx, i, count_back, steps, node_name2
 *         cdef int sep = 0             # <<<<<<<<<<<<<<
 *         cdef int sep2 = 0
 *         cdef vector[int] found2
 */
  __pyx_v_sep = 0;

  /* "dysgu/graph.pyx":361
 *         cdef int idx, i, count_back, steps, node_name2
 *         cdef int sep = 0
 *         cdef int sep2 = 0             # <<<<<<<<<<<<<<
 *         cdef vector[int] found2
 *         cdef vector[int] found_exact
 */
  __pyx_v_sep2 = 0;

  /* "dysgu/graph.pyx":364
 *         cdef vector[int] found2
 *         cdef vector[int] found_exact
 *         cdef cpp_map[int, LocalVal]* forward_scope = &self.chrom_scope[chrom2]             # <<<<<<<<<<<<<<
 * 
 *         if chrom2 == 10000000:
 */
  __pyx_v_forward_scope = (&(__pyx_v_self->chrom_scope[__pyx_v_chrom2]));

  /* "dysgu/graph.pyx":366
 *         cdef cpp_map[int, LocalVal]* forward_scope = &self.chrom_scope[chrom2]
 * 
 *         if chrom2 == 10000000:             # <<<<<<<<<<<<<<
 *             forward_scope = &self.chrom_scope.back()
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_chrom2 == 0x989680) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":367
 * 
 *         if chrom2 == 10000000:
 *             forward_scope = &self.chrom_scope.back()             # <<<<<<<<<<<<<<
 *         else:
 *             forward_scope = &self.chrom_scope[chrom2]
 */
    __pyx_v_forward_scope = (&__pyx_v_self->chrom_scope.back());

    /* "dysgu/graph.pyx":366
 *         cdef cpp_map[int, LocalVal]* forward_scope = &self.chrom_scope[chrom2]
 * 
 *         if chrom2 == 10000000:             # <<<<<<<<<<<<<<
 *             forward_scope = &self.chrom_scope.back()
 *         else:
 */
    goto __pyx_L3;
  }

  /* "dysgu/graph.pyx":369
 *             forward_scope = &self.chrom_scope.back()
 *         else:
 *             forward_scope = &self.chrom_scope[chrom2]             # <<<<<<<<<<<<<<
 * 
 *         cdef cpp_map[int, LocalVal].iterator local_it, local_it2  #itr
 */
  /*else*/ {
    __pyx_v_forward_scope = (&(__pyx_v_self->chrom_scope[__pyx_v_chrom2]));
  }
  __pyx_L3:;

  /* "dysgu/graph.pyx":383
 * 
 *         # Re-initialize empty
 *         if current_chrom != self.local_chrom:             # <<<<<<<<<<<<<<
 *             self.local_chrom = current_chrom
 *             self.empty_scopes()
 */
  __pyx_t_1 = ((__pyx_v_current_chrom != __pyx_v_self->local_chrom) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":384
 *         # Re-initialize empty
 *         if current_chrom != self.local_chrom:
 *             self.local_chrom = current_chrom             # <<<<<<<<<<<<<<
 *             self.empty_scopes()
 * 
 */
    __pyx_v_self->local_chrom = __pyx_v_current_chrom;

    /* "dysgu/graph.pyx":385
 *         if current_chrom != self.local_chrom:
 *             self.local_chrom = current_chrom
 *             self.empty_scopes()             # <<<<<<<<<<<<<<
 * 
 *         if not self.loci.empty():
 */
    ((struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper *)__pyx_v_self->__pyx_vtab)->empty_scopes(__pyx_v_self);

    /* "dysgu/graph.pyx":383
 * 
 *         # Re-initialize empty
 *         if current_chrom != self.local_chrom:             # <<<<<<<<<<<<<<
 *             self.local_chrom = current_chrom
 *             self.empty_scopes()
 */
  }

  /* "dysgu/graph.pyx":387
 *             self.empty_scopes()
 * 
 *         if not self.loci.empty():             # <<<<<<<<<<<<<<
 * 
 *             # Erase items out of range in forward scope
 */
  __pyx_t_1 = ((!(__pyx_v_self->loci.empty() != 0)) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":390
 * 
 *             # Erase items out of range in forward scope
 *             local_it = self.loci.lower_bound(current_pos - self.clst_dist)             # <<<<<<<<<<<<<<
 *             local_it2 = self.loci.begin()
 *             while local_it2 != local_it:
 */
    __pyx_v_local_it = __pyx_v_self->loci.lower_bound((__pyx_v_current_pos - __pyx_v_self->clst_dist));

    /* "dysgu/graph.pyx":391
 *             # Erase items out of range in forward scope
 *             local_it = self.loci.lower_bound(current_pos - self.clst_dist)
 *             local_it2 = self.loci.begin()             # <<<<<<<<<<<<<<
 *             while local_it2 != local_it:
 *                 vitem = dereference(local_it2)
 */
    __pyx_v_local_it2 = __pyx_v_self->loci.begin();

    /* "dysgu/graph.pyx":392
 *             local_it = self.loci.lower_bound(current_pos - self.clst_dist)
 *             local_it2 = self.loci.begin()
 *             while local_it2 != local_it:             # <<<<<<<<<<<<<<
 *                 vitem = dereference(local_it2)
 *                 self.chrom_scope[vitem.second.chrom2].erase(vitem.second.pos2)
 */
    while (1) {
      __pyx_t_1 = ((__pyx_v_local_it2 != __pyx_v_local_it) != 0);
      if (!__pyx_t_1) break;

      /* "dysgu/graph.pyx":393
 *             local_it2 = self.loci.begin()
 *             while local_it2 != local_it:
 *                 vitem = dereference(local_it2)             # <<<<<<<<<<<<<<
 *                 self.chrom_scope[vitem.second.chrom2].erase(vitem.second.pos2)
 *                 preincrement(local_it2)
 */
      __pyx_v_vitem = (*__pyx_v_local_it2);

      /* "dysgu/graph.pyx":394
 *             while local_it2 != local_it:
 *                 vitem = dereference(local_it2)
 *                 self.chrom_scope[vitem.second.chrom2].erase(vitem.second.pos2)             # <<<<<<<<<<<<<<
 *                 preincrement(local_it2)
 * 
 */
      (void)((__pyx_v_self->chrom_scope[__pyx_v_vitem.second.chrom2]).erase(__pyx_v_vitem.second.pos2));

      /* "dysgu/graph.pyx":395
 *                 vitem = dereference(local_it2)
 *                 self.chrom_scope[vitem.second.chrom2].erase(vitem.second.pos2)
 *                 preincrement(local_it2)             # <<<<<<<<<<<<<<
 * 
 *             # Erase items out of range in local scope
 */
      (void)((++__pyx_v_local_it2));
    }

    /* "dysgu/graph.pyx":398
 * 
 *             # Erase items out of range in local scope
 *             if local_it != self.loci.begin():             # <<<<<<<<<<<<<<
 *                 self.loci.erase(self.loci.begin(), local_it)
 * 
 */
    __pyx_t_1 = ((__pyx_v_local_it != __pyx_v_self->loci.begin()) != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":399
 *             # Erase items out of range in local scope
 *             if local_it != self.loci.begin():
 *                 self.loci.erase(self.loci.begin(), local_it)             # <<<<<<<<<<<<<<
 * 
 *             # Search FORWARD scope
 */
      __pyx_v_self->loci.erase(__pyx_v_self->loci.begin(), __pyx_v_local_it);

      /* "dysgu/graph.pyx":398
 * 
 *             # Erase items out of range in local scope
 *             if local_it != self.loci.begin():             # <<<<<<<<<<<<<<
 *                 self.loci.erase(self.loci.begin(), local_it)
 * 
 */
    }

    /* "dysgu/graph.pyx":402
 * 
 *             # Search FORWARD scope
 *             local_it = forward_scope.lower_bound(pos2)             # <<<<<<<<<<<<<<
 * 
 *             steps = 0
 */
    __pyx_v_local_it = __pyx_v_forward_scope->lower_bound(__pyx_v_pos2);

    /* "dysgu/graph.pyx":404
 *             local_it = forward_scope.lower_bound(pos2)
 * 
 *             steps = 0             # <<<<<<<<<<<<<<
 *             if local_it != forward_scope.end():
 *                 while steps < 6:
 */
    __pyx_v_steps = 0;

    /* "dysgu/graph.pyx":405
 * 
 *             steps = 0
 *             if local_it != forward_scope.end():             # <<<<<<<<<<<<<<
 *                 while steps < 6:
 *                     vitem = dereference(local_it)
 */
    __pyx_t_1 = ((__pyx_v_local_it != __pyx_v_forward_scope->end()) != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":406
 *             steps = 0
 *             if local_it != forward_scope.end():
 *                 while steps < 6:             # <<<<<<<<<<<<<<
 *                     vitem = dereference(local_it)
 * 
 */
      while (1) {
        __pyx_t_1 = ((__pyx_v_steps < 6) != 0);
        if (!__pyx_t_1) break;

        /* "dysgu/graph.pyx":407
 *             if local_it != forward_scope.end():
 *                 while steps < 6:
 *                     vitem = dereference(local_it)             # <<<<<<<<<<<<<<
 * 
 *                     if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):
 */
        __pyx_v_vitem = (*__pyx_v_local_it);

        /* "dysgu/graph.pyx":409
 *                     vitem = dereference(local_it)
 * 
 *                     if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):             # <<<<<<<<<<<<<<
 *                     # Below: this increases specificity slightly but hurts sensitivity for short-reads (del), but decreases both for insertions
 *                     # if (read_enum == DELETION and vitem.second.read_enum != DELETION) or (read_enum == INSERTION and vitem.second.read_enum != INSERTION) \
 */
        __pyx_t_2 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_DELETION) != 0);
        if (!__pyx_t_2) {
          goto __pyx_L14_next_or;
        } else {
        }
        __pyx_t_2 = ((__pyx_v_vitem.second.read_enum == __pyx_e_5dysgu_5graph_INSERTION) != 0);
        if (!__pyx_t_2) {
        } else {
          __pyx_t_1 = __pyx_t_2;
          goto __pyx_L13_bool_binop_done;
        }
        __pyx_L14_next_or:;
        __pyx_t_2 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_INSERTION) != 0);
        if (__pyx_t_2) {
        } else {
          __pyx_t_1 = __pyx_t_2;
          goto __pyx_L13_bool_binop_done;
        }
        __pyx_t_2 = ((__pyx_v_vitem.second.read_enum == __pyx_e_5dysgu_5graph_DELETION) != 0);
        __pyx_t_1 = __pyx_t_2;
        __pyx_L13_bool_binop_done:;
        if (__pyx_t_1) {

          /* "dysgu/graph.pyx":413
 *                     # if (read_enum == DELETION and vitem.second.read_enum != DELETION) or (read_enum == INSERTION and vitem.second.read_enum != INSERTION) \
 *                     #       or (vitem.second.read_enum == DELETION and read_enum != DELETION) or (vitem.second.read_enum == INSERTION and read_enum != INSERTION):
 *                         steps += 1             # <<<<<<<<<<<<<<
 *                         continue  # Dont connect insertions to deletions
 * 
 */
          __pyx_v_steps = (__pyx_v_steps + 1);

          /* "dysgu/graph.pyx":414
 *                     #       or (vitem.second.read_enum == DELETION and read_enum != DELETION) or (vitem.second.read_enum == INSERTION and read_enum != INSERTION):
 *                         steps += 1
 *                         continue  # Dont connect insertions to deletions             # <<<<<<<<<<<<<<
 * 
 *                     node_name2 = vitem.second.node_name
 */
          goto __pyx_L10_continue;

          /* "dysgu/graph.pyx":409
 *                     vitem = dereference(local_it)
 * 
 *                     if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):             # <<<<<<<<<<<<<<
 *                     # Below: this increases specificity slightly but hurts sensitivity for short-reads (del), but decreases both for insertions
 *                     # if (read_enum == DELETION and vitem.second.read_enum != DELETION) or (read_enum == INSERTION and vitem.second.read_enum != INSERTION) \
 */
        }

        /* "dysgu/graph.pyx":416
 *                         continue  # Dont connect insertions to deletions
 * 
 *                     node_name2 = vitem.second.node_name             # <<<<<<<<<<<<<<
 *                     if node_name2 != node_name:  # Can happen due to within-read events
 *                         # if node_name == 155:
 */
        __pyx_t_3 = __pyx_v_vitem.second.node_name;
        __pyx_v_node_name2 = __pyx_t_3;

        /* "dysgu/graph.pyx":417
 * 
 *                     node_name2 = vitem.second.node_name
 *                     if node_name2 != node_name:  # Can happen due to within-read events             # <<<<<<<<<<<<<<
 *                         # if node_name == 155:
 *                         #     echo("-->", node_name, node_name2, current_chrom == chrom2, current_pos, pos2, pos2 - current_pos, vitem.second.pos2 - vitem.first,
 */
        __pyx_t_1 = ((__pyx_v_node_name2 != __pyx_v_node_name) != 0);
        if (__pyx_t_1) {

          /* "dysgu/graph.pyx":423
 *                         #          )
 *                         #     echo(read_enum, vitem.second.read_enum, read_enum == INSERTION, vitem.second.read_enum == DELETION)
 *                         if current_chrom != chrom2 or is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2):             # <<<<<<<<<<<<<<
 * 
 *                             sep = c_abs(vitem.first - pos2)
 */
          __pyx_t_2 = ((__pyx_v_current_chrom != __pyx_v_chrom2) != 0);
          if (!__pyx_t_2) {
          } else {
            __pyx_t_1 = __pyx_t_2;
            goto __pyx_L19_bool_binop_done;
          }
          __pyx_t_2 = (__pyx_f_5dysgu_13map_set_utils_is_reciprocal_overlapping(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2) != 0);
          __pyx_t_1 = __pyx_t_2;
          __pyx_L19_bool_binop_done:;
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":425
 *                         if current_chrom != chrom2 or is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2):
 * 
 *                             sep = c_abs(vitem.first - pos2)             # <<<<<<<<<<<<<<
 *                             sep2 = c_abs(vitem.second.pos2 - current_pos)
 * 
 */
            __pyx_v_sep = abs((__pyx_v_vitem.first - __pyx_v_pos2));

            /* "dysgu/graph.pyx":426
 * 
 *                             sep = c_abs(vitem.first - pos2)
 *                             sep2 = c_abs(vitem.second.pos2 - current_pos)             # <<<<<<<<<<<<<<
 * 
 *                             if sep < self.max_dist and sep2 < self.max_dist:
 */
            __pyx_v_sep2 = abs((__pyx_v_vitem.second.pos2 - __pyx_v_current_pos));

            /* "dysgu/graph.pyx":428
 *                             sep2 = c_abs(vitem.second.pos2 - current_pos)
 * 
 *                             if sep < self.max_dist and sep2 < self.max_dist:             # <<<<<<<<<<<<<<
 *                                 if sep < 35:
 * 
 */
            __pyx_t_2 = ((__pyx_v_sep < __pyx_v_self->max_dist) != 0);
            if (__pyx_t_2) {
            } else {
              __pyx_t_1 = __pyx_t_2;
              goto __pyx_L22_bool_binop_done;
            }
            __pyx_t_2 = ((__pyx_v_sep2 < __pyx_v_self->max_dist) != 0);
            __pyx_t_1 = __pyx_t_2;
            __pyx_L22_bool_binop_done:;
            if (__pyx_t_1) {

              /* "dysgu/graph.pyx":429
 * 
 *                             if sep < self.max_dist and sep2 < self.max_dist:
 *                                 if sep < 35:             # <<<<<<<<<<<<<<
 * 
 *                                     if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 */
              __pyx_t_1 = ((__pyx_v_sep < 35) != 0);
              if (__pyx_t_1) {

                /* "dysgu/graph.pyx":431
 *                                 if sep < 35:
 * 
 *                                     if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:             # <<<<<<<<<<<<<<
 *                                         max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 *                                         span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 */
                __pyx_t_2 = ((__pyx_v_length_from_cigar > 0) != 0);
                if (__pyx_t_2) {
                } else {
                  __pyx_t_1 = __pyx_t_2;
                  goto __pyx_L26_bool_binop_done;
                }
                __pyx_t_2 = ((__pyx_v_vitem.second.length_from_cigar > 0) != 0);
                __pyx_t_1 = __pyx_t_2;
                __pyx_L26_bool_binop_done:;
                if (__pyx_t_1) {

                  /* "dysgu/graph.pyx":432
 * 
 *                                     if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 *                                         max_span = max(length_from_cigar, vitem.second.length_from_cigar)             # <<<<<<<<<<<<<<
 *                                         span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 *                                         # echo("hi", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 */
                  __pyx_t_3 = __pyx_v_vitem.second.length_from_cigar;
                  __pyx_t_4 = __pyx_v_length_from_cigar;
                  if (((__pyx_t_3 > __pyx_t_4) != 0)) {
                    __pyx_t_5 = __pyx_t_3;
                  } else {
                    __pyx_t_5 = __pyx_t_4;
                  }
                  __pyx_v_max_span = __pyx_t_5;

                  /* "dysgu/graph.pyx":433
 *                                     if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 *                                         max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 *                                         span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span             # <<<<<<<<<<<<<<
 *                                         # echo("hi", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                         if span_distance < 0.8:
 */
                  __pyx_t_6 = ((float)abs((__pyx_v_length_from_cigar - __pyx_v_vitem.second.length_from_cigar)));
                  if (unlikely(__pyx_v_max_span == 0)) {
                    #ifdef WITH_THREAD
                    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                    #endif
                    PyErr_SetString(PyExc_ZeroDivisionError, "float division");
                    #ifdef WITH_THREAD
                    __Pyx_PyGILState_Release(__pyx_gilstate_save);
                    #endif
                    __PYX_ERR(1, 433, __pyx_L1_error)
                  }
                  __pyx_v_span_distance = (__pyx_t_6 / __pyx_v_max_span);

                  /* "dysgu/graph.pyx":435
 *                                         span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 *                                         # echo("hi", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                         if span_distance < 0.8:             # <<<<<<<<<<<<<<
 *                                             found_exact.push_back(node_name2)
 *                                     else:
 */
                  __pyx_t_1 = ((__pyx_v_span_distance < 0.8) != 0);
                  if (__pyx_t_1) {

                    /* "dysgu/graph.pyx":436
 *                                         # echo("hi", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                         if span_distance < 0.8:
 *                                             found_exact.push_back(node_name2)             # <<<<<<<<<<<<<<
 *                                     else:
 *                                         found_exact.push_back(node_name2)
 */
                    try {
                      __pyx_v_found_exact.push_back(__pyx_v_node_name2);
                    } catch(...) {
                      #ifdef WITH_THREAD
                      PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                      #endif
                      __Pyx_CppExn2PyErr();
                      #ifdef WITH_THREAD
                      __Pyx_PyGILState_Release(__pyx_gilstate_save);
                      #endif
                      __PYX_ERR(1, 436, __pyx_L1_error)
                    }

                    /* "dysgu/graph.pyx":435
 *                                         span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 *                                         # echo("hi", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                         if span_distance < 0.8:             # <<<<<<<<<<<<<<
 *                                             found_exact.push_back(node_name2)
 *                                     else:
 */
                  }

                  /* "dysgu/graph.pyx":431
 *                                 if sep < 35:
 * 
 *                                     if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:             # <<<<<<<<<<<<<<
 *                                         max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 *                                         span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 */
                  goto __pyx_L25;
                }

                /* "dysgu/graph.pyx":438
 *                                             found_exact.push_back(node_name2)
 *                                     else:
 *                                         found_exact.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 */
                /*else*/ {
                  try {
                    __pyx_v_found_exact.push_back(__pyx_v_node_name2);
                  } catch(...) {
                    #ifdef WITH_THREAD
                    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                    #endif
                    __Pyx_CppExn2PyErr();
                    #ifdef WITH_THREAD
                    __Pyx_PyGILState_Release(__pyx_gilstate_save);
                    #endif
                    __PYX_ERR(1, 438, __pyx_L1_error)
                  }
                }
                __pyx_L25:;

                /* "dysgu/graph.pyx":429
 * 
 *                             if sep < self.max_dist and sep2 < self.max_dist:
 *                                 if sep < 35:             # <<<<<<<<<<<<<<
 * 
 *                                     if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 */
                goto __pyx_L24;
              }

              /* "dysgu/graph.pyx":440
 *                                         found_exact.push_back(node_name2)
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                     found2.push_back(node_name2)
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 */
              __pyx_t_1 = (__pyx_f_5dysgu_13map_set_utils_span_position_distance(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2, __pyx_v_self->norm, __pyx_v_self->thresh, ((__pyx_t_5dysgu_13map_set_utils_ReadEnum_t)__pyx_v_read_enum), __pyx_v_self->paired_end, __pyx_v_length_from_cigar, __pyx_v_vitem.second.length_from_cigar, __pyx_v_trust_ins_len) != 0);
              if (__pyx_t_1) {

                /* "dysgu/graph.pyx":441
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                     found2.push_back(node_name2)             # <<<<<<<<<<<<<<
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                 found2.push_back(node_name2)
 */
                try {
                  __pyx_v_found2.push_back(__pyx_v_node_name2);
                } catch(...) {
                  #ifdef WITH_THREAD
                  PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                  #endif
                  __Pyx_CppExn2PyErr();
                  #ifdef WITH_THREAD
                  __Pyx_PyGILState_Release(__pyx_gilstate_save);
                  #endif
                  __PYX_ERR(1, 441, __pyx_L1_error)
                }

                /* "dysgu/graph.pyx":440
 *                                         found_exact.push_back(node_name2)
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                     found2.push_back(node_name2)
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 */
              }
              __pyx_L24:;

              /* "dysgu/graph.pyx":428
 *                             sep2 = c_abs(vitem.second.pos2 - current_pos)
 * 
 *                             if sep < self.max_dist and sep2 < self.max_dist:             # <<<<<<<<<<<<<<
 *                                 if sep < 35:
 * 
 */
              goto __pyx_L21;
            }

            /* "dysgu/graph.pyx":442
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                     found2.push_back(node_name2)
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                 found2.push_back(node_name2)
 * 
 */
            __pyx_t_1 = (__pyx_f_5dysgu_13map_set_utils_span_position_distance(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2, __pyx_v_self->norm, __pyx_v_self->thresh, ((__pyx_t_5dysgu_13map_set_utils_ReadEnum_t)__pyx_v_read_enum), __pyx_v_self->paired_end, __pyx_v_length_from_cigar, __pyx_v_vitem.second.length_from_cigar, __pyx_v_trust_ins_len) != 0);
            if (__pyx_t_1) {

              /* "dysgu/graph.pyx":443
 *                                     found2.push_back(node_name2)
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                 found2.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                         elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 */
              try {
                __pyx_v_found2.push_back(__pyx_v_node_name2);
              } catch(...) {
                #ifdef WITH_THREAD
                PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                #endif
                __Pyx_CppExn2PyErr();
                #ifdef WITH_THREAD
                __Pyx_PyGILState_Release(__pyx_gilstate_save);
                #endif
                __PYX_ERR(1, 443, __pyx_L1_error)
              }

              /* "dysgu/graph.pyx":442
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                     found2.push_back(node_name2)
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                 found2.push_back(node_name2)
 * 
 */
            }
            __pyx_L21:;

            /* "dysgu/graph.pyx":423
 *                         #          )
 *                         #     echo(read_enum, vitem.second.read_enum, read_enum == INSERTION, vitem.second.read_enum == DELETION)
 *                         if current_chrom != chrom2 or is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2):             # <<<<<<<<<<<<<<
 * 
 *                             sep = c_abs(vitem.first - pos2)
 */
            goto __pyx_L18;
          }

          /* "dysgu/graph.pyx":445
 *                                 found2.push_back(node_name2)
 * 
 *                         elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                             found2.push_back(node_name2)
 * 
 */
          __pyx_t_1 = (__pyx_f_5dysgu_13map_set_utils_span_position_distance(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2, __pyx_v_self->norm, __pyx_v_self->thresh, ((__pyx_t_5dysgu_13map_set_utils_ReadEnum_t)__pyx_v_read_enum), __pyx_v_self->paired_end, __pyx_v_length_from_cigar, __pyx_v_vitem.second.length_from_cigar, __pyx_v_trust_ins_len) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":446
 * 
 *                         elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                             found2.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                     if sep >= self.max_dist:
 */
            try {
              __pyx_v_found2.push_back(__pyx_v_node_name2);
            } catch(...) {
              #ifdef WITH_THREAD
              PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
              #endif
              __Pyx_CppExn2PyErr();
              #ifdef WITH_THREAD
              __Pyx_PyGILState_Release(__pyx_gilstate_save);
              #endif
              __PYX_ERR(1, 446, __pyx_L1_error)
            }

            /* "dysgu/graph.pyx":445
 *                                 found2.push_back(node_name2)
 * 
 *                         elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                             found2.push_back(node_name2)
 * 
 */
          }
          __pyx_L18:;

          /* "dysgu/graph.pyx":417
 * 
 *                     node_name2 = vitem.second.node_name
 *                     if node_name2 != node_name:  # Can happen due to within-read events             # <<<<<<<<<<<<<<
 *                         # if node_name == 155:
 *                         #     echo("-->", node_name, node_name2, current_chrom == chrom2, current_pos, pos2, pos2 - current_pos, vitem.second.pos2 - vitem.first,
 */
        }

        /* "dysgu/graph.pyx":448
 *                             found2.push_back(node_name2)
 * 
 *                     if sep >= self.max_dist:             # <<<<<<<<<<<<<<
 *                         break  # No more to find
 * 
 */
        __pyx_t_1 = ((__pyx_v_sep >= __pyx_v_self->max_dist) != 0);
        if (__pyx_t_1) {

          /* "dysgu/graph.pyx":449
 * 
 *                     if sep >= self.max_dist:
 *                         break  # No more to find             # <<<<<<<<<<<<<<
 * 
 *                     preincrement(local_it)
 */
          goto __pyx_L11_break;

          /* "dysgu/graph.pyx":448
 *                             found2.push_back(node_name2)
 * 
 *                     if sep >= self.max_dist:             # <<<<<<<<<<<<<<
 *                         break  # No more to find
 * 
 */
        }

        /* "dysgu/graph.pyx":451
 *                         break  # No more to find
 * 
 *                     preincrement(local_it)             # <<<<<<<<<<<<<<
 *                     steps += 1
 *                     if local_it == forward_scope.end():
 */
        (void)((++__pyx_v_local_it));

        /* "dysgu/graph.pyx":452
 * 
 *                     preincrement(local_it)
 *                     steps += 1             # <<<<<<<<<<<<<<
 *                     if local_it == forward_scope.end():
 *                         break
 */
        __pyx_v_steps = (__pyx_v_steps + 1);

        /* "dysgu/graph.pyx":453
 *                     preincrement(local_it)
 *                     steps += 1
 *                     if local_it == forward_scope.end():             # <<<<<<<<<<<<<<
 *                         break
 * 
 */
        __pyx_t_1 = ((__pyx_v_local_it == __pyx_v_forward_scope->end()) != 0);
        if (__pyx_t_1) {

          /* "dysgu/graph.pyx":454
 *                     steps += 1
 *                     if local_it == forward_scope.end():
 *                         break             # <<<<<<<<<<<<<<
 * 
 *             if found_exact.empty():
 */
          goto __pyx_L11_break;

          /* "dysgu/graph.pyx":453
 *                     preincrement(local_it)
 *                     steps += 1
 *                     if local_it == forward_scope.end():             # <<<<<<<<<<<<<<
 *                         break
 * 
 */
        }
        __pyx_L10_continue:;
      }
      __pyx_L11_break:;

      /* "dysgu/graph.pyx":405
 * 
 *             steps = 0
 *             if local_it != forward_scope.end():             # <<<<<<<<<<<<<<
 *                 while steps < 6:
 *                     vitem = dereference(local_it)
 */
    }

    /* "dysgu/graph.pyx":456
 *                         break
 * 
 *             if found_exact.empty():             # <<<<<<<<<<<<<<
 *                 # Search lower
 *                 local_it = forward_scope.lower_bound(pos2)
 */
    __pyx_t_1 = (__pyx_v_found_exact.empty() != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":458
 *             if found_exact.empty():
 *                 # Search lower
 *                 local_it = forward_scope.lower_bound(pos2)             # <<<<<<<<<<<<<<
 *                 vitem = dereference(local_it)
 * 
 */
      __pyx_v_local_it = __pyx_v_forward_scope->lower_bound(__pyx_v_pos2);

      /* "dysgu/graph.pyx":459
 *                 # Search lower
 *                 local_it = forward_scope.lower_bound(pos2)
 *                 vitem = dereference(local_it)             # <<<<<<<<<<<<<<
 * 
 *                 if local_it != forward_scope.begin():
 */
      __pyx_v_vitem = (*__pyx_v_local_it);

      /* "dysgu/graph.pyx":461
 *                 vitem = dereference(local_it)
 * 
 *                 if local_it != forward_scope.begin():             # <<<<<<<<<<<<<<
 *                     predecrement(local_it)  # Move back one before staring search, otherwise same value is processed twice
 * 
 */
      __pyx_t_1 = ((__pyx_v_local_it != __pyx_v_forward_scope->begin()) != 0);
      if (__pyx_t_1) {

        /* "dysgu/graph.pyx":462
 * 
 *                 if local_it != forward_scope.begin():
 *                     predecrement(local_it)  # Move back one before staring search, otherwise same value is processed twice             # <<<<<<<<<<<<<<
 * 
 *                     steps = 0
 */
        (void)((--__pyx_v_local_it));

        /* "dysgu/graph.pyx":464
 *                     predecrement(local_it)  # Move back one before staring search, otherwise same value is processed twice
 * 
 *                     steps = 0             # <<<<<<<<<<<<<<
 *                     while steps < 6:
 *                         vitem = dereference(local_it)
 */
        __pyx_v_steps = 0;

        /* "dysgu/graph.pyx":465
 * 
 *                     steps = 0
 *                     while steps < 6:             # <<<<<<<<<<<<<<
 *                         vitem = dereference(local_it)
 *                         if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):
 */
        while (1) {
          __pyx_t_1 = ((__pyx_v_steps < 6) != 0);
          if (!__pyx_t_1) break;

          /* "dysgu/graph.pyx":466
 *                     steps = 0
 *                     while steps < 6:
 *                         vitem = dereference(local_it)             # <<<<<<<<<<<<<<
 *                         if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):
 *                             steps += 1
 */
          __pyx_v_vitem = (*__pyx_v_local_it);

          /* "dysgu/graph.pyx":467
 *                     while steps < 6:
 *                         vitem = dereference(local_it)
 *                         if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):             # <<<<<<<<<<<<<<
 *                             steps += 1
 *                             continue  # Dont connect insertions to deletions
 */
          __pyx_t_2 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_DELETION) != 0);
          if (!__pyx_t_2) {
            goto __pyx_L37_next_or;
          } else {
          }
          __pyx_t_2 = ((__pyx_v_vitem.second.read_enum == __pyx_e_5dysgu_5graph_INSERTION) != 0);
          if (!__pyx_t_2) {
          } else {
            __pyx_t_1 = __pyx_t_2;
            goto __pyx_L36_bool_binop_done;
          }
          __pyx_L37_next_or:;
          __pyx_t_2 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_INSERTION) != 0);
          if (__pyx_t_2) {
          } else {
            __pyx_t_1 = __pyx_t_2;
            goto __pyx_L36_bool_binop_done;
          }
          __pyx_t_2 = ((__pyx_v_vitem.second.read_enum == __pyx_e_5dysgu_5graph_DELETION) != 0);
          __pyx_t_1 = __pyx_t_2;
          __pyx_L36_bool_binop_done:;
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":468
 *                         vitem = dereference(local_it)
 *                         if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):
 *                             steps += 1             # <<<<<<<<<<<<<<
 *                             continue  # Dont connect insertions to deletions
 *                         node_name2 = vitem.second.node_name
 */
            __pyx_v_steps = (__pyx_v_steps + 1);

            /* "dysgu/graph.pyx":469
 *                         if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):
 *                             steps += 1
 *                             continue  # Dont connect insertions to deletions             # <<<<<<<<<<<<<<
 *                         node_name2 = vitem.second.node_name
 * 
 */
            goto __pyx_L33_continue;

            /* "dysgu/graph.pyx":467
 *                     while steps < 6:
 *                         vitem = dereference(local_it)
 *                         if (read_enum == DELETION and vitem.second.read_enum == INSERTION) or (read_enum == INSERTION and vitem.second.read_enum == DELETION):             # <<<<<<<<<<<<<<
 *                             steps += 1
 *                             continue  # Dont connect insertions to deletions
 */
          }

          /* "dysgu/graph.pyx":470
 *                             steps += 1
 *                             continue  # Dont connect insertions to deletions
 *                         node_name2 = vitem.second.node_name             # <<<<<<<<<<<<<<
 * 
 *                         if node_name2 != node_name:
 */
          __pyx_t_5 = __pyx_v_vitem.second.node_name;
          __pyx_v_node_name2 = __pyx_t_5;

          /* "dysgu/graph.pyx":472
 *                         node_name2 = vitem.second.node_name
 * 
 *                         if node_name2 != node_name:             # <<<<<<<<<<<<<<
 *                             # if node_name == 155:
 *                             #     echo("2", node_name, node_name2, read_enum) #, is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2), span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar))
 */
          __pyx_t_1 = ((__pyx_v_node_name2 != __pyx_v_node_name) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":477
 *                             # if node_name == 0:
 *                             #     echo(current_pos, pos2, vitem.first, vitem.second.pos2)
 *                             if current_chrom != chrom2 or is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2):             # <<<<<<<<<<<<<<
 *                                 sep = c_abs(vitem.first - pos2)
 *                                 sep2 = c_abs(vitem.second.pos2 - current_pos)
 */
            __pyx_t_2 = ((__pyx_v_current_chrom != __pyx_v_chrom2) != 0);
            if (!__pyx_t_2) {
            } else {
              __pyx_t_1 = __pyx_t_2;
              goto __pyx_L42_bool_binop_done;
            }
            __pyx_t_2 = (__pyx_f_5dysgu_13map_set_utils_is_reciprocal_overlapping(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2) != 0);
            __pyx_t_1 = __pyx_t_2;
            __pyx_L42_bool_binop_done:;
            if (__pyx_t_1) {

              /* "dysgu/graph.pyx":478
 *                             #     echo(current_pos, pos2, vitem.first, vitem.second.pos2)
 *                             if current_chrom != chrom2 or is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2):
 *                                 sep = c_abs(vitem.first - pos2)             # <<<<<<<<<<<<<<
 *                                 sep2 = c_abs(vitem.second.pos2 - current_pos)
 * 
 */
              __pyx_v_sep = abs((__pyx_v_vitem.first - __pyx_v_pos2));

              /* "dysgu/graph.pyx":479
 *                             if current_chrom != chrom2 or is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2):
 *                                 sep = c_abs(vitem.first - pos2)
 *                                 sep2 = c_abs(vitem.second.pos2 - current_pos)             # <<<<<<<<<<<<<<
 * 
 *                                 if sep < self.max_dist and vitem.second.chrom2 == chrom2 and \
 */
              __pyx_v_sep2 = abs((__pyx_v_vitem.second.pos2 - __pyx_v_current_pos));

              /* "dysgu/graph.pyx":481
 *                                 sep2 = c_abs(vitem.second.pos2 - current_pos)
 * 
 *                                 if sep < self.max_dist and vitem.second.chrom2 == chrom2 and \             # <<<<<<<<<<<<<<
 *                                         sep2 < self.max_dist:
 *                                     if sep < 35:
 */
              __pyx_t_2 = ((__pyx_v_sep < __pyx_v_self->max_dist) != 0);
              if (__pyx_t_2) {
              } else {
                __pyx_t_1 = __pyx_t_2;
                goto __pyx_L45_bool_binop_done;
              }
              __pyx_t_2 = ((__pyx_v_vitem.second.chrom2 == __pyx_v_chrom2) != 0);
              if (__pyx_t_2) {
              } else {
                __pyx_t_1 = __pyx_t_2;
                goto __pyx_L45_bool_binop_done;
              }

              /* "dysgu/graph.pyx":482
 * 
 *                                 if sep < self.max_dist and vitem.second.chrom2 == chrom2 and \
 *                                         sep2 < self.max_dist:             # <<<<<<<<<<<<<<
 *                                     if sep < 35:
 *                                         if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 */
              __pyx_t_2 = ((__pyx_v_sep2 < __pyx_v_self->max_dist) != 0);
              __pyx_t_1 = __pyx_t_2;
              __pyx_L45_bool_binop_done:;

              /* "dysgu/graph.pyx":481
 *                                 sep2 = c_abs(vitem.second.pos2 - current_pos)
 * 
 *                                 if sep < self.max_dist and vitem.second.chrom2 == chrom2 and \             # <<<<<<<<<<<<<<
 *                                         sep2 < self.max_dist:
 *                                     if sep < 35:
 */
              if (__pyx_t_1) {

                /* "dysgu/graph.pyx":483
 *                                 if sep < self.max_dist and vitem.second.chrom2 == chrom2 and \
 *                                         sep2 < self.max_dist:
 *                                     if sep < 35:             # <<<<<<<<<<<<<<
 *                                         if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 *                                             max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 */
                __pyx_t_1 = ((__pyx_v_sep < 35) != 0);
                if (__pyx_t_1) {

                  /* "dysgu/graph.pyx":484
 *                                         sep2 < self.max_dist:
 *                                     if sep < 35:
 *                                         if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:             # <<<<<<<<<<<<<<
 *                                             max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 *                                             span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 */
                  __pyx_t_2 = ((__pyx_v_length_from_cigar > 0) != 0);
                  if (__pyx_t_2) {
                  } else {
                    __pyx_t_1 = __pyx_t_2;
                    goto __pyx_L50_bool_binop_done;
                  }
                  __pyx_t_2 = ((__pyx_v_vitem.second.length_from_cigar > 0) != 0);
                  __pyx_t_1 = __pyx_t_2;
                  __pyx_L50_bool_binop_done:;
                  if (__pyx_t_1) {

                    /* "dysgu/graph.pyx":485
 *                                     if sep < 35:
 *                                         if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 *                                             max_span = max(length_from_cigar, vitem.second.length_from_cigar)             # <<<<<<<<<<<<<<
 *                                             span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 *                                             # echo("hi2", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 */
                    __pyx_t_5 = __pyx_v_vitem.second.length_from_cigar;
                    __pyx_t_3 = __pyx_v_length_from_cigar;
                    if (((__pyx_t_5 > __pyx_t_3) != 0)) {
                      __pyx_t_4 = __pyx_t_5;
                    } else {
                      __pyx_t_4 = __pyx_t_3;
                    }
                    __pyx_v_max_span = __pyx_t_4;

                    /* "dysgu/graph.pyx":486
 *                                         if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 *                                             max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 *                                             span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span             # <<<<<<<<<<<<<<
 *                                             # echo("hi2", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                             if span_distance < 0.8:
 */
                    __pyx_t_6 = ((float)abs((__pyx_v_length_from_cigar - __pyx_v_vitem.second.length_from_cigar)));
                    if (unlikely(__pyx_v_max_span == 0)) {
                      #ifdef WITH_THREAD
                      PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                      #endif
                      PyErr_SetString(PyExc_ZeroDivisionError, "float division");
                      #ifdef WITH_THREAD
                      __Pyx_PyGILState_Release(__pyx_gilstate_save);
                      #endif
                      __PYX_ERR(1, 486, __pyx_L1_error)
                    }
                    __pyx_v_span_distance = (__pyx_t_6 / __pyx_v_max_span);

                    /* "dysgu/graph.pyx":488
 *                                             span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 *                                             # echo("hi2", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                             if span_distance < 0.8:             # <<<<<<<<<<<<<<
 *                                                 found_exact.push_back(node_name2)
 *                                         else:
 */
                    __pyx_t_1 = ((__pyx_v_span_distance < 0.8) != 0);
                    if (__pyx_t_1) {

                      /* "dysgu/graph.pyx":489
 *                                             # echo("hi2", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                             if span_distance < 0.8:
 *                                                 found_exact.push_back(node_name2)             # <<<<<<<<<<<<<<
 *                                         else:
 *                                             found_exact.push_back(node_name2)
 */
                      try {
                        __pyx_v_found_exact.push_back(__pyx_v_node_name2);
                      } catch(...) {
                        #ifdef WITH_THREAD
                        PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                        #endif
                        __Pyx_CppExn2PyErr();
                        #ifdef WITH_THREAD
                        __Pyx_PyGILState_Release(__pyx_gilstate_save);
                        #endif
                        __PYX_ERR(1, 489, __pyx_L1_error)
                      }

                      /* "dysgu/graph.pyx":488
 *                                             span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 *                                             # echo("hi2", node_name2, (length_from_cigar, vitem.second.length_from_cigar), span_distance, self.thresh)
 *                                             if span_distance < 0.8:             # <<<<<<<<<<<<<<
 *                                                 found_exact.push_back(node_name2)
 *                                         else:
 */
                    }

                    /* "dysgu/graph.pyx":484
 *                                         sep2 < self.max_dist:
 *                                     if sep < 35:
 *                                         if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:             # <<<<<<<<<<<<<<
 *                                             max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 *                                             span_distance = <float>c_abs(length_from_cigar - vitem.second.length_from_cigar) / max_span
 */
                    goto __pyx_L49;
                  }

                  /* "dysgu/graph.pyx":491
 *                                                 found_exact.push_back(node_name2)
 *                                         else:
 *                                             found_exact.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                                         found_exact.push_back(node_name2)
 */
                  /*else*/ {
                    try {
                      __pyx_v_found_exact.push_back(__pyx_v_node_name2);
                    } catch(...) {
                      #ifdef WITH_THREAD
                      PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                      #endif
                      __Pyx_CppExn2PyErr();
                      #ifdef WITH_THREAD
                      __Pyx_PyGILState_Release(__pyx_gilstate_save);
                      #endif
                      __PYX_ERR(1, 491, __pyx_L1_error)
                    }
                  }
                  __pyx_L49:;

                  /* "dysgu/graph.pyx":493
 *                                             found_exact.push_back(node_name2)
 * 
 *                                         found_exact.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                                     elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 */
                  try {
                    __pyx_v_found_exact.push_back(__pyx_v_node_name2);
                  } catch(...) {
                    #ifdef WITH_THREAD
                    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                    #endif
                    __Pyx_CppExn2PyErr();
                    #ifdef WITH_THREAD
                    __Pyx_PyGILState_Release(__pyx_gilstate_save);
                    #endif
                    __PYX_ERR(1, 493, __pyx_L1_error)
                  }

                  /* "dysgu/graph.pyx":483
 *                                 if sep < self.max_dist and vitem.second.chrom2 == chrom2 and \
 *                                         sep2 < self.max_dist:
 *                                     if sep < 35:             # <<<<<<<<<<<<<<
 *                                         if length_from_cigar > 0 and vitem.second.length_from_cigar > 0:
 *                                             max_span = max(length_from_cigar, vitem.second.length_from_cigar)
 */
                  goto __pyx_L48;
                }

                /* "dysgu/graph.pyx":495
 *                                         found_exact.push_back(node_name2)
 * 
 *                                     elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                         found2.push_back(node_name2)
 * 
 */
                __pyx_t_1 = (__pyx_f_5dysgu_13map_set_utils_span_position_distance(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2, __pyx_v_self->norm, __pyx_v_self->thresh, ((__pyx_t_5dysgu_13map_set_utils_ReadEnum_t)__pyx_v_read_enum), __pyx_v_self->paired_end, __pyx_v_length_from_cigar, __pyx_v_vitem.second.length_from_cigar, __pyx_v_trust_ins_len) != 0);
                if (__pyx_t_1) {

                  /* "dysgu/graph.pyx":496
 * 
 *                                     elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                         found2.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 */
                  try {
                    __pyx_v_found2.push_back(__pyx_v_node_name2);
                  } catch(...) {
                    #ifdef WITH_THREAD
                    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                    #endif
                    __Pyx_CppExn2PyErr();
                    #ifdef WITH_THREAD
                    __Pyx_PyGILState_Release(__pyx_gilstate_save);
                    #endif
                    __PYX_ERR(1, 496, __pyx_L1_error)
                  }

                  /* "dysgu/graph.pyx":495
 *                                         found_exact.push_back(node_name2)
 * 
 *                                     elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                         found2.push_back(node_name2)
 * 
 */
                }
                __pyx_L48:;

                /* "dysgu/graph.pyx":481
 *                                 sep2 = c_abs(vitem.second.pos2 - current_pos)
 * 
 *                                 if sep < self.max_dist and vitem.second.chrom2 == chrom2 and \             # <<<<<<<<<<<<<<
 *                                         sep2 < self.max_dist:
 *                                     if sep < 35:
 */
                goto __pyx_L44;
              }

              /* "dysgu/graph.pyx":498
 *                                         found2.push_back(node_name2)
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                     found2.push_back(node_name2)
 * 
 */
              __pyx_t_1 = (__pyx_f_5dysgu_13map_set_utils_span_position_distance(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2, __pyx_v_self->norm, __pyx_v_self->thresh, ((__pyx_t_5dysgu_13map_set_utils_ReadEnum_t)__pyx_v_read_enum), __pyx_v_self->paired_end, __pyx_v_length_from_cigar, __pyx_v_vitem.second.length_from_cigar, __pyx_v_trust_ins_len) != 0);
              if (__pyx_t_1) {

                /* "dysgu/graph.pyx":499
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                     found2.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 */
                try {
                  __pyx_v_found2.push_back(__pyx_v_node_name2);
                } catch(...) {
                  #ifdef WITH_THREAD
                  PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                  #endif
                  __Pyx_CppExn2PyErr();
                  #ifdef WITH_THREAD
                  __Pyx_PyGILState_Release(__pyx_gilstate_save);
                  #endif
                  __PYX_ERR(1, 499, __pyx_L1_error)
                }

                /* "dysgu/graph.pyx":498
 *                                         found2.push_back(node_name2)
 * 
 *                                 elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                     found2.push_back(node_name2)
 * 
 */
              }
              __pyx_L44:;

              /* "dysgu/graph.pyx":477
 *                             # if node_name == 0:
 *                             #     echo(current_pos, pos2, vitem.first, vitem.second.pos2)
 *                             if current_chrom != chrom2 or is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2):             # <<<<<<<<<<<<<<
 *                                 sep = c_abs(vitem.first - pos2)
 *                                 sep2 = c_abs(vitem.second.pos2 - current_pos)
 */
              goto __pyx_L41;
            }

            /* "dysgu/graph.pyx":501
 *                                     found2.push_back(node_name2)
 * 
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                 found2.push_back(node_name2)
 * 
 */
            __pyx_t_1 = (__pyx_f_5dysgu_13map_set_utils_span_position_distance(__pyx_v_current_pos, __pyx_v_pos2, __pyx_v_vitem.first, __pyx_v_vitem.second.pos2, __pyx_v_self->norm, __pyx_v_self->thresh, ((__pyx_t_5dysgu_13map_set_utils_ReadEnum_t)__pyx_v_read_enum), __pyx_v_self->paired_end, __pyx_v_length_from_cigar, __pyx_v_vitem.second.length_from_cigar, __pyx_v_trust_ins_len) != 0);
            if (__pyx_t_1) {

              /* "dysgu/graph.pyx":502
 * 
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):
 *                                 found2.push_back(node_name2)             # <<<<<<<<<<<<<<
 * 
 *                         if local_it == forward_scope.begin() or sep >= self.max_dist:
 */
              try {
                __pyx_v_found2.push_back(__pyx_v_node_name2);
              } catch(...) {
                #ifdef WITH_THREAD
                PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
                #endif
                __Pyx_CppExn2PyErr();
                #ifdef WITH_THREAD
                __Pyx_PyGILState_Release(__pyx_gilstate_save);
                #endif
                __PYX_ERR(1, 502, __pyx_L1_error)
              }

              /* "dysgu/graph.pyx":501
 *                                     found2.push_back(node_name2)
 * 
 *                             elif span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar, trust_ins_len):             # <<<<<<<<<<<<<<
 *                                 found2.push_back(node_name2)
 * 
 */
            }
            __pyx_L41:;

            /* "dysgu/graph.pyx":472
 *                         node_name2 = vitem.second.node_name
 * 
 *                         if node_name2 != node_name:             # <<<<<<<<<<<<<<
 *                             # if node_name == 155:
 *                             #     echo("2", node_name, node_name2, read_enum) #, is_reciprocal_overlapping(current_pos, pos2, vitem.first, vitem.second.pos2), span_position_distance(current_pos, pos2, vitem.first, vitem.second.pos2, self.norm, self.thresh, read_enum, self.paired_end, length_from_cigar, vitem.second.length_from_cigar))
 */
          }

          /* "dysgu/graph.pyx":504
 *                                 found2.push_back(node_name2)
 * 
 *                         if local_it == forward_scope.begin() or sep >= self.max_dist:             # <<<<<<<<<<<<<<
 *                             break
 *                         predecrement(local_it)
 */
          __pyx_t_2 = ((__pyx_v_local_it == __pyx_v_forward_scope->begin()) != 0);
          if (!__pyx_t_2) {
          } else {
            __pyx_t_1 = __pyx_t_2;
            goto __pyx_L54_bool_binop_done;
          }
          __pyx_t_2 = ((__pyx_v_sep >= __pyx_v_self->max_dist) != 0);
          __pyx_t_1 = __pyx_t_2;
          __pyx_L54_bool_binop_done:;
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":505
 * 
 *                         if local_it == forward_scope.begin() or sep >= self.max_dist:
 *                             break             # <<<<<<<<<<<<<<
 *                         predecrement(local_it)
 *                         steps += 1
 */
            goto __pyx_L34_break;

            /* "dysgu/graph.pyx":504
 *                                 found2.push_back(node_name2)
 * 
 *                         if local_it == forward_scope.begin() or sep >= self.max_dist:             # <<<<<<<<<<<<<<
 *                             break
 *                         predecrement(local_it)
 */
          }

          /* "dysgu/graph.pyx":506
 *                         if local_it == forward_scope.begin() or sep >= self.max_dist:
 *                             break
 *                         predecrement(local_it)             # <<<<<<<<<<<<<<
 *                         steps += 1
 * 
 */
          (void)((--__pyx_v_local_it));

          /* "dysgu/graph.pyx":507
 *                             break
 *                         predecrement(local_it)
 *                         steps += 1             # <<<<<<<<<<<<<<
 * 
 *         if not found_exact.empty():
 */
          __pyx_v_steps = (__pyx_v_steps + 1);
          __pyx_L33_continue:;
        }
        __pyx_L34_break:;

        /* "dysgu/graph.pyx":461
 *                 vitem = dereference(local_it)
 * 
 *                 if local_it != forward_scope.begin():             # <<<<<<<<<<<<<<
 *                     predecrement(local_it)  # Move back one before staring search, otherwise same value is processed twice
 * 
 */
      }

      /* "dysgu/graph.pyx":456
 *                         break
 * 
 *             if found_exact.empty():             # <<<<<<<<<<<<<<
 *                 # Search lower
 *                 local_it = forward_scope.lower_bound(pos2)
 */
    }

    /* "dysgu/graph.pyx":387
 *             self.empty_scopes()
 * 
 *         if not self.loci.empty():             # <<<<<<<<<<<<<<
 * 
 *             # Erase items out of range in forward scope
 */
  }

  /* "dysgu/graph.pyx":509
 *                         steps += 1
 * 
 *         if not found_exact.empty():             # <<<<<<<<<<<<<<
 *             return found_exact
 *         else:
 */
  __pyx_t_1 = ((!(__pyx_v_found_exact.empty() != 0)) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":510
 * 
 *         if not found_exact.empty():
 *             return found_exact             # <<<<<<<<<<<<<<
 *         else:
 *             return found2
 */
    __pyx_r = __pyx_v_found_exact;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":509
 *                         steps += 1
 * 
 *         if not found_exact.empty():             # <<<<<<<<<<<<<<
 *             return found_exact
 *         else:
 */
  }

  /* "dysgu/graph.pyx":512
 *             return found_exact
 *         else:
 *             return found2             # <<<<<<<<<<<<<<
 * 
 *     cdef void add_item(self, int node_name, int current_chrom, int current_pos, int chrom2, int pos2,
 */
  /*else*/ {
    __pyx_r = __pyx_v_found2;
    goto __pyx_L0;
  }

  /* "dysgu/graph.pyx":356
 *         self.loci.clear()
 * 
 *     cdef vector[int] find_other_nodes(self, int node_name, int current_chrom, int current_pos, int chrom2, int pos2,             # <<<<<<<<<<<<<<
 *                                       ReadEnum_t read_enum, int length_from_cigar, bint trust_ins_len) nogil:
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_WriteUnraisable("dysgu.graph.PairedEndScoper.find_other_nodes", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 1);
  __Pyx_pretend_to_initialize(&__pyx_r);
  __pyx_L0:;
  return __pyx_r;
}

/* "dysgu/graph.pyx":514
 *             return found2
 * 
 *     cdef void add_item(self, int node_name, int current_chrom, int current_pos, int chrom2, int pos2,             # <<<<<<<<<<<<<<
 *                        ReadEnum_t read_enum, int length_from_cigar): # nogil:
 * 
 */

static void __pyx_f_5dysgu_5graph_15PairedEndScoper_add_item(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, int __pyx_v_node_name, int __pyx_v_current_chrom, int __pyx_v_current_pos, int __pyx_v_chrom2, int __pyx_v_pos2, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum, int __pyx_v_length_from_cigar) {
  std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal>  *__pyx_v_forward_scope;
  std::pair<int,struct __pyx_t_5dysgu_5graph_LocalVal>  __pyx_v_pp;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("add_item", 0);

  /* "dysgu/graph.pyx":520
 *         # first break point drops from the local scope, the forward scope break will not connect with other
 *         # events that are added later. This is a fix for long read deletions mainly
 *         if chrom2 == -1:             # <<<<<<<<<<<<<<
 *             return  # No chrom2 was set, single-end?
 * 
 */
  __pyx_t_1 = ((__pyx_v_chrom2 == -1L) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":521
 *         # events that are added later. This is a fix for long read deletions mainly
 *         if chrom2 == -1:
 *             return  # No chrom2 was set, single-end?             # <<<<<<<<<<<<<<
 * 
 *         cdef cpp_map[int, LocalVal]* forward_scope
 */
    goto __pyx_L0;

    /* "dysgu/graph.pyx":520
 *         # first break point drops from the local scope, the forward scope break will not connect with other
 *         # events that are added later. This is a fix for long read deletions mainly
 *         if chrom2 == -1:             # <<<<<<<<<<<<<<
 *             return  # No chrom2 was set, single-end?
 * 
 */
  }

  /* "dysgu/graph.pyx":524
 * 
 *         cdef cpp_map[int, LocalVal]* forward_scope
 *         if chrom2 == 10000000:             # <<<<<<<<<<<<<<
 *             forward_scope = &self.chrom_scope.back()
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_chrom2 == 0x989680) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":525
 *         cdef cpp_map[int, LocalVal]* forward_scope
 *         if chrom2 == 10000000:
 *             forward_scope = &self.chrom_scope.back()             # <<<<<<<<<<<<<<
 *         else:
 *             forward_scope = &self.chrom_scope[chrom2]
 */
    __pyx_v_forward_scope = (&__pyx_v_self->chrom_scope.back());

    /* "dysgu/graph.pyx":524
 * 
 *         cdef cpp_map[int, LocalVal]* forward_scope
 *         if chrom2 == 10000000:             # <<<<<<<<<<<<<<
 *             forward_scope = &self.chrom_scope.back()
 *         else:
 */
    goto __pyx_L4;
  }

  /* "dysgu/graph.pyx":527
 *             forward_scope = &self.chrom_scope.back()
 *         else:
 *             forward_scope = &self.chrom_scope[chrom2]             # <<<<<<<<<<<<<<
 * 
 *         # Add to local scope
 */
  /*else*/ {
    __pyx_v_forward_scope = (&(__pyx_v_self->chrom_scope[__pyx_v_chrom2]));
  }
  __pyx_L4:;

  /* "dysgu/graph.pyx":532
 *         cdef cpp_pair[int, LocalVal] pp
 * 
 *         pp.first = current_pos             # <<<<<<<<<<<<<<
 *         pp.second = make_local_val(chrom2, pos2, node_name, read_enum, length_from_cigar)
 *         self.loci.insert(pp)
 */
  __pyx_v_pp.first = __pyx_v_current_pos;

  /* "dysgu/graph.pyx":533
 * 
 *         pp.first = current_pos
 *         pp.second = make_local_val(chrom2, pos2, node_name, read_enum, length_from_cigar)             # <<<<<<<<<<<<<<
 *         self.loci.insert(pp)
 * 
 */
  __pyx_v_pp.second = __pyx_f_5dysgu_5graph_make_local_val(__pyx_v_chrom2, __pyx_v_pos2, __pyx_v_node_name, __pyx_v_read_enum, __pyx_v_length_from_cigar);

  /* "dysgu/graph.pyx":534
 *         pp.first = current_pos
 *         pp.second = make_local_val(chrom2, pos2, node_name, read_enum, length_from_cigar)
 *         self.loci.insert(pp)             # <<<<<<<<<<<<<<
 * 
 *         if read_enum == DELETION:
 */
  try {
    __pyx_v_self->loci.insert(__pyx_v_pp);
  } catch(...) {
    __Pyx_CppExn2PyErr();
    __PYX_ERR(1, 534, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":536
 *         self.loci.insert(pp)
 * 
 *         if read_enum == DELETION:             # <<<<<<<<<<<<<<
 *             forward_scope.insert(pp)
 * 
 */
  __pyx_t_1 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_DELETION) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":537
 * 
 *         if read_enum == DELETION:
 *             forward_scope.insert(pp)             # <<<<<<<<<<<<<<
 * 
 *         # Add to forward scope
 */
    try {
      __pyx_v_forward_scope->insert(__pyx_v_pp);
    } catch(...) {
      __Pyx_CppExn2PyErr();
      __PYX_ERR(1, 537, __pyx_L1_error)
    }

    /* "dysgu/graph.pyx":536
 *         self.loci.insert(pp)
 * 
 *         if read_enum == DELETION:             # <<<<<<<<<<<<<<
 *             forward_scope.insert(pp)
 * 
 */
  }

  /* "dysgu/graph.pyx":540
 * 
 *         # Add to forward scope
 *         pp.first = pos2             # <<<<<<<<<<<<<<
 *         pp.second = make_local_val(current_chrom, current_pos, node_name, read_enum, length_from_cigar)
 *         forward_scope.insert(pp)
 */
  __pyx_v_pp.first = __pyx_v_pos2;

  /* "dysgu/graph.pyx":541
 *         # Add to forward scope
 *         pp.first = pos2
 *         pp.second = make_local_val(current_chrom, current_pos, node_name, read_enum, length_from_cigar)             # <<<<<<<<<<<<<<
 *         forward_scope.insert(pp)
 * 
 */
  __pyx_v_pp.second = __pyx_f_5dysgu_5graph_make_local_val(__pyx_v_current_chrom, __pyx_v_current_pos, __pyx_v_node_name, __pyx_v_read_enum, __pyx_v_length_from_cigar);

  /* "dysgu/graph.pyx":542
 *         pp.first = pos2
 *         pp.second = make_local_val(current_chrom, current_pos, node_name, read_enum, length_from_cigar)
 *         forward_scope.insert(pp)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  try {
    __pyx_v_forward_scope->insert(__pyx_v_pp);
  } catch(...) {
    __Pyx_CppExn2PyErr();
    __PYX_ERR(1, 542, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":514
 *             return found2
 * 
 *     cdef void add_item(self, int node_name, int current_chrom, int current_pos, int chrom2, int pos2,             # <<<<<<<<<<<<<<
 *                        ReadEnum_t read_enum, int length_from_cigar): # nogil:
 * 
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_WriteUnraisable("dysgu.graph.PairedEndScoper.add_item", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_15PairedEndScoper_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_15PairedEndScoper_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_15PairedEndScoper_2__reduce_cython__(((struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_15PairedEndScoper_2__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__3, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 2, __pyx_L1_error)

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.PairedEndScoper.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_15PairedEndScoper_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_15PairedEndScoper_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_15PairedEndScoper_4__setstate_cython__(((struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_15PairedEndScoper_4__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_PairedEndScoper *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":4
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__4, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 4, __pyx_L1_error)

  /* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.PairedEndScoper.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":547
 * cdef class TemplateEdges:
 *     cdef public unordered_map[string, vector[int]] templates_s  # robin map was buggy for iterating
 *     def __init__(self):             # <<<<<<<<<<<<<<
 *         pass
 * 
 */

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_13TemplateEdges_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_pw_5dysgu_5graph_13TemplateEdges_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
  if (unlikely(PyTuple_GET_SIZE(__pyx_args) > 0)) {
    __Pyx_RaiseArgtupleInvalid("__init__", 1, 0, 0, PyTuple_GET_SIZE(__pyx_args)); return -1;}
  if (unlikely(__pyx_kwds) && unlikely(PyDict_Size(__pyx_kwds) > 0) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__init__", 0))) return -1;
  __pyx_r = __pyx_pf_5dysgu_5graph_13TemplateEdges___init__(((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_13TemplateEdges___init__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__", 0);

  /* function exit code */
  __pyx_r = 0;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":550
 *         pass
 * 
 *     cdef void add(self, str template_name, int flag, int node, int query_start):             # <<<<<<<<<<<<<<
 *         cdef vector[int] val
 *         cdef bytes key = bytes(template_name, encoding="utf8")
 */

static void __pyx_f_5dysgu_5graph_13TemplateEdges_add(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self, PyObject *__pyx_v_template_name, int __pyx_v_flag, int __pyx_v_node, int __pyx_v_query_start) {
  std::vector<int>  __pyx_v_val;
  PyObject *__pyx_v_key = 0;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  std::string __pyx_t_4;
  std::string __pyx_t_5;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("add", 0);

  /* "dysgu/graph.pyx":552
 *     cdef void add(self, str template_name, int flag, int node, int query_start):
 *         cdef vector[int] val
 *         cdef bytes key = bytes(template_name, encoding="utf8")             # <<<<<<<<<<<<<<
 *         # More efficient way of doing this?
 *         val.push_back(query_start)
 */
  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 552, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_v_template_name);
  __Pyx_GIVEREF(__pyx_v_template_name);
  PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v_template_name);
  __pyx_t_2 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 552, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_t_2, __pyx_n_s_encoding, __pyx_n_u_utf8) < 0) __PYX_ERR(1, 552, __pyx_L1_error)
  __pyx_t_3 = __Pyx_PyObject_Call(((PyObject *)(&PyBytes_Type)), __pyx_t_1, __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 552, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_v_key = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":554
 *         cdef bytes key = bytes(template_name, encoding="utf8")
 *         # More efficient way of doing this?
 *         val.push_back(query_start)             # <<<<<<<<<<<<<<
 *         val.push_back(node)
 *         val.push_back(flag)
 */
  try {
    __pyx_v_val.push_back(__pyx_v_query_start);
  } catch(...) {
    __Pyx_CppExn2PyErr();
    __PYX_ERR(1, 554, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":555
 *         # More efficient way of doing this?
 *         val.push_back(query_start)
 *         val.push_back(node)             # <<<<<<<<<<<<<<
 *         val.push_back(flag)
 *         self.templates_s[key].insert(self.templates_s[key].end(), val.begin(), val.end())
 */
  try {
    __pyx_v_val.push_back(__pyx_v_node);
  } catch(...) {
    __Pyx_CppExn2PyErr();
    __PYX_ERR(1, 555, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":556
 *         val.push_back(query_start)
 *         val.push_back(node)
 *         val.push_back(flag)             # <<<<<<<<<<<<<<
 *         self.templates_s[key].insert(self.templates_s[key].end(), val.begin(), val.end())
 * 
 */
  try {
    __pyx_v_val.push_back(__pyx_v_flag);
  } catch(...) {
    __Pyx_CppExn2PyErr();
    __PYX_ERR(1, 556, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":557
 *         val.push_back(node)
 *         val.push_back(flag)
 *         self.templates_s[key].insert(self.templates_s[key].end(), val.begin(), val.end())             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_4 = __pyx_convert_string_from_py_std__in_string(__pyx_v_key); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 557, __pyx_L1_error)
  __pyx_t_5 = __pyx_convert_string_from_py_std__in_string(__pyx_v_key); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 557, __pyx_L1_error)
  try {
    (__pyx_v_self->templates_s[__pyx_t_4]).insert((__pyx_v_self->templates_s[__pyx_t_5]).end(), __pyx_v_val.begin(), __pyx_v_val.end());
  } catch(...) {
    __Pyx_CppExn2PyErr();
    __PYX_ERR(1, 557, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":550
 *         pass
 * 
 *     cdef void add(self, str template_name, int flag, int node, int query_start):             # <<<<<<<<<<<<<<
 *         cdef vector[int] val
 *         cdef bytes key = bytes(template_name, encoding="utf8")
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_WriteUnraisable("dysgu.graph.TemplateEdges.add", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_key);
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":546
 * 
 * cdef class TemplateEdges:
 *     cdef public unordered_map[string, vector[int]] templates_s  # robin map was buggy for iterating             # <<<<<<<<<<<<<<
 *     def __init__(self):
 *         pass
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_13TemplateEdges_11templates_s_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_13TemplateEdges_11templates_s_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_13TemplateEdges_11templates_s___get__(((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_13TemplateEdges_11templates_s___get__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___(__pyx_v_self->templates_s); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 546, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.TemplateEdges.templates_s.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_13TemplateEdges_11templates_s_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_13TemplateEdges_11templates_s_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_13TemplateEdges_11templates_s_2__set__(((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_13TemplateEdges_11templates_s_2__set__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  std::unordered_map<std::string,std::vector<int> >  __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___(__pyx_v_value); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 546, __pyx_L1_error)
  __pyx_v_self->templates_s = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.TemplateEdges.templates_s.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     cdef tuple state
 *     cdef object _dict
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_13TemplateEdges_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_13TemplateEdges_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_13TemplateEdges_2__reduce_cython__(((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_13TemplateEdges_2__reduce_cython__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self) {
  PyObject *__pyx_v_state = 0;
  PyObject *__pyx_v__dict = 0;
  int __pyx_v_use_setstate;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":5
 *     cdef object _dict
 *     cdef bint use_setstate
 *     state = (self.templates_s,)             # <<<<<<<<<<<<<<
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:
 */
  __pyx_t_1 = __pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___(__pyx_v_self->templates_s); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
  __pyx_t_1 = 0;
  __pyx_v_state = ((PyObject*)__pyx_t_2);
  __pyx_t_2 = 0;

  /* "(tree fragment)":6
 *     cdef bint use_setstate
 *     state = (self.templates_s,)
 *     _dict = getattr(self, '__dict__', None)             # <<<<<<<<<<<<<<
 *     if _dict is not None:
 *         state += (_dict,)
 */
  __pyx_t_2 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_v__dict = __pyx_t_2;
  __pyx_t_2 = 0;

  /* "(tree fragment)":7
 *     state = (self.templates_s,)
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:             # <<<<<<<<<<<<<<
 *         state += (_dict,)
 *         use_setstate = True
 */
  __pyx_t_3 = (__pyx_v__dict != Py_None);
  __pyx_t_4 = (__pyx_t_3 != 0);
  if (__pyx_t_4) {

    /* "(tree fragment)":8
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:
 *         state += (_dict,)             # <<<<<<<<<<<<<<
 *         use_setstate = True
 *     else:
 */
    __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 8, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_INCREF(__pyx_v__dict);
    __Pyx_GIVEREF(__pyx_v__dict);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_v__dict);
    __pyx_t_1 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 8, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_1));
    __pyx_t_1 = 0;

    /* "(tree fragment)":9
 *     if _dict is not None:
 *         state += (_dict,)
 *         use_setstate = True             # <<<<<<<<<<<<<<
 *     else:
 *         use_setstate = False
 */
    __pyx_v_use_setstate = 1;

    /* "(tree fragment)":7
 *     state = (self.templates_s,)
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:             # <<<<<<<<<<<<<<
 *         state += (_dict,)
 *         use_setstate = True
 */
    goto __pyx_L3;
  }

  /* "(tree fragment)":11
 *         use_setstate = True
 *     else:
 *         use_setstate = False             # <<<<<<<<<<<<<<
 *     if use_setstate:
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, None), state
 */
  /*else*/ {
    __pyx_v_use_setstate = 0;
  }
  __pyx_L3:;

  /* "(tree fragment)":12
 *     else:
 *         use_setstate = False
 *     if use_setstate:             # <<<<<<<<<<<<<<
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, None), state
 *     else:
 */
  __pyx_t_4 = (__pyx_v_use_setstate != 0);
  if (__pyx_t_4) {

    /* "(tree fragment)":13
 *         use_setstate = False
 *     if use_setstate:
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, None), state             # <<<<<<<<<<<<<<
 *     else:
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, state)
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_pyx_unpickle_TemplateEdges); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_2 = PyTuple_New(3); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_INCREF(__pyx_int_78226420);
    __Pyx_GIVEREF(__pyx_int_78226420);
    PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_int_78226420);
    __Pyx_INCREF(Py_None);
    __Pyx_GIVEREF(Py_None);
    PyTuple_SET_ITEM(__pyx_t_2, 2, Py_None);
    __pyx_t_5 = PyTuple_New(3); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_1);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_2);
    __Pyx_INCREF(__pyx_v_state);
    __Pyx_GIVEREF(__pyx_v_state);
    PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_v_state);
    __pyx_t_1 = 0;
    __pyx_t_2 = 0;
    __pyx_r = __pyx_t_5;
    __pyx_t_5 = 0;
    goto __pyx_L0;

    /* "(tree fragment)":12
 *     else:
 *         use_setstate = False
 *     if use_setstate:             # <<<<<<<<<<<<<<
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, None), state
 *     else:
 */
  }

  /* "(tree fragment)":15
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, None), state
 *     else:
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, state)             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     __pyx_unpickle_TemplateEdges__set_state(self, __pyx_state)
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_pyx_unpickle_TemplateEdges); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_2 = PyTuple_New(3); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_INCREF(__pyx_int_78226420);
    __Pyx_GIVEREF(__pyx_int_78226420);
    PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_int_78226420);
    __Pyx_INCREF(__pyx_v_state);
    __Pyx_GIVEREF(__pyx_v_state);
    PyTuple_SET_ITEM(__pyx_t_2, 2, __pyx_v_state);
    __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_2);
    __pyx_t_5 = 0;
    __pyx_t_2 = 0;
    __pyx_r = __pyx_t_1;
    __pyx_t_1 = 0;
    goto __pyx_L0;
  }

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     cdef tuple state
 *     cdef object _dict
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("dysgu.graph.TemplateEdges.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_state);
  __Pyx_XDECREF(__pyx_v__dict);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":16
 *     else:
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, state)
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_unpickle_TemplateEdges__set_state(self, __pyx_state)
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_13TemplateEdges_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_13TemplateEdges_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_13TemplateEdges_4__setstate_cython__(((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_13TemplateEdges_4__setstate_cython__(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":17
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, state)
 * def __setstate_cython__(self, __pyx_state):
 *     __pyx_unpickle_TemplateEdges__set_state(self, __pyx_state)             # <<<<<<<<<<<<<<
 */
  if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(0, 17, __pyx_L1_error)
  __pyx_t_1 = __pyx_f_5dysgu_5graph___pyx_unpickle_TemplateEdges__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "(tree fragment)":16
 *     else:
 *         return __pyx_unpickle_TemplateEdges, (type(self), 0x4a9a3f4, state)
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_unpickle_TemplateEdges__set_state(self, __pyx_state)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.TemplateEdges.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":560
 * 
 * 
 * cdef void add_template_edges(G, TemplateEdges template_edges):             # <<<<<<<<<<<<<<
 *     # this function joins up template reads (read 1, read 2, plus any supplementary)
 *     cdef int ii, u_start, v_start, u, v, uflag, vflag
 */

static void __pyx_f_5dysgu_5graph_add_template_edges(PyObject *__pyx_v_G, struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v_template_edges) {
  int __pyx_v_ii;
  CYTHON_UNUSED int __pyx_v_u_start;
  CYTHON_UNUSED int __pyx_v_v_start;
  int __pyx_v_u;
  int __pyx_v_v;
  int __pyx_v_uflag;
  CYTHON_UNUSED int __pyx_v_vflag;
  std::unordered_map<std::string,std::vector<int> > ::iterator __pyx_v_it;
  std::vector<int>  __pyx_v_arr;
  PyObject *__pyx_v_read1_aligns = NULL;
  PyObject *__pyx_v_read2_aligns = NULL;
  PyObject *__pyx_v_primary1 = NULL;
  PyObject *__pyx_v_primary2 = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  std::vector<int>  __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  std::vector<int> ::size_type __pyx_t_4;
  std::vector<int> ::size_type __pyx_t_5;
  int __pyx_t_6;
  PyObject *__pyx_t_7 = NULL;
  int __pyx_t_8;
  Py_ssize_t __pyx_t_9;
  int __pyx_t_10;
  Py_ssize_t __pyx_t_11;
  PyObject *__pyx_t_12 = NULL;
  PyObject *__pyx_t_13 = NULL;
  PyObject *__pyx_t_14 = NULL;
  PyObject *(*__pyx_t_15)(PyObject *);
  int __pyx_t_16;
  int __pyx_t_17;
  int __pyx_t_18;
  long __pyx_t_19;
  PyObject *__pyx_t_20 = NULL;
  int __pyx_t_21;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("add_template_edges", 0);

  /* "dysgu/graph.pyx":565
 * 
 *     # normally 2 reads for paired end, or >2 if supplementary reads
 *     cdef unordered_map[string, vector[int]].iterator it = template_edges.templates_s.begin()             # <<<<<<<<<<<<<<
 *     # cdef string qname
 *     cdef vector[int] arr
 */
  __pyx_v_it = __pyx_v_template_edges->templates_s.begin();

  /* "dysgu/graph.pyx":568
 *     # cdef string qname
 *     cdef vector[int] arr
 *     while it != template_edges.templates_s.end():             # <<<<<<<<<<<<<<
 * 
 *         # qname = str(dereference(it).first)
 */
  while (1) {
    __pyx_t_1 = ((__pyx_v_it != __pyx_v_template_edges->templates_s.end()) != 0);
    if (!__pyx_t_1) break;

    /* "dysgu/graph.pyx":572
 *         # qname = str(dereference(it).first)
 * 
 *         arr = dereference(it).second             # <<<<<<<<<<<<<<
 *         # Array values are query start, node-name, flag
 *         # if qname == "D00360:18:H8VC6ADXX:1:1210:7039:44052":
 */
    __pyx_t_2 = (*__pyx_v_it).second;
    __pyx_v_arr = __pyx_t_2;

    /* "dysgu/graph.pyx":576
 *         # if qname == "D00360:18:H8VC6ADXX:1:1210:7039:44052":
 *         #     echo(arr)
 *         postincrement(it)             # <<<<<<<<<<<<<<
 * 
 *         read1_aligns = []
 */
    (void)((__pyx_v_it++));

    /* "dysgu/graph.pyx":578
 *         postincrement(it)
 * 
 *         read1_aligns = []             # <<<<<<<<<<<<<<
 *         read2_aligns = []
 *         for ii in range(0, arr.size(), 3):
 */
    __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 578, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_XDECREF_SET(__pyx_v_read1_aligns, ((PyObject*)__pyx_t_3));
    __pyx_t_3 = 0;

    /* "dysgu/graph.pyx":579
 * 
 *         read1_aligns = []
 *         read2_aligns = []             # <<<<<<<<<<<<<<
 *         for ii in range(0, arr.size(), 3):
 *             if arr[ii + 2] & 64:  # first in pair
 */
    __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 579, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_XDECREF_SET(__pyx_v_read2_aligns, ((PyObject*)__pyx_t_3));
    __pyx_t_3 = 0;

    /* "dysgu/graph.pyx":580
 *         read1_aligns = []
 *         read2_aligns = []
 *         for ii in range(0, arr.size(), 3):             # <<<<<<<<<<<<<<
 *             if arr[ii + 2] & 64:  # first in pair
 *                 read1_aligns.append(arr[ii:ii + 3])
 */
    __pyx_t_4 = __pyx_v_arr.size();
    __pyx_t_5 = __pyx_t_4;
    for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=3) {
      __pyx_v_ii = __pyx_t_6;

      /* "dysgu/graph.pyx":581
 *         read2_aligns = []
 *         for ii in range(0, arr.size(), 3):
 *             if arr[ii + 2] & 64:  # first in pair             # <<<<<<<<<<<<<<
 *                 read1_aligns.append(arr[ii:ii + 3])
 *             else:
 */
      __pyx_t_1 = (((__pyx_v_arr[(__pyx_v_ii + 2)]) & 64) != 0);
      if (__pyx_t_1) {

        /* "dysgu/graph.pyx":582
 *         for ii in range(0, arr.size(), 3):
 *             if arr[ii + 2] & 64:  # first in pair
 *                 read1_aligns.append(arr[ii:ii + 3])             # <<<<<<<<<<<<<<
 *             else:
 *                 read2_aligns.append(arr[ii:ii + 3])
 */
        __pyx_t_3 = __pyx_convert_vector_to_py_int(__pyx_v_arr); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 582, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        __pyx_t_7 = __Pyx_PyObject_GetSlice(__pyx_t_3, __pyx_v_ii, (__pyx_v_ii + 3), NULL, NULL, NULL, 1, 1, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 582, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
        __pyx_t_8 = __Pyx_PyList_Append(__pyx_v_read1_aligns, __pyx_t_7); if (unlikely(__pyx_t_8 == ((int)-1))) __PYX_ERR(1, 582, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

        /* "dysgu/graph.pyx":581
 *         read2_aligns = []
 *         for ii in range(0, arr.size(), 3):
 *             if arr[ii + 2] & 64:  # first in pair             # <<<<<<<<<<<<<<
 *                 read1_aligns.append(arr[ii:ii + 3])
 *             else:
 */
        goto __pyx_L7;
      }

      /* "dysgu/graph.pyx":584
 *                 read1_aligns.append(arr[ii:ii + 3])
 *             else:
 *                 read2_aligns.append(arr[ii:ii + 3])             # <<<<<<<<<<<<<<
 * 
 *         primary1 = None
 */
      /*else*/ {
        __pyx_t_7 = __pyx_convert_vector_to_py_int(__pyx_v_arr); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 584, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __pyx_t_3 = __Pyx_PyObject_GetSlice(__pyx_t_7, __pyx_v_ii, (__pyx_v_ii + 3), NULL, NULL, NULL, 1, 1, 1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 584, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __pyx_t_8 = __Pyx_PyList_Append(__pyx_v_read2_aligns, __pyx_t_3); if (unlikely(__pyx_t_8 == ((int)-1))) __PYX_ERR(1, 584, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      }
      __pyx_L7:;
    }

    /* "dysgu/graph.pyx":586
 *                 read2_aligns.append(arr[ii:ii + 3])
 * 
 *         primary1 = None             # <<<<<<<<<<<<<<
 *         primary2 = None
 *         if len(read1_aligns) > 0:
 */
    __Pyx_INCREF(Py_None);
    __Pyx_XDECREF_SET(__pyx_v_primary1, Py_None);

    /* "dysgu/graph.pyx":587
 * 
 *         primary1 = None
 *         primary2 = None             # <<<<<<<<<<<<<<
 *         if len(read1_aligns) > 0:
 *             if len(read1_aligns) == 1:
 */
    __Pyx_INCREF(Py_None);
    __Pyx_XDECREF_SET(__pyx_v_primary2, Py_None);

    /* "dysgu/graph.pyx":588
 *         primary1 = None
 *         primary2 = None
 *         if len(read1_aligns) > 0:             # <<<<<<<<<<<<<<
 *             if len(read1_aligns) == 1:
 *                 if not read1_aligns[0][2] & 2304:  # Is primary
 */
    __pyx_t_9 = PyList_GET_SIZE(__pyx_v_read1_aligns); if (unlikely(__pyx_t_9 == ((Py_ssize_t)-1))) __PYX_ERR(1, 588, __pyx_L1_error)
    __pyx_t_1 = ((__pyx_t_9 > 0) != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":589
 *         primary2 = None
 *         if len(read1_aligns) > 0:
 *             if len(read1_aligns) == 1:             # <<<<<<<<<<<<<<
 *                 if not read1_aligns[0][2] & 2304:  # Is primary
 *                     primary1 = read1_aligns[0][1]
 */
      __pyx_t_9 = PyList_GET_SIZE(__pyx_v_read1_aligns); if (unlikely(__pyx_t_9 == ((Py_ssize_t)-1))) __PYX_ERR(1, 589, __pyx_L1_error)
      __pyx_t_1 = ((__pyx_t_9 == 1) != 0);
      if (__pyx_t_1) {

        /* "dysgu/graph.pyx":590
 *         if len(read1_aligns) > 0:
 *             if len(read1_aligns) == 1:
 *                 if not read1_aligns[0][2] & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                     primary1 = read1_aligns[0][1]
 *             else:
 */
        __pyx_t_3 = __Pyx_GetItemInt(PyList_GET_ITEM(__pyx_v_read1_aligns, 0), 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 590, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        __pyx_t_7 = __Pyx_PyInt_AndObjC(__pyx_t_3, __pyx_int_2304, 0x900, 0, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 590, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
        __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(1, 590, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __pyx_t_10 = ((!__pyx_t_1) != 0);
        if (__pyx_t_10) {

          /* "dysgu/graph.pyx":591
 *             if len(read1_aligns) == 1:
 *                 if not read1_aligns[0][2] & 2304:  # Is primary
 *                     primary1 = read1_aligns[0][1]             # <<<<<<<<<<<<<<
 *             else:
 *                 if len(read1_aligns) > 2:
 */
          __pyx_t_7 = __Pyx_GetItemInt(PyList_GET_ITEM(__pyx_v_read1_aligns, 0), 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 591, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __Pyx_DECREF_SET(__pyx_v_primary1, __pyx_t_7);
          __pyx_t_7 = 0;

          /* "dysgu/graph.pyx":590
 *         if len(read1_aligns) > 0:
 *             if len(read1_aligns) == 1:
 *                 if not read1_aligns[0][2] & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                     primary1 = read1_aligns[0][1]
 *             else:
 */
        }

        /* "dysgu/graph.pyx":589
 *         primary2 = None
 *         if len(read1_aligns) > 0:
 *             if len(read1_aligns) == 1:             # <<<<<<<<<<<<<<
 *                 if not read1_aligns[0][2] & 2304:  # Is primary
 *                     primary1 = read1_aligns[0][1]
 */
        goto __pyx_L9;
      }

      /* "dysgu/graph.pyx":593
 *                     primary1 = read1_aligns[0][1]
 *             else:
 *                 if len(read1_aligns) > 2:             # <<<<<<<<<<<<<<
 *                     read1_aligns = sorted(read1_aligns)
 *                 # Add edge between alignments that are neighbors on the query sequence, or between primary alignments
 */
      /*else*/ {
        __pyx_t_9 = PyList_GET_SIZE(__pyx_v_read1_aligns); if (unlikely(__pyx_t_9 == ((Py_ssize_t)-1))) __PYX_ERR(1, 593, __pyx_L1_error)
        __pyx_t_10 = ((__pyx_t_9 > 2) != 0);
        if (__pyx_t_10) {

          /* "dysgu/graph.pyx":594
 *             else:
 *                 if len(read1_aligns) > 2:
 *                     read1_aligns = sorted(read1_aligns)             # <<<<<<<<<<<<<<
 *                 # Add edge between alignments that are neighbors on the query sequence, or between primary alignments
 *                 for ii in range(len(read1_aligns) - 1):
 */
          __pyx_t_3 = PySequence_List(__pyx_v_read1_aligns); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 594, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          __pyx_t_7 = ((PyObject*)__pyx_t_3);
          __pyx_t_3 = 0;
          __pyx_t_8 = PyList_Sort(__pyx_t_7); if (unlikely(__pyx_t_8 == ((int)-1))) __PYX_ERR(1, 594, __pyx_L1_error)
          __Pyx_DECREF_SET(__pyx_v_read1_aligns, ((PyObject*)__pyx_t_7));
          __pyx_t_7 = 0;

          /* "dysgu/graph.pyx":593
 *                     primary1 = read1_aligns[0][1]
 *             else:
 *                 if len(read1_aligns) > 2:             # <<<<<<<<<<<<<<
 *                     read1_aligns = sorted(read1_aligns)
 *                 # Add edge between alignments that are neighbors on the query sequence, or between primary alignments
 */
        }

        /* "dysgu/graph.pyx":596
 *                     read1_aligns = sorted(read1_aligns)
 *                 # Add edge between alignments that are neighbors on the query sequence, or between primary alignments
 *                 for ii in range(len(read1_aligns) - 1):             # <<<<<<<<<<<<<<
 *                     u_start, u, uflag = read1_aligns[ii]
 *                     if not uflag & 2304:  # Is primary
 */
        if (unlikely(__pyx_v_read1_aligns == Py_None)) {
          PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
          __PYX_ERR(1, 596, __pyx_L1_error)
        }
        __pyx_t_9 = PyList_GET_SIZE(__pyx_v_read1_aligns); if (unlikely(__pyx_t_9 == ((Py_ssize_t)-1))) __PYX_ERR(1, 596, __pyx_L1_error)
        __pyx_t_11 = (__pyx_t_9 - 1);
        __pyx_t_9 = __pyx_t_11;
        for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_9; __pyx_t_6+=1) {
          __pyx_v_ii = __pyx_t_6;

          /* "dysgu/graph.pyx":597
 *                 # Add edge between alignments that are neighbors on the query sequence, or between primary alignments
 *                 for ii in range(len(read1_aligns) - 1):
 *                     u_start, u, uflag = read1_aligns[ii]             # <<<<<<<<<<<<<<
 *                     if not uflag & 2304:  # Is primary
 *                         primary1 = u
 */
          if (unlikely(__pyx_v_read1_aligns == Py_None)) {
            PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
            __PYX_ERR(1, 597, __pyx_L1_error)
          }
          __pyx_t_7 = __Pyx_GetItemInt_List(__pyx_v_read1_aligns, __pyx_v_ii, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 597, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          if ((likely(PyTuple_CheckExact(__pyx_t_7))) || (PyList_CheckExact(__pyx_t_7))) {
            PyObject* sequence = __pyx_t_7;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 3)) {
              if (size > 3) __Pyx_RaiseTooManyValuesError(3);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 597, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_3 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_12 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_13 = PyTuple_GET_ITEM(sequence, 2); 
            } else {
              __pyx_t_3 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_12 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_13 = PyList_GET_ITEM(sequence, 2); 
            }
            __Pyx_INCREF(__pyx_t_3);
            __Pyx_INCREF(__pyx_t_12);
            __Pyx_INCREF(__pyx_t_13);
            #else
            __pyx_t_3 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 597, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __pyx_t_12 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 597, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_13 = PySequence_ITEM(sequence, 2); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 597, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            #endif
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          } else {
            Py_ssize_t index = -1;
            __pyx_t_14 = PyObject_GetIter(__pyx_t_7); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 597, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_14);
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
            __pyx_t_15 = Py_TYPE(__pyx_t_14)->tp_iternext;
            index = 0; __pyx_t_3 = __pyx_t_15(__pyx_t_14); if (unlikely(!__pyx_t_3)) goto __pyx_L14_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_3);
            index = 1; __pyx_t_12 = __pyx_t_15(__pyx_t_14); if (unlikely(!__pyx_t_12)) goto __pyx_L14_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_12);
            index = 2; __pyx_t_13 = __pyx_t_15(__pyx_t_14); if (unlikely(!__pyx_t_13)) goto __pyx_L14_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_13);
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_15(__pyx_t_14), 3) < 0) __PYX_ERR(1, 597, __pyx_L1_error)
            __pyx_t_15 = NULL;
            __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
            goto __pyx_L15_unpacking_done;
            __pyx_L14_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
            __pyx_t_15 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 597, __pyx_L1_error)
            __pyx_L15_unpacking_done:;
          }
          __pyx_t_16 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_16 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 597, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __pyx_t_17 = __Pyx_PyInt_As_int(__pyx_t_12); if (unlikely((__pyx_t_17 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 597, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
          __pyx_t_18 = __Pyx_PyInt_As_int(__pyx_t_13); if (unlikely((__pyx_t_18 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 597, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __pyx_v_u_start = __pyx_t_16;
          __pyx_v_u = __pyx_t_17;
          __pyx_v_uflag = __pyx_t_18;

          /* "dysgu/graph.pyx":598
 *                 for ii in range(len(read1_aligns) - 1):
 *                     u_start, u, uflag = read1_aligns[ii]
 *                     if not uflag & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                         primary1 = u
 *                     v_start, v, vflag = read1_aligns[ii + 1]
 */
          __pyx_t_10 = ((!((__pyx_v_uflag & 0x900) != 0)) != 0);
          if (__pyx_t_10) {

            /* "dysgu/graph.pyx":599
 *                     u_start, u, uflag = read1_aligns[ii]
 *                     if not uflag & 2304:  # Is primary
 *                         primary1 = u             # <<<<<<<<<<<<<<
 *                     v_start, v, vflag = read1_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):
 */
            __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 599, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_7);
            __Pyx_DECREF_SET(__pyx_v_primary1, __pyx_t_7);
            __pyx_t_7 = 0;

            /* "dysgu/graph.pyx":598
 *                 for ii in range(len(read1_aligns) - 1):
 *                     u_start, u, uflag = read1_aligns[ii]
 *                     if not uflag & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                         primary1 = u
 *                     v_start, v, vflag = read1_aligns[ii + 1]
 */
          }

          /* "dysgu/graph.pyx":600
 *                     if not uflag & 2304:  # Is primary
 *                         primary1 = u
 *                     v_start, v, vflag = read1_aligns[ii + 1]             # <<<<<<<<<<<<<<
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)
 */
          if (unlikely(__pyx_v_read1_aligns == Py_None)) {
            PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
            __PYX_ERR(1, 600, __pyx_L1_error)
          }
          __pyx_t_19 = (__pyx_v_ii + 1);
          __pyx_t_7 = __Pyx_GetItemInt_List(__pyx_v_read1_aligns, __pyx_t_19, long, 1, __Pyx_PyInt_From_long, 1, 1, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 600, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          if ((likely(PyTuple_CheckExact(__pyx_t_7))) || (PyList_CheckExact(__pyx_t_7))) {
            PyObject* sequence = __pyx_t_7;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 3)) {
              if (size > 3) __Pyx_RaiseTooManyValuesError(3);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 600, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_13 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_12 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_3 = PyTuple_GET_ITEM(sequence, 2); 
            } else {
              __pyx_t_13 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_12 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_3 = PyList_GET_ITEM(sequence, 2); 
            }
            __Pyx_INCREF(__pyx_t_13);
            __Pyx_INCREF(__pyx_t_12);
            __Pyx_INCREF(__pyx_t_3);
            #else
            __pyx_t_13 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 600, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __pyx_t_12 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 600, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_3 = PySequence_ITEM(sequence, 2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 600, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            #endif
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          } else {
            Py_ssize_t index = -1;
            __pyx_t_14 = PyObject_GetIter(__pyx_t_7); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 600, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_14);
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
            __pyx_t_15 = Py_TYPE(__pyx_t_14)->tp_iternext;
            index = 0; __pyx_t_13 = __pyx_t_15(__pyx_t_14); if (unlikely(!__pyx_t_13)) goto __pyx_L17_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_13);
            index = 1; __pyx_t_12 = __pyx_t_15(__pyx_t_14); if (unlikely(!__pyx_t_12)) goto __pyx_L17_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_12);
            index = 2; __pyx_t_3 = __pyx_t_15(__pyx_t_14); if (unlikely(!__pyx_t_3)) goto __pyx_L17_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_3);
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_15(__pyx_t_14), 3) < 0) __PYX_ERR(1, 600, __pyx_L1_error)
            __pyx_t_15 = NULL;
            __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
            goto __pyx_L18_unpacking_done;
            __pyx_L17_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
            __pyx_t_15 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 600, __pyx_L1_error)
            __pyx_L18_unpacking_done:;
          }
          __pyx_t_18 = __Pyx_PyInt_As_int(__pyx_t_13); if (unlikely((__pyx_t_18 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 600, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __pyx_t_17 = __Pyx_PyInt_As_int(__pyx_t_12); if (unlikely((__pyx_t_17 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 600, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
          __pyx_t_16 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_16 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 600, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __pyx_v_v_start = __pyx_t_18;
          __pyx_v_v = __pyx_t_17;
          __pyx_v_vflag = __pyx_t_16;

          /* "dysgu/graph.pyx":601
 *                         primary1 = u
 *                     v_start, v, vflag = read1_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):             # <<<<<<<<<<<<<<
 *                         G.addEdge(u, v, w=1)
 *                 if primary1 is None:  # Check last in list
 */
          __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_hasEdge); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 601, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 601, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_12);
          __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 601, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_13);
          __pyx_t_14 = NULL;
          __pyx_t_16 = 0;
          if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_3))) {
            __pyx_t_14 = PyMethod_GET_SELF(__pyx_t_3);
            if (likely(__pyx_t_14)) {
              PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
              __Pyx_INCREF(__pyx_t_14);
              __Pyx_INCREF(function);
              __Pyx_DECREF_SET(__pyx_t_3, function);
              __pyx_t_16 = 1;
            }
          }
          #if CYTHON_FAST_PYCALL
          if (PyFunction_Check(__pyx_t_3)) {
            PyObject *__pyx_temp[3] = {__pyx_t_14, __pyx_t_12, __pyx_t_13};
            __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_3, __pyx_temp+1-__pyx_t_16, 2+__pyx_t_16); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 601, __pyx_L1_error)
            __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
            __Pyx_GOTREF(__pyx_t_7);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          } else
          #endif
          #if CYTHON_FAST_PYCCALL
          if (__Pyx_PyFastCFunction_Check(__pyx_t_3)) {
            PyObject *__pyx_temp[3] = {__pyx_t_14, __pyx_t_12, __pyx_t_13};
            __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_3, __pyx_temp+1-__pyx_t_16, 2+__pyx_t_16); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 601, __pyx_L1_error)
            __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
            __Pyx_GOTREF(__pyx_t_7);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          } else
          #endif
          {
            __pyx_t_20 = PyTuple_New(2+__pyx_t_16); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 601, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            if (__pyx_t_14) {
              __Pyx_GIVEREF(__pyx_t_14); PyTuple_SET_ITEM(__pyx_t_20, 0, __pyx_t_14); __pyx_t_14 = NULL;
            }
            __Pyx_GIVEREF(__pyx_t_12);
            PyTuple_SET_ITEM(__pyx_t_20, 0+__pyx_t_16, __pyx_t_12);
            __Pyx_GIVEREF(__pyx_t_13);
            PyTuple_SET_ITEM(__pyx_t_20, 1+__pyx_t_16, __pyx_t_13);
            __pyx_t_12 = 0;
            __pyx_t_13 = 0;
            __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_20, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 601, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_7);
            __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
          }
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __pyx_t_10 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(1, 601, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_t_1 = ((!__pyx_t_10) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":602
 *                     v_start, v, vflag = read1_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)             # <<<<<<<<<<<<<<
 *                 if primary1 is None:  # Check last in list
 *                     if not read1_aligns[-1][2] & 2304:
 */
            __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addEdge); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 602, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_7);
            __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 602, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __pyx_t_20 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 602, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            __pyx_t_13 = PyTuple_New(2); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 602, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __Pyx_GIVEREF(__pyx_t_3);
            PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_t_3);
            __Pyx_GIVEREF(__pyx_t_20);
            PyTuple_SET_ITEM(__pyx_t_13, 1, __pyx_t_20);
            __pyx_t_3 = 0;
            __pyx_t_20 = 0;
            __pyx_t_20 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 602, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            if (PyDict_SetItem(__pyx_t_20, __pyx_n_s_w, __pyx_int_1) < 0) __PYX_ERR(1, 602, __pyx_L1_error)
            __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_13, __pyx_t_20); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 602, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
            __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

            /* "dysgu/graph.pyx":601
 *                         primary1 = u
 *                     v_start, v, vflag = read1_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):             # <<<<<<<<<<<<<<
 *                         G.addEdge(u, v, w=1)
 *                 if primary1 is None:  # Check last in list
 */
          }
        }

        /* "dysgu/graph.pyx":603
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)
 *                 if primary1 is None:  # Check last in list             # <<<<<<<<<<<<<<
 *                     if not read1_aligns[-1][2] & 2304:
 *                         primary1 = read1_aligns[-1][1]
 */
        __pyx_t_1 = (__pyx_v_primary1 == Py_None);
        __pyx_t_10 = (__pyx_t_1 != 0);
        if (__pyx_t_10) {

          /* "dysgu/graph.pyx":604
 *                         G.addEdge(u, v, w=1)
 *                 if primary1 is None:  # Check last in list
 *                     if not read1_aligns[-1][2] & 2304:             # <<<<<<<<<<<<<<
 *                         primary1 = read1_aligns[-1][1]
 * 
 */
          if (unlikely(__pyx_v_read1_aligns == Py_None)) {
            PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
            __PYX_ERR(1, 604, __pyx_L1_error)
          }
          __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_read1_aligns, -1L, long, 1, __Pyx_PyInt_From_long, 1, 1, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 604, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          __pyx_t_20 = __Pyx_GetItemInt(__pyx_t_3, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 604, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_20);
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __pyx_t_3 = __Pyx_PyInt_AndObjC(__pyx_t_20, __pyx_int_2304, 0x900, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 604, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
          __pyx_t_10 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(1, 604, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __pyx_t_1 = ((!__pyx_t_10) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":605
 *                 if primary1 is None:  # Check last in list
 *                     if not read1_aligns[-1][2] & 2304:
 *                         primary1 = read1_aligns[-1][1]             # <<<<<<<<<<<<<<
 * 
 *         if len(read2_aligns) > 0:
 */
            if (unlikely(__pyx_v_read1_aligns == Py_None)) {
              PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
              __PYX_ERR(1, 605, __pyx_L1_error)
            }
            __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_read1_aligns, -1L, long, 1, __Pyx_PyInt_From_long, 1, 1, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 605, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __pyx_t_20 = __Pyx_GetItemInt(__pyx_t_3, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 605, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
            __Pyx_DECREF_SET(__pyx_v_primary1, __pyx_t_20);
            __pyx_t_20 = 0;

            /* "dysgu/graph.pyx":604
 *                         G.addEdge(u, v, w=1)
 *                 if primary1 is None:  # Check last in list
 *                     if not read1_aligns[-1][2] & 2304:             # <<<<<<<<<<<<<<
 *                         primary1 = read1_aligns[-1][1]
 * 
 */
          }

          /* "dysgu/graph.pyx":603
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)
 *                 if primary1 is None:  # Check last in list             # <<<<<<<<<<<<<<
 *                     if not read1_aligns[-1][2] & 2304:
 *                         primary1 = read1_aligns[-1][1]
 */
        }
      }
      __pyx_L9:;

      /* "dysgu/graph.pyx":588
 *         primary1 = None
 *         primary2 = None
 *         if len(read1_aligns) > 0:             # <<<<<<<<<<<<<<
 *             if len(read1_aligns) == 1:
 *                 if not read1_aligns[0][2] & 2304:  # Is primary
 */
    }

    /* "dysgu/graph.pyx":607
 *                         primary1 = read1_aligns[-1][1]
 * 
 *         if len(read2_aligns) > 0:             # <<<<<<<<<<<<<<
 *             if len(read2_aligns) == 1:
 *                 if not read2_aligns[0][2] & 2304:  # Is primary
 */
    __pyx_t_11 = PyList_GET_SIZE(__pyx_v_read2_aligns); if (unlikely(__pyx_t_11 == ((Py_ssize_t)-1))) __PYX_ERR(1, 607, __pyx_L1_error)
    __pyx_t_1 = ((__pyx_t_11 > 0) != 0);
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":608
 * 
 *         if len(read2_aligns) > 0:
 *             if len(read2_aligns) == 1:             # <<<<<<<<<<<<<<
 *                 if not read2_aligns[0][2] & 2304:  # Is primary
 *                     primary2 = read2_aligns[0][1]
 */
      __pyx_t_11 = PyList_GET_SIZE(__pyx_v_read2_aligns); if (unlikely(__pyx_t_11 == ((Py_ssize_t)-1))) __PYX_ERR(1, 608, __pyx_L1_error)
      __pyx_t_1 = ((__pyx_t_11 == 1) != 0);
      if (__pyx_t_1) {

        /* "dysgu/graph.pyx":609
 *         if len(read2_aligns) > 0:
 *             if len(read2_aligns) == 1:
 *                 if not read2_aligns[0][2] & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                     primary2 = read2_aligns[0][1]
 *             else:
 */
        __pyx_t_20 = __Pyx_GetItemInt(PyList_GET_ITEM(__pyx_v_read2_aligns, 0), 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 609, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_20);
        __pyx_t_3 = __Pyx_PyInt_AndObjC(__pyx_t_20, __pyx_int_2304, 0x900, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 609, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
        __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(1, 609, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
        __pyx_t_10 = ((!__pyx_t_1) != 0);
        if (__pyx_t_10) {

          /* "dysgu/graph.pyx":610
 *             if len(read2_aligns) == 1:
 *                 if not read2_aligns[0][2] & 2304:  # Is primary
 *                     primary2 = read2_aligns[0][1]             # <<<<<<<<<<<<<<
 *             else:
 *                 if len(read2_aligns) > 2:
 */
          __pyx_t_3 = __Pyx_GetItemInt(PyList_GET_ITEM(__pyx_v_read2_aligns, 0), 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 610, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          __Pyx_DECREF_SET(__pyx_v_primary2, __pyx_t_3);
          __pyx_t_3 = 0;

          /* "dysgu/graph.pyx":609
 *         if len(read2_aligns) > 0:
 *             if len(read2_aligns) == 1:
 *                 if not read2_aligns[0][2] & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                     primary2 = read2_aligns[0][1]
 *             else:
 */
        }

        /* "dysgu/graph.pyx":608
 * 
 *         if len(read2_aligns) > 0:
 *             if len(read2_aligns) == 1:             # <<<<<<<<<<<<<<
 *                 if not read2_aligns[0][2] & 2304:  # Is primary
 *                     primary2 = read2_aligns[0][1]
 */
        goto __pyx_L23;
      }

      /* "dysgu/graph.pyx":612
 *                     primary2 = read2_aligns[0][1]
 *             else:
 *                 if len(read2_aligns) > 2:             # <<<<<<<<<<<<<<
 *                     read2_aligns = sorted(read2_aligns)  # sorted by query pos
 *                 for ii in range(len(read2_aligns) - 1):
 */
      /*else*/ {
        __pyx_t_11 = PyList_GET_SIZE(__pyx_v_read2_aligns); if (unlikely(__pyx_t_11 == ((Py_ssize_t)-1))) __PYX_ERR(1, 612, __pyx_L1_error)
        __pyx_t_10 = ((__pyx_t_11 > 2) != 0);
        if (__pyx_t_10) {

          /* "dysgu/graph.pyx":613
 *             else:
 *                 if len(read2_aligns) > 2:
 *                     read2_aligns = sorted(read2_aligns)  # sorted by query pos             # <<<<<<<<<<<<<<
 *                 for ii in range(len(read2_aligns) - 1):
 *                     u_start, u, uflag = read2_aligns[ii]
 */
          __pyx_t_20 = PySequence_List(__pyx_v_read2_aligns); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 613, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_20);
          __pyx_t_3 = ((PyObject*)__pyx_t_20);
          __pyx_t_20 = 0;
          __pyx_t_8 = PyList_Sort(__pyx_t_3); if (unlikely(__pyx_t_8 == ((int)-1))) __PYX_ERR(1, 613, __pyx_L1_error)
          __Pyx_DECREF_SET(__pyx_v_read2_aligns, ((PyObject*)__pyx_t_3));
          __pyx_t_3 = 0;

          /* "dysgu/graph.pyx":612
 *                     primary2 = read2_aligns[0][1]
 *             else:
 *                 if len(read2_aligns) > 2:             # <<<<<<<<<<<<<<
 *                     read2_aligns = sorted(read2_aligns)  # sorted by query pos
 *                 for ii in range(len(read2_aligns) - 1):
 */
        }

        /* "dysgu/graph.pyx":614
 *                 if len(read2_aligns) > 2:
 *                     read2_aligns = sorted(read2_aligns)  # sorted by query pos
 *                 for ii in range(len(read2_aligns) - 1):             # <<<<<<<<<<<<<<
 *                     u_start, u, uflag = read2_aligns[ii]
 *                     if not uflag & 2304:  # Is primary
 */
        if (unlikely(__pyx_v_read2_aligns == Py_None)) {
          PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
          __PYX_ERR(1, 614, __pyx_L1_error)
        }
        __pyx_t_11 = PyList_GET_SIZE(__pyx_v_read2_aligns); if (unlikely(__pyx_t_11 == ((Py_ssize_t)-1))) __PYX_ERR(1, 614, __pyx_L1_error)
        __pyx_t_9 = (__pyx_t_11 - 1);
        __pyx_t_11 = __pyx_t_9;
        for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_11; __pyx_t_6+=1) {
          __pyx_v_ii = __pyx_t_6;

          /* "dysgu/graph.pyx":615
 *                     read2_aligns = sorted(read2_aligns)  # sorted by query pos
 *                 for ii in range(len(read2_aligns) - 1):
 *                     u_start, u, uflag = read2_aligns[ii]             # <<<<<<<<<<<<<<
 *                     if not uflag & 2304:  # Is primary
 *                         primary2 = u
 */
          if (unlikely(__pyx_v_read2_aligns == Py_None)) {
            PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
            __PYX_ERR(1, 615, __pyx_L1_error)
          }
          __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_read2_aligns, __pyx_v_ii, int, 1, __Pyx_PyInt_From_int, 1, 1, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 615, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          if ((likely(PyTuple_CheckExact(__pyx_t_3))) || (PyList_CheckExact(__pyx_t_3))) {
            PyObject* sequence = __pyx_t_3;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 3)) {
              if (size > 3) __Pyx_RaiseTooManyValuesError(3);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 615, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_20 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_13 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_7 = PyTuple_GET_ITEM(sequence, 2); 
            } else {
              __pyx_t_20 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_13 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_7 = PyList_GET_ITEM(sequence, 2); 
            }
            __Pyx_INCREF(__pyx_t_20);
            __Pyx_INCREF(__pyx_t_13);
            __Pyx_INCREF(__pyx_t_7);
            #else
            __pyx_t_20 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 615, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            __pyx_t_13 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 615, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __pyx_t_7 = PySequence_ITEM(sequence, 2); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 615, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_7);
            #endif
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          } else {
            Py_ssize_t index = -1;
            __pyx_t_12 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 615, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
            __pyx_t_15 = Py_TYPE(__pyx_t_12)->tp_iternext;
            index = 0; __pyx_t_20 = __pyx_t_15(__pyx_t_12); if (unlikely(!__pyx_t_20)) goto __pyx_L28_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_20);
            index = 1; __pyx_t_13 = __pyx_t_15(__pyx_t_12); if (unlikely(!__pyx_t_13)) goto __pyx_L28_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_13);
            index = 2; __pyx_t_7 = __pyx_t_15(__pyx_t_12); if (unlikely(!__pyx_t_7)) goto __pyx_L28_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_7);
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_15(__pyx_t_12), 3) < 0) __PYX_ERR(1, 615, __pyx_L1_error)
            __pyx_t_15 = NULL;
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            goto __pyx_L29_unpacking_done;
            __pyx_L28_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __pyx_t_15 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 615, __pyx_L1_error)
            __pyx_L29_unpacking_done:;
          }
          __pyx_t_16 = __Pyx_PyInt_As_int(__pyx_t_20); if (unlikely((__pyx_t_16 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 615, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
          __pyx_t_17 = __Pyx_PyInt_As_int(__pyx_t_13); if (unlikely((__pyx_t_17 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 615, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __pyx_t_18 = __Pyx_PyInt_As_int(__pyx_t_7); if (unlikely((__pyx_t_18 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 615, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_v_u_start = __pyx_t_16;
          __pyx_v_u = __pyx_t_17;
          __pyx_v_uflag = __pyx_t_18;

          /* "dysgu/graph.pyx":616
 *                 for ii in range(len(read2_aligns) - 1):
 *                     u_start, u, uflag = read2_aligns[ii]
 *                     if not uflag & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                         primary2 = u
 *                     v_start, v, vflag = read2_aligns[ii + 1]
 */
          __pyx_t_10 = ((!((__pyx_v_uflag & 0x900) != 0)) != 0);
          if (__pyx_t_10) {

            /* "dysgu/graph.pyx":617
 *                     u_start, u, uflag = read2_aligns[ii]
 *                     if not uflag & 2304:  # Is primary
 *                         primary2 = u             # <<<<<<<<<<<<<<
 *                     v_start, v, vflag = read2_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):
 */
            __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 617, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __Pyx_DECREF_SET(__pyx_v_primary2, __pyx_t_3);
            __pyx_t_3 = 0;

            /* "dysgu/graph.pyx":616
 *                 for ii in range(len(read2_aligns) - 1):
 *                     u_start, u, uflag = read2_aligns[ii]
 *                     if not uflag & 2304:  # Is primary             # <<<<<<<<<<<<<<
 *                         primary2 = u
 *                     v_start, v, vflag = read2_aligns[ii + 1]
 */
          }

          /* "dysgu/graph.pyx":618
 *                     if not uflag & 2304:  # Is primary
 *                         primary2 = u
 *                     v_start, v, vflag = read2_aligns[ii + 1]             # <<<<<<<<<<<<<<
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)
 */
          if (unlikely(__pyx_v_read2_aligns == Py_None)) {
            PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
            __PYX_ERR(1, 618, __pyx_L1_error)
          }
          __pyx_t_19 = (__pyx_v_ii + 1);
          __pyx_t_3 = __Pyx_GetItemInt_List(__pyx_v_read2_aligns, __pyx_t_19, long, 1, __Pyx_PyInt_From_long, 1, 1, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 618, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_3);
          if ((likely(PyTuple_CheckExact(__pyx_t_3))) || (PyList_CheckExact(__pyx_t_3))) {
            PyObject* sequence = __pyx_t_3;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 3)) {
              if (size > 3) __Pyx_RaiseTooManyValuesError(3);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 618, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_7 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_13 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_20 = PyTuple_GET_ITEM(sequence, 2); 
            } else {
              __pyx_t_7 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_13 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_20 = PyList_GET_ITEM(sequence, 2); 
            }
            __Pyx_INCREF(__pyx_t_7);
            __Pyx_INCREF(__pyx_t_13);
            __Pyx_INCREF(__pyx_t_20);
            #else
            __pyx_t_7 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 618, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_7);
            __pyx_t_13 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 618, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __pyx_t_20 = PySequence_ITEM(sequence, 2); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 618, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            #endif
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          } else {
            Py_ssize_t index = -1;
            __pyx_t_12 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 618, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
            __pyx_t_15 = Py_TYPE(__pyx_t_12)->tp_iternext;
            index = 0; __pyx_t_7 = __pyx_t_15(__pyx_t_12); if (unlikely(!__pyx_t_7)) goto __pyx_L31_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_7);
            index = 1; __pyx_t_13 = __pyx_t_15(__pyx_t_12); if (unlikely(!__pyx_t_13)) goto __pyx_L31_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_13);
            index = 2; __pyx_t_20 = __pyx_t_15(__pyx_t_12); if (unlikely(!__pyx_t_20)) goto __pyx_L31_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_20);
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_15(__pyx_t_12), 3) < 0) __PYX_ERR(1, 618, __pyx_L1_error)
            __pyx_t_15 = NULL;
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            goto __pyx_L32_unpacking_done;
            __pyx_L31_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __pyx_t_15 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 618, __pyx_L1_error)
            __pyx_L32_unpacking_done:;
          }
          __pyx_t_18 = __Pyx_PyInt_As_int(__pyx_t_7); if (unlikely((__pyx_t_18 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 618, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_t_17 = __Pyx_PyInt_As_int(__pyx_t_13); if (unlikely((__pyx_t_17 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 618, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __pyx_t_16 = __Pyx_PyInt_As_int(__pyx_t_20); if (unlikely((__pyx_t_16 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 618, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
          __pyx_v_v_start = __pyx_t_18;
          __pyx_v_v = __pyx_t_17;
          __pyx_v_vflag = __pyx_t_16;

          /* "dysgu/graph.pyx":619
 *                         primary2 = u
 *                     v_start, v, vflag = read2_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):             # <<<<<<<<<<<<<<
 *                         G.addEdge(u, v, w=1)
 *                 if primary2 is None:  # Check last in list
 */
          __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_hasEdge); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 619, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_20);
          __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 619, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_13);
          __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 619, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __pyx_t_12 = NULL;
          __pyx_t_16 = 0;
          if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_20))) {
            __pyx_t_12 = PyMethod_GET_SELF(__pyx_t_20);
            if (likely(__pyx_t_12)) {
              PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_20);
              __Pyx_INCREF(__pyx_t_12);
              __Pyx_INCREF(function);
              __Pyx_DECREF_SET(__pyx_t_20, function);
              __pyx_t_16 = 1;
            }
          }
          #if CYTHON_FAST_PYCALL
          if (PyFunction_Check(__pyx_t_20)) {
            PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_13, __pyx_t_7};
            __pyx_t_3 = __Pyx_PyFunction_FastCall(__pyx_t_20, __pyx_temp+1-__pyx_t_16, 2+__pyx_t_16); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 619, __pyx_L1_error)
            __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_GOTREF(__pyx_t_3);
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          } else
          #endif
          #if CYTHON_FAST_PYCCALL
          if (__Pyx_PyFastCFunction_Check(__pyx_t_20)) {
            PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_13, __pyx_t_7};
            __pyx_t_3 = __Pyx_PyCFunction_FastCall(__pyx_t_20, __pyx_temp+1-__pyx_t_16, 2+__pyx_t_16); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 619, __pyx_L1_error)
            __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_GOTREF(__pyx_t_3);
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          } else
          #endif
          {
            __pyx_t_14 = PyTuple_New(2+__pyx_t_16); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 619, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_14);
            if (__pyx_t_12) {
              __Pyx_GIVEREF(__pyx_t_12); PyTuple_SET_ITEM(__pyx_t_14, 0, __pyx_t_12); __pyx_t_12 = NULL;
            }
            __Pyx_GIVEREF(__pyx_t_13);
            PyTuple_SET_ITEM(__pyx_t_14, 0+__pyx_t_16, __pyx_t_13);
            __Pyx_GIVEREF(__pyx_t_7);
            PyTuple_SET_ITEM(__pyx_t_14, 1+__pyx_t_16, __pyx_t_7);
            __pyx_t_13 = 0;
            __pyx_t_7 = 0;
            __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_20, __pyx_t_14, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 619, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
          }
          __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
          __pyx_t_10 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(1, 619, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __pyx_t_1 = ((!__pyx_t_10) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":620
 *                     v_start, v, vflag = read2_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)             # <<<<<<<<<<<<<<
 *                 if primary2 is None:  # Check last in list
 *                     if not read2_aligns[-1][2] & 2304:
 */
            __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addEdge); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 620, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __pyx_t_20 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 620, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            __pyx_t_14 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 620, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_14);
            __pyx_t_7 = PyTuple_New(2); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 620, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_7);
            __Pyx_GIVEREF(__pyx_t_20);
            PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_20);
            __Pyx_GIVEREF(__pyx_t_14);
            PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_14);
            __pyx_t_20 = 0;
            __pyx_t_14 = 0;
            __pyx_t_14 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 620, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_14);
            if (PyDict_SetItem(__pyx_t_14, __pyx_n_s_w, __pyx_int_1) < 0) __PYX_ERR(1, 620, __pyx_L1_error)
            __pyx_t_20 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_7, __pyx_t_14); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 620, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
            __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
            __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;

            /* "dysgu/graph.pyx":619
 *                         primary2 = u
 *                     v_start, v, vflag = read2_aligns[ii + 1]
 *                     if not G.hasEdge(u, v):             # <<<<<<<<<<<<<<
 *                         G.addEdge(u, v, w=1)
 *                 if primary2 is None:  # Check last in list
 */
          }
        }

        /* "dysgu/graph.pyx":621
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)
 *                 if primary2 is None:  # Check last in list             # <<<<<<<<<<<<<<
 *                     if not read2_aligns[-1][2] & 2304:
 *                         primary2 = read2_aligns[-1][1]
 */
        __pyx_t_1 = (__pyx_v_primary2 == Py_None);
        __pyx_t_10 = (__pyx_t_1 != 0);
        if (__pyx_t_10) {

          /* "dysgu/graph.pyx":622
 *                         G.addEdge(u, v, w=1)
 *                 if primary2 is None:  # Check last in list
 *                     if not read2_aligns[-1][2] & 2304:             # <<<<<<<<<<<<<<
 *                         primary2 = read2_aligns[-1][1]
 * 
 */
          if (unlikely(__pyx_v_read2_aligns == Py_None)) {
            PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
            __PYX_ERR(1, 622, __pyx_L1_error)
          }
          __pyx_t_20 = __Pyx_GetItemInt_List(__pyx_v_read2_aligns, -1L, long, 1, __Pyx_PyInt_From_long, 1, 1, 0); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 622, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_20);
          __pyx_t_14 = __Pyx_GetItemInt(__pyx_t_20, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 622, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_14);
          __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
          __pyx_t_20 = __Pyx_PyInt_AndObjC(__pyx_t_14, __pyx_int_2304, 0x900, 0, 0); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 622, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_20);
          __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
          __pyx_t_10 = __Pyx_PyObject_IsTrue(__pyx_t_20); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(1, 622, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
          __pyx_t_1 = ((!__pyx_t_10) != 0);
          if (__pyx_t_1) {

            /* "dysgu/graph.pyx":623
 *                 if primary2 is None:  # Check last in list
 *                     if not read2_aligns[-1][2] & 2304:
 *                         primary2 = read2_aligns[-1][1]             # <<<<<<<<<<<<<<
 * 
 *         if primary1 is not None and primary2 is not None:
 */
            if (unlikely(__pyx_v_read2_aligns == Py_None)) {
              PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
              __PYX_ERR(1, 623, __pyx_L1_error)
            }
            __pyx_t_20 = __Pyx_GetItemInt_List(__pyx_v_read2_aligns, -1L, long, 1, __Pyx_PyInt_From_long, 1, 1, 0); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 623, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_20);
            __pyx_t_14 = __Pyx_GetItemInt(__pyx_t_20, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 623, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_14);
            __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
            __Pyx_DECREF_SET(__pyx_v_primary2, __pyx_t_14);
            __pyx_t_14 = 0;

            /* "dysgu/graph.pyx":622
 *                         G.addEdge(u, v, w=1)
 *                 if primary2 is None:  # Check last in list
 *                     if not read2_aligns[-1][2] & 2304:             # <<<<<<<<<<<<<<
 *                         primary2 = read2_aligns[-1][1]
 * 
 */
          }

          /* "dysgu/graph.pyx":621
 *                     if not G.hasEdge(u, v):
 *                         G.addEdge(u, v, w=1)
 *                 if primary2 is None:  # Check last in list             # <<<<<<<<<<<<<<
 *                     if not read2_aligns[-1][2] & 2304:
 *                         primary2 = read2_aligns[-1][1]
 */
        }
      }
      __pyx_L23:;

      /* "dysgu/graph.pyx":607
 *                         primary1 = read1_aligns[-1][1]
 * 
 *         if len(read2_aligns) > 0:             # <<<<<<<<<<<<<<
 *             if len(read2_aligns) == 1:
 *                 if not read2_aligns[0][2] & 2304:  # Is primary
 */
    }

    /* "dysgu/graph.pyx":625
 *                         primary2 = read2_aligns[-1][1]
 * 
 *         if primary1 is not None and primary2 is not None:             # <<<<<<<<<<<<<<
 *             if not G.hasEdge(primary1, primary2):
 *                 G.addEdge(primary1, primary2, w=1)
 */
    __pyx_t_10 = (__pyx_v_primary1 != Py_None);
    __pyx_t_21 = (__pyx_t_10 != 0);
    if (__pyx_t_21) {
    } else {
      __pyx_t_1 = __pyx_t_21;
      goto __pyx_L37_bool_binop_done;
    }
    __pyx_t_21 = (__pyx_v_primary2 != Py_None);
    __pyx_t_10 = (__pyx_t_21 != 0);
    __pyx_t_1 = __pyx_t_10;
    __pyx_L37_bool_binop_done:;
    if (__pyx_t_1) {

      /* "dysgu/graph.pyx":626
 * 
 *         if primary1 is not None and primary2 is not None:
 *             if not G.hasEdge(primary1, primary2):             # <<<<<<<<<<<<<<
 *                 G.addEdge(primary1, primary2, w=1)
 * 
 */
      __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_hasEdge); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 626, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_20);
      __pyx_t_7 = NULL;
      __pyx_t_6 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_20))) {
        __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_20);
        if (likely(__pyx_t_7)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_20);
          __Pyx_INCREF(__pyx_t_7);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_20, function);
          __pyx_t_6 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_20)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_v_primary1, __pyx_v_primary2};
        __pyx_t_14 = __Pyx_PyFunction_FastCall(__pyx_t_20, __pyx_temp+1-__pyx_t_6, 2+__pyx_t_6); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 626, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_14);
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_20)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_v_primary1, __pyx_v_primary2};
        __pyx_t_14 = __Pyx_PyCFunction_FastCall(__pyx_t_20, __pyx_temp+1-__pyx_t_6, 2+__pyx_t_6); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 626, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_14);
      } else
      #endif
      {
        __pyx_t_3 = PyTuple_New(2+__pyx_t_6); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 626, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        if (__pyx_t_7) {
          __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_7); __pyx_t_7 = NULL;
        }
        __Pyx_INCREF(__pyx_v_primary1);
        __Pyx_GIVEREF(__pyx_v_primary1);
        PyTuple_SET_ITEM(__pyx_t_3, 0+__pyx_t_6, __pyx_v_primary1);
        __Pyx_INCREF(__pyx_v_primary2);
        __Pyx_GIVEREF(__pyx_v_primary2);
        PyTuple_SET_ITEM(__pyx_t_3, 1+__pyx_t_6, __pyx_v_primary2);
        __pyx_t_14 = __Pyx_PyObject_Call(__pyx_t_20, __pyx_t_3, NULL); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 626, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_14);
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      }
      __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
      __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_14); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(1, 626, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
      __pyx_t_10 = ((!__pyx_t_1) != 0);
      if (__pyx_t_10) {

        /* "dysgu/graph.pyx":627
 *         if primary1 is not None and primary2 is not None:
 *             if not G.hasEdge(primary1, primary2):
 *                 G.addEdge(primary1, primary2, w=1)             # <<<<<<<<<<<<<<
 * 
 * 
 */
        __pyx_t_14 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addEdge); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 627, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_14);
        __pyx_t_20 = PyTuple_New(2); if (unlikely(!__pyx_t_20)) __PYX_ERR(1, 627, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_20);
        __Pyx_INCREF(__pyx_v_primary1);
        __Pyx_GIVEREF(__pyx_v_primary1);
        PyTuple_SET_ITEM(__pyx_t_20, 0, __pyx_v_primary1);
        __Pyx_INCREF(__pyx_v_primary2);
        __Pyx_GIVEREF(__pyx_v_primary2);
        PyTuple_SET_ITEM(__pyx_t_20, 1, __pyx_v_primary2);
        __pyx_t_3 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 627, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_w, __pyx_int_1) < 0) __PYX_ERR(1, 627, __pyx_L1_error)
        __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_14, __pyx_t_20, __pyx_t_3); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 627, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
        __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

        /* "dysgu/graph.pyx":626
 * 
 *         if primary1 is not None and primary2 is not None:
 *             if not G.hasEdge(primary1, primary2):             # <<<<<<<<<<<<<<
 *                 G.addEdge(primary1, primary2, w=1)
 * 
 */
      }

      /* "dysgu/graph.pyx":625
 *                         primary2 = read2_aligns[-1][1]
 * 
 *         if primary1 is not None and primary2 is not None:             # <<<<<<<<<<<<<<
 *             if not G.hasEdge(primary1, primary2):
 *                 G.addEdge(primary1, primary2, w=1)
 */
    }
  }

  /* "dysgu/graph.pyx":560
 * 
 * 
 * cdef void add_template_edges(G, TemplateEdges template_edges):             # <<<<<<<<<<<<<<
 *     # this function joins up template reads (read 1, read 2, plus any supplementary)
 *     cdef int ii, u_start, v_start, u, v, uflag, vflag
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_12);
  __Pyx_XDECREF(__pyx_t_13);
  __Pyx_XDECREF(__pyx_t_14);
  __Pyx_XDECREF(__pyx_t_20);
  __Pyx_WriteUnraisable("dysgu.graph.add_template_edges", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_read1_aligns);
  __Pyx_XDECREF(__pyx_v_read2_aligns);
  __Pyx_XDECREF(__pyx_v_primary1);
  __Pyx_XDECREF(__pyx_v_primary2);
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":639
 *     cdef public uint16_t flag
 *     cdef public uint16_t chrom
 *     def __init__(self, h, f, p, c, t, cigar_index, event_pos):             # <<<<<<<<<<<<<<
 *         self.hash_name = h
 *         self.flag = f
 */

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_h = 0;
  PyObject *__pyx_v_f = 0;
  PyObject *__pyx_v_p = 0;
  PyObject *__pyx_v_c = 0;
  PyObject *__pyx_v_t = 0;
  PyObject *__pyx_v_cigar_index = 0;
  PyObject *__pyx_v_event_pos = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_h,&__pyx_n_s_f,&__pyx_n_s_p,&__pyx_n_s_c,&__pyx_n_s_t,&__pyx_n_s_cigar_index,&__pyx_n_s_event_pos,0};
    PyObject* values[7] = {0,0,0,0,0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        CYTHON_FALLTHROUGH;
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_h)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_f)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 1); __PYX_ERR(1, 639, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_p)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 2); __PYX_ERR(1, 639, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  3:
        if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_c)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 3); __PYX_ERR(1, 639, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  4:
        if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_t)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 4); __PYX_ERR(1, 639, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  5:
        if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_cigar_index)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 5); __PYX_ERR(1, 639, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  6:
        if (likely((values[6] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_event_pos)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, 6); __PYX_ERR(1, 639, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(1, 639, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 7) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
      values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
      values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
      values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
      values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
    }
    __pyx_v_h = values[0];
    __pyx_v_f = values[1];
    __pyx_v_p = values[2];
    __pyx_v_c = values[3];
    __pyx_v_t = values[4];
    __pyx_v_cigar_index = values[5];
    __pyx_v_event_pos = values[6];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__init__", 1, 7, 7, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 639, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName___init__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), __pyx_v_h, __pyx_v_f, __pyx_v_p, __pyx_v_c, __pyx_v_t, __pyx_v_cigar_index, __pyx_v_event_pos);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName___init__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_h, PyObject *__pyx_v_f, PyObject *__pyx_v_p, PyObject *__pyx_v_c, PyObject *__pyx_v_t, PyObject *__pyx_v_cigar_index, PyObject *__pyx_v_event_pos) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  uint64_t __pyx_t_1;
  uint16_t __pyx_t_2;
  uint32_t __pyx_t_3;
  int32_t __pyx_t_4;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__init__", 0);

  /* "dysgu/graph.pyx":640
 *     cdef public uint16_t chrom
 *     def __init__(self, h, f, p, c, t, cigar_index, event_pos):
 *         self.hash_name = h             # <<<<<<<<<<<<<<
 *         self.flag = f
 *         self.pos = p
 */
  __pyx_t_1 = __Pyx_PyInt_As_uint64_t(__pyx_v_h); if (unlikely((__pyx_t_1 == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 640, __pyx_L1_error)
  __pyx_v_self->hash_name = __pyx_t_1;

  /* "dysgu/graph.pyx":641
 *     def __init__(self, h, f, p, c, t, cigar_index, event_pos):
 *         self.hash_name = h
 *         self.flag = f             # <<<<<<<<<<<<<<
 *         self.pos = p
 *         self.chrom = c
 */
  __pyx_t_2 = __Pyx_PyInt_As_uint16_t(__pyx_v_f); if (unlikely((__pyx_t_2 == ((uint16_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 641, __pyx_L1_error)
  __pyx_v_self->flag = __pyx_t_2;

  /* "dysgu/graph.pyx":642
 *         self.hash_name = h
 *         self.flag = f
 *         self.pos = p             # <<<<<<<<<<<<<<
 *         self.chrom = c
 *         self.tell = t
 */
  __pyx_t_3 = __Pyx_PyInt_As_uint32_t(__pyx_v_p); if (unlikely((__pyx_t_3 == ((uint32_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 642, __pyx_L1_error)
  __pyx_v_self->pos = __pyx_t_3;

  /* "dysgu/graph.pyx":643
 *         self.flag = f
 *         self.pos = p
 *         self.chrom = c             # <<<<<<<<<<<<<<
 *         self.tell = t
 *         self.cigar_index = cigar_index
 */
  __pyx_t_2 = __Pyx_PyInt_As_uint16_t(__pyx_v_c); if (unlikely((__pyx_t_2 == ((uint16_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 643, __pyx_L1_error)
  __pyx_v_self->chrom = __pyx_t_2;

  /* "dysgu/graph.pyx":644
 *         self.pos = p
 *         self.chrom = c
 *         self.tell = t             # <<<<<<<<<<<<<<
 *         self.cigar_index = cigar_index
 *         self.event_pos = event_pos
 */
  __pyx_t_1 = __Pyx_PyInt_As_uint64_t(__pyx_v_t); if (unlikely((__pyx_t_1 == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 644, __pyx_L1_error)
  __pyx_v_self->tell = __pyx_t_1;

  /* "dysgu/graph.pyx":645
 *         self.chrom = c
 *         self.tell = t
 *         self.cigar_index = cigar_index             # <<<<<<<<<<<<<<
 *         self.event_pos = event_pos
 * 
 */
  __pyx_t_4 = __Pyx_PyInt_As_int32_t(__pyx_v_cigar_index); if (unlikely((__pyx_t_4 == ((int32_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 645, __pyx_L1_error)
  __pyx_v_self->cigar_index = __pyx_t_4;

  /* "dysgu/graph.pyx":646
 *         self.tell = t
 *         self.cigar_index = cigar_index
 *         self.event_pos = event_pos             # <<<<<<<<<<<<<<
 * 
 *     # def as_tuple(self):
 */
  __pyx_t_3 = __Pyx_PyInt_As_uint32_t(__pyx_v_event_pos); if (unlikely((__pyx_t_3 == ((uint32_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 646, __pyx_L1_error)
  __pyx_v_self->event_pos = __pyx_t_3;

  /* "dysgu/graph.pyx":639
 *     cdef public uint16_t flag
 *     cdef public uint16_t chrom
 *     def __init__(self, h, f, p, c, t, cigar_index, event_pos):             # <<<<<<<<<<<<<<
 *         self.hash_name = h
 *         self.flag = f
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":632
 * @cython.auto_pickle(True)
 * cdef class NodeName:
 *     cdef public uint64_t hash_name             # <<<<<<<<<<<<<<
 *     cdef public uint64_t tell
 *     cdef public uint32_t pos
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_9hash_name_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_9hash_name_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_9hash_name___get__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_9hash_name___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_uint64_t(__pyx_v_self->hash_name); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 632, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.hash_name.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_9hash_name_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_9hash_name_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_9hash_name_2__set__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName_9hash_name_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  uint64_t __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __Pyx_PyInt_As_uint64_t(__pyx_v_value); if (unlikely((__pyx_t_1 == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 632, __pyx_L1_error)
  __pyx_v_self->hash_name = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.hash_name.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":633
 * cdef class NodeName:
 *     cdef public uint64_t hash_name
 *     cdef public uint64_t tell             # <<<<<<<<<<<<<<
 *     cdef public uint32_t pos
 *     cdef public int32_t cigar_index
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_4tell_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_4tell_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_4tell___get__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_4tell___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_uint64_t(__pyx_v_self->tell); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 633, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.tell.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_4tell_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_4tell_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_4tell_2__set__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName_4tell_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  uint64_t __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __Pyx_PyInt_As_uint64_t(__pyx_v_value); if (unlikely((__pyx_t_1 == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 633, __pyx_L1_error)
  __pyx_v_self->tell = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.tell.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":634
 *     cdef public uint64_t hash_name
 *     cdef public uint64_t tell
 *     cdef public uint32_t pos             # <<<<<<<<<<<<<<
 *     cdef public int32_t cigar_index
 *     cdef public uint32_t event_pos
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_3pos_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_3pos_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_3pos___get__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_3pos___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_uint32_t(__pyx_v_self->pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 634, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.pos.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_3pos_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_3pos_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_3pos_2__set__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName_3pos_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  uint32_t __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __Pyx_PyInt_As_uint32_t(__pyx_v_value); if (unlikely((__pyx_t_1 == ((uint32_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 634, __pyx_L1_error)
  __pyx_v_self->pos = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.pos.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":635
 *     cdef public uint64_t tell
 *     cdef public uint32_t pos
 *     cdef public int32_t cigar_index             # <<<<<<<<<<<<<<
 *     cdef public uint32_t event_pos
 *     cdef public uint16_t flag
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_11cigar_index_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_11cigar_index_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_11cigar_index___get__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_11cigar_index___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_int32_t(__pyx_v_self->cigar_index); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 635, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.cigar_index.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_11cigar_index_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_11cigar_index_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_11cigar_index_2__set__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName_11cigar_index_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int32_t __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __Pyx_PyInt_As_int32_t(__pyx_v_value); if (unlikely((__pyx_t_1 == ((int32_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 635, __pyx_L1_error)
  __pyx_v_self->cigar_index = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.cigar_index.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":636
 *     cdef public uint32_t pos
 *     cdef public int32_t cigar_index
 *     cdef public uint32_t event_pos             # <<<<<<<<<<<<<<
 *     cdef public uint16_t flag
 *     cdef public uint16_t chrom
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_9event_pos_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_9event_pos_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_9event_pos___get__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_9event_pos___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_uint32_t(__pyx_v_self->event_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 636, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.event_pos.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_9event_pos_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_9event_pos_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_9event_pos_2__set__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName_9event_pos_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  uint32_t __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __Pyx_PyInt_As_uint32_t(__pyx_v_value); if (unlikely((__pyx_t_1 == ((uint32_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 636, __pyx_L1_error)
  __pyx_v_self->event_pos = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.event_pos.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":637
 *     cdef public int32_t cigar_index
 *     cdef public uint32_t event_pos
 *     cdef public uint16_t flag             # <<<<<<<<<<<<<<
 *     cdef public uint16_t chrom
 *     def __init__(self, h, f, p, c, t, cigar_index, event_pos):
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_4flag_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_4flag_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_4flag___get__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_4flag___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_uint16_t(__pyx_v_self->flag); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 637, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.flag.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_4flag_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_4flag_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_4flag_2__set__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName_4flag_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  uint16_t __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __Pyx_PyInt_As_uint16_t(__pyx_v_value); if (unlikely((__pyx_t_1 == ((uint16_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 637, __pyx_L1_error)
  __pyx_v_self->flag = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.flag.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":638
 *     cdef public uint32_t event_pos
 *     cdef public uint16_t flag
 *     cdef public uint16_t chrom             # <<<<<<<<<<<<<<
 *     def __init__(self, h, f, p, c, t, cigar_index, event_pos):
 *         self.hash_name = h
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_5chrom_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_5chrom_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_5chrom___get__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_5chrom___get__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_uint16_t(__pyx_v_self->chrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 638, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.chrom.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_8NodeName_5chrom_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value); /*proto*/
static int __pyx_pw_5dysgu_5graph_8NodeName_5chrom_3__set__(PyObject *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__set__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_5chrom_2__set__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_8NodeName_5chrom_2__set__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  uint16_t __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__set__", 0);
  __pyx_t_1 = __Pyx_PyInt_As_uint16_t(__pyx_v_value); if (unlikely((__pyx_t_1 == ((uint16_t)-1)) && PyErr_Occurred())) __PYX_ERR(1, 638, __pyx_L1_error)
  __pyx_v_self->chrom = __pyx_t_1;

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("dysgu.graph.NodeName.chrom.__set__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     cdef tuple state
 *     cdef object _dict
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_3__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_2__reduce_cython__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_2__reduce_cython__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self) {
  PyObject *__pyx_v_state = 0;
  PyObject *__pyx_v__dict = 0;
  int __pyx_v_use_setstate;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_t_9;
  int __pyx_t_10;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":5
 *     cdef object _dict
 *     cdef bint use_setstate
 *     state = (self.chrom, self.cigar_index, self.event_pos, self.flag, self.hash_name, self.pos, self.tell)             # <<<<<<<<<<<<<<
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:
 */
  __pyx_t_1 = __Pyx_PyInt_From_uint16_t(__pyx_v_self->chrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyInt_From_int32_t(__pyx_v_self->cigar_index); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyInt_From_uint32_t(__pyx_v_self->event_pos); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = __Pyx_PyInt_From_uint16_t(__pyx_v_self->flag); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = __Pyx_PyInt_From_uint64_t(__pyx_v_self->hash_name); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = __Pyx_PyInt_From_uint32_t(__pyx_v_self->pos); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = __Pyx_PyInt_From_uint64_t(__pyx_v_self->tell); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_8 = PyTuple_New(7); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_8, 2, __pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_4);
  PyTuple_SET_ITEM(__pyx_t_8, 3, __pyx_t_4);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_8, 4, __pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_8, 5, __pyx_t_6);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_8, 6, __pyx_t_7);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_3 = 0;
  __pyx_t_4 = 0;
  __pyx_t_5 = 0;
  __pyx_t_6 = 0;
  __pyx_t_7 = 0;
  __pyx_v_state = ((PyObject*)__pyx_t_8);
  __pyx_t_8 = 0;

  /* "(tree fragment)":6
 *     cdef bint use_setstate
 *     state = (self.chrom, self.cigar_index, self.event_pos, self.flag, self.hash_name, self.pos, self.tell)
 *     _dict = getattr(self, '__dict__', None)             # <<<<<<<<<<<<<<
 *     if _dict is not None:
 *         state += (_dict,)
 */
  __pyx_t_8 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 6, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __pyx_v__dict = __pyx_t_8;
  __pyx_t_8 = 0;

  /* "(tree fragment)":7
 *     state = (self.chrom, self.cigar_index, self.event_pos, self.flag, self.hash_name, self.pos, self.tell)
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:             # <<<<<<<<<<<<<<
 *         state += (_dict,)
 *         use_setstate = True
 */
  __pyx_t_9 = (__pyx_v__dict != Py_None);
  __pyx_t_10 = (__pyx_t_9 != 0);
  if (__pyx_t_10) {

    /* "(tree fragment)":8
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:
 *         state += (_dict,)             # <<<<<<<<<<<<<<
 *         use_setstate = True
 *     else:
 */
    __pyx_t_8 = PyTuple_New(1); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 8, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __Pyx_INCREF(__pyx_v__dict);
    __Pyx_GIVEREF(__pyx_v__dict);
    PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_v__dict);
    __pyx_t_7 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_8); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 8, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
    __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_7));
    __pyx_t_7 = 0;

    /* "(tree fragment)":9
 *     if _dict is not None:
 *         state += (_dict,)
 *         use_setstate = True             # <<<<<<<<<<<<<<
 *     else:
 *         use_setstate = False
 */
    __pyx_v_use_setstate = 1;

    /* "(tree fragment)":7
 *     state = (self.chrom, self.cigar_index, self.event_pos, self.flag, self.hash_name, self.pos, self.tell)
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:             # <<<<<<<<<<<<<<
 *         state += (_dict,)
 *         use_setstate = True
 */
    goto __pyx_L3;
  }

  /* "(tree fragment)":11
 *         use_setstate = True
 *     else:
 *         use_setstate = False             # <<<<<<<<<<<<<<
 *     if use_setstate:
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, None), state
 */
  /*else*/ {
    __pyx_v_use_setstate = 0;
  }
  __pyx_L3:;

  /* "(tree fragment)":12
 *     else:
 *         use_setstate = False
 *     if use_setstate:             # <<<<<<<<<<<<<<
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, None), state
 *     else:
 */
  __pyx_t_10 = (__pyx_v_use_setstate != 0);
  if (__pyx_t_10) {

    /* "(tree fragment)":13
 *         use_setstate = False
 *     if use_setstate:
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, None), state             # <<<<<<<<<<<<<<
 *     else:
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, state)
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_n_s_pyx_unpickle_NodeName); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    PyTuple_SET_ITEM(__pyx_t_8, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_INCREF(__pyx_int_68233231);
    __Pyx_GIVEREF(__pyx_int_68233231);
    PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_int_68233231);
    __Pyx_INCREF(Py_None);
    __Pyx_GIVEREF(Py_None);
    PyTuple_SET_ITEM(__pyx_t_8, 2, Py_None);
    __pyx_t_6 = PyTuple_New(3); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_GIVEREF(__pyx_t_7);
    PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_7);
    __Pyx_GIVEREF(__pyx_t_8);
    PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_8);
    __Pyx_INCREF(__pyx_v_state);
    __Pyx_GIVEREF(__pyx_v_state);
    PyTuple_SET_ITEM(__pyx_t_6, 2, __pyx_v_state);
    __pyx_t_7 = 0;
    __pyx_t_8 = 0;
    __pyx_r = __pyx_t_6;
    __pyx_t_6 = 0;
    goto __pyx_L0;

    /* "(tree fragment)":12
 *     else:
 *         use_setstate = False
 *     if use_setstate:             # <<<<<<<<<<<<<<
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, None), state
 *     else:
 */
  }

  /* "(tree fragment)":15
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, None), state
 *     else:
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, state)             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     __pyx_unpickle_NodeName__set_state(self, __pyx_state)
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_n_s_pyx_unpickle_NodeName); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    PyTuple_SET_ITEM(__pyx_t_8, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_INCREF(__pyx_int_68233231);
    __Pyx_GIVEREF(__pyx_int_68233231);
    PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_int_68233231);
    __Pyx_INCREF(__pyx_v_state);
    __Pyx_GIVEREF(__pyx_v_state);
    PyTuple_SET_ITEM(__pyx_t_8, 2, __pyx_v_state);
    __pyx_t_7 = PyTuple_New(2); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_GIVEREF(__pyx_t_6);
    PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_6);
    __Pyx_GIVEREF(__pyx_t_8);
    PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_8);
    __pyx_t_6 = 0;
    __pyx_t_8 = 0;
    __pyx_r = __pyx_t_7;
    __pyx_t_7 = 0;
    goto __pyx_L0;
  }

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     cdef tuple state
 *     cdef object _dict
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("dysgu.graph.NodeName.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_state);
  __Pyx_XDECREF(__pyx_v__dict);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":16
 *     else:
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, state)
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_unpickle_NodeName__set_state(self, __pyx_state)
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_8NodeName_5__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_8NodeName_4__setstate_cython__(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8NodeName_4__setstate_cython__(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":17
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, state)
 * def __setstate_cython__(self, __pyx_state):
 *     __pyx_unpickle_NodeName__set_state(self, __pyx_state)             # <<<<<<<<<<<<<<
 */
  if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(0, 17, __pyx_L1_error)
  __pyx_t_1 = __pyx_f_5dysgu_5graph___pyx_unpickle_NodeName__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "(tree fragment)":16
 *     else:
 *         return __pyx_unpickle_NodeName, (type(self), 0x411280f, state)
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_unpickle_NodeName__set_state(self, __pyx_state)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeName.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":661
 *     cdef vector[uint32_t] event_pos
 * 
 *     def __cinit__(self):  # Possibly use a vector of structs instead. Reason for doing this way was to save mem             # <<<<<<<<<<<<<<
 *         # node names have the form (hash qname, flag, pos, chrom, tell, cigar index, event pos)
 *         pass
 */

/* Python wrapper */
static int __pyx_pw_5dysgu_5graph_10NodeToName_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_pw_5dysgu_5graph_10NodeToName_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
  if (unlikely(PyTuple_GET_SIZE(__pyx_args) > 0)) {
    __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 0, 0, PyTuple_GET_SIZE(__pyx_args)); return -1;}
  if (unlikely(__pyx_kwds) && unlikely(PyDict_Size(__pyx_kwds) > 0) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__cinit__", 0))) return -1;
  __pyx_r = __pyx_pf_5dysgu_5graph_10NodeToName___cinit__(((struct __pyx_obj_5dysgu_5graph_NodeToName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_5dysgu_5graph_10NodeToName___cinit__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__cinit__", 0);

  /* function exit code */
  __pyx_r = 0;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":665
 *         pass
 * 
 *     cdef void append(self, long a, int b, int c, int d, long e, int f, int g) nogil:             # <<<<<<<<<<<<<<
 *         self.h.push_back(a)
 *         self.f.push_back(b)
 */

static void __pyx_f_5dysgu_5graph_10NodeToName_append(struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self, long __pyx_v_a, int __pyx_v_b, int __pyx_v_c, int __pyx_v_d, long __pyx_v_e, int __pyx_v_f, int __pyx_v_g) {
  int __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "dysgu/graph.pyx":666
 * 
 *     cdef void append(self, long a, int b, int c, int d, long e, int f, int g) nogil:
 *         self.h.push_back(a)             # <<<<<<<<<<<<<<
 *         self.f.push_back(b)
 *         self.p.push_back(c)
 */
  try {
    __pyx_v_self->h.push_back(__pyx_v_a);
  } catch(...) {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_CppExn2PyErr();
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
    __PYX_ERR(1, 666, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":667
 *     cdef void append(self, long a, int b, int c, int d, long e, int f, int g) nogil:
 *         self.h.push_back(a)
 *         self.f.push_back(b)             # <<<<<<<<<<<<<<
 *         self.p.push_back(c)
 *         self.c.push_back(d)
 */
  try {
    __pyx_v_self->f.push_back(__pyx_v_b);
  } catch(...) {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_CppExn2PyErr();
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
    __PYX_ERR(1, 667, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":668
 *         self.h.push_back(a)
 *         self.f.push_back(b)
 *         self.p.push_back(c)             # <<<<<<<<<<<<<<
 *         self.c.push_back(d)
 *         if e == -1:  # means to look in read buffer instead
 */
  try {
    __pyx_v_self->p.push_back(__pyx_v_c);
  } catch(...) {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_CppExn2PyErr();
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
    __PYX_ERR(1, 668, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":669
 *         self.f.push_back(b)
 *         self.p.push_back(c)
 *         self.c.push_back(d)             # <<<<<<<<<<<<<<
 *         if e == -1:  # means to look in read buffer instead
 *             e = 0
 */
  try {
    __pyx_v_self->c.push_back(__pyx_v_d);
  } catch(...) {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_CppExn2PyErr();
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
    __PYX_ERR(1, 669, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":670
 *         self.p.push_back(c)
 *         self.c.push_back(d)
 *         if e == -1:  # means to look in read buffer instead             # <<<<<<<<<<<<<<
 *             e = 0
 *         self.t.push_back(e)
 */
  __pyx_t_1 = ((__pyx_v_e == -1L) != 0);
  if (__pyx_t_1) {

    /* "dysgu/graph.pyx":671
 *         self.c.push_back(d)
 *         if e == -1:  # means to look in read buffer instead
 *             e = 0             # <<<<<<<<<<<<<<
 *         self.t.push_back(e)
 *         self.cigar_index.push_back(f)
 */
    __pyx_v_e = 0;

    /* "dysgu/graph.pyx":670
 *         self.p.push_back(c)
 *         self.c.push_back(d)
 *         if e == -1:  # means to look in read buffer instead             # <<<<<<<<<<<<<<
 *             e = 0
 *         self.t.push_back(e)
 */
  }

  /* "dysgu/graph.pyx":672
 *         if e == -1:  # means to look in read buffer instead
 *             e = 0
 *         self.t.push_back(e)             # <<<<<<<<<<<<<<
 *         self.cigar_index.push_back(f)
 *         self.event_pos.push_back(g)
 */
  try {
    __pyx_v_self->t.push_back(__pyx_v_e);
  } catch(...) {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_CppExn2PyErr();
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
    __PYX_ERR(1, 672, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":673
 *             e = 0
 *         self.t.push_back(e)
 *         self.cigar_index.push_back(f)             # <<<<<<<<<<<<<<
 *         self.event_pos.push_back(g)
 * 
 */
  try {
    __pyx_v_self->cigar_index.push_back(__pyx_v_f);
  } catch(...) {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_CppExn2PyErr();
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
    __PYX_ERR(1, 673, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":674
 *         self.t.push_back(e)
 *         self.cigar_index.push_back(f)
 *         self.event_pos.push_back(g)             # <<<<<<<<<<<<<<
 * 
 *     def __getitem__(self, idx):
 */
  try {
    __pyx_v_self->event_pos.push_back(__pyx_v_g);
  } catch(...) {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_CppExn2PyErr();
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
    __PYX_ERR(1, 674, __pyx_L1_error)
  }

  /* "dysgu/graph.pyx":665
 *         pass
 * 
 *     cdef void append(self, long a, int b, int c, int d, long e, int f, int g) nogil:             # <<<<<<<<<<<<<<
 *         self.h.push_back(a)
 *         self.f.push_back(b)
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_WriteUnraisable("dysgu.graph.NodeToName.append", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 1);
  __pyx_L0:;
}

/* "dysgu/graph.pyx":676
 *         self.event_pos.push_back(g)
 * 
 *     def __getitem__(self, idx):             # <<<<<<<<<<<<<<
 *         return NodeName(self.h[idx], self.f[idx], self.p[idx], self.c[idx], self.t[idx], self.cigar_index[idx], self.event_pos[idx])
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_10NodeToName_3__getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_idx); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_10NodeToName_3__getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_idx) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getitem__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_10NodeToName_2__getitem__(((struct __pyx_obj_5dysgu_5graph_NodeToName *)__pyx_v_self), ((PyObject *)__pyx_v_idx));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_10NodeToName_2__getitem__(struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self, PyObject *__pyx_v_idx) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  std::vector<uint64_t> ::size_type __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  std::vector<uint16_t> ::size_type __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  std::vector<uint32_t> ::size_type __pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  std::vector<int32_t> ::size_type __pyx_t_9;
  PyObject *__pyx_t_10 = NULL;
  PyObject *__pyx_t_11 = NULL;
  PyObject *__pyx_t_12 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getitem__", 0);

  /* "dysgu/graph.pyx":677
 * 
 *     def __getitem__(self, idx):
 *         return NodeName(self.h[idx], self.f[idx], self.p[idx], self.c[idx], self.t[idx], self.cigar_index[idx], self.event_pos[idx])             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_As_size_t(__pyx_v_idx); if (unlikely((__pyx_t_1 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 677, __pyx_L1_error)
  __pyx_t_2 = __Pyx_PyInt_From_uint64_t((__pyx_v_self->h[__pyx_t_1])); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyInt_As_size_t(__pyx_v_idx); if (unlikely((__pyx_t_3 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 677, __pyx_L1_error)
  __pyx_t_4 = __Pyx_PyInt_From_uint16_t((__pyx_v_self->f[__pyx_t_3])); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = __Pyx_PyInt_As_size_t(__pyx_v_idx); if (unlikely((__pyx_t_5 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 677, __pyx_L1_error)
  __pyx_t_6 = __Pyx_PyInt_From_uint32_t((__pyx_v_self->p[__pyx_t_5])); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_3 = __Pyx_PyInt_As_size_t(__pyx_v_idx); if (unlikely((__pyx_t_3 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 677, __pyx_L1_error)
  __pyx_t_7 = __Pyx_PyInt_From_uint16_t((__pyx_v_self->c[__pyx_t_3])); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_1 = __Pyx_PyInt_As_size_t(__pyx_v_idx); if (unlikely((__pyx_t_1 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 677, __pyx_L1_error)
  __pyx_t_8 = __Pyx_PyInt_From_uint64_t((__pyx_v_self->t[__pyx_t_1])); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __pyx_t_9 = __Pyx_PyInt_As_size_t(__pyx_v_idx); if (unlikely((__pyx_t_9 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 677, __pyx_L1_error)
  __pyx_t_10 = __Pyx_PyInt_From_int32_t((__pyx_v_self->cigar_index[__pyx_t_9])); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_10);
  __pyx_t_5 = __Pyx_PyInt_As_size_t(__pyx_v_idx); if (unlikely((__pyx_t_5 == (size_t)-1) && PyErr_Occurred())) __PYX_ERR(1, 677, __pyx_L1_error)
  __pyx_t_11 = __Pyx_PyInt_From_uint32_t((__pyx_v_self->event_pos[__pyx_t_5])); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_11);
  __pyx_t_12 = PyTuple_New(7); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_12);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_12, 0, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_4);
  PyTuple_SET_ITEM(__pyx_t_12, 1, __pyx_t_4);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_12, 2, __pyx_t_6);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_12, 3, __pyx_t_7);
  __Pyx_GIVEREF(__pyx_t_8);
  PyTuple_SET_ITEM(__pyx_t_12, 4, __pyx_t_8);
  __Pyx_GIVEREF(__pyx_t_10);
  PyTuple_SET_ITEM(__pyx_t_12, 5, __pyx_t_10);
  __Pyx_GIVEREF(__pyx_t_11);
  PyTuple_SET_ITEM(__pyx_t_12, 6, __pyx_t_11);
  __pyx_t_2 = 0;
  __pyx_t_4 = 0;
  __pyx_t_6 = 0;
  __pyx_t_7 = 0;
  __pyx_t_8 = 0;
  __pyx_t_10 = 0;
  __pyx_t_11 = 0;
  __pyx_t_11 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_5dysgu_5graph_NodeName), __pyx_t_12, NULL); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 677, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_11);
  __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
  __pyx_r = __pyx_t_11;
  __pyx_t_11 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":676
 *         self.event_pos.push_back(g)
 * 
 *     def __getitem__(self, idx):             # <<<<<<<<<<<<<<
 *         return NodeName(self.h[idx], self.f[idx], self.p[idx], self.c[idx], self.t[idx], self.cigar_index[idx], self.event_pos[idx])
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_XDECREF(__pyx_t_11);
  __Pyx_XDECREF(__pyx_t_12);
  __Pyx_AddTraceback("dysgu.graph.NodeToName.__getitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_10NodeToName_5__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_10NodeToName_5__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_10NodeToName_4__reduce_cython__(((struct __pyx_obj_5dysgu_5graph_NodeToName *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_10NodeToName_4__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__5, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 2, __pyx_L1_error)

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeToName.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_10NodeToName_7__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_10NodeToName_7__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf_5dysgu_5graph_10NodeToName_6__setstate_cython__(((struct __pyx_obj_5dysgu_5graph_NodeToName *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_10NodeToName_6__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__6, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 4, __pyx_L1_error)

  /* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.NodeToName.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":680
 * 
 * 
 * cdef get_query_pos_from_cigarstring(cigar, pos):             # <<<<<<<<<<<<<<
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0
 */

static PyObject *__pyx_f_5dysgu_5graph_get_query_pos_from_cigarstring(PyObject *__pyx_v_cigar, PyObject *__pyx_v_pos) {
  int __pyx_v_end;
  int __pyx_v_start;
  int __pyx_v_i;
  int __pyx_v_ref_end;
  int __pyx_v_slen;
  PyObject *__pyx_v_opp = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  Py_ssize_t __pyx_t_3;
  PyObject *(*__pyx_t_4)(PyObject *);
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *(*__pyx_t_9)(PyObject *);
  int __pyx_t_10;
  int __pyx_t_11;
  int __pyx_t_12;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_query_pos_from_cigarstring", 0);

  /* "dysgu/graph.pyx":682
 * cdef get_query_pos_from_cigarstring(cigar, pos):
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0             # <<<<<<<<<<<<<<
 *     cdef int start = 0
 *     cdef bint i = 0
 */
  __pyx_v_end = 0;

  /* "dysgu/graph.pyx":683
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0
 *     cdef int start = 0             # <<<<<<<<<<<<<<
 *     cdef bint i = 0
 *     cdef int ref_end = pos
 */
  __pyx_v_start = 0;

  /* "dysgu/graph.pyx":684
 *     cdef int end = 0
 *     cdef int start = 0
 *     cdef bint i = 0             # <<<<<<<<<<<<<<
 *     cdef int ref_end = pos
 *     cdef int slen
 */
  __pyx_v_i = 0;

  /* "dysgu/graph.pyx":685
 *     cdef int start = 0
 *     cdef bint i = 0
 *     cdef int ref_end = pos             # <<<<<<<<<<<<<<
 *     cdef int slen
 *     for slen, opp in cigar:
 */
  __pyx_t_1 = __Pyx_PyInt_As_int(__pyx_v_pos); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 685, __pyx_L1_error)
  __pyx_v_ref_end = __pyx_t_1;

  /* "dysgu/graph.pyx":687
 *     cdef int ref_end = pos
 *     cdef int slen
 *     for slen, opp in cigar:             # <<<<<<<<<<<<<<
 *         if not i and opp in "SH":
 *             start += slen
 */
  if (likely(PyList_CheckExact(__pyx_v_cigar)) || PyTuple_CheckExact(__pyx_v_cigar)) {
    __pyx_t_2 = __pyx_v_cigar; __Pyx_INCREF(__pyx_t_2); __pyx_t_3 = 0;
    __pyx_t_4 = NULL;
  } else {
    __pyx_t_3 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_cigar); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 687, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_4 = Py_TYPE(__pyx_t_2)->tp_iternext; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 687, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_4)) {
      if (likely(PyList_CheckExact(__pyx_t_2))) {
        if (__pyx_t_3 >= PyList_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(1, 687, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 687, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      } else {
        if (__pyx_t_3 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(1, 687, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 687, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      }
    } else {
      __pyx_t_5 = __pyx_t_4(__pyx_t_2);
      if (unlikely(!__pyx_t_5)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 687, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_5);
    }
    if ((likely(PyTuple_CheckExact(__pyx_t_5))) || (PyList_CheckExact(__pyx_t_5))) {
      PyObject* sequence = __pyx_t_5;
      Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
      if (unlikely(size != 2)) {
        if (size > 2) __Pyx_RaiseTooManyValuesError(2);
        else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
        __PYX_ERR(1, 687, __pyx_L1_error)
      }
      #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
      if (likely(PyTuple_CheckExact(sequence))) {
        __pyx_t_6 = PyTuple_GET_ITEM(sequence, 0); 
        __pyx_t_7 = PyTuple_GET_ITEM(sequence, 1); 
      } else {
        __pyx_t_6 = PyList_GET_ITEM(sequence, 0); 
        __pyx_t_7 = PyList_GET_ITEM(sequence, 1); 
      }
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(__pyx_t_7);
      #else
      __pyx_t_6 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 687, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_7 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 687, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      #endif
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    } else {
      Py_ssize_t index = -1;
      __pyx_t_8 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 687, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_t_9 = Py_TYPE(__pyx_t_8)->tp_iternext;
      index = 0; __pyx_t_6 = __pyx_t_9(__pyx_t_8); if (unlikely(!__pyx_t_6)) goto __pyx_L5_unpacking_failed;
      __Pyx_GOTREF(__pyx_t_6);
      index = 1; __pyx_t_7 = __pyx_t_9(__pyx_t_8); if (unlikely(!__pyx_t_7)) goto __pyx_L5_unpacking_failed;
      __Pyx_GOTREF(__pyx_t_7);
      if (__Pyx_IternextUnpackEndCheck(__pyx_t_9(__pyx_t_8), 2) < 0) __PYX_ERR(1, 687, __pyx_L1_error)
      __pyx_t_9 = NULL;
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      goto __pyx_L6_unpacking_done;
      __pyx_L5_unpacking_failed:;
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __pyx_t_9 = NULL;
      if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
      __PYX_ERR(1, 687, __pyx_L1_error)
      __pyx_L6_unpacking_done:;
    }
    __pyx_t_1 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 687, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_v_slen = __pyx_t_1;
    __Pyx_XDECREF_SET(__pyx_v_opp, __pyx_t_7);
    __pyx_t_7 = 0;

    /* "dysgu/graph.pyx":688
 *     cdef int slen
 *     for slen, opp in cigar:
 *         if not i and opp in "SH":             # <<<<<<<<<<<<<<
 *             start += slen
 *             end += slen
 */
    __pyx_t_11 = ((!(__pyx_v_i != 0)) != 0);
    if (__pyx_t_11) {
    } else {
      __pyx_t_10 = __pyx_t_11;
      goto __pyx_L8_bool_binop_done;
    }
    __pyx_t_11 = (__Pyx_PyUnicode_ContainsTF(__pyx_v_opp, __pyx_n_u_SH, Py_EQ)); if (unlikely(__pyx_t_11 < 0)) __PYX_ERR(1, 688, __pyx_L1_error)
    __pyx_t_12 = (__pyx_t_11 != 0);
    __pyx_t_10 = __pyx_t_12;
    __pyx_L8_bool_binop_done:;
    if (__pyx_t_10) {

      /* "dysgu/graph.pyx":689
 *     for slen, opp in cigar:
 *         if not i and opp in "SH":
 *             start += slen             # <<<<<<<<<<<<<<
 *             end += slen
 *             i = 1
 */
      __pyx_v_start = (__pyx_v_start + __pyx_v_slen);

      /* "dysgu/graph.pyx":690
 *         if not i and opp in "SH":
 *             start += slen
 *             end += slen             # <<<<<<<<<<<<<<
 *             i = 1
 *         elif opp == "D":
 */
      __pyx_v_end = (__pyx_v_end + __pyx_v_slen);

      /* "dysgu/graph.pyx":691
 *             start += slen
 *             end += slen
 *             i = 1             # <<<<<<<<<<<<<<
 *         elif opp == "D":
 *             ref_end += slen
 */
      __pyx_v_i = 1;

      /* "dysgu/graph.pyx":688
 *     cdef int slen
 *     for slen, opp in cigar:
 *         if not i and opp in "SH":             # <<<<<<<<<<<<<<
 *             start += slen
 *             end += slen
 */
      goto __pyx_L7;
    }

    /* "dysgu/graph.pyx":692
 *             end += slen
 *             i = 1
 *         elif opp == "D":             # <<<<<<<<<<<<<<
 *             ref_end += slen
 *         elif opp == "I":
 */
    __pyx_t_10 = (__Pyx_PyUnicode_Equals(__pyx_v_opp, __pyx_n_u_D, Py_EQ)); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(1, 692, __pyx_L1_error)
    if (__pyx_t_10) {

      /* "dysgu/graph.pyx":693
 *             i = 1
 *         elif opp == "D":
 *             ref_end += slen             # <<<<<<<<<<<<<<
 *         elif opp == "I":
 *             end += slen
 */
      __pyx_v_ref_end = (__pyx_v_ref_end + __pyx_v_slen);

      /* "dysgu/graph.pyx":692
 *             end += slen
 *             i = 1
 *         elif opp == "D":             # <<<<<<<<<<<<<<
 *             ref_end += slen
 *         elif opp == "I":
 */
      goto __pyx_L7;
    }

    /* "dysgu/graph.pyx":694
 *         elif opp == "D":
 *             ref_end += slen
 *         elif opp == "I":             # <<<<<<<<<<<<<<
 *             end += slen
 *         elif opp in "M=X":
 */
    __pyx_t_10 = (__Pyx_PyUnicode_Equals(__pyx_v_opp, __pyx_n_u_I, Py_EQ)); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(1, 694, __pyx_L1_error)
    if (__pyx_t_10) {

      /* "dysgu/graph.pyx":695
 *             ref_end += slen
 *         elif opp == "I":
 *             end += slen             # <<<<<<<<<<<<<<
 *         elif opp in "M=X":
 *             end += slen
 */
      __pyx_v_end = (__pyx_v_end + __pyx_v_slen);

      /* "dysgu/graph.pyx":694
 *         elif opp == "D":
 *             ref_end += slen
 *         elif opp == "I":             # <<<<<<<<<<<<<<
 *             end += slen
 *         elif opp in "M=X":
 */
      goto __pyx_L7;
    }

    /* "dysgu/graph.pyx":696
 *         elif opp == "I":
 *             end += slen
 *         elif opp in "M=X":             # <<<<<<<<<<<<<<
 *             end += slen
 *             ref_end += slen
 */
    __pyx_t_10 = (__Pyx_PyUnicode_ContainsTF(__pyx_v_opp, __pyx_kp_u_M_X, Py_EQ)); if (unlikely(__pyx_t_10 < 0)) __PYX_ERR(1, 696, __pyx_L1_error)
    __pyx_t_12 = (__pyx_t_10 != 0);
    if (__pyx_t_12) {

      /* "dysgu/graph.pyx":697
 *             end += slen
 *         elif opp in "M=X":
 *             end += slen             # <<<<<<<<<<<<<<
 *             ref_end += slen
 *         i = 1
 */
      __pyx_v_end = (__pyx_v_end + __pyx_v_slen);

      /* "dysgu/graph.pyx":698
 *         elif opp in "M=X":
 *             end += slen
 *             ref_end += slen             # <<<<<<<<<<<<<<
 *         i = 1
 *     return start, end, pos, ref_end
 */
      __pyx_v_ref_end = (__pyx_v_ref_end + __pyx_v_slen);

      /* "dysgu/graph.pyx":696
 *         elif opp == "I":
 *             end += slen
 *         elif opp in "M=X":             # <<<<<<<<<<<<<<
 *             end += slen
 *             ref_end += slen
 */
    }
    __pyx_L7:;

    /* "dysgu/graph.pyx":699
 *             end += slen
 *             ref_end += slen
 *         i = 1             # <<<<<<<<<<<<<<
 *     return start, end, pos, ref_end
 * 
 */
    __pyx_v_i = 1;

    /* "dysgu/graph.pyx":687
 *     cdef int ref_end = pos
 *     cdef int slen
 *     for slen, opp in cigar:             # <<<<<<<<<<<<<<
 *         if not i and opp in "SH":
 *             start += slen
 */
  }
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":700
 *             ref_end += slen
 *         i = 1
 *     return start, end, pos, ref_end             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_start); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 700, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_end); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 700, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_ref_end); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 700, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_6 = PyTuple_New(4); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 700, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_5);
  __Pyx_INCREF(__pyx_v_pos);
  __Pyx_GIVEREF(__pyx_v_pos);
  PyTuple_SET_ITEM(__pyx_t_6, 2, __pyx_v_pos);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_6, 3, __pyx_t_7);
  __pyx_t_2 = 0;
  __pyx_t_5 = 0;
  __pyx_t_7 = 0;
  __pyx_r = __pyx_t_6;
  __pyx_t_6 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":680
 * 
 * 
 * cdef get_query_pos_from_cigarstring(cigar, pos):             # <<<<<<<<<<<<<<
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("dysgu.graph.get_query_pos_from_cigarstring", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_opp);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":703
 * 
 * 
 * cdef get_query_pos_from_cigartuples(r):             # <<<<<<<<<<<<<<
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0
 */

static PyObject *__pyx_f_5dysgu_5graph_get_query_pos_from_cigartuples(PyObject *__pyx_v_r) {
  int __pyx_v_end;
  int __pyx_v_start;
  int __pyx_v_query_length;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_t_5;
  int __pyx_t_6;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_query_pos_from_cigartuples", 0);

  /* "dysgu/graph.pyx":705
 * cdef get_query_pos_from_cigartuples(r):
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0             # <<<<<<<<<<<<<<
 *     cdef int start = 0
 *     cdef int query_length = r.infer_read_length()  # Note, this also counts hard-clips
 */
  __pyx_v_end = 0;

  /* "dysgu/graph.pyx":706
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0
 *     cdef int start = 0             # <<<<<<<<<<<<<<
 *     cdef int query_length = r.infer_read_length()  # Note, this also counts hard-clips
 * 
 */
  __pyx_v_start = 0;

  /* "dysgu/graph.pyx":707
 *     cdef int end = 0
 *     cdef int start = 0
 *     cdef int query_length = r.infer_read_length()  # Note, this also counts hard-clips             # <<<<<<<<<<<<<<
 * 
 *     end = query_length
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_infer_read_length); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 707, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_3)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_3);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
    }
  }
  __pyx_t_1 = (__pyx_t_3) ? __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3) : __Pyx_PyObject_CallNoArg(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 707, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 707, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_query_length = __pyx_t_4;

  /* "dysgu/graph.pyx":709
 *     cdef int query_length = r.infer_read_length()  # Note, this also counts hard-clips
 * 
 *     end = query_length             # <<<<<<<<<<<<<<
 *     if r.cigartuples[0][0] == 4 or r.cigartuples[0][0] == 5:
 *         start += r.cigartuples[0][1]
 */
  __pyx_v_end = __pyx_v_query_length;

  /* "dysgu/graph.pyx":710
 * 
 *     end = query_length
 *     if r.cigartuples[0][0] == 4 or r.cigartuples[0][0] == 5:             # <<<<<<<<<<<<<<
 *         start += r.cigartuples[0][1]
 *     if r.cigartuples[-1][0] == 4 or r.cigartuples[-1][0] == 5:
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_GetItemInt(__pyx_t_1, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_2, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyInt_EqObjC(__pyx_t_1, __pyx_int_4, 4, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  if (!__pyx_t_6) {
  } else {
    __pyx_t_5 = __pyx_t_6;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_2, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_GetItemInt(__pyx_t_1, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyInt_EqObjC(__pyx_t_2, __pyx_int_5, 5, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 710, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_5 = __pyx_t_6;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_5) {

    /* "dysgu/graph.pyx":711
 *     end = query_length
 *     if r.cigartuples[0][0] == 4 or r.cigartuples[0][0] == 5:
 *         start += r.cigartuples[0][1]             # <<<<<<<<<<<<<<
 *     if r.cigartuples[-1][0] == 4 or r.cigartuples[-1][0] == 5:
 *         end -= r.cigartuples[-1][1]
 */
    __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 711, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 711, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_2, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 711, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = __Pyx_GetItemInt(__pyx_t_3, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 711, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = PyNumber_InPlaceAdd(__pyx_t_1, __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 711, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 711, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_start = __pyx_t_4;

    /* "dysgu/graph.pyx":710
 * 
 *     end = query_length
 *     if r.cigartuples[0][0] == 4 or r.cigartuples[0][0] == 5:             # <<<<<<<<<<<<<<
 *         start += r.cigartuples[0][1]
 *     if r.cigartuples[-1][0] == 4 or r.cigartuples[-1][0] == 5:
 */
  }

  /* "dysgu/graph.pyx":712
 *     if r.cigartuples[0][0] == 4 or r.cigartuples[0][0] == 5:
 *         start += r.cigartuples[0][1]
 *     if r.cigartuples[-1][0] == 4 or r.cigartuples[-1][0] == 5:             # <<<<<<<<<<<<<<
 *         end -= r.cigartuples[-1][1]
 *     return start, end, r.pos, r.reference_end, r.rname, r.mapq, "input"
 */
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_2 = __Pyx_GetItemInt(__pyx_t_3, -1L, long, 1, __Pyx_PyInt_From_long, 0, 1, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_2, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyInt_EqObjC(__pyx_t_3, __pyx_int_4, 4, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  if (!__pyx_t_6) {
  } else {
    __pyx_t_5 = __pyx_t_6;
    goto __pyx_L7_bool_binop_done;
  }
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_2, -1L, long, 1, __Pyx_PyInt_From_long, 0, 1, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_GetItemInt(__pyx_t_3, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyInt_EqObjC(__pyx_t_2, __pyx_int_5, 5, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 712, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_5 = __pyx_t_6;
  __pyx_L7_bool_binop_done:;
  if (__pyx_t_5) {

    /* "dysgu/graph.pyx":713
 *         start += r.cigartuples[0][1]
 *     if r.cigartuples[-1][0] == 4 or r.cigartuples[-1][0] == 5:
 *         end -= r.cigartuples[-1][1]             # <<<<<<<<<<<<<<
 *     return start, end, r.pos, r.reference_end, r.rname, r.mapq, "input"
 * 
 */
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_end); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 713, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 713, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_2, -1L, long, 1, __Pyx_PyInt_From_long, 0, 1, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 713, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = __Pyx_GetItemInt(__pyx_t_1, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 713, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = PyNumber_InPlaceSubtract(__pyx_t_3, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 713, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 713, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_end = __pyx_t_4;

    /* "dysgu/graph.pyx":712
 *     if r.cigartuples[0][0] == 4 or r.cigartuples[0][0] == 5:
 *         start += r.cigartuples[0][1]
 *     if r.cigartuples[-1][0] == 4 or r.cigartuples[-1][0] == 5:             # <<<<<<<<<<<<<<
 *         end -= r.cigartuples[-1][1]
 *     return start, end, r.pos, r.reference_end, r.rname, r.mapq, "input"
 */
  }

  /* "dysgu/graph.pyx":714
 *     if r.cigartuples[-1][0] == 4 or r.cigartuples[-1][0] == 5:
 *         end -= r.cigartuples[-1][1]
 *     return start, end, r.pos, r.reference_end, r.rname, r.mapq, "input"             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 714, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_end); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 714, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_pos); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 714, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_reference_end); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 714, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_rname); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 714, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_mapq); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 714, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_9);
  __pyx_t_10 = PyTuple_New(7); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 714, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_10);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_10, 2, __pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_7);
  PyTuple_SET_ITEM(__pyx_t_10, 3, __pyx_t_7);
  __Pyx_GIVEREF(__pyx_t_8);
  PyTuple_SET_ITEM(__pyx_t_10, 4, __pyx_t_8);
  __Pyx_GIVEREF(__pyx_t_9);
  PyTuple_SET_ITEM(__pyx_t_10, 5, __pyx_t_9);
  __Pyx_INCREF(__pyx_n_u_input);
  __Pyx_GIVEREF(__pyx_n_u_input);
  PyTuple_SET_ITEM(__pyx_t_10, 6, __pyx_n_u_input);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_3 = 0;
  __pyx_t_7 = 0;
  __pyx_t_8 = 0;
  __pyx_t_9 = 0;
  __pyx_r = __pyx_t_10;
  __pyx_t_10 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":703
 * 
 * 
 * cdef get_query_pos_from_cigartuples(r):             # <<<<<<<<<<<<<<
 *     # Infer the position on the query sequence of the alignment using cigar string
 *     cdef int end = 0
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_AddTraceback("dysgu.graph.get_query_pos_from_cigartuples", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":754
 *         query_aligns.append((query_start, query_end, ref_start, ref_end, chrom2, mq, strand == current_strand))
 * 
 *     query_aligns = sorted(query_aligns, key=lambda x: x[0])             # <<<<<<<<<<<<<<
 * 
 *     cdef int index = 0
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_22alignments_from_sa_tag_lambda(PyObject *__pyx_self, PyObject *__pyx_v_x); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_22alignments_from_sa_tag_lambda = {"lambda", (PyCFunction)__pyx_pw_5dysgu_5graph_22alignments_from_sa_tag_lambda, METH_O, 0};
static PyObject *__pyx_pw_5dysgu_5graph_22alignments_from_sa_tag_lambda(PyObject *__pyx_self, PyObject *__pyx_v_x) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("lambda (wrapper)", 0);
  __pyx_r = __pyx_lambda_funcdef_lambda(__pyx_self, ((PyObject *)__pyx_v_x));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_lambda_funcdef_lambda(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("lambda", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_x, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 754, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.alignments_from_sa_tag.lambda", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":717
 * 
 * 
 * cdef alignments_from_sa_tag(r, gettid, thresh, paired_end, mapq_thresh):             # <<<<<<<<<<<<<<
 *     # Puts other alignments in order of query position, gets index of the current alignment
 *     cdef int query_length = r.infer_read_length()  # Note, this also counts hard-clips
 */

static PyObject *__pyx_f_5dysgu_5graph_alignments_from_sa_tag(PyObject *__pyx_v_r, PyObject *__pyx_v_gettid, CYTHON_UNUSED PyObject *__pyx_v_thresh, CYTHON_UNUSED PyObject *__pyx_v_paired_end, CYTHON_UNUSED PyObject *__pyx_v_mapq_thresh) {
  int __pyx_v_query_length;
  int __pyx_v_chrom2;
  int __pyx_v_start_pos2;
  int __pyx_v_query_start;
  int __pyx_v_query_end;
  int __pyx_v_ref_start;
  int __pyx_v_ref_end;
  int __pyx_v_start_temp;
  CYTHON_UNUSED int __pyx_v_aln_start;
  CYTHON_UNUSED int __pyx_v_aln_end;
  PyObject *__pyx_v_current_strand = NULL;
  PyObject *__pyx_v_query_aligns = NULL;
  CYTHON_UNUSED PyObject *__pyx_v_aln_chrom = NULL;
  PyObject *__pyx_v_sa_block = NULL;
  PyObject *__pyx_v_sa = NULL;
  PyObject *__pyx_v_mq = NULL;
  PyObject *__pyx_v_strand = NULL;
  CYTHON_UNUSED PyObject *__pyx_v_cigar = NULL;
  PyObject *__pyx_v_matches = NULL;
  int __pyx_v_index;
  PyObject *__pyx_7genexpr__pyx_v_slen = NULL;
  PyObject *__pyx_7genexpr__pyx_v_opp = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  Py_ssize_t __pyx_t_7;
  PyObject *(*__pyx_t_8)(PyObject *);
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  PyObject *__pyx_t_11 = NULL;
  Py_ssize_t __pyx_t_12;
  PyObject *(*__pyx_t_13)(PyObject *);
  PyObject *(*__pyx_t_14)(PyObject *);
  int __pyx_t_15;
  int __pyx_t_16;
  int __pyx_t_17;
  PyObject *__pyx_t_18 = NULL;
  int __pyx_t_19;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("alignments_from_sa_tag", 0);

  /* "dysgu/graph.pyx":719
 * cdef alignments_from_sa_tag(r, gettid, thresh, paired_end, mapq_thresh):
 *     # Puts other alignments in order of query position, gets index of the current alignment
 *     cdef int query_length = r.infer_read_length()  # Note, this also counts hard-clips             # <<<<<<<<<<<<<<
 *     cdef int chrom2, start_pos2, query_start, query_end, ref_start, ref_end, start_temp, aln_start, aln_end
 * 
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_infer_read_length); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 719, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_3)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_3);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
    }
  }
  __pyx_t_1 = (__pyx_t_3) ? __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3) : __Pyx_PyObject_CallNoArg(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 719, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 719, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_query_length = __pyx_t_4;

  /* "dysgu/graph.pyx":722
 *     cdef int chrom2, start_pos2, query_start, query_end, ref_start, ref_end, start_temp, aln_start, aln_end
 * 
 *     current_strand = "-" if r.flag & 16 else "+"             # <<<<<<<<<<<<<<
 *     query_aligns = [get_query_pos_from_cigartuples(r)]
 *     aln_start = query_aligns[0][2]
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_flag); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 722, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyInt_AndObjC(__pyx_t_2, __pyx_int_16, 16, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 722, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 722, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (__pyx_t_5) {
    __Pyx_INCREF(__pyx_kp_u__7);
    __pyx_t_1 = __pyx_kp_u__7;
  } else {
    __Pyx_INCREF(__pyx_kp_u__8);
    __pyx_t_1 = __pyx_kp_u__8;
  }
  __pyx_v_current_strand = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":723
 * 
 *     current_strand = "-" if r.flag & 16 else "+"
 *     query_aligns = [get_query_pos_from_cigartuples(r)]             # <<<<<<<<<<<<<<
 *     aln_start = query_aligns[0][2]
 *     aln_end = query_aligns[0][3]
 */
  __pyx_t_1 = __pyx_f_5dysgu_5graph_get_query_pos_from_cigartuples(__pyx_v_r); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 723, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_3 = PyList_New(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 723, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_1);
  PyList_SET_ITEM(__pyx_t_3, 0, __pyx_t_1);
  __pyx_t_1 = 0;
  __pyx_v_query_aligns = __pyx_t_3;
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":724
 *     current_strand = "-" if r.flag & 16 else "+"
 *     query_aligns = [get_query_pos_from_cigartuples(r)]
 *     aln_start = query_aligns[0][2]             # <<<<<<<<<<<<<<
 *     aln_end = query_aligns[0][3]
 *     aln_chrom = r.rname
 */
  __pyx_t_3 = __Pyx_GetItemInt(__pyx_v_query_aligns, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 724, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_3, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 724, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 724, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_aln_start = __pyx_t_4;

  /* "dysgu/graph.pyx":725
 *     query_aligns = [get_query_pos_from_cigartuples(r)]
 *     aln_start = query_aligns[0][2]
 *     aln_end = query_aligns[0][3]             # <<<<<<<<<<<<<<
 *     aln_chrom = r.rname
 * 
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_query_aligns, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 725, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_3 = __Pyx_GetItemInt(__pyx_t_1, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 725, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 725, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_aln_end = __pyx_t_4;

  /* "dysgu/graph.pyx":726
 *     aln_start = query_aligns[0][2]
 *     aln_end = query_aligns[0][3]
 *     aln_chrom = r.rname             # <<<<<<<<<<<<<<
 * 
 *     for sa_block in r.get_tag("SA").split(";"):
 */
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_rname); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 726, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_v_aln_chrom = __pyx_t_3;
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":728
 *     aln_chrom = r.rname
 * 
 *     for sa_block in r.get_tag("SA").split(";"):             # <<<<<<<<<<<<<<
 *         if sa_block == "":
 *             break  # End
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_get_tag); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 728, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_6 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_6)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
    }
  }
  __pyx_t_1 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_6, __pyx_n_u_SA) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_n_u_SA);
  __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 728, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_split); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 728, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_1 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_1)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_1);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
    }
  }
  __pyx_t_3 = (__pyx_t_1) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_1, __pyx_kp_u__9) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_kp_u__9);
  __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
  if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 728, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  if (likely(PyList_CheckExact(__pyx_t_3)) || PyTuple_CheckExact(__pyx_t_3)) {
    __pyx_t_2 = __pyx_t_3; __Pyx_INCREF(__pyx_t_2); __pyx_t_7 = 0;
    __pyx_t_8 = NULL;
  } else {
    __pyx_t_7 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 728, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_8 = Py_TYPE(__pyx_t_2)->tp_iternext; if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 728, __pyx_L1_error)
  }
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  for (;;) {
    if (likely(!__pyx_t_8)) {
      if (likely(PyList_CheckExact(__pyx_t_2))) {
        if (__pyx_t_7 >= PyList_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_3 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_7); __Pyx_INCREF(__pyx_t_3); __pyx_t_7++; if (unlikely(0 < 0)) __PYX_ERR(1, 728, __pyx_L1_error)
        #else
        __pyx_t_3 = PySequence_ITEM(__pyx_t_2, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 728, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        #endif
      } else {
        if (__pyx_t_7 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_7); __Pyx_INCREF(__pyx_t_3); __pyx_t_7++; if (unlikely(0 < 0)) __PYX_ERR(1, 728, __pyx_L1_error)
        #else
        __pyx_t_3 = PySequence_ITEM(__pyx_t_2, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 728, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        #endif
      }
    } else {
      __pyx_t_3 = __pyx_t_8(__pyx_t_2);
      if (unlikely(!__pyx_t_3)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 728, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_3);
    }
    __Pyx_XDECREF_SET(__pyx_v_sa_block, __pyx_t_3);
    __pyx_t_3 = 0;

    /* "dysgu/graph.pyx":729
 * 
 *     for sa_block in r.get_tag("SA").split(";"):
 *         if sa_block == "":             # <<<<<<<<<<<<<<
 *             break  # End
 * 
 */
    __pyx_t_5 = (__Pyx_PyUnicode_Equals(__pyx_v_sa_block, __pyx_kp_u__10, Py_EQ)); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 729, __pyx_L1_error)
    if (__pyx_t_5) {

      /* "dysgu/graph.pyx":730
 *     for sa_block in r.get_tag("SA").split(";"):
 *         if sa_block == "":
 *             break  # End             # <<<<<<<<<<<<<<
 * 
 *         sa = sa_block.split(",", 5)
 */
      goto __pyx_L4_break;

      /* "dysgu/graph.pyx":729
 * 
 *     for sa_block in r.get_tag("SA").split(";"):
 *         if sa_block == "":             # <<<<<<<<<<<<<<
 *             break  # End
 * 
 */
    }

    /* "dysgu/graph.pyx":732
 *             break  # End
 * 
 *         sa = sa_block.split(",", 5)             # <<<<<<<<<<<<<<
 *         mq = int(sa[4])  # filter by mapq at later stage
 *         chrom2 = gettid(sa[0])
 */
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_sa_block, __pyx_n_s_split); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 732, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_tuple__12, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 732, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_XDECREF_SET(__pyx_v_sa, __pyx_t_1);
    __pyx_t_1 = 0;

    /* "dysgu/graph.pyx":733
 * 
 *         sa = sa_block.split(",", 5)
 *         mq = int(sa[4])  # filter by mapq at later stage             # <<<<<<<<<<<<<<
 *         chrom2 = gettid(sa[0])
 *         start_pos2 = int(sa[1])
 */
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_sa, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 733, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __Pyx_PyNumber_Int(__pyx_t_1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 733, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_XDECREF_SET(__pyx_v_mq, __pyx_t_3);
    __pyx_t_3 = 0;

    /* "dysgu/graph.pyx":734
 *         sa = sa_block.split(",", 5)
 *         mq = int(sa[4])  # filter by mapq at later stage
 *         chrom2 = gettid(sa[0])             # <<<<<<<<<<<<<<
 *         start_pos2 = int(sa[1])
 *         strand = sa[2]
 */
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_sa, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 734, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_v_gettid);
    __pyx_t_6 = __pyx_v_gettid; __pyx_t_9 = NULL;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_6))) {
      __pyx_t_9 = PyMethod_GET_SELF(__pyx_t_6);
      if (likely(__pyx_t_9)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
        __Pyx_INCREF(__pyx_t_9);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_6, function);
      }
    }
    __pyx_t_3 = (__pyx_t_9) ? __Pyx_PyObject_Call2Args(__pyx_t_6, __pyx_t_9, __pyx_t_1) : __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_t_1);
    __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 734, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 734, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_chrom2 = __pyx_t_4;

    /* "dysgu/graph.pyx":735
 *         mq = int(sa[4])  # filter by mapq at later stage
 *         chrom2 = gettid(sa[0])
 *         start_pos2 = int(sa[1])             # <<<<<<<<<<<<<<
 *         strand = sa[2]
 *         cigar = sa[3]
 */
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_v_sa, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 735, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_6 = __Pyx_PyNumber_Int(__pyx_t_3); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 735, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 735, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_v_start_pos2 = __pyx_t_4;

    /* "dysgu/graph.pyx":736
 *         chrom2 = gettid(sa[0])
 *         start_pos2 = int(sa[1])
 *         strand = sa[2]             # <<<<<<<<<<<<<<
 *         cigar = sa[3]
 *         matches = [(int(slen), opp) for slen, opp in re.findall(r'(\d+)([A-Z]{1})', sa[3])]  # parse cigar
 */
    __pyx_t_6 = __Pyx_GetItemInt(__pyx_v_sa, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 736, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_XDECREF_SET(__pyx_v_strand, __pyx_t_6);
    __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":737
 *         start_pos2 = int(sa[1])
 *         strand = sa[2]
 *         cigar = sa[3]             # <<<<<<<<<<<<<<
 *         matches = [(int(slen), opp) for slen, opp in re.findall(r'(\d+)([A-Z]{1})', sa[3])]  # parse cigar
 * 
 */
    __pyx_t_6 = __Pyx_GetItemInt(__pyx_v_sa, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 737, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_XDECREF_SET(__pyx_v_cigar, __pyx_t_6);
    __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":738
 *         strand = sa[2]
 *         cigar = sa[3]
 *         matches = [(int(slen), opp) for slen, opp in re.findall(r'(\d+)([A-Z]{1})', sa[3])]  # parse cigar             # <<<<<<<<<<<<<<
 * 
 *         query_start, query_end, ref_start, ref_end = get_query_pos_from_cigarstring(matches, start_pos2) #, strand == current_strand)
 */
    { /* enter inner scope */
      __pyx_t_6 = PyList_New(0); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 738, __pyx_L8_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_re); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 738, __pyx_L8_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_findall); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 738, __pyx_L8_error)
      __Pyx_GOTREF(__pyx_t_9);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_sa, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 738, __pyx_L8_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_10 = NULL;
      __pyx_t_4 = 0;
      if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_9))) {
        __pyx_t_10 = PyMethod_GET_SELF(__pyx_t_9);
        if (likely(__pyx_t_10)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_9);
          __Pyx_INCREF(__pyx_t_10);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_9, function);
          __pyx_t_4 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_9)) {
        PyObject *__pyx_temp[3] = {__pyx_t_10, __pyx_kp_u_d_A_Z_1, __pyx_t_1};
        __pyx_t_3 = __Pyx_PyFunction_FastCall(__pyx_t_9, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
        __Pyx_GOTREF(__pyx_t_3);
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_9)) {
        PyObject *__pyx_temp[3] = {__pyx_t_10, __pyx_kp_u_d_A_Z_1, __pyx_t_1};
        __pyx_t_3 = __Pyx_PyCFunction_FastCall(__pyx_t_9, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
        __Pyx_GOTREF(__pyx_t_3);
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      } else
      #endif
      {
        __pyx_t_11 = PyTuple_New(2+__pyx_t_4); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_GOTREF(__pyx_t_11);
        if (__pyx_t_10) {
          __Pyx_GIVEREF(__pyx_t_10); PyTuple_SET_ITEM(__pyx_t_11, 0, __pyx_t_10); __pyx_t_10 = NULL;
        }
        __Pyx_INCREF(__pyx_kp_u_d_A_Z_1);
        __Pyx_GIVEREF(__pyx_kp_u_d_A_Z_1);
        PyTuple_SET_ITEM(__pyx_t_11, 0+__pyx_t_4, __pyx_kp_u_d_A_Z_1);
        __Pyx_GIVEREF(__pyx_t_1);
        PyTuple_SET_ITEM(__pyx_t_11, 1+__pyx_t_4, __pyx_t_1);
        __pyx_t_1 = 0;
        __pyx_t_3 = __Pyx_PyObject_Call(__pyx_t_9, __pyx_t_11, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_GOTREF(__pyx_t_3);
        __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
      }
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      if (likely(PyList_CheckExact(__pyx_t_3)) || PyTuple_CheckExact(__pyx_t_3)) {
        __pyx_t_9 = __pyx_t_3; __Pyx_INCREF(__pyx_t_9); __pyx_t_12 = 0;
        __pyx_t_13 = NULL;
      } else {
        __pyx_t_12 = -1; __pyx_t_9 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_GOTREF(__pyx_t_9);
        __pyx_t_13 = Py_TYPE(__pyx_t_9)->tp_iternext; if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 738, __pyx_L8_error)
      }
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      for (;;) {
        if (likely(!__pyx_t_13)) {
          if (likely(PyList_CheckExact(__pyx_t_9))) {
            if (__pyx_t_12 >= PyList_GET_SIZE(__pyx_t_9)) break;
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            __pyx_t_3 = PyList_GET_ITEM(__pyx_t_9, __pyx_t_12); __Pyx_INCREF(__pyx_t_3); __pyx_t_12++; if (unlikely(0 < 0)) __PYX_ERR(1, 738, __pyx_L8_error)
            #else
            __pyx_t_3 = PySequence_ITEM(__pyx_t_9, __pyx_t_12); __pyx_t_12++; if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 738, __pyx_L8_error)
            __Pyx_GOTREF(__pyx_t_3);
            #endif
          } else {
            if (__pyx_t_12 >= PyTuple_GET_SIZE(__pyx_t_9)) break;
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_9, __pyx_t_12); __Pyx_INCREF(__pyx_t_3); __pyx_t_12++; if (unlikely(0 < 0)) __PYX_ERR(1, 738, __pyx_L8_error)
            #else
            __pyx_t_3 = PySequence_ITEM(__pyx_t_9, __pyx_t_12); __pyx_t_12++; if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 738, __pyx_L8_error)
            __Pyx_GOTREF(__pyx_t_3);
            #endif
          }
        } else {
          __pyx_t_3 = __pyx_t_13(__pyx_t_9);
          if (unlikely(!__pyx_t_3)) {
            PyObject* exc_type = PyErr_Occurred();
            if (exc_type) {
              if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
              else __PYX_ERR(1, 738, __pyx_L8_error)
            }
            break;
          }
          __Pyx_GOTREF(__pyx_t_3);
        }
        if ((likely(PyTuple_CheckExact(__pyx_t_3))) || (PyList_CheckExact(__pyx_t_3))) {
          PyObject* sequence = __pyx_t_3;
          Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
          if (unlikely(size != 2)) {
            if (size > 2) __Pyx_RaiseTooManyValuesError(2);
            else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
            __PYX_ERR(1, 738, __pyx_L8_error)
          }
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          if (likely(PyTuple_CheckExact(sequence))) {
            __pyx_t_11 = PyTuple_GET_ITEM(sequence, 0); 
            __pyx_t_1 = PyTuple_GET_ITEM(sequence, 1); 
          } else {
            __pyx_t_11 = PyList_GET_ITEM(sequence, 0); 
            __pyx_t_1 = PyList_GET_ITEM(sequence, 1); 
          }
          __Pyx_INCREF(__pyx_t_11);
          __Pyx_INCREF(__pyx_t_1);
          #else
          __pyx_t_11 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 738, __pyx_L8_error)
          __Pyx_GOTREF(__pyx_t_11);
          __pyx_t_1 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 738, __pyx_L8_error)
          __Pyx_GOTREF(__pyx_t_1);
          #endif
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
        } else {
          Py_ssize_t index = -1;
          __pyx_t_10 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 738, __pyx_L8_error)
          __Pyx_GOTREF(__pyx_t_10);
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
          __pyx_t_14 = Py_TYPE(__pyx_t_10)->tp_iternext;
          index = 0; __pyx_t_11 = __pyx_t_14(__pyx_t_10); if (unlikely(!__pyx_t_11)) goto __pyx_L11_unpacking_failed;
          __Pyx_GOTREF(__pyx_t_11);
          index = 1; __pyx_t_1 = __pyx_t_14(__pyx_t_10); if (unlikely(!__pyx_t_1)) goto __pyx_L11_unpacking_failed;
          __Pyx_GOTREF(__pyx_t_1);
          if (__Pyx_IternextUnpackEndCheck(__pyx_t_14(__pyx_t_10), 2) < 0) __PYX_ERR(1, 738, __pyx_L8_error)
          __pyx_t_14 = NULL;
          __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
          goto __pyx_L12_unpacking_done;
          __pyx_L11_unpacking_failed:;
          __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
          __pyx_t_14 = NULL;
          if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
          __PYX_ERR(1, 738, __pyx_L8_error)
          __pyx_L12_unpacking_done:;
        }
        __Pyx_XDECREF_SET(__pyx_7genexpr__pyx_v_slen, __pyx_t_11);
        __pyx_t_11 = 0;
        __Pyx_XDECREF_SET(__pyx_7genexpr__pyx_v_opp, __pyx_t_1);
        __pyx_t_1 = 0;
        __pyx_t_3 = __Pyx_PyNumber_Int(__pyx_7genexpr__pyx_v_slen); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_GOTREF(__pyx_t_3);
        __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_GIVEREF(__pyx_t_3);
        PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_3);
        __Pyx_INCREF(__pyx_7genexpr__pyx_v_opp);
        __Pyx_GIVEREF(__pyx_7genexpr__pyx_v_opp);
        PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_7genexpr__pyx_v_opp);
        __pyx_t_3 = 0;
        if (unlikely(__Pyx_ListComp_Append(__pyx_t_6, (PyObject*)__pyx_t_1))) __PYX_ERR(1, 738, __pyx_L8_error)
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      }
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __Pyx_XDECREF(__pyx_7genexpr__pyx_v_opp); __pyx_7genexpr__pyx_v_opp = 0;
      __Pyx_XDECREF(__pyx_7genexpr__pyx_v_slen); __pyx_7genexpr__pyx_v_slen = 0;
      goto __pyx_L13_exit_scope;
      __pyx_L8_error:;
      __Pyx_XDECREF(__pyx_7genexpr__pyx_v_opp); __pyx_7genexpr__pyx_v_opp = 0;
      __Pyx_XDECREF(__pyx_7genexpr__pyx_v_slen); __pyx_7genexpr__pyx_v_slen = 0;
      goto __pyx_L1_error;
      __pyx_L13_exit_scope:;
    } /* exit inner scope */
    __Pyx_XDECREF_SET(__pyx_v_matches, ((PyObject*)__pyx_t_6));
    __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":740
 *         matches = [(int(slen), opp) for slen, opp in re.findall(r'(\d+)([A-Z]{1})', sa[3])]  # parse cigar
 * 
 *         query_start, query_end, ref_start, ref_end = get_query_pos_from_cigarstring(matches, start_pos2) #, strand == current_strand)             # <<<<<<<<<<<<<<
 * 
 *         if current_strand != strand:  # count from end
 */
    __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_start_pos2); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 740, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_9 = __pyx_f_5dysgu_5graph_get_query_pos_from_cigarstring(__pyx_v_matches, __pyx_t_6); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 740, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_9);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if ((likely(PyTuple_CheckExact(__pyx_t_9))) || (PyList_CheckExact(__pyx_t_9))) {
      PyObject* sequence = __pyx_t_9;
      Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
      if (unlikely(size != 4)) {
        if (size > 4) __Pyx_RaiseTooManyValuesError(4);
        else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
        __PYX_ERR(1, 740, __pyx_L1_error)
      }
      #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
      if (likely(PyTuple_CheckExact(sequence))) {
        __pyx_t_6 = PyTuple_GET_ITEM(sequence, 0); 
        __pyx_t_1 = PyTuple_GET_ITEM(sequence, 1); 
        __pyx_t_3 = PyTuple_GET_ITEM(sequence, 2); 
        __pyx_t_11 = PyTuple_GET_ITEM(sequence, 3); 
      } else {
        __pyx_t_6 = PyList_GET_ITEM(sequence, 0); 
        __pyx_t_1 = PyList_GET_ITEM(sequence, 1); 
        __pyx_t_3 = PyList_GET_ITEM(sequence, 2); 
        __pyx_t_11 = PyList_GET_ITEM(sequence, 3); 
      }
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(__pyx_t_1);
      __Pyx_INCREF(__pyx_t_3);
      __Pyx_INCREF(__pyx_t_11);
      #else
      {
        Py_ssize_t i;
        PyObject** temps[4] = {&__pyx_t_6,&__pyx_t_1,&__pyx_t_3,&__pyx_t_11};
        for (i=0; i < 4; i++) {
          PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) __PYX_ERR(1, 740, __pyx_L1_error)
          __Pyx_GOTREF(item);
          *(temps[i]) = item;
        }
      }
      #endif
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
    } else {
      Py_ssize_t index = -1;
      PyObject** temps[4] = {&__pyx_t_6,&__pyx_t_1,&__pyx_t_3,&__pyx_t_11};
      __pyx_t_10 = PyObject_GetIter(__pyx_t_9); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 740, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_10);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __pyx_t_14 = Py_TYPE(__pyx_t_10)->tp_iternext;
      for (index=0; index < 4; index++) {
        PyObject* item = __pyx_t_14(__pyx_t_10); if (unlikely(!item)) goto __pyx_L14_unpacking_failed;
        __Pyx_GOTREF(item);
        *(temps[index]) = item;
      }
      if (__Pyx_IternextUnpackEndCheck(__pyx_t_14(__pyx_t_10), 4) < 0) __PYX_ERR(1, 740, __pyx_L1_error)
      __pyx_t_14 = NULL;
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      goto __pyx_L15_unpacking_done;
      __pyx_L14_unpacking_failed:;
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __pyx_t_14 = NULL;
      if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
      __PYX_ERR(1, 740, __pyx_L1_error)
      __pyx_L15_unpacking_done:;
    }
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 740, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_15 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_15 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 740, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_16 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_16 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 740, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_17 = __Pyx_PyInt_As_int(__pyx_t_11); if (unlikely((__pyx_t_17 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 740, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
    __pyx_v_query_start = __pyx_t_4;
    __pyx_v_query_end = __pyx_t_15;
    __pyx_v_ref_start = __pyx_t_16;
    __pyx_v_ref_end = __pyx_t_17;

    /* "dysgu/graph.pyx":742
 *         query_start, query_end, ref_start, ref_end = get_query_pos_from_cigarstring(matches, start_pos2) #, strand == current_strand)
 * 
 *         if current_strand != strand:  # count from end             # <<<<<<<<<<<<<<
 *             start_temp = query_length - query_end
 *             query_end = start_temp + query_end - query_start
 */
    __pyx_t_5 = (__Pyx_PyUnicode_Equals(__pyx_v_current_strand, __pyx_v_strand, Py_NE)); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 742, __pyx_L1_error)
    if (__pyx_t_5) {

      /* "dysgu/graph.pyx":743
 * 
 *         if current_strand != strand:  # count from end
 *             start_temp = query_length - query_end             # <<<<<<<<<<<<<<
 *             query_end = start_temp + query_end - query_start
 *             query_start = start_temp
 */
      __pyx_v_start_temp = (__pyx_v_query_length - __pyx_v_query_end);

      /* "dysgu/graph.pyx":744
 *         if current_strand != strand:  # count from end
 *             start_temp = query_length - query_end
 *             query_end = start_temp + query_end - query_start             # <<<<<<<<<<<<<<
 *             query_start = start_temp
 * 
 */
      __pyx_v_query_end = ((__pyx_v_start_temp + __pyx_v_query_end) - __pyx_v_query_start);

      /* "dysgu/graph.pyx":745
 *             start_temp = query_length - query_end
 *             query_end = start_temp + query_end - query_start
 *             query_start = start_temp             # <<<<<<<<<<<<<<
 * 
 *         # If another local alignment is found use only this, usually corresponds to the other side of an insertion/dup
 */
      __pyx_v_query_start = __pyx_v_start_temp;

      /* "dysgu/graph.pyx":742
 *         query_start, query_end, ref_start, ref_end = get_query_pos_from_cigarstring(matches, start_pos2) #, strand == current_strand)
 * 
 *         if current_strand != strand:  # count from end             # <<<<<<<<<<<<<<
 *             start_temp = query_length - query_end
 *             query_end = start_temp + query_end - query_start
 */
    }

    /* "dysgu/graph.pyx":752
 *             # break
 * 
 *         query_aligns.append((query_start, query_end, ref_start, ref_end, chrom2, mq, strand == current_strand))             # <<<<<<<<<<<<<<
 * 
 *     query_aligns = sorted(query_aligns, key=lambda x: x[0])
 */
    __pyx_t_9 = __Pyx_PyInt_From_int(__pyx_v_query_start); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 752, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_9);
    __pyx_t_11 = __Pyx_PyInt_From_int(__pyx_v_query_end); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 752, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_11);
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_ref_start); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 752, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_ref_end); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 752, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_chrom2); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 752, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_10 = PyObject_RichCompare(__pyx_v_strand, __pyx_v_current_strand, Py_EQ); __Pyx_XGOTREF(__pyx_t_10); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 752, __pyx_L1_error)
    __pyx_t_18 = PyTuple_New(7); if (unlikely(!__pyx_t_18)) __PYX_ERR(1, 752, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_18);
    __Pyx_GIVEREF(__pyx_t_9);
    PyTuple_SET_ITEM(__pyx_t_18, 0, __pyx_t_9);
    __Pyx_GIVEREF(__pyx_t_11);
    PyTuple_SET_ITEM(__pyx_t_18, 1, __pyx_t_11);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_18, 2, __pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_18, 3, __pyx_t_1);
    __Pyx_GIVEREF(__pyx_t_6);
    PyTuple_SET_ITEM(__pyx_t_18, 4, __pyx_t_6);
    __Pyx_INCREF(__pyx_v_mq);
    __Pyx_GIVEREF(__pyx_v_mq);
    PyTuple_SET_ITEM(__pyx_t_18, 5, __pyx_v_mq);
    __Pyx_GIVEREF(__pyx_t_10);
    PyTuple_SET_ITEM(__pyx_t_18, 6, __pyx_t_10);
    __pyx_t_9 = 0;
    __pyx_t_11 = 0;
    __pyx_t_3 = 0;
    __pyx_t_1 = 0;
    __pyx_t_6 = 0;
    __pyx_t_10 = 0;
    __pyx_t_19 = __Pyx_PyObject_Append(__pyx_v_query_aligns, __pyx_t_18); if (unlikely(__pyx_t_19 == ((int)-1))) __PYX_ERR(1, 752, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_18); __pyx_t_18 = 0;

    /* "dysgu/graph.pyx":728
 *     aln_chrom = r.rname
 * 
 *     for sa_block in r.get_tag("SA").split(";"):             # <<<<<<<<<<<<<<
 *         if sa_block == "":
 *             break  # End
 */
  }
  __pyx_L4_break:;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":754
 *         query_aligns.append((query_start, query_end, ref_start, ref_end, chrom2, mq, strand == current_strand))
 * 
 *     query_aligns = sorted(query_aligns, key=lambda x: x[0])             # <<<<<<<<<<<<<<
 * 
 *     cdef int index = 0
 */
  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 754, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_INCREF(__pyx_v_query_aligns);
  __Pyx_GIVEREF(__pyx_v_query_aligns);
  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_v_query_aligns);
  __pyx_t_18 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_18)) __PYX_ERR(1, 754, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_18);
  __pyx_t_10 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_22alignments_from_sa_tag_lambda, 0, __pyx_n_s_alignments_from_sa_tag_locals_la, NULL, __pyx_n_s_dysgu_graph, __pyx_d, NULL); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 754, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_10);
  if (PyDict_SetItem(__pyx_t_18, __pyx_n_s_key, __pyx_t_10) < 0) __PYX_ERR(1, 754, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
  __pyx_t_10 = __Pyx_PyObject_Call(__pyx_builtin_sorted, __pyx_t_2, __pyx_t_18); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 754, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_10);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_18); __pyx_t_18 = 0;
  __Pyx_DECREF_SET(__pyx_v_query_aligns, __pyx_t_10);
  __pyx_t_10 = 0;

  /* "dysgu/graph.pyx":756
 *     query_aligns = sorted(query_aligns, key=lambda x: x[0])
 * 
 *     cdef int index = 0             # <<<<<<<<<<<<<<
 *     for index in range(len(query_aligns)):
 *         if query_aligns[index][-1] == "input":
 */
  __pyx_v_index = 0;

  /* "dysgu/graph.pyx":757
 * 
 *     cdef int index = 0
 *     for index in range(len(query_aligns)):             # <<<<<<<<<<<<<<
 *         if query_aligns[index][-1] == "input":
 *             break
 */
  __pyx_t_7 = PyObject_Length(__pyx_v_query_aligns); if (unlikely(__pyx_t_7 == ((Py_ssize_t)-1))) __PYX_ERR(1, 757, __pyx_L1_error)
  __pyx_t_12 = __pyx_t_7;
  for (__pyx_t_17 = 0; __pyx_t_17 < __pyx_t_12; __pyx_t_17+=1) {
    __pyx_v_index = __pyx_t_17;

    /* "dysgu/graph.pyx":758
 *     cdef int index = 0
 *     for index in range(len(query_aligns)):
 *         if query_aligns[index][-1] == "input":             # <<<<<<<<<<<<<<
 *             break
 * 
 */
    __pyx_t_10 = __Pyx_GetItemInt(__pyx_v_query_aligns, __pyx_v_index, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 758, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_10);
    __pyx_t_18 = __Pyx_GetItemInt(__pyx_t_10, -1L, long, 1, __Pyx_PyInt_From_long, 0, 1, 0); if (unlikely(!__pyx_t_18)) __PYX_ERR(1, 758, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_18);
    __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
    __pyx_t_5 = (__Pyx_PyUnicode_Equals(__pyx_t_18, __pyx_n_u_input, Py_EQ)); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 758, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_18); __pyx_t_18 = 0;
    if (__pyx_t_5) {

      /* "dysgu/graph.pyx":759
 *     for index in range(len(query_aligns)):
 *         if query_aligns[index][-1] == "input":
 *             break             # <<<<<<<<<<<<<<
 * 
 *     return query_aligns, index
 */
      goto __pyx_L18_break;

      /* "dysgu/graph.pyx":758
 *     cdef int index = 0
 *     for index in range(len(query_aligns)):
 *         if query_aligns[index][-1] == "input":             # <<<<<<<<<<<<<<
 *             break
 * 
 */
    }
  }
  __pyx_L18_break:;

  /* "dysgu/graph.pyx":761
 *             break
 * 
 *     return query_aligns, index             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_18 = __Pyx_PyInt_From_int(__pyx_v_index); if (unlikely(!__pyx_t_18)) __PYX_ERR(1, 761, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_18);
  __pyx_t_10 = PyTuple_New(2); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 761, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_10);
  __Pyx_INCREF(__pyx_v_query_aligns);
  __Pyx_GIVEREF(__pyx_v_query_aligns);
  PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_v_query_aligns);
  __Pyx_GIVEREF(__pyx_t_18);
  PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_18);
  __pyx_t_18 = 0;
  __pyx_r = __pyx_t_10;
  __pyx_t_10 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":717
 * 
 * 
 * cdef alignments_from_sa_tag(r, gettid, thresh, paired_end, mapq_thresh):             # <<<<<<<<<<<<<<
 *     # Puts other alignments in order of query position, gets index of the current alignment
 *     cdef int query_length = r.infer_read_length()  # Note, this also counts hard-clips
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_XDECREF(__pyx_t_11);
  __Pyx_XDECREF(__pyx_t_18);
  __Pyx_AddTraceback("dysgu.graph.alignments_from_sa_tag", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_current_strand);
  __Pyx_XDECREF(__pyx_v_query_aligns);
  __Pyx_XDECREF(__pyx_v_aln_chrom);
  __Pyx_XDECREF(__pyx_v_sa_block);
  __Pyx_XDECREF(__pyx_v_sa);
  __Pyx_XDECREF(__pyx_v_mq);
  __Pyx_XDECREF(__pyx_v_strand);
  __Pyx_XDECREF(__pyx_v_cigar);
  __Pyx_XDECREF(__pyx_v_matches);
  __Pyx_XDECREF(__pyx_7genexpr__pyx_v_slen);
  __Pyx_XDECREF(__pyx_7genexpr__pyx_v_opp);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":764
 * 
 * 
 * cdef connect_right(a, b, r, paired, max_dist, mq_thresh):             # <<<<<<<<<<<<<<
 *     event_pos = a[3]
 *     chrom = a[4]
 */

static PyObject *__pyx_f_5dysgu_5graph_connect_right(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_r, PyObject *__pyx_v_paired, PyObject *__pyx_v_max_dist, PyObject *__pyx_v_mq_thresh) {
  PyObject *__pyx_v_event_pos = NULL;
  PyObject *__pyx_v_chrom = NULL;
  PyObject *__pyx_v_pos2 = NULL;
  PyObject *__pyx_v_pos2_end = NULL;
  PyObject *__pyx_v_chrom2 = NULL;
  PyObject *__pyx_v_pos2_mq = NULL;
  PyObject *__pyx_v_same_strand = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_t_5;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("connect_right", 0);

  /* "dysgu/graph.pyx":765
 * 
 * cdef connect_right(a, b, r, paired, max_dist, mq_thresh):
 *     event_pos = a[3]             # <<<<<<<<<<<<<<
 *     chrom = a[4]
 *     pos2 = b[2]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_a, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 765, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_event_pos = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":766
 * cdef connect_right(a, b, r, paired, max_dist, mq_thresh):
 *     event_pos = a[3]
 *     chrom = a[4]             # <<<<<<<<<<<<<<
 *     pos2 = b[2]
 *     pos2_end = b[3]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_a, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 766, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_chrom = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":767
 *     event_pos = a[3]
 *     chrom = a[4]
 *     pos2 = b[2]             # <<<<<<<<<<<<<<
 *     pos2_end = b[3]
 *     chrom2 = b[4]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 767, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_pos2 = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":768
 *     chrom = a[4]
 *     pos2 = b[2]
 *     pos2_end = b[3]             # <<<<<<<<<<<<<<
 *     chrom2 = b[4]
 *     pos2_mq = b[5]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 768, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_pos2_end = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":769
 *     pos2 = b[2]
 *     pos2_end = b[3]
 *     chrom2 = b[4]             # <<<<<<<<<<<<<<
 *     pos2_mq = b[5]
 *     same_strand = b[6]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 769, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_chrom2 = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":770
 *     pos2_end = b[3]
 *     chrom2 = b[4]
 *     pos2_mq = b[5]             # <<<<<<<<<<<<<<
 *     same_strand = b[6]
 *     if pos2_mq < mq_thresh:
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 5, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 770, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_pos2_mq = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":771
 *     chrom2 = b[4]
 *     pos2_mq = b[5]
 *     same_strand = b[6]             # <<<<<<<<<<<<<<
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 6, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 771, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_same_strand = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":772
 *     pos2_mq = b[5]
 *     same_strand = b[6]
 *     if pos2_mq < mq_thresh:             # <<<<<<<<<<<<<<
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:
 */
  __pyx_t_1 = PyObject_RichCompare(__pyx_v_pos2_mq, __pyx_v_mq_thresh, Py_LT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 772, __pyx_L1_error)
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 772, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":773
 *     same_strand = b[6]
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND             # <<<<<<<<<<<<<<
 *     if paired:
 *         # If paired, and SA block fits between two normal primary alignments, and block is not local, then
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_1 = __Pyx_PyInt_From___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_e_5dysgu_5graph_BREAKEND); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 773, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = PyTuple_New(5); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 773, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_event_pos);
    __Pyx_GIVEREF(__pyx_v_event_pos);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_event_pos);
    __Pyx_INCREF(__pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_v_chrom);
    PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_chrom);
    __Pyx_INCREF(__pyx_v_event_pos);
    __Pyx_GIVEREF(__pyx_v_event_pos);
    PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_event_pos);
    __Pyx_INCREF(__pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_v_chrom);
    PyTuple_SET_ITEM(__pyx_t_3, 3, __pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_3, 4, __pyx_t_1);
    __pyx_t_1 = 0;
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":772
 *     pos2_mq = b[5]
 *     same_strand = b[6]
 *     if pos2_mq < mq_thresh:             # <<<<<<<<<<<<<<
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:
 */
  }

  /* "dysgu/graph.pyx":774
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:             # <<<<<<<<<<<<<<
 *         # If paired, and SA block fits between two normal primary alignments, and block is not local, then
 *         # ignore block and try and call insertion
 */
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_paired); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 774, __pyx_L1_error)
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":777
 *         # If paired, and SA block fits between two normal primary alignments, and block is not local, then
 *         # ignore block and try and call insertion
 *         if not r.flag & 2304 and \             # <<<<<<<<<<<<<<
 *             r.flag & 2 and r.pnext >= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):  # is primary, is proper pair. Use primary mate info, not SA
 */
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_flag); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 777, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = __Pyx_PyInt_AndObjC(__pyx_t_3, __pyx_int_2304, 0x900, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 777, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 777, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_5 = ((!__pyx_t_4) != 0);
    if (__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }

    /* "dysgu/graph.pyx":778
 *         # ignore block and try and call insertion
 *         if not r.flag & 2304 and \
 *             r.flag & 2 and r.pnext >= event_pos and \             # <<<<<<<<<<<<<<
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):  # is primary, is proper pair. Use primary mate info, not SA
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_flag); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 778, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __Pyx_PyInt_AndObjC(__pyx_t_1, __pyx_int_2, 2, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 778, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 778, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    if (__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_pnext); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 778, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = PyObject_RichCompare(__pyx_t_3, __pyx_v_event_pos, Py_GE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 778, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 778, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }

    /* "dysgu/graph.pyx":779
 *         if not r.flag & 2304 and \
 *             r.flag & 2 and r.pnext >= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):  # is primary, is proper pair. Use primary mate info, not SA             # <<<<<<<<<<<<<<
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 * 
 */
    __pyx_t_1 = PyObject_RichCompare(__pyx_v_chrom, __pyx_v_chrom2, Py_NE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 779, __pyx_L1_error)
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 779, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (!__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_1 = PyNumber_Subtract(__pyx_v_pos2, __pyx_v_event_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 779, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __Pyx_PyNumber_Absolute(__pyx_t_1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 779, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = PyObject_RichCompare(__pyx_t_3, __pyx_v_max_dist, Py_GT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 779, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 779, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_2 = __pyx_t_5;
    __pyx_L6_bool_binop_done:;

    /* "dysgu/graph.pyx":777
 *         # If paired, and SA block fits between two normal primary alignments, and block is not local, then
 *         # ignore block and try and call insertion
 *         if not r.flag & 2304 and \             # <<<<<<<<<<<<<<
 *             r.flag & 2 and r.pnext >= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):  # is primary, is proper pair. Use primary mate info, not SA
 */
    if (__pyx_t_2) {

      /* "dysgu/graph.pyx":780
 *             r.flag & 2 and r.pnext >= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):  # is primary, is proper pair. Use primary mate info, not SA
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND             # <<<<<<<<<<<<<<
 * 
 *     if same_strand:
 */
      __Pyx_XDECREF(__pyx_r);
      __pyx_t_1 = __Pyx_PyInt_From___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_e_5dysgu_5graph_BREAKEND); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 780, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_3 = PyTuple_New(5); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 780, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_INCREF(__pyx_v_event_pos);
      __Pyx_GIVEREF(__pyx_v_event_pos);
      PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_event_pos);
      __Pyx_INCREF(__pyx_v_chrom);
      __Pyx_GIVEREF(__pyx_v_chrom);
      PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_chrom);
      __Pyx_INCREF(__pyx_v_event_pos);
      __Pyx_GIVEREF(__pyx_v_event_pos);
      PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_event_pos);
      __Pyx_INCREF(__pyx_v_chrom);
      __Pyx_GIVEREF(__pyx_v_chrom);
      PyTuple_SET_ITEM(__pyx_t_3, 3, __pyx_v_chrom);
      __Pyx_GIVEREF(__pyx_t_1);
      PyTuple_SET_ITEM(__pyx_t_3, 4, __pyx_t_1);
      __pyx_t_1 = 0;
      __pyx_r = __pyx_t_3;
      __pyx_t_3 = 0;
      goto __pyx_L0;

      /* "dysgu/graph.pyx":777
 *         # If paired, and SA block fits between two normal primary alignments, and block is not local, then
 *         # ignore block and try and call insertion
 *         if not r.flag & 2304 and \             # <<<<<<<<<<<<<<
 *             r.flag & 2 and r.pnext >= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):  # is primary, is proper pair. Use primary mate info, not SA
 */
    }

    /* "dysgu/graph.pyx":774
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:             # <<<<<<<<<<<<<<
 *         # If paired, and SA block fits between two normal primary alignments, and block is not local, then
 *         # ignore block and try and call insertion
 */
  }

  /* "dysgu/graph.pyx":782
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 * 
 *     if same_strand:             # <<<<<<<<<<<<<<
 *         return event_pos, chrom, pos2, chrom2, 0
 *     else:
 */
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_same_strand); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 782, __pyx_L1_error)
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":783
 * 
 *     if same_strand:
 *         return event_pos, chrom, pos2, chrom2, 0             # <<<<<<<<<<<<<<
 *     else:
 *         return event_pos, chrom, pos2_end, chrom2, 0
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_3 = PyTuple_New(5); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 783, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_event_pos);
    __Pyx_GIVEREF(__pyx_v_event_pos);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_event_pos);
    __Pyx_INCREF(__pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_v_chrom);
    PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_chrom);
    __Pyx_INCREF(__pyx_v_pos2);
    __Pyx_GIVEREF(__pyx_v_pos2);
    PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_pos2);
    __Pyx_INCREF(__pyx_v_chrom2);
    __Pyx_GIVEREF(__pyx_v_chrom2);
    PyTuple_SET_ITEM(__pyx_t_3, 3, __pyx_v_chrom2);
    __Pyx_INCREF(__pyx_int_0);
    __Pyx_GIVEREF(__pyx_int_0);
    PyTuple_SET_ITEM(__pyx_t_3, 4, __pyx_int_0);
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":782
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 * 
 *     if same_strand:             # <<<<<<<<<<<<<<
 *         return event_pos, chrom, pos2, chrom2, 0
 *     else:
 */
  }

  /* "dysgu/graph.pyx":785
 *         return event_pos, chrom, pos2, chrom2, 0
 *     else:
 *         return event_pos, chrom, pos2_end, chrom2, 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_3 = PyTuple_New(5); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 785, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_event_pos);
    __Pyx_GIVEREF(__pyx_v_event_pos);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_event_pos);
    __Pyx_INCREF(__pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_v_chrom);
    PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_chrom);
    __Pyx_INCREF(__pyx_v_pos2_end);
    __Pyx_GIVEREF(__pyx_v_pos2_end);
    PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_pos2_end);
    __Pyx_INCREF(__pyx_v_chrom2);
    __Pyx_GIVEREF(__pyx_v_chrom2);
    PyTuple_SET_ITEM(__pyx_t_3, 3, __pyx_v_chrom2);
    __Pyx_INCREF(__pyx_int_0);
    __Pyx_GIVEREF(__pyx_int_0);
    PyTuple_SET_ITEM(__pyx_t_3, 4, __pyx_int_0);
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;
  }

  /* "dysgu/graph.pyx":764
 * 
 * 
 * cdef connect_right(a, b, r, paired, max_dist, mq_thresh):             # <<<<<<<<<<<<<<
 *     event_pos = a[3]
 *     chrom = a[4]
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("dysgu.graph.connect_right", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_event_pos);
  __Pyx_XDECREF(__pyx_v_chrom);
  __Pyx_XDECREF(__pyx_v_pos2);
  __Pyx_XDECREF(__pyx_v_pos2_end);
  __Pyx_XDECREF(__pyx_v_chrom2);
  __Pyx_XDECREF(__pyx_v_pos2_mq);
  __Pyx_XDECREF(__pyx_v_same_strand);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":788
 * 
 * 
 * cdef connect_left(a, b, r, paired, max_dist, mq_thresh):             # <<<<<<<<<<<<<<
 *     event_pos = a[2]
 *     chrom = a[4]
 */

static PyObject *__pyx_f_5dysgu_5graph_connect_left(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_r, PyObject *__pyx_v_paired, PyObject *__pyx_v_max_dist, PyObject *__pyx_v_mq_thresh) {
  PyObject *__pyx_v_event_pos = NULL;
  PyObject *__pyx_v_chrom = NULL;
  PyObject *__pyx_v_pos2 = NULL;
  PyObject *__pyx_v_chrom2 = NULL;
  PyObject *__pyx_v_pos2_mq = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_t_5;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("connect_left", 0);

  /* "dysgu/graph.pyx":789
 * 
 * cdef connect_left(a, b, r, paired, max_dist, mq_thresh):
 *     event_pos = a[2]             # <<<<<<<<<<<<<<
 *     chrom = a[4]
 *     pos2 = b[3]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_a, 2, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 789, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_event_pos = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":790
 * cdef connect_left(a, b, r, paired, max_dist, mq_thresh):
 *     event_pos = a[2]
 *     chrom = a[4]             # <<<<<<<<<<<<<<
 *     pos2 = b[3]
 *     chrom2 = b[4]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_a, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 790, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_chrom = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":791
 *     event_pos = a[2]
 *     chrom = a[4]
 *     pos2 = b[3]             # <<<<<<<<<<<<<<
 *     chrom2 = b[4]
 *     pos2_mq = b[5]
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 3, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 791, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_pos2 = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":792
 *     chrom = a[4]
 *     pos2 = b[3]
 *     chrom2 = b[4]             # <<<<<<<<<<<<<<
 *     pos2_mq = b[5]
 *     if pos2_mq < mq_thresh:
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 4, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 792, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_chrom2 = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":793
 *     pos2 = b[3]
 *     chrom2 = b[4]
 *     pos2_mq = b[5]             # <<<<<<<<<<<<<<
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_b, 5, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 793, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_pos2_mq = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":794
 *     chrom2 = b[4]
 *     pos2_mq = b[5]
 *     if pos2_mq < mq_thresh:             # <<<<<<<<<<<<<<
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:
 */
  __pyx_t_1 = PyObject_RichCompare(__pyx_v_pos2_mq, __pyx_v_mq_thresh, Py_LT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 794, __pyx_L1_error)
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 794, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":795
 *     pos2_mq = b[5]
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND             # <<<<<<<<<<<<<<
 *     if paired:
 *         if not r.flag & 2304 and \
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_1 = __Pyx_PyInt_From___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_e_5dysgu_5graph_BREAKEND); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 795, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = PyTuple_New(5); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 795, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_event_pos);
    __Pyx_GIVEREF(__pyx_v_event_pos);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_event_pos);
    __Pyx_INCREF(__pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_v_chrom);
    PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_chrom);
    __Pyx_INCREF(__pyx_v_event_pos);
    __Pyx_GIVEREF(__pyx_v_event_pos);
    PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_event_pos);
    __Pyx_INCREF(__pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_v_chrom);
    PyTuple_SET_ITEM(__pyx_t_3, 3, __pyx_v_chrom);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_3, 4, __pyx_t_1);
    __pyx_t_1 = 0;
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":794
 *     chrom2 = b[4]
 *     pos2_mq = b[5]
 *     if pos2_mq < mq_thresh:             # <<<<<<<<<<<<<<
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:
 */
  }

  /* "dysgu/graph.pyx":796
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:             # <<<<<<<<<<<<<<
 *         if not r.flag & 2304 and \
 *             r.flag & 2 and r.pnext <= event_pos and \
 */
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_paired); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 796, __pyx_L1_error)
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":797
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:
 *         if not r.flag & 2304 and \             # <<<<<<<<<<<<<<
 *             r.flag & 2 and r.pnext <= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):
 */
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_flag); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 797, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = __Pyx_PyInt_AndObjC(__pyx_t_3, __pyx_int_2304, 0x900, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 797, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 797, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_5 = ((!__pyx_t_4) != 0);
    if (__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }

    /* "dysgu/graph.pyx":798
 *     if paired:
 *         if not r.flag & 2304 and \
 *             r.flag & 2 and r.pnext <= event_pos and \             # <<<<<<<<<<<<<<
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_flag); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 798, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __Pyx_PyInt_AndObjC(__pyx_t_1, __pyx_int_2, 2, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 798, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 798, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    if (__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_pnext); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 798, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = PyObject_RichCompare(__pyx_t_3, __pyx_v_event_pos, Py_LE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 798, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 798, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }

    /* "dysgu/graph.pyx":799
 *         if not r.flag & 2304 and \
 *             r.flag & 2 and r.pnext <= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):             # <<<<<<<<<<<<<<
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 * 
 */
    __pyx_t_1 = PyObject_RichCompare(__pyx_v_chrom, __pyx_v_chrom2, Py_NE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 799, __pyx_L1_error)
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 799, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (!__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_1 = PyNumber_Subtract(__pyx_v_pos2, __pyx_v_event_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 799, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __Pyx_PyNumber_Absolute(__pyx_t_1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 799, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = PyObject_RichCompare(__pyx_t_3, __pyx_v_max_dist, Py_GT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 799, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 799, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_2 = __pyx_t_5;
    __pyx_L6_bool_binop_done:;

    /* "dysgu/graph.pyx":797
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:
 *         if not r.flag & 2304 and \             # <<<<<<<<<<<<<<
 *             r.flag & 2 and r.pnext <= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):
 */
    if (__pyx_t_2) {

      /* "dysgu/graph.pyx":800
 *             r.flag & 2 and r.pnext <= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND             # <<<<<<<<<<<<<<
 * 
 *     return event_pos, chrom, pos2, chrom2, 0
 */
      __Pyx_XDECREF(__pyx_r);
      __pyx_t_1 = __Pyx_PyInt_From___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_e_5dysgu_5graph_BREAKEND); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 800, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_3 = PyTuple_New(5); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 800, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_INCREF(__pyx_v_event_pos);
      __Pyx_GIVEREF(__pyx_v_event_pos);
      PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_event_pos);
      __Pyx_INCREF(__pyx_v_chrom);
      __Pyx_GIVEREF(__pyx_v_chrom);
      PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_chrom);
      __Pyx_INCREF(__pyx_v_event_pos);
      __Pyx_GIVEREF(__pyx_v_event_pos);
      PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_event_pos);
      __Pyx_INCREF(__pyx_v_chrom);
      __Pyx_GIVEREF(__pyx_v_chrom);
      PyTuple_SET_ITEM(__pyx_t_3, 3, __pyx_v_chrom);
      __Pyx_GIVEREF(__pyx_t_1);
      PyTuple_SET_ITEM(__pyx_t_3, 4, __pyx_t_1);
      __pyx_t_1 = 0;
      __pyx_r = __pyx_t_3;
      __pyx_t_3 = 0;
      goto __pyx_L0;

      /* "dysgu/graph.pyx":797
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:
 *         if not r.flag & 2304 and \             # <<<<<<<<<<<<<<
 *             r.flag & 2 and r.pnext <= event_pos and \
 *             (chrom != chrom2 or abs(pos2 - event_pos) > max_dist):
 */
    }

    /* "dysgu/graph.pyx":796
 *     if pos2_mq < mq_thresh:
 *         return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 *     if paired:             # <<<<<<<<<<<<<<
 *         if not r.flag & 2304 and \
 *             r.flag & 2 and r.pnext <= event_pos and \
 */
  }

  /* "dysgu/graph.pyx":802
 *             return event_pos, chrom, event_pos, chrom, ReadEnum_t.BREAKEND
 * 
 *     return event_pos, chrom, pos2, chrom2, 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_3 = PyTuple_New(5); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 802, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(__pyx_v_event_pos);
  __Pyx_GIVEREF(__pyx_v_event_pos);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_event_pos);
  __Pyx_INCREF(__pyx_v_chrom);
  __Pyx_GIVEREF(__pyx_v_chrom);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_chrom);
  __Pyx_INCREF(__pyx_v_pos2);
  __Pyx_GIVEREF(__pyx_v_pos2);
  PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_v_pos2);
  __Pyx_INCREF(__pyx_v_chrom2);
  __Pyx_GIVEREF(__pyx_v_chrom2);
  PyTuple_SET_ITEM(__pyx_t_3, 3, __pyx_v_chrom2);
  __Pyx_INCREF(__pyx_int_0);
  __Pyx_GIVEREF(__pyx_int_0);
  PyTuple_SET_ITEM(__pyx_t_3, 4, __pyx_int_0);
  __pyx_r = __pyx_t_3;
  __pyx_t_3 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":788
 * 
 * 
 * cdef connect_left(a, b, r, paired, max_dist, mq_thresh):             # <<<<<<<<<<<<<<
 *     event_pos = a[2]
 *     chrom = a[4]
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("dysgu.graph.connect_left", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_event_pos);
  __Pyx_XDECREF(__pyx_v_chrom);
  __Pyx_XDECREF(__pyx_v_pos2);
  __Pyx_XDECREF(__pyx_v_chrom2);
  __Pyx_XDECREF(__pyx_v_pos2_mq);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":805
 * 
 * 
 * cdef int cluster_clipped(G, r, ClipScoper_t clip_scope, chrom, pos, node_name):             # <<<<<<<<<<<<<<
 * 
 *     cdef int other_node
 */

static int __pyx_f_5dysgu_5graph_cluster_clipped(PyObject *__pyx_v_G, PyObject *__pyx_v_r, __pyx_t_5dysgu_5graph_ClipScoper_t __pyx_v_clip_scope, PyObject *__pyx_v_chrom, PyObject *__pyx_v_pos, PyObject *__pyx_v_node_name) {
  int __pyx_v_other_node;
  int __pyx_v_count;
  robin_hood::unordered_set<int>  __pyx_v_clustered_nodes;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  robin_hood::unordered_set<int> ::iterator __pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  int __pyx_t_11;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("cluster_clipped", 0);

  /* "dysgu/graph.pyx":808
 * 
 *     cdef int other_node
 *     cdef int count = 0             # <<<<<<<<<<<<<<
 *     cdef unordered_set[int] clustered_nodes
 *     clip_scope.update(r, node_name, chrom, pos, clustered_nodes)
 */
  __pyx_v_count = 0;

  /* "dysgu/graph.pyx":810
 *     cdef int count = 0
 *     cdef unordered_set[int] clustered_nodes
 *     clip_scope.update(r, node_name, chrom, pos, clustered_nodes)             # <<<<<<<<<<<<<<
 *     if not clustered_nodes.empty():
 *         for other_node in clustered_nodes:
 */
  __pyx_t_1 = __Pyx_PyInt_As_int(__pyx_v_node_name); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 810, __pyx_L1_error)
  __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_v_chrom); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 810, __pyx_L1_error)
  __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_v_pos); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 810, __pyx_L1_error)
  ((struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper *)__pyx_v_clip_scope->__pyx_vtab)->update(((struct __pyx_obj_5dysgu_5graph_ClipScoper *)__pyx_v_clip_scope), __pyx_v_r, __pyx_t_1, __pyx_t_2, __pyx_t_3, __pyx_v_clustered_nodes);

  /* "dysgu/graph.pyx":811
 *     cdef unordered_set[int] clustered_nodes
 *     clip_scope.update(r, node_name, chrom, pos, clustered_nodes)
 *     if not clustered_nodes.empty():             # <<<<<<<<<<<<<<
 *         for other_node in clustered_nodes:
 * 
 */
  __pyx_t_4 = ((!(__pyx_v_clustered_nodes.empty() != 0)) != 0);
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":812
 *     clip_scope.update(r, node_name, chrom, pos, clustered_nodes)
 *     if not clustered_nodes.empty():
 *         for other_node in clustered_nodes:             # <<<<<<<<<<<<<<
 * 
 *             if not G.hasEdge(node_name, other_node):
 */
    __pyx_t_5 = __pyx_v_clustered_nodes.begin();
    for (;;) {
      if (!(__pyx_t_5 != __pyx_v_clustered_nodes.end())) break;
      __pyx_t_3 = *__pyx_t_5;
      ++__pyx_t_5;
      __pyx_v_other_node = __pyx_t_3;

      /* "dysgu/graph.pyx":814
 *         for other_node in clustered_nodes:
 * 
 *             if not G.hasEdge(node_name, other_node):             # <<<<<<<<<<<<<<
 *                 G.addEdge(node_name, other_node, 2)
 *                 count += 1
 */
      __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_hasEdge); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 814, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_other_node); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 814, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_9 = NULL;
      __pyx_t_3 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_7))) {
        __pyx_t_9 = PyMethod_GET_SELF(__pyx_t_7);
        if (likely(__pyx_t_9)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
          __Pyx_INCREF(__pyx_t_9);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_7, function);
          __pyx_t_3 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_7)) {
        PyObject *__pyx_temp[3] = {__pyx_t_9, __pyx_v_node_name, __pyx_t_8};
        __pyx_t_6 = __Pyx_PyFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_3, 2+__pyx_t_3); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 814, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
        __Pyx_GOTREF(__pyx_t_6);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_7)) {
        PyObject *__pyx_temp[3] = {__pyx_t_9, __pyx_v_node_name, __pyx_t_8};
        __pyx_t_6 = __Pyx_PyCFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_3, 2+__pyx_t_3); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 814, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
        __Pyx_GOTREF(__pyx_t_6);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      {
        __pyx_t_10 = PyTuple_New(2+__pyx_t_3); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 814, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_10);
        if (__pyx_t_9) {
          __Pyx_GIVEREF(__pyx_t_9); PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_9); __pyx_t_9 = NULL;
        }
        __Pyx_INCREF(__pyx_v_node_name);
        __Pyx_GIVEREF(__pyx_v_node_name);
        PyTuple_SET_ITEM(__pyx_t_10, 0+__pyx_t_3, __pyx_v_node_name);
        __Pyx_GIVEREF(__pyx_t_8);
        PyTuple_SET_ITEM(__pyx_t_10, 1+__pyx_t_3, __pyx_t_8);
        __pyx_t_8 = 0;
        __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_10, NULL); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 814, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_6);
        __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      }
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 814, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      __pyx_t_11 = ((!__pyx_t_4) != 0);
      if (__pyx_t_11) {

        /* "dysgu/graph.pyx":815
 * 
 *             if not G.hasEdge(node_name, other_node):
 *                 G.addEdge(node_name, other_node, 2)             # <<<<<<<<<<<<<<
 *                 count += 1
 *     return count
 */
        __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addEdge); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 815, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __pyx_t_10 = __Pyx_PyInt_From_int(__pyx_v_other_node); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 815, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_10);
        __pyx_t_8 = NULL;
        __pyx_t_3 = 0;
        if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_7))) {
          __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_7);
          if (likely(__pyx_t_8)) {
            PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
            __Pyx_INCREF(__pyx_t_8);
            __Pyx_INCREF(function);
            __Pyx_DECREF_SET(__pyx_t_7, function);
            __pyx_t_3 = 1;
          }
        }
        #if CYTHON_FAST_PYCALL
        if (PyFunction_Check(__pyx_t_7)) {
          PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_v_node_name, __pyx_t_10, __pyx_int_2};
          __pyx_t_6 = __Pyx_PyFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_3, 3+__pyx_t_3); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 815, __pyx_L1_error)
          __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
          __Pyx_GOTREF(__pyx_t_6);
          __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
        } else
        #endif
        #if CYTHON_FAST_PYCCALL
        if (__Pyx_PyFastCFunction_Check(__pyx_t_7)) {
          PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_v_node_name, __pyx_t_10, __pyx_int_2};
          __pyx_t_6 = __Pyx_PyCFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_3, 3+__pyx_t_3); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 815, __pyx_L1_error)
          __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
          __Pyx_GOTREF(__pyx_t_6);
          __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
        } else
        #endif
        {
          __pyx_t_9 = PyTuple_New(3+__pyx_t_3); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 815, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_9);
          if (__pyx_t_8) {
            __Pyx_GIVEREF(__pyx_t_8); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_8); __pyx_t_8 = NULL;
          }
          __Pyx_INCREF(__pyx_v_node_name);
          __Pyx_GIVEREF(__pyx_v_node_name);
          PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_3, __pyx_v_node_name);
          __Pyx_GIVEREF(__pyx_t_10);
          PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_3, __pyx_t_10);
          __Pyx_INCREF(__pyx_int_2);
          __Pyx_GIVEREF(__pyx_int_2);
          PyTuple_SET_ITEM(__pyx_t_9, 2+__pyx_t_3, __pyx_int_2);
          __pyx_t_10 = 0;
          __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_9, NULL); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 815, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_6);
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        }
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;

        /* "dysgu/graph.pyx":816
 *             if not G.hasEdge(node_name, other_node):
 *                 G.addEdge(node_name, other_node, 2)
 *                 count += 1             # <<<<<<<<<<<<<<
 *     return count
 * 
 */
        __pyx_v_count = (__pyx_v_count + 1);

        /* "dysgu/graph.pyx":814
 *         for other_node in clustered_nodes:
 * 
 *             if not G.hasEdge(node_name, other_node):             # <<<<<<<<<<<<<<
 *                 G.addEdge(node_name, other_node, 2)
 *                 count += 1
 */
      }

      /* "dysgu/graph.pyx":812
 *     clip_scope.update(r, node_name, chrom, pos, clustered_nodes)
 *     if not clustered_nodes.empty():
 *         for other_node in clustered_nodes:             # <<<<<<<<<<<<<<
 * 
 *             if not G.hasEdge(node_name, other_node):
 */
    }

    /* "dysgu/graph.pyx":811
 *     cdef unordered_set[int] clustered_nodes
 *     clip_scope.update(r, node_name, chrom, pos, clustered_nodes)
 *     if not clustered_nodes.empty():             # <<<<<<<<<<<<<<
 *         for other_node in clustered_nodes:
 * 
 */
  }

  /* "dysgu/graph.pyx":817
 *                 G.addEdge(node_name, other_node, 2)
 *                 count += 1
 *     return count             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_count;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":805
 * 
 * 
 * cdef int cluster_clipped(G, r, ClipScoper_t clip_scope, chrom, pos, node_name):             # <<<<<<<<<<<<<<
 * 
 *     cdef int other_node
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_WriteUnraisable("dysgu.graph.cluster_clipped", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":820
 * 
 * 
 * cdef void add_to_graph(G, AlignedSegment r, PairedEndScoper_t pe_scope, TemplateEdges_t template_edges,             # <<<<<<<<<<<<<<
 *                        NodeToName node_to_name, genome_scanner,
 *                        int flag, int chrom, tell, int cigar_index, int event_pos,
 */

static void __pyx_f_5dysgu_5graph_add_to_graph(PyObject *__pyx_v_G, struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *__pyx_v_r, __pyx_t_5dysgu_5graph_PairedEndScoper_t __pyx_v_pe_scope, __pyx_t_5dysgu_5graph_TemplateEdges_t __pyx_v_template_edges, struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_node_to_name, PyObject *__pyx_v_genome_scanner, int __pyx_v_flag, int __pyx_v_chrom, PyObject *__pyx_v_tell, int __pyx_v_cigar_index, int __pyx_v_event_pos, int __pyx_v_chrom2, int __pyx_v_pos2, __pyx_t_5dysgu_5graph_ClipScoper_t __pyx_v_clip_scope, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum, int __pyx_v_p1_overlaps, int __pyx_v_p2_overlaps, int __pyx_v_mm_only, int __pyx_v_clip_l, PyObject *__pyx_v_site_adder, int __pyx_v_length_from_cigar, int __pyx_v_trust_ins_len) {
  int __pyx_v_other_node;
  std::vector<int>  __pyx_v_other_nodes;
  int __pyx_v_node_name;
  uint64_t __pyx_v_v;
  CYTHON_UNUSED int __pyx_v_count_sc_edges;
  int __pyx_v_bnd_site_node;
  int __pyx_v_bnd_site_node2;
  CYTHON_UNUSED int __pyx_v_both_overlap;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  Py_ssize_t __pyx_t_5;
  long __pyx_t_6;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_t_9;
  int __pyx_t_10;
  std::vector<int> ::iterator __pyx_t_11;
  PyObject *__pyx_t_12 = NULL;
  int __pyx_t_13;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("add_to_graph", 0);

  /* "dysgu/graph.pyx":830
 *     cdef int other_node
 *     cdef vector[int] other_nodes  # Other alignments to add edges between
 *     cdef int node_name = G.addNode()             # <<<<<<<<<<<<<<
 *     cdef uint64_t v = xxhasher(bam_get_qname(r._delegate), len(r.qname), 42)  # Hash qname to save mem
 *     cdef int count_sc_edges = 0  # unused currently
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addNode); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 830, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_3)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_3);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
    }
  }
  __pyx_t_1 = (__pyx_t_3) ? __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3) : __Pyx_PyObject_CallNoArg(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 830, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 830, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_node_name = __pyx_t_4;

  /* "dysgu/graph.pyx":831
 *     cdef vector[int] other_nodes  # Other alignments to add edges between
 *     cdef int node_name = G.addNode()
 *     cdef uint64_t v = xxhasher(bam_get_qname(r._delegate), len(r.qname), 42)  # Hash qname to save mem             # <<<<<<<<<<<<<<
 *     cdef int count_sc_edges = 0  # unused currently
 *     cdef int bnd_site_node, bnd_site_node2
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_qname); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 831, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = PyObject_Length(__pyx_t_1); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(1, 831, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_v = XXHash64::hash(bam_get_qname(__pyx_v_r->_delegate), __pyx_t_5, 42);

  /* "dysgu/graph.pyx":832
 *     cdef int node_name = G.addNode()
 *     cdef uint64_t v = xxhasher(bam_get_qname(r._delegate), len(r.qname), 42)  # Hash qname to save mem
 *     cdef int count_sc_edges = 0  # unused currently             # <<<<<<<<<<<<<<
 *     cdef int bnd_site_node, bnd_site_node2
 * 
 */
  __pyx_v_count_sc_edges = 0;

  /* "dysgu/graph.pyx":835
 *     cdef int bnd_site_node, bnd_site_node2
 * 
 *     node_to_name.append(v, flag, r.pos, chrom, tell, cigar_index, event_pos)  # Index this list to get the template_name             # <<<<<<<<<<<<<<
 *     genome_scanner.add_to_buffer(r, node_name, tell)  # Add read to buffer
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 835, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 835, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_6 = __Pyx_PyInt_As_long(__pyx_v_tell); if (unlikely((__pyx_t_6 == (long)-1) && PyErr_Occurred())) __PYX_ERR(1, 835, __pyx_L1_error)
  ((struct __pyx_vtabstruct_5dysgu_5graph_NodeToName *)__pyx_v_node_to_name->__pyx_vtab)->append(__pyx_v_node_to_name, __pyx_v_v, __pyx_v_flag, __pyx_t_4, __pyx_v_chrom, __pyx_t_6, __pyx_v_cigar_index, __pyx_v_event_pos);

  /* "dysgu/graph.pyx":836
 * 
 *     node_to_name.append(v, flag, r.pos, chrom, tell, cigar_index, event_pos)  # Index this list to get the template_name
 *     genome_scanner.add_to_buffer(r, node_name, tell)  # Add read to buffer             # <<<<<<<<<<<<<<
 * 
 *     if read_enum < 2:  # Prevents joining up within-read svs with between-read svs
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_genome_scanner, __pyx_n_s_add_to_buffer); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 836, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 836, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_7 = NULL;
  __pyx_t_4 = 0;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_7)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_7);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
      __pyx_t_4 = 1;
    }
  }
  #if CYTHON_FAST_PYCALL
  if (PyFunction_Check(__pyx_t_2)) {
    PyObject *__pyx_temp[4] = {__pyx_t_7, ((PyObject *)__pyx_v_r), __pyx_t_3, __pyx_v_tell};
    __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 836, __pyx_L1_error)
    __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  } else
  #endif
  #if CYTHON_FAST_PYCCALL
  if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
    PyObject *__pyx_temp[4] = {__pyx_t_7, ((PyObject *)__pyx_v_r), __pyx_t_3, __pyx_v_tell};
    __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 836, __pyx_L1_error)
    __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  } else
  #endif
  {
    __pyx_t_8 = PyTuple_New(3+__pyx_t_4); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 836, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    if (__pyx_t_7) {
      __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_7); __pyx_t_7 = NULL;
    }
    __Pyx_INCREF(((PyObject *)__pyx_v_r));
    __Pyx_GIVEREF(((PyObject *)__pyx_v_r));
    PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_4, ((PyObject *)__pyx_v_r));
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_8, 1+__pyx_t_4, __pyx_t_3);
    __Pyx_INCREF(__pyx_v_tell);
    __Pyx_GIVEREF(__pyx_v_tell);
    PyTuple_SET_ITEM(__pyx_t_8, 2+__pyx_t_4, __pyx_v_tell);
    __pyx_t_3 = 0;
    __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_8, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 836, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
  }
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":838
 *     genome_scanner.add_to_buffer(r, node_name, tell)  # Add read to buffer
 * 
 *     if read_enum < 2:  # Prevents joining up within-read svs with between-read svs             # <<<<<<<<<<<<<<
 *         template_edges.add(r.qname, flag, node_name, r.query_alignment_start)
 * 
 */
  __pyx_t_9 = ((__pyx_v_read_enum < 2) != 0);
  if (__pyx_t_9) {

    /* "dysgu/graph.pyx":839
 * 
 *     if read_enum < 2:  # Prevents joining up within-read svs with between-read svs
 *         template_edges.add(r.qname, flag, node_name, r.query_alignment_start)             # <<<<<<<<<<<<<<
 * 
 *     both_overlap = p1_overlaps and p2_overlaps
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_qname); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 839, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    if (!(likely(PyUnicode_CheckExact(__pyx_t_1))||((__pyx_t_1) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "unicode", Py_TYPE(__pyx_t_1)->tp_name), 0))) __PYX_ERR(1, 839, __pyx_L1_error)
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_query_alignment_start); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 839, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_2); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 839, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    ((struct __pyx_vtabstruct_5dysgu_5graph_TemplateEdges *)__pyx_v_template_edges->__pyx_vtab)->add(((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v_template_edges), ((PyObject*)__pyx_t_1), __pyx_v_flag, __pyx_v_node_name, __pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

    /* "dysgu/graph.pyx":838
 *     genome_scanner.add_to_buffer(r, node_name, tell)  # Add read to buffer
 * 
 *     if read_enum < 2:  # Prevents joining up within-read svs with between-read svs             # <<<<<<<<<<<<<<
 *         template_edges.add(r.qname, flag, node_name, r.query_alignment_start)
 * 
 */
  }

  /* "dysgu/graph.pyx":841
 *         template_edges.add(r.qname, flag, node_name, r.query_alignment_start)
 * 
 *     both_overlap = p1_overlaps and p2_overlaps             # <<<<<<<<<<<<<<
 * 
 *     if read_enum != BREAKEND and not mm_only and not chrom2 == -1: #(not mm_only or not both_overlap):
 */
  __pyx_t_10 = (__pyx_v_p1_overlaps != 0);
  if (__pyx_t_10) {
  } else {
    __pyx_t_9 = __pyx_t_10;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_10 = (__pyx_v_p2_overlaps != 0);
  __pyx_t_9 = __pyx_t_10;
  __pyx_L4_bool_binop_done:;
  __pyx_v_both_overlap = __pyx_t_9;

  /* "dysgu/graph.pyx":843
 *     both_overlap = p1_overlaps and p2_overlaps
 * 
 *     if read_enum != BREAKEND and not mm_only and not chrom2 == -1: #(not mm_only or not both_overlap):             # <<<<<<<<<<<<<<
 *         other_nodes = pe_scope.find_other_nodes(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar, trust_ins_len)
 * 
 */
  __pyx_t_10 = ((__pyx_v_read_enum != __pyx_e_5dysgu_5graph_BREAKEND) != 0);
  if (__pyx_t_10) {
  } else {
    __pyx_t_9 = __pyx_t_10;
    goto __pyx_L7_bool_binop_done;
  }
  __pyx_t_10 = ((!(__pyx_v_mm_only != 0)) != 0);
  if (__pyx_t_10) {
  } else {
    __pyx_t_9 = __pyx_t_10;
    goto __pyx_L7_bool_binop_done;
  }
  __pyx_t_10 = ((!((__pyx_v_chrom2 == -1L) != 0)) != 0);
  __pyx_t_9 = __pyx_t_10;
  __pyx_L7_bool_binop_done:;
  if (__pyx_t_9) {

    /* "dysgu/graph.pyx":844
 * 
 *     if read_enum != BREAKEND and not mm_only and not chrom2 == -1: #(not mm_only or not both_overlap):
 *         other_nodes = pe_scope.find_other_nodes(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar, trust_ins_len)             # <<<<<<<<<<<<<<
 * 
 *         for other_node in other_nodes:
 */
    __pyx_v_other_nodes = ((struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper *)__pyx_v_pe_scope->__pyx_vtab)->find_other_nodes(((struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)__pyx_v_pe_scope), __pyx_v_node_name, __pyx_v_chrom, __pyx_v_event_pos, __pyx_v_chrom2, __pyx_v_pos2, __pyx_v_read_enum, __pyx_v_length_from_cigar, __pyx_v_trust_ins_len);

    /* "dysgu/graph.pyx":846
 *         other_nodes = pe_scope.find_other_nodes(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar, trust_ins_len)
 * 
 *         for other_node in other_nodes:             # <<<<<<<<<<<<<<
 *             if not G.hasEdge(node_name, other_node):
 *                 # 2 signifies that this is a local edge (black edge) as opposed to a template edge
 */
    __pyx_t_11 = __pyx_v_other_nodes.begin();
    for (;;) {
      if (!(__pyx_t_11 != __pyx_v_other_nodes.end())) break;
      __pyx_t_4 = *__pyx_t_11;
      ++__pyx_t_11;
      __pyx_v_other_node = __pyx_t_4;

      /* "dysgu/graph.pyx":847
 * 
 *         for other_node in other_nodes:
 *             if not G.hasEdge(node_name, other_node):             # <<<<<<<<<<<<<<
 *                 # 2 signifies that this is a local edge (black edge) as opposed to a template edge
 *                 G.addEdge(node_name, other_node, 2)
 */
      __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_hasEdge); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 847, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 847, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_other_node); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 847, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_3);
      __pyx_t_7 = NULL;
      __pyx_t_4 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
        __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_2);
        if (likely(__pyx_t_7)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
          __Pyx_INCREF(__pyx_t_7);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_2, function);
          __pyx_t_4 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_2)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_t_8, __pyx_t_3};
        __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 847, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_t_8, __pyx_t_3};
        __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 847, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      } else
      #endif
      {
        __pyx_t_12 = PyTuple_New(2+__pyx_t_4); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 847, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_12);
        if (__pyx_t_7) {
          __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_12, 0, __pyx_t_7); __pyx_t_7 = NULL;
        }
        __Pyx_GIVEREF(__pyx_t_8);
        PyTuple_SET_ITEM(__pyx_t_12, 0+__pyx_t_4, __pyx_t_8);
        __Pyx_GIVEREF(__pyx_t_3);
        PyTuple_SET_ITEM(__pyx_t_12, 1+__pyx_t_4, __pyx_t_3);
        __pyx_t_8 = 0;
        __pyx_t_3 = 0;
        __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_12, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 847, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
      }
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
      __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 847, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __pyx_t_10 = ((!__pyx_t_9) != 0);
      if (__pyx_t_10) {

        /* "dysgu/graph.pyx":849
 *             if not G.hasEdge(node_name, other_node):
 *                 # 2 signifies that this is a local edge (black edge) as opposed to a template edge
 *                 G.addEdge(node_name, other_node, 2)             # <<<<<<<<<<<<<<
 * 
 *     elif chrom != chrom2 and clip_l != -1:  # Note all BREAKENDS have chrom != chrom2, but also includes translocations
 */
        __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addEdge); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 849, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_2);
        __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 849, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_12);
        __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_other_node); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 849, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_3);
        __pyx_t_8 = NULL;
        __pyx_t_4 = 0;
        if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
          __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_2);
          if (likely(__pyx_t_8)) {
            PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
            __Pyx_INCREF(__pyx_t_8);
            __Pyx_INCREF(function);
            __Pyx_DECREF_SET(__pyx_t_2, function);
            __pyx_t_4 = 1;
          }
        }
        #if CYTHON_FAST_PYCALL
        if (PyFunction_Check(__pyx_t_2)) {
          PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_t_12, __pyx_t_3, __pyx_int_2};
          __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 849, __pyx_L1_error)
          __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
          __Pyx_GOTREF(__pyx_t_1);
          __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
        } else
        #endif
        #if CYTHON_FAST_PYCCALL
        if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
          PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_t_12, __pyx_t_3, __pyx_int_2};
          __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 849, __pyx_L1_error)
          __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
          __Pyx_GOTREF(__pyx_t_1);
          __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
        } else
        #endif
        {
          __pyx_t_7 = PyTuple_New(3+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 849, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          if (__pyx_t_8) {
            __Pyx_GIVEREF(__pyx_t_8); PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_8); __pyx_t_8 = NULL;
          }
          __Pyx_GIVEREF(__pyx_t_12);
          PyTuple_SET_ITEM(__pyx_t_7, 0+__pyx_t_4, __pyx_t_12);
          __Pyx_GIVEREF(__pyx_t_3);
          PyTuple_SET_ITEM(__pyx_t_7, 1+__pyx_t_4, __pyx_t_3);
          __Pyx_INCREF(__pyx_int_2);
          __Pyx_GIVEREF(__pyx_int_2);
          PyTuple_SET_ITEM(__pyx_t_7, 2+__pyx_t_4, __pyx_int_2);
          __pyx_t_12 = 0;
          __pyx_t_3 = 0;
          __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_7, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 849, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        }
        __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

        /* "dysgu/graph.pyx":847
 * 
 *         for other_node in other_nodes:
 *             if not G.hasEdge(node_name, other_node):             # <<<<<<<<<<<<<<
 *                 # 2 signifies that this is a local edge (black edge) as opposed to a template edge
 *                 G.addEdge(node_name, other_node, 2)
 */
      }

      /* "dysgu/graph.pyx":846
 *         other_nodes = pe_scope.find_other_nodes(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar, trust_ins_len)
 * 
 *         for other_node in other_nodes:             # <<<<<<<<<<<<<<
 *             if not G.hasEdge(node_name, other_node):
 *                 # 2 signifies that this is a local edge (black edge) as opposed to a template edge
 */
    }

    /* "dysgu/graph.pyx":843
 *     both_overlap = p1_overlaps and p2_overlaps
 * 
 *     if read_enum != BREAKEND and not mm_only and not chrom2 == -1: #(not mm_only or not both_overlap):             # <<<<<<<<<<<<<<
 *         other_nodes = pe_scope.find_other_nodes(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar, trust_ins_len)
 * 
 */
    goto __pyx_L6;
  }

  /* "dysgu/graph.pyx":851
 *                 G.addEdge(node_name, other_node, 2)
 * 
 *     elif chrom != chrom2 and clip_l != -1:  # Note all BREAKENDS have chrom != chrom2, but also includes translocations             # <<<<<<<<<<<<<<
 *         count_sc_edges = cluster_clipped(G, r, clip_scope, chrom, event_pos, node_name)
 * 
 */
  __pyx_t_9 = ((__pyx_v_chrom != __pyx_v_chrom2) != 0);
  if (__pyx_t_9) {
  } else {
    __pyx_t_10 = __pyx_t_9;
    goto __pyx_L13_bool_binop_done;
  }
  __pyx_t_9 = ((__pyx_v_clip_l != -1L) != 0);
  __pyx_t_10 = __pyx_t_9;
  __pyx_L13_bool_binop_done:;
  if (__pyx_t_10) {

    /* "dysgu/graph.pyx":852
 * 
 *     elif chrom != chrom2 and clip_l != -1:  # Note all BREAKENDS have chrom != chrom2, but also includes translocations
 *         count_sc_edges = cluster_clipped(G, r, clip_scope, chrom, event_pos, node_name)             # <<<<<<<<<<<<<<
 * 
 *         # if read_enum == BREAKEND:  # Try and connect soft-clips to within-read events (doing this hurts precision)
 */
    __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_chrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 852, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_event_pos); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 852, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 852, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_v_count_sc_edges = __pyx_f_5dysgu_5graph_cluster_clipped(__pyx_v_G, ((PyObject *)__pyx_v_r), __pyx_v_clip_scope, __pyx_t_1, __pyx_t_2, __pyx_t_7);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

    /* "dysgu/graph.pyx":851
 *                 G.addEdge(node_name, other_node, 2)
 * 
 *     elif chrom != chrom2 and clip_l != -1:  # Note all BREAKENDS have chrom != chrom2, but also includes translocations             # <<<<<<<<<<<<<<
 *         count_sc_edges = cluster_clipped(G, r, clip_scope, chrom, event_pos, node_name)
 * 
 */
  }
  __pyx_L6:;

  /* "dysgu/graph.pyx":857
 *         #     other_nodes = pe_scope.find_other_nodes(node_name, chrom, event_pos, chrom, event_pos, read_enum)
 * 
 *     if not mm_only and read_enum != BREAKEND:             # <<<<<<<<<<<<<<
 *         pe_scope.add_item(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar)
 * 
 */
  __pyx_t_9 = ((!(__pyx_v_mm_only != 0)) != 0);
  if (__pyx_t_9) {
  } else {
    __pyx_t_10 = __pyx_t_9;
    goto __pyx_L16_bool_binop_done;
  }
  __pyx_t_9 = ((__pyx_v_read_enum != __pyx_e_5dysgu_5graph_BREAKEND) != 0);
  __pyx_t_10 = __pyx_t_9;
  __pyx_L16_bool_binop_done:;
  if (__pyx_t_10) {

    /* "dysgu/graph.pyx":858
 * 
 *     if not mm_only and read_enum != BREAKEND:
 *         pe_scope.add_item(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar)             # <<<<<<<<<<<<<<
 * 
 *     if site_adder and (read_enum == BREAKEND or read_enum == SPLIT):
 */
    ((struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper *)__pyx_v_pe_scope->__pyx_vtab)->add_item(((struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)__pyx_v_pe_scope), __pyx_v_node_name, __pyx_v_chrom, __pyx_v_event_pos, __pyx_v_chrom2, __pyx_v_pos2, __pyx_v_read_enum, __pyx_v_length_from_cigar);

    /* "dysgu/graph.pyx":857
 *         #     other_nodes = pe_scope.find_other_nodes(node_name, chrom, event_pos, chrom, event_pos, read_enum)
 * 
 *     if not mm_only and read_enum != BREAKEND:             # <<<<<<<<<<<<<<
 *         pe_scope.add_item(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar)
 * 
 */
  }

  /* "dysgu/graph.pyx":860
 *         pe_scope.add_item(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar)
 * 
 *     if site_adder and (read_enum == BREAKEND or read_enum == SPLIT):             # <<<<<<<<<<<<<<
 *         bnd_site_node = site_adder.find_nearest_site(chrom, event_pos)
 *         if bnd_site_node >= 0 and not G.hasEdge(node_name, bnd_site_node):
 */
  __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_v_site_adder); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 860, __pyx_L1_error)
  if (__pyx_t_9) {
  } else {
    __pyx_t_10 = __pyx_t_9;
    goto __pyx_L19_bool_binop_done;
  }
  switch (__pyx_v_read_enum) {
    case __pyx_e_5dysgu_5graph_BREAKEND:
    case __pyx_e_5dysgu_5graph_SPLIT:
    __pyx_t_9 = 1;
    break;
    default:
    __pyx_t_9 = 0;
    break;
  }
  __pyx_t_10 = __pyx_t_9;
  __pyx_L19_bool_binop_done:;
  if (__pyx_t_10) {

    /* "dysgu/graph.pyx":861
 * 
 *     if site_adder and (read_enum == BREAKEND or read_enum == SPLIT):
 *         bnd_site_node = site_adder.find_nearest_site(chrom, event_pos)             # <<<<<<<<<<<<<<
 *         if bnd_site_node >= 0 and not G.hasEdge(node_name, bnd_site_node):
 *             G.addEdge(node_name, bnd_site_node, 0)
 */
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_site_adder, __pyx_n_s_find_nearest_site); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 861, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_chrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 861, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_event_pos); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 861, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_12 = NULL;
    __pyx_t_4 = 0;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
      __pyx_t_12 = PyMethod_GET_SELF(__pyx_t_2);
      if (likely(__pyx_t_12)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
        __Pyx_INCREF(__pyx_t_12);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_2, function);
        __pyx_t_4 = 1;
      }
    }
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_1, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 861, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_1, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 861, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    {
      __pyx_t_8 = PyTuple_New(2+__pyx_t_4); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 861, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      if (__pyx_t_12) {
        __Pyx_GIVEREF(__pyx_t_12); PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_12); __pyx_t_12 = NULL;
      }
      __Pyx_GIVEREF(__pyx_t_1);
      PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_4, __pyx_t_1);
      __Pyx_GIVEREF(__pyx_t_3);
      PyTuple_SET_ITEM(__pyx_t_8, 1+__pyx_t_4, __pyx_t_3);
      __pyx_t_1 = 0;
      __pyx_t_3 = 0;
      __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_8, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 861, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
    }
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_7); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 861, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_v_bnd_site_node = __pyx_t_4;

    /* "dysgu/graph.pyx":862
 *     if site_adder and (read_enum == BREAKEND or read_enum == SPLIT):
 *         bnd_site_node = site_adder.find_nearest_site(chrom, event_pos)
 *         if bnd_site_node >= 0 and not G.hasEdge(node_name, bnd_site_node):             # <<<<<<<<<<<<<<
 *             G.addEdge(node_name, bnd_site_node, 0)
 *         bnd_site_node2 = site_adder.find_nearest_site(chrom2, pos2)
 */
    __pyx_t_9 = ((__pyx_v_bnd_site_node >= 0) != 0);
    if (__pyx_t_9) {
    } else {
      __pyx_t_10 = __pyx_t_9;
      goto __pyx_L22_bool_binop_done;
    }
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_hasEdge); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 862, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 862, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_bnd_site_node); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 862, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = NULL;
    __pyx_t_4 = 0;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
      __pyx_t_1 = PyMethod_GET_SELF(__pyx_t_2);
      if (likely(__pyx_t_1)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
        __Pyx_INCREF(__pyx_t_1);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_2, function);
        __pyx_t_4 = 1;
      }
    }
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_1, __pyx_t_8, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 862, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_1, __pyx_t_8, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 862, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    {
      __pyx_t_12 = PyTuple_New(2+__pyx_t_4); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 862, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      if (__pyx_t_1) {
        __Pyx_GIVEREF(__pyx_t_1); PyTuple_SET_ITEM(__pyx_t_12, 0, __pyx_t_1); __pyx_t_1 = NULL;
      }
      __Pyx_GIVEREF(__pyx_t_8);
      PyTuple_SET_ITEM(__pyx_t_12, 0+__pyx_t_4, __pyx_t_8);
      __Pyx_GIVEREF(__pyx_t_3);
      PyTuple_SET_ITEM(__pyx_t_12, 1+__pyx_t_4, __pyx_t_3);
      __pyx_t_8 = 0;
      __pyx_t_3 = 0;
      __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_12, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 862, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
    }
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 862, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_13 = ((!__pyx_t_9) != 0);
    __pyx_t_10 = __pyx_t_13;
    __pyx_L22_bool_binop_done:;
    if (__pyx_t_10) {

      /* "dysgu/graph.pyx":863
 *         bnd_site_node = site_adder.find_nearest_site(chrom, event_pos)
 *         if bnd_site_node >= 0 and not G.hasEdge(node_name, bnd_site_node):
 *             G.addEdge(node_name, bnd_site_node, 0)             # <<<<<<<<<<<<<<
 *         bnd_site_node2 = site_adder.find_nearest_site(chrom2, pos2)
 *         if bnd_site_node != bnd_site_node2 and bnd_site_node2 >= 0 and not G.hasEdge(node_name, bnd_site_node2):
 */
      __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addEdge); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 863, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 863, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_bnd_site_node); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 863, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_3);
      __pyx_t_8 = NULL;
      __pyx_t_4 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
        __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_2);
        if (likely(__pyx_t_8)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
          __Pyx_INCREF(__pyx_t_8);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_2, function);
          __pyx_t_4 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_2)) {
        PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_t_12, __pyx_t_3, __pyx_int_0};
        __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 863, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
        PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_t_12, __pyx_t_3, __pyx_int_0};
        __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 863, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      } else
      #endif
      {
        __pyx_t_1 = PyTuple_New(3+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 863, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        if (__pyx_t_8) {
          __Pyx_GIVEREF(__pyx_t_8); PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_8); __pyx_t_8 = NULL;
        }
        __Pyx_GIVEREF(__pyx_t_12);
        PyTuple_SET_ITEM(__pyx_t_1, 0+__pyx_t_4, __pyx_t_12);
        __Pyx_GIVEREF(__pyx_t_3);
        PyTuple_SET_ITEM(__pyx_t_1, 1+__pyx_t_4, __pyx_t_3);
        __Pyx_INCREF(__pyx_int_0);
        __Pyx_GIVEREF(__pyx_int_0);
        PyTuple_SET_ITEM(__pyx_t_1, 2+__pyx_t_4, __pyx_int_0);
        __pyx_t_12 = 0;
        __pyx_t_3 = 0;
        __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_1, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 863, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      }
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

      /* "dysgu/graph.pyx":862
 *     if site_adder and (read_enum == BREAKEND or read_enum == SPLIT):
 *         bnd_site_node = site_adder.find_nearest_site(chrom, event_pos)
 *         if bnd_site_node >= 0 and not G.hasEdge(node_name, bnd_site_node):             # <<<<<<<<<<<<<<
 *             G.addEdge(node_name, bnd_site_node, 0)
 *         bnd_site_node2 = site_adder.find_nearest_site(chrom2, pos2)
 */
    }

    /* "dysgu/graph.pyx":864
 *         if bnd_site_node >= 0 and not G.hasEdge(node_name, bnd_site_node):
 *             G.addEdge(node_name, bnd_site_node, 0)
 *         bnd_site_node2 = site_adder.find_nearest_site(chrom2, pos2)             # <<<<<<<<<<<<<<
 *         if bnd_site_node != bnd_site_node2 and bnd_site_node2 >= 0 and not G.hasEdge(node_name, bnd_site_node2):
 *             G.addEdge(node_name, bnd_site_node2, 0)
 */
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_site_adder, __pyx_n_s_find_nearest_site); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 864, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_chrom2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 864, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_pos2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 864, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_12 = NULL;
    __pyx_t_4 = 0;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
      __pyx_t_12 = PyMethod_GET_SELF(__pyx_t_2);
      if (likely(__pyx_t_12)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
        __Pyx_INCREF(__pyx_t_12);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_2, function);
        __pyx_t_4 = 1;
      }
    }
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_1, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 864, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_1, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 864, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    {
      __pyx_t_8 = PyTuple_New(2+__pyx_t_4); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 864, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      if (__pyx_t_12) {
        __Pyx_GIVEREF(__pyx_t_12); PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_12); __pyx_t_12 = NULL;
      }
      __Pyx_GIVEREF(__pyx_t_1);
      PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_4, __pyx_t_1);
      __Pyx_GIVEREF(__pyx_t_3);
      PyTuple_SET_ITEM(__pyx_t_8, 1+__pyx_t_4, __pyx_t_3);
      __pyx_t_1 = 0;
      __pyx_t_3 = 0;
      __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_8, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 864, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
    }
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_7); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 864, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_v_bnd_site_node2 = __pyx_t_4;

    /* "dysgu/graph.pyx":865
 *             G.addEdge(node_name, bnd_site_node, 0)
 *         bnd_site_node2 = site_adder.find_nearest_site(chrom2, pos2)
 *         if bnd_site_node != bnd_site_node2 and bnd_site_node2 >= 0 and not G.hasEdge(node_name, bnd_site_node2):             # <<<<<<<<<<<<<<
 *             G.addEdge(node_name, bnd_site_node2, 0)
 * 
 */
    __pyx_t_13 = ((__pyx_v_bnd_site_node != __pyx_v_bnd_site_node2) != 0);
    if (__pyx_t_13) {
    } else {
      __pyx_t_10 = __pyx_t_13;
      goto __pyx_L25_bool_binop_done;
    }
    __pyx_t_13 = ((__pyx_v_bnd_site_node2 >= 0) != 0);
    if (__pyx_t_13) {
    } else {
      __pyx_t_10 = __pyx_t_13;
      goto __pyx_L25_bool_binop_done;
    }
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_hasEdge); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 865, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 865, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_bnd_site_node2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 865, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = NULL;
    __pyx_t_4 = 0;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
      __pyx_t_1 = PyMethod_GET_SELF(__pyx_t_2);
      if (likely(__pyx_t_1)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
        __Pyx_INCREF(__pyx_t_1);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_2, function);
        __pyx_t_4 = 1;
      }
    }
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_1, __pyx_t_8, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 865, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
      PyObject *__pyx_temp[3] = {__pyx_t_1, __pyx_t_8, __pyx_t_3};
      __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 865, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    } else
    #endif
    {
      __pyx_t_12 = PyTuple_New(2+__pyx_t_4); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 865, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      if (__pyx_t_1) {
        __Pyx_GIVEREF(__pyx_t_1); PyTuple_SET_ITEM(__pyx_t_12, 0, __pyx_t_1); __pyx_t_1 = NULL;
      }
      __Pyx_GIVEREF(__pyx_t_8);
      PyTuple_SET_ITEM(__pyx_t_12, 0+__pyx_t_4, __pyx_t_8);
      __Pyx_GIVEREF(__pyx_t_3);
      PyTuple_SET_ITEM(__pyx_t_12, 1+__pyx_t_4, __pyx_t_3);
      __pyx_t_8 = 0;
      __pyx_t_3 = 0;
      __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_12, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 865, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
    }
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_13 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_13 < 0)) __PYX_ERR(1, 865, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_9 = ((!__pyx_t_13) != 0);
    __pyx_t_10 = __pyx_t_9;
    __pyx_L25_bool_binop_done:;
    if (__pyx_t_10) {

      /* "dysgu/graph.pyx":866
 *         bnd_site_node2 = site_adder.find_nearest_site(chrom2, pos2)
 *         if bnd_site_node != bnd_site_node2 and bnd_site_node2 >= 0 and not G.hasEdge(node_name, bnd_site_node2):
 *             G.addEdge(node_name, bnd_site_node2, 0)             # <<<<<<<<<<<<<<
 * 
 *     # Debug:
 */
      __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addEdge); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 866, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 866, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_bnd_site_node2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 866, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_3);
      __pyx_t_8 = NULL;
      __pyx_t_4 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
        __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_2);
        if (likely(__pyx_t_8)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
          __Pyx_INCREF(__pyx_t_8);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_2, function);
          __pyx_t_4 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_2)) {
        PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_t_12, __pyx_t_3, __pyx_int_0};
        __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 866, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
        PyObject *__pyx_temp[4] = {__pyx_t_8, __pyx_t_12, __pyx_t_3, __pyx_int_0};
        __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_4, 3+__pyx_t_4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 866, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      } else
      #endif
      {
        __pyx_t_1 = PyTuple_New(3+__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 866, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        if (__pyx_t_8) {
          __Pyx_GIVEREF(__pyx_t_8); PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_8); __pyx_t_8 = NULL;
        }
        __Pyx_GIVEREF(__pyx_t_12);
        PyTuple_SET_ITEM(__pyx_t_1, 0+__pyx_t_4, __pyx_t_12);
        __Pyx_GIVEREF(__pyx_t_3);
        PyTuple_SET_ITEM(__pyx_t_1, 1+__pyx_t_4, __pyx_t_3);
        __Pyx_INCREF(__pyx_int_0);
        __Pyx_GIVEREF(__pyx_int_0);
        PyTuple_SET_ITEM(__pyx_t_1, 2+__pyx_t_4, __pyx_int_0);
        __pyx_t_12 = 0;
        __pyx_t_3 = 0;
        __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_1, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 866, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      }
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

      /* "dysgu/graph.pyx":865
 *             G.addEdge(node_name, bnd_site_node, 0)
 *         bnd_site_node2 = site_adder.find_nearest_site(chrom2, pos2)
 *         if bnd_site_node != bnd_site_node2 and bnd_site_node2 >= 0 and not G.hasEdge(node_name, bnd_site_node2):             # <<<<<<<<<<<<<<
 *             G.addEdge(node_name, bnd_site_node2, 0)
 * 
 */
    }

    /* "dysgu/graph.pyx":860
 *         pe_scope.add_item(node_name, chrom, event_pos, chrom2, pos2, read_enum, length_from_cigar)
 * 
 *     if site_adder and (read_enum == BREAKEND or read_enum == SPLIT):             # <<<<<<<<<<<<<<
 *         bnd_site_node = site_adder.find_nearest_site(chrom, event_pos)
 *         if bnd_site_node >= 0 and not G.hasEdge(node_name, bnd_site_node):
 */
  }

  /* "dysgu/graph.pyx":820
 * 
 * 
 * cdef void add_to_graph(G, AlignedSegment r, PairedEndScoper_t pe_scope, TemplateEdges_t template_edges,             # <<<<<<<<<<<<<<
 *                        NodeToName node_to_name, genome_scanner,
 *                        int flag, int chrom, tell, int cigar_index, int event_pos,
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_12);
  __Pyx_WriteUnraisable("dysgu.graph.add_to_graph", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":883
 * 
 * 
 * cdef int good_quality_clip(AlignedSegment r, int clip_length):             # <<<<<<<<<<<<<<
 * 
 *     # Use sliding window to check that soft-clip has at least n good bases over qual 20
 */

static int __pyx_f_5dysgu_5graph_good_quality_clip(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *__pyx_v_r, int __pyx_v_clip_length) {
  __Pyx_memviewslice __pyx_v_quals = { 0, 0, { 0 }, { 0 }, { 0 } };
  char *__pyx_v_char_ptr_rseq;
  int __pyx_v_i;
  int __pyx_v_length;
  int __pyx_v_w_sum;
  int __pyx_v_window_length;
  float __pyx_v_avg_qual;
  int __pyx_v_poly;
  PyObject *__pyx_v_total_good = 0;
  PyObject *__pyx_v_ct = NULL;
  int __pyx_v_basecounts[17];
  int __pyx_v_homopolymer;
  int __pyx_v_base_index;
  long __pyx_v_j;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  __Pyx_memviewslice __pyx_t_2 = { 0, 0, { 0 }, { 0 }, { 0 } };
  size_t __pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_t_6;
  int __pyx_t_7;
  long __pyx_t_8;
  int __pyx_t_9;
  int __pyx_t_10;
  Py_ssize_t __pyx_t_11;
  int __pyx_t_12;
  Py_ssize_t __pyx_t_13;
  Py_ssize_t __pyx_t_14;
  Py_ssize_t __pyx_t_15;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("good_quality_clip", 0);

  /* "dysgu/graph.pyx":886
 * 
 *     # Use sliding window to check that soft-clip has at least n good bases over qual 20
 *     cdef const unsigned char[:] quals = r.query_qualities             # <<<<<<<<<<<<<<
 *     if len(quals) == 0:
 *         return 1
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_query_qualities); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 886, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_to_MemoryviewSlice_ds_unsigned_char__const__(__pyx_t_1, 0); if (unlikely(!__pyx_t_2.memview)) __PYX_ERR(1, 886, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_quals = __pyx_t_2;
  __pyx_t_2.memview = NULL;
  __pyx_t_2.data = NULL;

  /* "dysgu/graph.pyx":887
 *     # Use sliding window to check that soft-clip has at least n good bases over qual 20
 *     cdef const unsigned char[:] quals = r.query_qualities
 *     if len(quals) == 0:             # <<<<<<<<<<<<<<
 *         return 1
 * 
 */
  __pyx_t_3 = __Pyx_MemoryView_Len(__pyx_v_quals); 
  __pyx_t_4 = ((__pyx_t_3 == 0) != 0);
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":888
 *     cdef const unsigned char[:] quals = r.query_qualities
 *     if len(quals) == 0:
 *         return 1             # <<<<<<<<<<<<<<
 * 
 *     cdef char* char_ptr_rseq = <char*>bam_get_seq(r._delegate)
 */
    __pyx_r = 1;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":887
 *     # Use sliding window to check that soft-clip has at least n good bases over qual 20
 *     cdef const unsigned char[:] quals = r.query_qualities
 *     if len(quals) == 0:             # <<<<<<<<<<<<<<
 *         return 1
 * 
 */
  }

  /* "dysgu/graph.pyx":890
 *         return 1
 * 
 *     cdef char* char_ptr_rseq = <char*>bam_get_seq(r._delegate)             # <<<<<<<<<<<<<<
 *     cdef int i, length, w_sum
 *     cdef int window_length = 10
 */
  __pyx_v_char_ptr_rseq = ((char *)bam_get_seq(__pyx_v_r->_delegate));

  /* "dysgu/graph.pyx":892
 *     cdef char* char_ptr_rseq = <char*>bam_get_seq(r._delegate)
 *     cdef int i, length, w_sum
 *     cdef int window_length = 10             # <<<<<<<<<<<<<<
 *     if clip_length < window_length:
 *         window_length = clip_length
 */
  __pyx_v_window_length = 10;

  /* "dysgu/graph.pyx":893
 *     cdef int i, length, w_sum
 *     cdef int window_length = 10
 *     if clip_length < window_length:             # <<<<<<<<<<<<<<
 *         window_length = clip_length
 *     cdef float avg_qual
 */
  __pyx_t_4 = ((__pyx_v_clip_length < __pyx_v_window_length) != 0);
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":894
 *     cdef int window_length = 10
 *     if clip_length < window_length:
 *         window_length = clip_length             # <<<<<<<<<<<<<<
 *     cdef float avg_qual
 *     cdef int poly = window_length - 1
 */
    __pyx_v_window_length = __pyx_v_clip_length;

    /* "dysgu/graph.pyx":893
 *     cdef int i, length, w_sum
 *     cdef int window_length = 10
 *     if clip_length < window_length:             # <<<<<<<<<<<<<<
 *         window_length = clip_length
 *     cdef float avg_qual
 */
  }

  /* "dysgu/graph.pyx":896
 *         window_length = clip_length
 *     cdef float avg_qual
 *     cdef int poly = window_length - 1             # <<<<<<<<<<<<<<
 *     cdef total_good = window_length - 1
 *     ct = r.cigartuples
 */
  __pyx_v_poly = (__pyx_v_window_length - 1);

  /* "dysgu/graph.pyx":897
 *     cdef float avg_qual
 *     cdef int poly = window_length - 1
 *     cdef total_good = window_length - 1             # <<<<<<<<<<<<<<
 *     ct = r.cigartuples
 *     if r.flag & 2304:  # supplementary, usually hard-clipped, assume good clipping
 */
  __pyx_t_1 = __Pyx_PyInt_From_long((__pyx_v_window_length - 1)); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 897, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_total_good = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":898
 *     cdef int poly = window_length - 1
 *     cdef total_good = window_length - 1
 *     ct = r.cigartuples             # <<<<<<<<<<<<<<
 *     if r.flag & 2304:  # supplementary, usually hard-clipped, assume good clipping
 *         if ct[0][0] == 5 or ct[-1][0] == 5:
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 898, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_ct = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":899
 *     cdef total_good = window_length - 1
 *     ct = r.cigartuples
 *     if r.flag & 2304:  # supplementary, usually hard-clipped, assume good clipping             # <<<<<<<<<<<<<<
 *         if ct[0][0] == 5 or ct[-1][0] == 5:
 *             return 1
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_flag); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 899, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = __Pyx_PyInt_AndObjC(__pyx_t_1, __pyx_int_2304, 0x900, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 899, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 899, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":900
 *     ct = r.cigartuples
 *     if r.flag & 2304:  # supplementary, usually hard-clipped, assume good clipping
 *         if ct[0][0] == 5 or ct[-1][0] == 5:             # <<<<<<<<<<<<<<
 *             return 1
 * 
 */
    __pyx_t_5 = __Pyx_GetItemInt(__pyx_v_ct, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_5, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyInt_EqObjC(__pyx_t_1, __pyx_int_5, 5, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    if (!__pyx_t_6) {
    } else {
      __pyx_t_4 = __pyx_t_6;
      goto __pyx_L7_bool_binop_done;
    }
    __pyx_t_5 = __Pyx_GetItemInt(__pyx_v_ct, -1L, long, 1, __Pyx_PyInt_From_long, 0, 1, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_5, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyInt_EqObjC(__pyx_t_1, __pyx_int_5, 5, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 900, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_4 = __pyx_t_6;
    __pyx_L7_bool_binop_done:;
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":901
 *     if r.flag & 2304:  # supplementary, usually hard-clipped, assume good clipping
 *         if ct[0][0] == 5 or ct[-1][0] == 5:
 *             return 1             # <<<<<<<<<<<<<<
 * 
 *     cdef int[17] basecounts  # char value is index into array
 */
      __pyx_r = 1;
      goto __pyx_L0;

      /* "dysgu/graph.pyx":900
 *     ct = r.cigartuples
 *     if r.flag & 2304:  # supplementary, usually hard-clipped, assume good clipping
 *         if ct[0][0] == 5 or ct[-1][0] == 5:             # <<<<<<<<<<<<<<
 *             return 1
 * 
 */
    }

    /* "dysgu/graph.pyx":899
 *     cdef total_good = window_length - 1
 *     ct = r.cigartuples
 *     if r.flag & 2304:  # supplementary, usually hard-clipped, assume good clipping             # <<<<<<<<<<<<<<
 *         if ct[0][0] == 5 or ct[-1][0] == 5:
 *             return 1
 */
  }

  /* "dysgu/graph.pyx":907
 *     cdef int base_index
 * 
 *     if ct[0][0] == 4:             # <<<<<<<<<<<<<<
 *         length = r.cigartuples[0][1]
 *         if length >= window_length and length >= clip_length:
 */
  __pyx_t_5 = __Pyx_GetItemInt(__pyx_v_ct, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 907, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_5, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 907, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = __Pyx_PyInt_EqObjC(__pyx_t_1, __pyx_int_4, 4, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 907, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 907, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":908
 * 
 *     if ct[0][0] == 4:
 *         length = r.cigartuples[0][1]             # <<<<<<<<<<<<<<
 *         if length >= window_length and length >= clip_length:
 *             for i in range(length - window_length, -1, -1):
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 908, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_5, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 908, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_1, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 908, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_7 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_7 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 908, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_v_length = __pyx_t_7;

    /* "dysgu/graph.pyx":909
 *     if ct[0][0] == 4:
 *         length = r.cigartuples[0][1]
 *         if length >= window_length and length >= clip_length:             # <<<<<<<<<<<<<<
 *             for i in range(length - window_length, -1, -1):
 *                 # average of current window by counting leftwards
 */
    __pyx_t_6 = ((__pyx_v_length >= __pyx_v_window_length) != 0);
    if (__pyx_t_6) {
    } else {
      __pyx_t_4 = __pyx_t_6;
      goto __pyx_L11_bool_binop_done;
    }
    __pyx_t_6 = ((__pyx_v_length >= __pyx_v_clip_length) != 0);
    __pyx_t_4 = __pyx_t_6;
    __pyx_L11_bool_binop_done:;
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":910
 *         length = r.cigartuples[0][1]
 *         if length >= window_length and length >= clip_length:
 *             for i in range(length - window_length, -1, -1):             # <<<<<<<<<<<<<<
 *                 # average of current window by counting leftwards
 *                 for j in range(0, 16):
 */
      for (__pyx_t_7 = (__pyx_v_length - __pyx_v_window_length); __pyx_t_7 > -1; __pyx_t_7-=1) {
        __pyx_v_i = __pyx_t_7;

        /* "dysgu/graph.pyx":912
 *             for i in range(length - window_length, -1, -1):
 *                 # average of current window by counting leftwards
 *                 for j in range(0, 16):             # <<<<<<<<<<<<<<
 *                     basecounts[j] = 0
 *                 homopolymer = False
 */
        for (__pyx_t_8 = 0; __pyx_t_8 < 16; __pyx_t_8+=1) {
          __pyx_v_j = __pyx_t_8;

          /* "dysgu/graph.pyx":913
 *                 # average of current window by counting leftwards
 *                 for j in range(0, 16):
 *                     basecounts[j] = 0             # <<<<<<<<<<<<<<
 *                 homopolymer = False
 *                 w_sum = 0
 */
          (__pyx_v_basecounts[__pyx_v_j]) = 0;
        }

        /* "dysgu/graph.pyx":914
 *                 for j in range(0, 16):
 *                     basecounts[j] = 0
 *                 homopolymer = False             # <<<<<<<<<<<<<<
 *                 w_sum = 0
 *                 for j in range(i, i + window_length):
 */
        __pyx_v_homopolymer = 0;

        /* "dysgu/graph.pyx":915
 *                     basecounts[j] = 0
 *                 homopolymer = False
 *                 w_sum = 0             # <<<<<<<<<<<<<<
 *                 for j in range(i, i + window_length):
 *                     w_sum += quals[j]
 */
        __pyx_v_w_sum = 0;

        /* "dysgu/graph.pyx":916
 *                 homopolymer = False
 *                 w_sum = 0
 *                 for j in range(i, i + window_length):             # <<<<<<<<<<<<<<
 *                     w_sum += quals[j]
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 */
        __pyx_t_9 = (__pyx_v_i + __pyx_v_window_length);
        __pyx_t_10 = __pyx_t_9;
        for (__pyx_t_8 = __pyx_v_i; __pyx_t_8 < __pyx_t_10; __pyx_t_8+=1) {
          __pyx_v_j = __pyx_t_8;

          /* "dysgu/graph.pyx":917
 *                 w_sum = 0
 *                 for j in range(i, i + window_length):
 *                     w_sum += quals[j]             # <<<<<<<<<<<<<<
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1
 */
          __pyx_t_11 = __pyx_v_j;
          if (__pyx_t_11 < 0) __pyx_t_11 += __pyx_v_quals.shape[0];
          __pyx_v_w_sum = (__pyx_v_w_sum + (*((unsigned char const  *) ( /* dim=0 */ (__pyx_v_quals.data + __pyx_t_11 * __pyx_v_quals.strides[0]) ))));

          /* "dysgu/graph.pyx":918
 *                 for j in range(i, i + window_length):
 *                     w_sum += quals[j]
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)             # <<<<<<<<<<<<<<
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:
 */
          __pyx_v_base_index = ((int)bam_seqi(__pyx_v_char_ptr_rseq, __pyx_v_j));

          /* "dysgu/graph.pyx":919
 *                     w_sum += quals[j]
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1             # <<<<<<<<<<<<<<
 *                     if basecounts[base_index] == poly:
 *                         homopolymer = True
 */
          __pyx_t_12 = __pyx_v_base_index;
          (__pyx_v_basecounts[__pyx_t_12]) = ((__pyx_v_basecounts[__pyx_t_12]) + 1);

          /* "dysgu/graph.pyx":920
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:             # <<<<<<<<<<<<<<
 *                         homopolymer = True
 *                         break
 */
          __pyx_t_4 = (((__pyx_v_basecounts[__pyx_v_base_index]) == __pyx_v_poly) != 0);
          if (__pyx_t_4) {

            /* "dysgu/graph.pyx":921
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:
 *                         homopolymer = True             # <<<<<<<<<<<<<<
 *                         break
 * 
 */
            __pyx_v_homopolymer = 1;

            /* "dysgu/graph.pyx":922
 *                     if basecounts[base_index] == poly:
 *                         homopolymer = True
 *                         break             # <<<<<<<<<<<<<<
 * 
 *                 avg_qual = w_sum / float(window_length)
 */
            goto __pyx_L18_break;

            /* "dysgu/graph.pyx":920
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:             # <<<<<<<<<<<<<<
 *                         homopolymer = True
 *                         break
 */
          }
        }
        __pyx_L18_break:;

        /* "dysgu/graph.pyx":924
 *                         break
 * 
 *                 avg_qual = w_sum / float(window_length)             # <<<<<<<<<<<<<<
 *                 if avg_qual > 10:
 *                     if not homopolymer:
 */
        if (unlikely(((double)__pyx_v_window_length) == 0)) {
          PyErr_SetString(PyExc_ZeroDivisionError, "float division");
          __PYX_ERR(1, 924, __pyx_L1_error)
        }
        __pyx_v_avg_qual = (((double)__pyx_v_w_sum) / ((double)__pyx_v_window_length));

        /* "dysgu/graph.pyx":925
 * 
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:             # <<<<<<<<<<<<<<
 *                     if not homopolymer:
 *                         # Make sure stretch is not homopolymer
 */
        __pyx_t_4 = ((__pyx_v_avg_qual > 10.0) != 0);
        if (__pyx_t_4) {

          /* "dysgu/graph.pyx":926
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:
 *                     if not homopolymer:             # <<<<<<<<<<<<<<
 *                         # Make sure stretch is not homopolymer
 *                         total_good += 1
 */
          __pyx_t_4 = ((!(__pyx_v_homopolymer != 0)) != 0);
          if (__pyx_t_4) {

            /* "dysgu/graph.pyx":928
 *                     if not homopolymer:
 *                         # Make sure stretch is not homopolymer
 *                         total_good += 1             # <<<<<<<<<<<<<<
 *                 else:
 *                     break
 */
            __pyx_t_5 = __Pyx_PyInt_AddObjC(__pyx_v_total_good, __pyx_int_1, 1, 1, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 928, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __Pyx_DECREF_SET(__pyx_v_total_good, __pyx_t_5);
            __pyx_t_5 = 0;

            /* "dysgu/graph.pyx":926
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:
 *                     if not homopolymer:             # <<<<<<<<<<<<<<
 *                         # Make sure stretch is not homopolymer
 *                         total_good += 1
 */
          }

          /* "dysgu/graph.pyx":925
 * 
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:             # <<<<<<<<<<<<<<
 *                     if not homopolymer:
 *                         # Make sure stretch is not homopolymer
 */
          goto __pyx_L20;
        }

        /* "dysgu/graph.pyx":930
 *                         total_good += 1
 *                 else:
 *                     break             # <<<<<<<<<<<<<<
 *             if total_good >= clip_length:
 *                 return 1
 */
        /*else*/ {
          goto __pyx_L14_break;
        }
        __pyx_L20:;
      }
      __pyx_L14_break:;

      /* "dysgu/graph.pyx":931
 *                 else:
 *                     break
 *             if total_good >= clip_length:             # <<<<<<<<<<<<<<
 *                 return 1
 * 
 */
      __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_clip_length); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 931, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_1 = PyObject_RichCompare(__pyx_v_total_good, __pyx_t_5, Py_GE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 931, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 931, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      if (__pyx_t_4) {

        /* "dysgu/graph.pyx":932
 *                     break
 *             if total_good >= clip_length:
 *                 return 1             # <<<<<<<<<<<<<<
 * 
 *     total_good = window_length - 1
 */
        __pyx_r = 1;
        goto __pyx_L0;

        /* "dysgu/graph.pyx":931
 *                 else:
 *                     break
 *             if total_good >= clip_length:             # <<<<<<<<<<<<<<
 *                 return 1
 * 
 */
      }

      /* "dysgu/graph.pyx":909
 *     if ct[0][0] == 4:
 *         length = r.cigartuples[0][1]
 *         if length >= window_length and length >= clip_length:             # <<<<<<<<<<<<<<
 *             for i in range(length - window_length, -1, -1):
 *                 # average of current window by counting leftwards
 */
    }

    /* "dysgu/graph.pyx":907
 *     cdef int base_index
 * 
 *     if ct[0][0] == 4:             # <<<<<<<<<<<<<<
 *         length = r.cigartuples[0][1]
 *         if length >= window_length and length >= clip_length:
 */
  }

  /* "dysgu/graph.pyx":934
 *                 return 1
 * 
 *     total_good = window_length - 1             # <<<<<<<<<<<<<<
 *     if ct[-1][0] == 4:
 *         length = r.cigartuples[-1][1]
 */
  __pyx_t_1 = __Pyx_PyInt_From_long((__pyx_v_window_length - 1)); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 934, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF_SET(__pyx_v_total_good, __pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":935
 * 
 *     total_good = window_length - 1
 *     if ct[-1][0] == 4:             # <<<<<<<<<<<<<<
 *         length = r.cigartuples[-1][1]
 *         if length >= window_length and length >= clip_length:
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_ct, -1L, long, 1, __Pyx_PyInt_From_long, 0, 1, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 935, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_1, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 935, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyInt_EqObjC(__pyx_t_5, __pyx_int_4, 4, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 935, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 935, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":936
 *     total_good = window_length - 1
 *     if ct[-1][0] == 4:
 *         length = r.cigartuples[-1][1]             # <<<<<<<<<<<<<<
 *         if length >= window_length and length >= clip_length:
 *             for i in range(len(r.query_qualities) - length, len(r.query_qualities) - window_length):
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 936, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_1, -1L, long, 1, __Pyx_PyInt_From_long, 0, 1, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 936, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_5, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 936, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_7 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_7 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 936, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_length = __pyx_t_7;

    /* "dysgu/graph.pyx":937
 *     if ct[-1][0] == 4:
 *         length = r.cigartuples[-1][1]
 *         if length >= window_length and length >= clip_length:             # <<<<<<<<<<<<<<
 *             for i in range(len(r.query_qualities) - length, len(r.query_qualities) - window_length):
 *                 # average of current window by counting rightwards
 */
    __pyx_t_6 = ((__pyx_v_length >= __pyx_v_window_length) != 0);
    if (__pyx_t_6) {
    } else {
      __pyx_t_4 = __pyx_t_6;
      goto __pyx_L25_bool_binop_done;
    }
    __pyx_t_6 = ((__pyx_v_length >= __pyx_v_clip_length) != 0);
    __pyx_t_4 = __pyx_t_6;
    __pyx_L25_bool_binop_done:;
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":938
 *         length = r.cigartuples[-1][1]
 *         if length >= window_length and length >= clip_length:
 *             for i in range(len(r.query_qualities) - length, len(r.query_qualities) - window_length):             # <<<<<<<<<<<<<<
 *                 # average of current window by counting rightwards
 *                 for j in range(0, 16):
 */
      __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_query_qualities); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 938, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_13 = PyObject_Length(__pyx_t_1); if (unlikely(__pyx_t_13 == ((Py_ssize_t)-1))) __PYX_ERR(1, 938, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __pyx_t_14 = (__pyx_t_13 - __pyx_v_window_length);
      __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_query_qualities); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 938, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_13 = PyObject_Length(__pyx_t_1); if (unlikely(__pyx_t_13 == ((Py_ssize_t)-1))) __PYX_ERR(1, 938, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __pyx_t_15 = __pyx_t_14;
      for (__pyx_t_7 = (__pyx_t_13 - __pyx_v_length); __pyx_t_7 < __pyx_t_15; __pyx_t_7+=1) {
        __pyx_v_i = __pyx_t_7;

        /* "dysgu/graph.pyx":940
 *             for i in range(len(r.query_qualities) - length, len(r.query_qualities) - window_length):
 *                 # average of current window by counting rightwards
 *                 for j in range(0, 16):             # <<<<<<<<<<<<<<
 *                     basecounts[j] = 0
 *                 homopolymer = False
 */
        for (__pyx_t_8 = 0; __pyx_t_8 < 16; __pyx_t_8+=1) {
          __pyx_v_j = __pyx_t_8;

          /* "dysgu/graph.pyx":941
 *                 # average of current window by counting rightwards
 *                 for j in range(0, 16):
 *                     basecounts[j] = 0             # <<<<<<<<<<<<<<
 *                 homopolymer = False
 *                 w_sum = 0
 */
          (__pyx_v_basecounts[__pyx_v_j]) = 0;
        }

        /* "dysgu/graph.pyx":942
 *                 for j in range(0, 16):
 *                     basecounts[j] = 0
 *                 homopolymer = False             # <<<<<<<<<<<<<<
 *                 w_sum = 0
 *                 for j in range(i, i + window_length):
 */
        __pyx_v_homopolymer = 0;

        /* "dysgu/graph.pyx":943
 *                     basecounts[j] = 0
 *                 homopolymer = False
 *                 w_sum = 0             # <<<<<<<<<<<<<<
 *                 for j in range(i, i + window_length):
 *                     w_sum += quals[j]
 */
        __pyx_v_w_sum = 0;

        /* "dysgu/graph.pyx":944
 *                 homopolymer = False
 *                 w_sum = 0
 *                 for j in range(i, i + window_length):             # <<<<<<<<<<<<<<
 *                     w_sum += quals[j]
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 */
        __pyx_t_9 = (__pyx_v_i + __pyx_v_window_length);
        __pyx_t_10 = __pyx_t_9;
        for (__pyx_t_8 = __pyx_v_i; __pyx_t_8 < __pyx_t_10; __pyx_t_8+=1) {
          __pyx_v_j = __pyx_t_8;

          /* "dysgu/graph.pyx":945
 *                 w_sum = 0
 *                 for j in range(i, i + window_length):
 *                     w_sum += quals[j]             # <<<<<<<<<<<<<<
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1
 */
          __pyx_t_11 = __pyx_v_j;
          if (__pyx_t_11 < 0) __pyx_t_11 += __pyx_v_quals.shape[0];
          __pyx_v_w_sum = (__pyx_v_w_sum + (*((unsigned char const  *) ( /* dim=0 */ (__pyx_v_quals.data + __pyx_t_11 * __pyx_v_quals.strides[0]) ))));

          /* "dysgu/graph.pyx":946
 *                 for j in range(i, i + window_length):
 *                     w_sum += quals[j]
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)             # <<<<<<<<<<<<<<
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:
 */
          __pyx_v_base_index = ((int)bam_seqi(__pyx_v_char_ptr_rseq, __pyx_v_j));

          /* "dysgu/graph.pyx":947
 *                     w_sum += quals[j]
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1             # <<<<<<<<<<<<<<
 *                     if basecounts[base_index] == poly:
 *                         homopolymer = True
 */
          __pyx_t_12 = __pyx_v_base_index;
          (__pyx_v_basecounts[__pyx_t_12]) = ((__pyx_v_basecounts[__pyx_t_12]) + 1);

          /* "dysgu/graph.pyx":948
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:             # <<<<<<<<<<<<<<
 *                         homopolymer = True
 *                         break
 */
          __pyx_t_4 = (((__pyx_v_basecounts[__pyx_v_base_index]) == __pyx_v_poly) != 0);
          if (__pyx_t_4) {

            /* "dysgu/graph.pyx":949
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:
 *                         homopolymer = True             # <<<<<<<<<<<<<<
 *                         break
 *                 avg_qual = w_sum / float(window_length)
 */
            __pyx_v_homopolymer = 1;

            /* "dysgu/graph.pyx":950
 *                     if basecounts[base_index] == poly:
 *                         homopolymer = True
 *                         break             # <<<<<<<<<<<<<<
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:
 */
            goto __pyx_L32_break;

            /* "dysgu/graph.pyx":948
 *                     base_index = <int>bam_seqi(char_ptr_rseq, j)
 *                     basecounts[base_index] += 1
 *                     if basecounts[base_index] == poly:             # <<<<<<<<<<<<<<
 *                         homopolymer = True
 *                         break
 */
          }
        }
        __pyx_L32_break:;

        /* "dysgu/graph.pyx":951
 *                         homopolymer = True
 *                         break
 *                 avg_qual = w_sum / float(window_length)             # <<<<<<<<<<<<<<
 *                 if avg_qual > 10:
 *                     if not homopolymer:
 */
        if (unlikely(((double)__pyx_v_window_length) == 0)) {
          PyErr_SetString(PyExc_ZeroDivisionError, "float division");
          __PYX_ERR(1, 951, __pyx_L1_error)
        }
        __pyx_v_avg_qual = (((double)__pyx_v_w_sum) / ((double)__pyx_v_window_length));

        /* "dysgu/graph.pyx":952
 *                         break
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:             # <<<<<<<<<<<<<<
 *                     if not homopolymer:
 *                         total_good += 1
 */
        __pyx_t_4 = ((__pyx_v_avg_qual > 10.0) != 0);
        if (__pyx_t_4) {

          /* "dysgu/graph.pyx":953
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:
 *                     if not homopolymer:             # <<<<<<<<<<<<<<
 *                         total_good += 1
 *                 else:
 */
          __pyx_t_4 = ((!(__pyx_v_homopolymer != 0)) != 0);
          if (__pyx_t_4) {

            /* "dysgu/graph.pyx":954
 *                 if avg_qual > 10:
 *                     if not homopolymer:
 *                         total_good += 1             # <<<<<<<<<<<<<<
 *                 else:
 *                     break
 */
            __pyx_t_1 = __Pyx_PyInt_AddObjC(__pyx_v_total_good, __pyx_int_1, 1, 1, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 954, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_1);
            __Pyx_DECREF_SET(__pyx_v_total_good, __pyx_t_1);
            __pyx_t_1 = 0;

            /* "dysgu/graph.pyx":953
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:
 *                     if not homopolymer:             # <<<<<<<<<<<<<<
 *                         total_good += 1
 *                 else:
 */
          }

          /* "dysgu/graph.pyx":952
 *                         break
 *                 avg_qual = w_sum / float(window_length)
 *                 if avg_qual > 10:             # <<<<<<<<<<<<<<
 *                     if not homopolymer:
 *                         total_good += 1
 */
          goto __pyx_L34;
        }

        /* "dysgu/graph.pyx":956
 *                         total_good += 1
 *                 else:
 *                     break             # <<<<<<<<<<<<<<
 *             if total_good >= clip_length:
 *                 return 1
 */
        /*else*/ {
          goto __pyx_L28_break;
        }
        __pyx_L34:;
      }
      __pyx_L28_break:;

      /* "dysgu/graph.pyx":957
 *                 else:
 *                     break
 *             if total_good >= clip_length:             # <<<<<<<<<<<<<<
 *                 return 1
 *     return 0
 */
      __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_clip_length); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 957, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_5 = PyObject_RichCompare(__pyx_v_total_good, __pyx_t_1, Py_GE); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 957, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 957, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      if (__pyx_t_4) {

        /* "dysgu/graph.pyx":958
 *                     break
 *             if total_good >= clip_length:
 *                 return 1             # <<<<<<<<<<<<<<
 *     return 0
 * 
 */
        __pyx_r = 1;
        goto __pyx_L0;

        /* "dysgu/graph.pyx":957
 *                 else:
 *                     break
 *             if total_good >= clip_length:             # <<<<<<<<<<<<<<
 *                 return 1
 *     return 0
 */
      }

      /* "dysgu/graph.pyx":937
 *     if ct[-1][0] == 4:
 *         length = r.cigartuples[-1][1]
 *         if length >= window_length and length >= clip_length:             # <<<<<<<<<<<<<<
 *             for i in range(len(r.query_qualities) - length, len(r.query_qualities) - window_length):
 *                 # average of current window by counting rightwards
 */
    }

    /* "dysgu/graph.pyx":935
 * 
 *     total_good = window_length - 1
 *     if ct[-1][0] == 4:             # <<<<<<<<<<<<<<
 *         length = r.cigartuples[-1][1]
 *         if length >= window_length and length >= clip_length:
 */
  }

  /* "dysgu/graph.pyx":959
 *             if total_good >= clip_length:
 *                 return 1
 *     return 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":883
 * 
 * 
 * cdef int good_quality_clip(AlignedSegment r, int clip_length):             # <<<<<<<<<<<<<<
 * 
 *     # Use sliding window to check that soft-clip has at least n good bases over qual 20
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __PYX_XDEC_MEMVIEW(&__pyx_t_2, 1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_WriteUnraisable("dysgu.graph.good_quality_clip", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_r = 0;
  __pyx_L0:;
  __PYX_XDEC_MEMVIEW(&__pyx_v_quals, 1);
  __Pyx_XDECREF(__pyx_v_total_good);
  __Pyx_XDECREF(__pyx_v_ct);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":962
 * 
 * 
 * cdef void process_alignment(G, AlignedSegment r, int clip_l, int loci_dist, gettid,             # <<<<<<<<<<<<<<
 *                             overlap_regions, int clustering_dist, PairedEndScoper_t pe_scope,
 *                             int cigar_index, int event_pos, int paired_end, long tell, genome_scanner,
 */

static void __pyx_f_5dysgu_5graph_process_alignment(PyObject *__pyx_v_G, struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *__pyx_v_r, int __pyx_v_clip_l, int __pyx_v_loci_dist, PyObject *__pyx_v_gettid, PyObject *__pyx_v_overlap_regions, int __pyx_v_clustering_dist, __pyx_t_5dysgu_5graph_PairedEndScoper_t __pyx_v_pe_scope, int __pyx_v_cigar_index, int __pyx_v_event_pos, int __pyx_v_paired_end, long __pyx_v_tell, PyObject *__pyx_v_genome_scanner, __pyx_t_5dysgu_5graph_TemplateEdges_t __pyx_v_template_edges, struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_node_to_name, int __pyx_v_cigar_pos2, int __pyx_v_mapq_thresh, __pyx_t_5dysgu_5graph_ClipScoper_t __pyx_v_clip_scope, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum, PyObject *__pyx_v_bad_clip_counter, int __pyx_v_mm_only, PyObject *__pyx_v_site_adder, int __pyx_v_length_from_cigar, int __pyx_v_trust_ins_len) {
  int __pyx_v_current_overlaps_roi;
  int __pyx_v_next_overlaps_roi;
  CYTHON_UNUSED int __pyx_v_add_insertion_link;
  int __pyx_v_chrom;
  int __pyx_v_chrom2;
  int __pyx_v_pos2;
  int __pyx_v_flag;
  CYTHON_UNUSED PyObject *__pyx_v_qname = 0;
  __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_inferred_clip_type;
  int __pyx_v_good_clip;
  PyObject *__pyx_v_pnext = NULL;
  PyObject *__pyx_v_rnext = NULL;
  CYTHON_UNUSED long __pyx_v_add_primary_link;
  PyObject *__pyx_v_all_aligns = NULL;
  PyObject *__pyx_v_index = NULL;
  CYTHON_UNUSED PyObject *__pyx_v_event = NULL;
  CYTHON_UNUSED PyObject *__pyx_v__ = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  PyObject *(*__pyx_t_11)(PyObject *);
  Py_ssize_t __pyx_t_12;
  int __pyx_t_13;
  int __pyx_t_14;
  int __pyx_t_15;
  __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_t_16;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("process_alignment", 0);

  /* "dysgu/graph.pyx":974
 *     cdef bint current_overlaps_roi, next_overlaps_roi
 *     cdef bint add_primark_link, add_insertion_link
 *     cdef int chrom = r.rname             # <<<<<<<<<<<<<<
 *     cdef int chrom2 = r.rnext
 *     cdef int pos2 = r.pnext
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_rname); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 974, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 974, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_chrom = __pyx_t_2;

  /* "dysgu/graph.pyx":975
 *     cdef bint add_primark_link, add_insertion_link
 *     cdef int chrom = r.rname
 *     cdef int chrom2 = r.rnext             # <<<<<<<<<<<<<<
 *     cdef int pos2 = r.pnext
 *     cdef int flag = r.flag
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_rnext); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 975, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 975, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_chrom2 = __pyx_t_2;

  /* "dysgu/graph.pyx":976
 *     cdef int chrom = r.rname
 *     cdef int chrom2 = r.rnext
 *     cdef int pos2 = r.pnext             # <<<<<<<<<<<<<<
 *     cdef int flag = r.flag
 *     cdef int left_clip, right_clip
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_pnext); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 976, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 976, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_pos2 = __pyx_t_2;

  /* "dysgu/graph.pyx":977
 *     cdef int chrom2 = r.rnext
 *     cdef int pos2 = r.pnext
 *     cdef int flag = r.flag             # <<<<<<<<<<<<<<
 *     cdef int left_clip, right_clip
 *     cdef str qname = r.qname
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_flag); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 977, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 977, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_flag = __pyx_t_2;

  /* "dysgu/graph.pyx":979
 *     cdef int flag = r.flag
 *     cdef int left_clip, right_clip
 *     cdef str qname = r.qname             # <<<<<<<<<<<<<<
 *     cdef ReadEnum_t inferred_clip_type
 *     cdef uint64_t v
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_qname); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 979, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (!(likely(PyUnicode_CheckExact(__pyx_t_1))||((__pyx_t_1) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "unicode", Py_TYPE(__pyx_t_1)->tp_name), 0))) __PYX_ERR(1, 979, __pyx_L1_error)
  __pyx_v_qname = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":983
 *     cdef uint64_t v
 * 
 *     if paired_end and read_enum == SPLIT and flag & 8:  # clip event, or whole read, but mate is unmapped             # <<<<<<<<<<<<<<
 *         return
 * 
 */
  __pyx_t_4 = (__pyx_v_paired_end != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_3 = __pyx_t_4;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_4 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_SPLIT) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_3 = __pyx_t_4;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_4 = ((__pyx_v_flag & 8) != 0);
  __pyx_t_3 = __pyx_t_4;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":984
 * 
 *     if paired_end and read_enum == SPLIT and flag & 8:  # clip event, or whole read, but mate is unmapped
 *         return             # <<<<<<<<<<<<<<
 * 
 *     cdef bint success
 */
    goto __pyx_L0;

    /* "dysgu/graph.pyx":983
 *     cdef uint64_t v
 * 
 *     if paired_end and read_enum == SPLIT and flag & 8:  # clip event, or whole read, but mate is unmapped             # <<<<<<<<<<<<<<
 *         return
 * 
 */
  }

  /* "dysgu/graph.pyx":989
 *     cdef bint good_clip
 * 
 *     if site_adder:             # <<<<<<<<<<<<<<
 *         # sites are added as their SVTYPE
 *         # first step is to add_any_sites as SVTYPE, no edges are added here only nodes
 */
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_site_adder); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 989, __pyx_L1_error)
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":992
 *         # sites are added as their SVTYPE
 *         # first step is to add_any_sites as SVTYPE, no edges are added here only nodes
 *         if site_adder:             # <<<<<<<<<<<<<<
 *             site_adder.add_any_sites(r.rname, event_pos, G, pe_scope, node_to_name, clustering_dist)
 * 
 */
    __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_site_adder); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 992, __pyx_L1_error)
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":993
 *         # first step is to add_any_sites as SVTYPE, no edges are added here only nodes
 *         if site_adder:
 *             site_adder.add_any_sites(r.rname, event_pos, G, pe_scope, node_to_name, clustering_dist)             # <<<<<<<<<<<<<<
 * 
 *     if paired_end or flag & 1:
 */
      __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_site_adder, __pyx_n_s_add_any_sites); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 993, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_6 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_rname); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 993, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_event_pos); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 993, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_clustering_dist); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 993, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_9 = NULL;
      __pyx_t_2 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
        __pyx_t_9 = PyMethod_GET_SELF(__pyx_t_5);
        if (likely(__pyx_t_9)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
          __Pyx_INCREF(__pyx_t_9);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_5, function);
          __pyx_t_2 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[7] = {__pyx_t_9, __pyx_t_6, __pyx_t_7, __pyx_v_G, ((PyObject *)__pyx_v_pe_scope), ((PyObject *)__pyx_v_node_to_name), __pyx_t_8};
        __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 6+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 993, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[7] = {__pyx_t_9, __pyx_t_6, __pyx_t_7, __pyx_v_G, ((PyObject *)__pyx_v_pe_scope), ((PyObject *)__pyx_v_node_to_name), __pyx_t_8};
        __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 6+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 993, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      {
        __pyx_t_10 = PyTuple_New(6+__pyx_t_2); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 993, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_10);
        if (__pyx_t_9) {
          __Pyx_GIVEREF(__pyx_t_9); PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_9); __pyx_t_9 = NULL;
        }
        __Pyx_GIVEREF(__pyx_t_6);
        PyTuple_SET_ITEM(__pyx_t_10, 0+__pyx_t_2, __pyx_t_6);
        __Pyx_GIVEREF(__pyx_t_7);
        PyTuple_SET_ITEM(__pyx_t_10, 1+__pyx_t_2, __pyx_t_7);
        __Pyx_INCREF(__pyx_v_G);
        __Pyx_GIVEREF(__pyx_v_G);
        PyTuple_SET_ITEM(__pyx_t_10, 2+__pyx_t_2, __pyx_v_G);
        __Pyx_INCREF(((PyObject *)__pyx_v_pe_scope));
        __Pyx_GIVEREF(((PyObject *)__pyx_v_pe_scope));
        PyTuple_SET_ITEM(__pyx_t_10, 3+__pyx_t_2, ((PyObject *)__pyx_v_pe_scope));
        __Pyx_INCREF(((PyObject *)__pyx_v_node_to_name));
        __Pyx_GIVEREF(((PyObject *)__pyx_v_node_to_name));
        PyTuple_SET_ITEM(__pyx_t_10, 4+__pyx_t_2, ((PyObject *)__pyx_v_node_to_name));
        __Pyx_GIVEREF(__pyx_t_8);
        PyTuple_SET_ITEM(__pyx_t_10, 5+__pyx_t_2, __pyx_t_8);
        __pyx_t_6 = 0;
        __pyx_t_7 = 0;
        __pyx_t_8 = 0;
        __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_10, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 993, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      }
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

      /* "dysgu/graph.pyx":992
 *         # sites are added as their SVTYPE
 *         # first step is to add_any_sites as SVTYPE, no edges are added here only nodes
 *         if site_adder:             # <<<<<<<<<<<<<<
 *             site_adder.add_any_sites(r.rname, event_pos, G, pe_scope, node_to_name, clustering_dist)
 * 
 */
    }

    /* "dysgu/graph.pyx":989
 *     cdef bint good_clip
 * 
 *     if site_adder:             # <<<<<<<<<<<<<<
 *         # sites are added as their SVTYPE
 *         # first step is to add_any_sites as SVTYPE, no edges are added here only nodes
 */
  }

  /* "dysgu/graph.pyx":995
 *             site_adder.add_any_sites(r.rname, event_pos, G, pe_scope, node_to_name, clustering_dist)
 * 
 *     if paired_end or flag & 1:             # <<<<<<<<<<<<<<
 * 
 *         # Cluster paired-end mates
 */
  __pyx_t_4 = (__pyx_v_paired_end != 0);
  if (!__pyx_t_4) {
  } else {
    __pyx_t_3 = __pyx_t_4;
    goto __pyx_L10_bool_binop_done;
  }
  __pyx_t_4 = ((__pyx_v_flag & 1) != 0);
  __pyx_t_3 = __pyx_t_4;
  __pyx_L10_bool_binop_done:;
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":998
 * 
 *         # Cluster paired-end mates
 *         pnext = r.pnext             # <<<<<<<<<<<<<<
 *         rnext = r.rnext
 *         chrom2 = rnext
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_pnext); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 998, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_v_pnext = __pyx_t_1;
    __pyx_t_1 = 0;

    /* "dysgu/graph.pyx":999
 *         # Cluster paired-end mates
 *         pnext = r.pnext
 *         rnext = r.rnext             # <<<<<<<<<<<<<<
 *         chrom2 = rnext
 *         pos2 = pnext
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_rnext); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 999, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_v_rnext = __pyx_t_1;
    __pyx_t_1 = 0;

    /* "dysgu/graph.pyx":1000
 *         pnext = r.pnext
 *         rnext = r.rnext
 *         chrom2 = rnext             # <<<<<<<<<<<<<<
 *         pos2 = pnext
 * 
 */
    __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_v_rnext); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1000, __pyx_L1_error)
    __pyx_v_chrom2 = __pyx_t_2;

    /* "dysgu/graph.pyx":1001
 *         rnext = r.rnext
 *         chrom2 = rnext
 *         pos2 = pnext             # <<<<<<<<<<<<<<
 * 
 *         current_overlaps_roi = intersecter(overlap_regions, r.rname, event_pos, event_pos+1)
 */
    __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_v_pnext); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1001, __pyx_L1_error)
    __pyx_v_pos2 = __pyx_t_2;

    /* "dysgu/graph.pyx":1003
 *         pos2 = pnext
 * 
 *         current_overlaps_roi = intersecter(overlap_regions, r.rname, event_pos, event_pos+1)             # <<<<<<<<<<<<<<
 *         next_overlaps_roi = False
 *         if current_overlaps_roi:  # check if both sides of SV are in overlaps regions
 */
    __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_intersecter); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1003, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_10 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_rname); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1003, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_10);
    __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_event_pos); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1003, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __pyx_t_7 = __Pyx_PyInt_From_long((__pyx_v_event_pos + 1)); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1003, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_6 = NULL;
    __pyx_t_2 = 0;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_5))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_5);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_5, function);
        __pyx_t_2 = 1;
      }
    }
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(__pyx_t_5)) {
      PyObject *__pyx_temp[5] = {__pyx_t_6, __pyx_v_overlap_regions, __pyx_t_10, __pyx_t_8, __pyx_t_7};
      __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 4+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1003, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    } else
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(__pyx_t_5)) {
      PyObject *__pyx_temp[5] = {__pyx_t_6, __pyx_v_overlap_regions, __pyx_t_10, __pyx_t_8, __pyx_t_7};
      __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 4+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1003, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    } else
    #endif
    {
      __pyx_t_9 = PyTuple_New(4+__pyx_t_2); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1003, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      if (__pyx_t_6) {
        __Pyx_GIVEREF(__pyx_t_6); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_6); __pyx_t_6 = NULL;
      }
      __Pyx_INCREF(__pyx_v_overlap_regions);
      __Pyx_GIVEREF(__pyx_v_overlap_regions);
      PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_2, __pyx_v_overlap_regions);
      __Pyx_GIVEREF(__pyx_t_10);
      PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_2, __pyx_t_10);
      __Pyx_GIVEREF(__pyx_t_8);
      PyTuple_SET_ITEM(__pyx_t_9, 2+__pyx_t_2, __pyx_t_8);
      __Pyx_GIVEREF(__pyx_t_7);
      PyTuple_SET_ITEM(__pyx_t_9, 3+__pyx_t_2, __pyx_t_7);
      __pyx_t_10 = 0;
      __pyx_t_8 = 0;
      __pyx_t_7 = 0;
      __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_9, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1003, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
    }
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1003, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_current_overlaps_roi = __pyx_t_3;

    /* "dysgu/graph.pyx":1004
 * 
 *         current_overlaps_roi = intersecter(overlap_regions, r.rname, event_pos, event_pos+1)
 *         next_overlaps_roi = False             # <<<<<<<<<<<<<<
 *         if current_overlaps_roi:  # check if both sides of SV are in overlaps regions
 *             next_overlaps_roi = intersecter(overlap_regions, chrom2, pos2, pnext+1)
 */
    __pyx_v_next_overlaps_roi = 0;

    /* "dysgu/graph.pyx":1005
 *         current_overlaps_roi = intersecter(overlap_regions, r.rname, event_pos, event_pos+1)
 *         next_overlaps_roi = False
 *         if current_overlaps_roi:  # check if both sides of SV are in overlaps regions             # <<<<<<<<<<<<<<
 *             next_overlaps_roi = intersecter(overlap_regions, chrom2, pos2, pnext+1)
 * 
 */
    __pyx_t_3 = (__pyx_v_current_overlaps_roi != 0);
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":1006
 *         next_overlaps_roi = False
 *         if current_overlaps_roi:  # check if both sides of SV are in overlaps regions
 *             next_overlaps_roi = intersecter(overlap_regions, chrom2, pos2, pnext+1)             # <<<<<<<<<<<<<<
 * 
 *         # Special treatment of supplementary and local reads; need to decide where the partner is
 */
      __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_intersecter); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1006, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_9 = __Pyx_PyInt_From_int(__pyx_v_chrom2); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1006, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_pos2); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1006, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __pyx_t_8 = __Pyx_PyInt_AddObjC(__pyx_v_pnext, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1006, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_10 = NULL;
      __pyx_t_2 = 0;
      if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_5))) {
        __pyx_t_10 = PyMethod_GET_SELF(__pyx_t_5);
        if (likely(__pyx_t_10)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
          __Pyx_INCREF(__pyx_t_10);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_5, function);
          __pyx_t_2 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[5] = {__pyx_t_10, __pyx_v_overlap_regions, __pyx_t_9, __pyx_t_7, __pyx_t_8};
        __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 4+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1006, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[5] = {__pyx_t_10, __pyx_v_overlap_regions, __pyx_t_9, __pyx_t_7, __pyx_t_8};
        __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 4+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1006, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      {
        __pyx_t_6 = PyTuple_New(4+__pyx_t_2); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1006, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_6);
        if (__pyx_t_10) {
          __Pyx_GIVEREF(__pyx_t_10); PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_t_10); __pyx_t_10 = NULL;
        }
        __Pyx_INCREF(__pyx_v_overlap_regions);
        __Pyx_GIVEREF(__pyx_v_overlap_regions);
        PyTuple_SET_ITEM(__pyx_t_6, 0+__pyx_t_2, __pyx_v_overlap_regions);
        __Pyx_GIVEREF(__pyx_t_9);
        PyTuple_SET_ITEM(__pyx_t_6, 1+__pyx_t_2, __pyx_t_9);
        __Pyx_GIVEREF(__pyx_t_7);
        PyTuple_SET_ITEM(__pyx_t_6, 2+__pyx_t_2, __pyx_t_7);
        __Pyx_GIVEREF(__pyx_t_8);
        PyTuple_SET_ITEM(__pyx_t_6, 3+__pyx_t_2, __pyx_t_8);
        __pyx_t_9 = 0;
        __pyx_t_7 = 0;
        __pyx_t_8 = 0;
        __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_6, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1006, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      }
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1006, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __pyx_v_next_overlaps_roi = __pyx_t_3;

      /* "dysgu/graph.pyx":1005
 *         current_overlaps_roi = intersecter(overlap_regions, r.rname, event_pos, event_pos+1)
 *         next_overlaps_roi = False
 *         if current_overlaps_roi:  # check if both sides of SV are in overlaps regions             # <<<<<<<<<<<<<<
 *             next_overlaps_roi = intersecter(overlap_regions, chrom2, pos2, pnext+1)
 * 
 */
    }

    /* "dysgu/graph.pyx":1012
 *         # same loci as the read which leads to problems when linking w=2 edges
 * 
 *         add_primary_link = 1             # <<<<<<<<<<<<<<
 *         add_insertion_link = 0
 * 
 */
    __pyx_v_add_primary_link = 1;

    /* "dysgu/graph.pyx":1013
 * 
 *         add_primary_link = 1
 *         add_insertion_link = 0             # <<<<<<<<<<<<<<
 * 
 *         good_clip = good_quality_clip(r, 15)
 */
    __pyx_v_add_insertion_link = 0;

    /* "dysgu/graph.pyx":1015
 *         add_insertion_link = 0
 * 
 *         good_clip = good_quality_clip(r, 15)             # <<<<<<<<<<<<<<
 *         if not good_clip:
 *             bad_clip_counter.add(chrom, r.pos)
 */
    __pyx_v_good_clip = __pyx_f_5dysgu_5graph_good_quality_clip(__pyx_v_r, 15);

    /* "dysgu/graph.pyx":1016
 * 
 *         good_clip = good_quality_clip(r, 15)
 *         if not good_clip:             # <<<<<<<<<<<<<<
 *             bad_clip_counter.add(chrom, r.pos)
 * 
 */
    __pyx_t_3 = ((!(__pyx_v_good_clip != 0)) != 0);
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":1017
 *         good_clip = good_quality_clip(r, 15)
 *         if not good_clip:
 *             bad_clip_counter.add(chrom, r.pos)             # <<<<<<<<<<<<<<
 * 
 *         if read_enum == SPLIT:
 */
      __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_bad_clip_counter, __pyx_n_s_add); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1017, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_chrom); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1017, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_8 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_pos); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1017, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_7 = NULL;
      __pyx_t_2 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
        __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_5);
        if (likely(__pyx_t_7)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
          __Pyx_INCREF(__pyx_t_7);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_5, function);
          __pyx_t_2 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_t_6, __pyx_t_8};
        __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 2+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1017, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_t_6, __pyx_t_8};
        __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_2, 2+__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1017, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      } else
      #endif
      {
        __pyx_t_9 = PyTuple_New(2+__pyx_t_2); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1017, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_9);
        if (__pyx_t_7) {
          __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_7); __pyx_t_7 = NULL;
        }
        __Pyx_GIVEREF(__pyx_t_6);
        PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_2, __pyx_t_6);
        __Pyx_GIVEREF(__pyx_t_8);
        PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_2, __pyx_t_8);
        __pyx_t_6 = 0;
        __pyx_t_8 = 0;
        __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_9, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1017, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      }
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

      /* "dysgu/graph.pyx":1016
 * 
 *         good_clip = good_quality_clip(r, 15)
 *         if not good_clip:             # <<<<<<<<<<<<<<
 *             bad_clip_counter.add(chrom, r.pos)
 * 
 */
    }

    /* "dysgu/graph.pyx":1019
 *             bad_clip_counter.add(chrom, r.pos)
 * 
 *         if read_enum == SPLIT:             # <<<<<<<<<<<<<<
 *             # Parse SA tag. For paired reads
 *             if r.has_tag("SA") and good_clip:  # Parse SA, first alignment is the other read primary alignment
 */
    switch (__pyx_v_read_enum) {
      case __pyx_e_5dysgu_5graph_SPLIT:

      /* "dysgu/graph.pyx":1021
 *         if read_enum == SPLIT:
 *             # Parse SA tag. For paired reads
 *             if r.has_tag("SA") and good_clip:  # Parse SA, first alignment is the other read primary alignment             # <<<<<<<<<<<<<<
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 *                 event = all_aligns[index]
 */
      __pyx_t_1 = ((struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment *)__pyx_v_r->__pyx_vtab)->has_tag(__pyx_v_r, __pyx_n_u_SA, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1021, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1021, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      if (__pyx_t_4) {
      } else {
        __pyx_t_3 = __pyx_t_4;
        goto __pyx_L15_bool_binop_done;
      }
      __pyx_t_4 = (__pyx_v_good_clip != 0);
      __pyx_t_3 = __pyx_t_4;
      __pyx_L15_bool_binop_done:;
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1022
 *             # Parse SA tag. For paired reads
 *             if r.has_tag("SA") and good_clip:  # Parse SA, first alignment is the other read primary alignment
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)             # <<<<<<<<<<<<<<
 *                 event = all_aligns[index]
 *                 if len(all_aligns) == 1:
 */
        __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_loci_dist); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1022, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_paired_end); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1022, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        __pyx_t_9 = __Pyx_PyInt_From_int(__pyx_v_mapq_thresh); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1022, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_9);
        __pyx_t_8 = __pyx_f_5dysgu_5graph_alignments_from_sa_tag(((PyObject *)__pyx_v_r), __pyx_v_gettid, __pyx_t_1, __pyx_t_5, __pyx_t_9); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1022, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_8);
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
        __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        if ((likely(PyTuple_CheckExact(__pyx_t_8))) || (PyList_CheckExact(__pyx_t_8))) {
          PyObject* sequence = __pyx_t_8;
          Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
          if (unlikely(size != 2)) {
            if (size > 2) __Pyx_RaiseTooManyValuesError(2);
            else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
            __PYX_ERR(1, 1022, __pyx_L1_error)
          }
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          if (likely(PyTuple_CheckExact(sequence))) {
            __pyx_t_9 = PyTuple_GET_ITEM(sequence, 0); 
            __pyx_t_5 = PyTuple_GET_ITEM(sequence, 1); 
          } else {
            __pyx_t_9 = PyList_GET_ITEM(sequence, 0); 
            __pyx_t_5 = PyList_GET_ITEM(sequence, 1); 
          }
          __Pyx_INCREF(__pyx_t_9);
          __Pyx_INCREF(__pyx_t_5);
          #else
          __pyx_t_9 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1022, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_9);
          __pyx_t_5 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1022, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        } else {
          Py_ssize_t index = -1;
          __pyx_t_1 = PyObject_GetIter(__pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1022, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __pyx_t_11 = Py_TYPE(__pyx_t_1)->tp_iternext;
          index = 0; __pyx_t_9 = __pyx_t_11(__pyx_t_1); if (unlikely(!__pyx_t_9)) goto __pyx_L17_unpacking_failed;
          __Pyx_GOTREF(__pyx_t_9);
          index = 1; __pyx_t_5 = __pyx_t_11(__pyx_t_1); if (unlikely(!__pyx_t_5)) goto __pyx_L17_unpacking_failed;
          __Pyx_GOTREF(__pyx_t_5);
          if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_1), 2) < 0) __PYX_ERR(1, 1022, __pyx_L1_error)
          __pyx_t_11 = NULL;
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          goto __pyx_L18_unpacking_done;
          __pyx_L17_unpacking_failed:;
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_t_11 = NULL;
          if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
          __PYX_ERR(1, 1022, __pyx_L1_error)
          __pyx_L18_unpacking_done:;
        }
        __pyx_v_all_aligns = __pyx_t_9;
        __pyx_t_9 = 0;
        __pyx_v_index = __pyx_t_5;
        __pyx_t_5 = 0;

        /* "dysgu/graph.pyx":1023
 *             if r.has_tag("SA") and good_clip:  # Parse SA, first alignment is the other read primary alignment
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 *                 event = all_aligns[index]             # <<<<<<<<<<<<<<
 *                 if len(all_aligns) == 1:
 *                     return
 */
        __pyx_t_8 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_v_index); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1023, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_8);
        __pyx_v_event = __pyx_t_8;
        __pyx_t_8 = 0;

        /* "dysgu/graph.pyx":1024
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 *                 event = all_aligns[index]
 *                 if len(all_aligns) == 1:             # <<<<<<<<<<<<<<
 *                     return
 * 
 */
        __pyx_t_12 = PyObject_Length(__pyx_v_all_aligns); if (unlikely(__pyx_t_12 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1024, __pyx_L1_error)
        __pyx_t_3 = ((__pyx_t_12 == 1) != 0);
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1025
 *                 event = all_aligns[index]
 *                 if len(all_aligns) == 1:
 *                     return             # <<<<<<<<<<<<<<
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next
 */
          goto __pyx_L0;

          /* "dysgu/graph.pyx":1024
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 *                 event = all_aligns[index]
 *                 if len(all_aligns) == 1:             # <<<<<<<<<<<<<<
 *                     return
 * 
 */
        }

        /* "dysgu/graph.pyx":1027
 *                     return
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1
 */
        __pyx_t_12 = PyObject_Length(__pyx_v_all_aligns); if (unlikely(__pyx_t_12 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1027, __pyx_L1_error)
        __pyx_t_8 = PyInt_FromSsize_t((__pyx_t_12 - 1)); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1027, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_8);
        __pyx_t_5 = PyObject_RichCompare(__pyx_v_index, __pyx_t_8, Py_LT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1027, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1027, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1028
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)             # <<<<<<<<<<<<<<
 *                     cigar_index = len(r.cigartuples) - 1
 *                     if inferred_clip_type == BREAKEND:
 */
          __pyx_t_5 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_v_index); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_8 = __Pyx_PyInt_AddObjC(__pyx_v_index, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_8);
          __pyx_t_9 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_t_8); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_9);
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_paired_end); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_8);
          __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_loci_dist); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_mapq_thresh); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_6);
          __pyx_t_7 = __pyx_f_5dysgu_5graph_connect_right(__pyx_t_5, __pyx_t_9, ((PyObject *)__pyx_v_r), __pyx_t_8, __pyx_t_1, __pyx_t_6); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
          if ((likely(PyTuple_CheckExact(__pyx_t_7))) || (PyList_CheckExact(__pyx_t_7))) {
            PyObject* sequence = __pyx_t_7;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 5)) {
              if (size > 5) __Pyx_RaiseTooManyValuesError(5);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 1028, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_6 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_1 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_8 = PyTuple_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyTuple_GET_ITEM(sequence, 3); 
              __pyx_t_5 = PyTuple_GET_ITEM(sequence, 4); 
            } else {
              __pyx_t_6 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_1 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_8 = PyList_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyList_GET_ITEM(sequence, 3); 
              __pyx_t_5 = PyList_GET_ITEM(sequence, 4); 
            }
            __Pyx_INCREF(__pyx_t_6);
            __Pyx_INCREF(__pyx_t_1);
            __Pyx_INCREF(__pyx_t_8);
            __Pyx_INCREF(__pyx_t_9);
            __Pyx_INCREF(__pyx_t_5);
            #else
            {
              Py_ssize_t i;
              PyObject** temps[5] = {&__pyx_t_6,&__pyx_t_1,&__pyx_t_8,&__pyx_t_9,&__pyx_t_5};
              for (i=0; i < 5; i++) {
                PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) __PYX_ERR(1, 1028, __pyx_L1_error)
                __Pyx_GOTREF(item);
                *(temps[i]) = item;
              }
            }
            #endif
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          } else {
            Py_ssize_t index = -1;
            PyObject** temps[5] = {&__pyx_t_6,&__pyx_t_1,&__pyx_t_8,&__pyx_t_9,&__pyx_t_5};
            __pyx_t_10 = PyObject_GetIter(__pyx_t_7); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1028, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_10);
            __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
            __pyx_t_11 = Py_TYPE(__pyx_t_10)->tp_iternext;
            for (index=0; index < 5; index++) {
              PyObject* item = __pyx_t_11(__pyx_t_10); if (unlikely(!item)) goto __pyx_L21_unpacking_failed;
              __Pyx_GOTREF(item);
              *(temps[index]) = item;
            }
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_10), 5) < 0) __PYX_ERR(1, 1028, __pyx_L1_error)
            __pyx_t_11 = NULL;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            goto __pyx_L22_unpacking_done;
            __pyx_L21_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            __pyx_t_11 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 1028, __pyx_L1_error)
            __pyx_L22_unpacking_done:;
          }
          __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
          __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_t_14 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_14 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __pyx_t_15 = __Pyx_PyInt_As_int(__pyx_t_9); if (unlikely((__pyx_t_15 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __pyx_t_16 = ((__pyx_t_5dysgu_5graph_ReadEnum_t)__Pyx_PyInt_As___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_t_5)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 1028, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_v_event_pos = __pyx_t_2;
          __pyx_v_chrom = __pyx_t_13;
          __pyx_v_pos2 = __pyx_t_14;
          __pyx_v_chrom2 = __pyx_t_15;
          __pyx_v_inferred_clip_type = __pyx_t_16;

          /* "dysgu/graph.pyx":1029
 *                 if index < len(all_aligns) - 1:  # connect to next
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1             # <<<<<<<<<<<<<<
 *                     if inferred_clip_type == BREAKEND:
 *                         read_enum = ReadEnum_t.BREAKEND
 */
          __pyx_t_7 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1029, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __pyx_t_12 = PyObject_Length(__pyx_t_7); if (unlikely(__pyx_t_12 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1029, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_v_cigar_index = (__pyx_t_12 - 1);

          /* "dysgu/graph.pyx":1030
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1
 *                     if inferred_clip_type == BREAKEND:             # <<<<<<<<<<<<<<
 *                         read_enum = ReadEnum_t.BREAKEND
 * 
 */
          __pyx_t_3 = ((__pyx_v_inferred_clip_type == __pyx_e_5dysgu_5graph_BREAKEND) != 0);
          if (__pyx_t_3) {

            /* "dysgu/graph.pyx":1031
 *                     cigar_index = len(r.cigartuples) - 1
 *                     if inferred_clip_type == BREAKEND:
 *                         read_enum = ReadEnum_t.BREAKEND             # <<<<<<<<<<<<<<
 * 
 *                 if index > 0:
 */
            __pyx_v_read_enum = __pyx_e_5dysgu_5graph_BREAKEND;

            /* "dysgu/graph.pyx":1030
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1
 *                     if inferred_clip_type == BREAKEND:             # <<<<<<<<<<<<<<
 *                         read_enum = ReadEnum_t.BREAKEND
 * 
 */
          }

          /* "dysgu/graph.pyx":1027
 *                     return
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1
 */
        }

        /* "dysgu/graph.pyx":1033
 *                         read_enum = ReadEnum_t.BREAKEND
 * 
 *                 if index > 0:             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = 0
 */
        __pyx_t_7 = PyObject_RichCompare(__pyx_v_index, __pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1033, __pyx_L1_error)
        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1033, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1034
 * 
 *                 if index > 0:
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)             # <<<<<<<<<<<<<<
 *                     cigar_index = 0
 *                     if inferred_clip_type == BREAKEND:
 */
          __pyx_t_7 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_v_index); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __pyx_t_5 = __Pyx_PyInt_SubtractObjC(__pyx_v_index, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_9 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_t_5); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_9);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_paired_end); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_loci_dist); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_8);
          __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_mapq_thresh); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __pyx_t_6 = __pyx_f_5dysgu_5graph_connect_left(__pyx_t_7, __pyx_t_9, ((PyObject *)__pyx_v_r), __pyx_t_5, __pyx_t_8, __pyx_t_1); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_6);
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          if ((likely(PyTuple_CheckExact(__pyx_t_6))) || (PyList_CheckExact(__pyx_t_6))) {
            PyObject* sequence = __pyx_t_6;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 5)) {
              if (size > 5) __Pyx_RaiseTooManyValuesError(5);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 1034, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_1 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_8 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_5 = PyTuple_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyTuple_GET_ITEM(sequence, 3); 
              __pyx_t_7 = PyTuple_GET_ITEM(sequence, 4); 
            } else {
              __pyx_t_1 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_8 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_5 = PyList_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyList_GET_ITEM(sequence, 3); 
              __pyx_t_7 = PyList_GET_ITEM(sequence, 4); 
            }
            __Pyx_INCREF(__pyx_t_1);
            __Pyx_INCREF(__pyx_t_8);
            __Pyx_INCREF(__pyx_t_5);
            __Pyx_INCREF(__pyx_t_9);
            __Pyx_INCREF(__pyx_t_7);
            #else
            {
              Py_ssize_t i;
              PyObject** temps[5] = {&__pyx_t_1,&__pyx_t_8,&__pyx_t_5,&__pyx_t_9,&__pyx_t_7};
              for (i=0; i < 5; i++) {
                PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) __PYX_ERR(1, 1034, __pyx_L1_error)
                __Pyx_GOTREF(item);
                *(temps[i]) = item;
              }
            }
            #endif
            __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
          } else {
            Py_ssize_t index = -1;
            PyObject** temps[5] = {&__pyx_t_1,&__pyx_t_8,&__pyx_t_5,&__pyx_t_9,&__pyx_t_7};
            __pyx_t_10 = PyObject_GetIter(__pyx_t_6); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1034, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_10);
            __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
            __pyx_t_11 = Py_TYPE(__pyx_t_10)->tp_iternext;
            for (index=0; index < 5; index++) {
              PyObject* item = __pyx_t_11(__pyx_t_10); if (unlikely(!item)) goto __pyx_L25_unpacking_failed;
              __Pyx_GOTREF(item);
              *(temps[index]) = item;
            }
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_10), 5) < 0) __PYX_ERR(1, 1034, __pyx_L1_error)
            __pyx_t_11 = NULL;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            goto __pyx_L26_unpacking_done;
            __pyx_L25_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            __pyx_t_11 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 1034, __pyx_L1_error)
            __pyx_L26_unpacking_done:;
          }
          __pyx_t_15 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_15 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_t_14 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_14 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_9); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __pyx_t_16 = ((__pyx_t_5dysgu_5graph_ReadEnum_t)__Pyx_PyInt_As___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_t_7)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 1034, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_v_event_pos = __pyx_t_15;
          __pyx_v_chrom = __pyx_t_14;
          __pyx_v_pos2 = __pyx_t_13;
          __pyx_v_chrom2 = __pyx_t_2;
          __pyx_v_inferred_clip_type = __pyx_t_16;

          /* "dysgu/graph.pyx":1035
 *                 if index > 0:
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = 0             # <<<<<<<<<<<<<<
 *                     if inferred_clip_type == BREAKEND:
 *                         read_enum = ReadEnum_t.BREAKEND
 */
          __pyx_v_cigar_index = 0;

          /* "dysgu/graph.pyx":1036
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = 0
 *                     if inferred_clip_type == BREAKEND:             # <<<<<<<<<<<<<<
 *                         read_enum = ReadEnum_t.BREAKEND
 * 
 */
          __pyx_t_3 = ((__pyx_v_inferred_clip_type == __pyx_e_5dysgu_5graph_BREAKEND) != 0);
          if (__pyx_t_3) {

            /* "dysgu/graph.pyx":1037
 *                     cigar_index = 0
 *                     if inferred_clip_type == BREAKEND:
 *                         read_enum = ReadEnum_t.BREAKEND             # <<<<<<<<<<<<<<
 * 
 *         elif read_enum == DISCORDANT:
 */
            __pyx_v_read_enum = __pyx_e_5dysgu_5graph_BREAKEND;

            /* "dysgu/graph.pyx":1036
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = 0
 *                     if inferred_clip_type == BREAKEND:             # <<<<<<<<<<<<<<
 *                         read_enum = ReadEnum_t.BREAKEND
 * 
 */
          }

          /* "dysgu/graph.pyx":1033
 *                         read_enum = ReadEnum_t.BREAKEND
 * 
 *                 if index > 0:             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, inferred_clip_type = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = 0
 */
        }

        /* "dysgu/graph.pyx":1021
 *         if read_enum == SPLIT:
 *             # Parse SA tag. For paired reads
 *             if r.has_tag("SA") and good_clip:  # Parse SA, first alignment is the other read primary alignment             # <<<<<<<<<<<<<<
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 *                 event = all_aligns[index]
 */
      }

      /* "dysgu/graph.pyx":1019
 *             bad_clip_counter.add(chrom, r.pos)
 * 
 *         if read_enum == SPLIT:             # <<<<<<<<<<<<<<
 *             # Parse SA tag. For paired reads
 *             if r.has_tag("SA") and good_clip:  # Parse SA, first alignment is the other read primary alignment
 */
      break;
      case __pyx_e_5dysgu_5graph_DISCORDANT:

      /* "dysgu/graph.pyx":1039
 *                         read_enum = ReadEnum_t.BREAKEND
 * 
 *         elif read_enum == DISCORDANT:             # <<<<<<<<<<<<<<
 *             pass  # rnext and pnext set as above
 * 
 */
      break;
      default: break;
    }

    /* "dysgu/graph.pyx":1042
 *             pass  # rnext and pnext set as above
 * 
 *         if read_enum == BREAKEND:             # <<<<<<<<<<<<<<
 *             if mm_only and current_overlaps_roi and next_overlaps_roi:
 *                 # Probably too many reads in ROI to reliably separate out break end reads
 */
    __pyx_t_3 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_BREAKEND) != 0);
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":1043
 * 
 *         if read_enum == BREAKEND:
 *             if mm_only and current_overlaps_roi and next_overlaps_roi:             # <<<<<<<<<<<<<<
 *                 # Probably too many reads in ROI to reliably separate out break end reads
 *                 return
 */
      __pyx_t_4 = (__pyx_v_mm_only != 0);
      if (__pyx_t_4) {
      } else {
        __pyx_t_3 = __pyx_t_4;
        goto __pyx_L30_bool_binop_done;
      }
      __pyx_t_4 = (__pyx_v_current_overlaps_roi != 0);
      if (__pyx_t_4) {
      } else {
        __pyx_t_3 = __pyx_t_4;
        goto __pyx_L30_bool_binop_done;
      }
      __pyx_t_4 = (__pyx_v_next_overlaps_roi != 0);
      __pyx_t_3 = __pyx_t_4;
      __pyx_L30_bool_binop_done:;
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1045
 *             if mm_only and current_overlaps_roi and next_overlaps_roi:
 *                 # Probably too many reads in ROI to reliably separate out break end reads
 *                 return             # <<<<<<<<<<<<<<
 *             if good_clip and cigar_clip(r, clip_l):
 *                 chrom2 = 10000000
 */
        goto __pyx_L0;

        /* "dysgu/graph.pyx":1043
 * 
 *         if read_enum == BREAKEND:
 *             if mm_only and current_overlaps_roi and next_overlaps_roi:             # <<<<<<<<<<<<<<
 *                 # Probably too many reads in ROI to reliably separate out break end reads
 *                 return
 */
      }

      /* "dysgu/graph.pyx":1046
 *                 # Probably too many reads in ROI to reliably separate out break end reads
 *                 return
 *             if good_clip and cigar_clip(r, clip_l):             # <<<<<<<<<<<<<<
 *                 chrom2 = 10000000
 *                 pos2 = event_pos
 */
      __pyx_t_4 = (__pyx_v_good_clip != 0);
      if (__pyx_t_4) {
      } else {
        __pyx_t_3 = __pyx_t_4;
        goto __pyx_L34_bool_binop_done;
      }
      __pyx_t_4 = (__pyx_f_5dysgu_13map_set_utils_cigar_clip(((PyObject *)__pyx_v_r), __pyx_v_clip_l) != 0);
      __pyx_t_3 = __pyx_t_4;
      __pyx_L34_bool_binop_done:;
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1047
 *                 return
 *             if good_clip and cigar_clip(r, clip_l):
 *                 chrom2 = 10000000             # <<<<<<<<<<<<<<
 *                 pos2 = event_pos
 *             else:
 */
        __pyx_v_chrom2 = 0x989680;

        /* "dysgu/graph.pyx":1048
 *             if good_clip and cigar_clip(r, clip_l):
 *                 chrom2 = 10000000
 *                 pos2 = event_pos             # <<<<<<<<<<<<<<
 *             else:
 *                 return
 */
        __pyx_v_pos2 = __pyx_v_event_pos;

        /* "dysgu/graph.pyx":1046
 *                 # Probably too many reads in ROI to reliably separate out break end reads
 *                 return
 *             if good_clip and cigar_clip(r, clip_l):             # <<<<<<<<<<<<<<
 *                 chrom2 = 10000000
 *                 pos2 = event_pos
 */
        goto __pyx_L33;
      }

      /* "dysgu/graph.pyx":1050
 *                 pos2 = event_pos
 *             else:
 *                 return             # <<<<<<<<<<<<<<
 * 
 *         if read_enum == DELETION or read_enum == INSERTION:  # DELETION or INSERTION within read
 */
      /*else*/ {
        goto __pyx_L0;
      }
      __pyx_L33:;

      /* "dysgu/graph.pyx":1042
 *             pass  # rnext and pnext set as above
 * 
 *         if read_enum == BREAKEND:             # <<<<<<<<<<<<<<
 *             if mm_only and current_overlaps_roi and next_overlaps_roi:
 *                 # Probably too many reads in ROI to reliably separate out break end reads
 */
    }

    /* "dysgu/graph.pyx":1052
 *                 return
 * 
 *         if read_enum == DELETION or read_enum == INSERTION:  # DELETION or INSERTION within read             # <<<<<<<<<<<<<<
 *             chrom2 = chrom
 *             if r.cigartuples[cigar_index][0] != 1:  # not insertion, use length of cigar event
 */
    switch (__pyx_v_read_enum) {
      case __pyx_e_5dysgu_5graph_DELETION:
      case __pyx_e_5dysgu_5graph_INSERTION:

      /* "dysgu/graph.pyx":1053
 * 
 *         if read_enum == DELETION or read_enum == INSERTION:  # DELETION or INSERTION within read
 *             chrom2 = chrom             # <<<<<<<<<<<<<<
 *             if r.cigartuples[cigar_index][0] != 1:  # not insertion, use length of cigar event
 *                 pos2 = cigar_pos2
 */
      __pyx_v_chrom2 = __pyx_v_chrom;

      /* "dysgu/graph.pyx":1054
 *         if read_enum == DELETION or read_enum == INSERTION:  # DELETION or INSERTION within read
 *             chrom2 = chrom
 *             if r.cigartuples[cigar_index][0] != 1:  # not insertion, use length of cigar event             # <<<<<<<<<<<<<<
 *                 pos2 = cigar_pos2
 *             else:
 */
      __pyx_t_6 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1054, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_7 = __Pyx_GetItemInt(__pyx_t_6, __pyx_v_cigar_index, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1054, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      __pyx_t_6 = __Pyx_GetItemInt(__pyx_t_7, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1054, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      __pyx_t_7 = __Pyx_PyInt_NeObjC(__pyx_t_6, __pyx_int_1, 1, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1054, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1054, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1055
 *             chrom2 = chrom
 *             if r.cigartuples[cigar_index][0] != 1:  # not insertion, use length of cigar event
 *                 pos2 = cigar_pos2             # <<<<<<<<<<<<<<
 *             else:
 *                 pos2 = event_pos
 */
        __pyx_v_pos2 = __pyx_v_cigar_pos2;

        /* "dysgu/graph.pyx":1054
 *         if read_enum == DELETION or read_enum == INSERTION:  # DELETION or INSERTION within read
 *             chrom2 = chrom
 *             if r.cigartuples[cigar_index][0] != 1:  # not insertion, use length of cigar event             # <<<<<<<<<<<<<<
 *                 pos2 = cigar_pos2
 *             else:
 */
        goto __pyx_L36;
      }

      /* "dysgu/graph.pyx":1057
 *                 pos2 = cigar_pos2
 *             else:
 *                 pos2 = event_pos             # <<<<<<<<<<<<<<
 * 
 *         add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 */
      /*else*/ {
        __pyx_v_pos2 = __pyx_v_event_pos;
      }
      __pyx_L36:;

      /* "dysgu/graph.pyx":1052
 *                 return
 * 
 *         if read_enum == DELETION or read_enum == INSERTION:  # DELETION or INSERTION within read             # <<<<<<<<<<<<<<
 *             chrom2 = chrom
 *             if r.cigartuples[cigar_index][0] != 1:  # not insertion, use length of cigar event
 */
      break;
      default: break;
    }

    /* "dysgu/graph.pyx":1060
 * 
 *         add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 *                                tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum, current_overlaps_roi, next_overlaps_roi,             # <<<<<<<<<<<<<<
 *                                mm_only, clip_l, site_adder, length_from_cigar, trust_ins_len)
 * 
 */
    __pyx_t_7 = __Pyx_PyInt_From_long(__pyx_v_tell); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1060, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);

    /* "dysgu/graph.pyx":1059
 *                 pos2 = event_pos
 * 
 *         add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,             # <<<<<<<<<<<<<<
 *                                tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum, current_overlaps_roi, next_overlaps_roi,
 *                                mm_only, clip_l, site_adder, length_from_cigar, trust_ins_len)
 */
    __pyx_f_5dysgu_5graph_add_to_graph(__pyx_v_G, __pyx_v_r, __pyx_v_pe_scope, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_genome_scanner, __pyx_v_flag, __pyx_v_chrom, __pyx_t_7, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_chrom2, __pyx_v_pos2, __pyx_v_clip_scope, __pyx_v_read_enum, __pyx_v_current_overlaps_roi, __pyx_v_next_overlaps_roi, __pyx_v_mm_only, __pyx_v_clip_l, __pyx_v_site_adder, __pyx_v_length_from_cigar, __pyx_v_trust_ins_len);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

    /* "dysgu/graph.pyx":995
 *             site_adder.add_any_sites(r.rname, event_pos, G, pe_scope, node_to_name, clustering_dist)
 * 
 *     if paired_end or flag & 1:             # <<<<<<<<<<<<<<
 * 
 *         # Cluster paired-end mates
 */
    goto __pyx_L9;
  }

  /* "dysgu/graph.pyx":1065
 *     ###
 *     else:  # Single end
 *         current_overlaps_roi, next_overlaps_roi = False, False  # not supported yet             # <<<<<<<<<<<<<<
 *         if read_enum == SPLIT:
 *             # Use SA tag to get chrom2 and pos2
 */
  /*else*/ {
    __pyx_t_3 = 0;
    __pyx_t_4 = 0;
    __pyx_v_current_overlaps_roi = __pyx_t_3;
    __pyx_v_next_overlaps_roi = __pyx_t_4;

    /* "dysgu/graph.pyx":1066
 *     else:  # Single end
 *         current_overlaps_roi, next_overlaps_roi = False, False  # not supported yet
 *         if read_enum == SPLIT:             # <<<<<<<<<<<<<<
 *             # Use SA tag to get chrom2 and pos2
 *             if r.has_tag("SA"):
 */
    __pyx_t_4 = ((__pyx_v_read_enum == __pyx_e_5dysgu_5graph_SPLIT) != 0);
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":1068
 *         if read_enum == SPLIT:
 *             # Use SA tag to get chrom2 and pos2
 *             if r.has_tag("SA"):             # <<<<<<<<<<<<<<
 * 
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 */
      __pyx_t_7 = ((struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment *)__pyx_v_r->__pyx_vtab)->has_tag(__pyx_v_r, __pyx_n_u_SA, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1068, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1068, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      if (__pyx_t_4) {

        /* "dysgu/graph.pyx":1070
 *             if r.has_tag("SA"):
 * 
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)             # <<<<<<<<<<<<<<
 *                 event = all_aligns[index]
 * 
 */
        __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_loci_dist); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1070, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_paired_end); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1070, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_6);
        __pyx_t_9 = __Pyx_PyInt_From_int(__pyx_v_mapq_thresh); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1070, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_9);
        __pyx_t_5 = __pyx_f_5dysgu_5graph_alignments_from_sa_tag(((PyObject *)__pyx_v_r), __pyx_v_gettid, __pyx_t_7, __pyx_t_6, __pyx_t_9); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1070, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        if ((likely(PyTuple_CheckExact(__pyx_t_5))) || (PyList_CheckExact(__pyx_t_5))) {
          PyObject* sequence = __pyx_t_5;
          Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
          if (unlikely(size != 2)) {
            if (size > 2) __Pyx_RaiseTooManyValuesError(2);
            else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
            __PYX_ERR(1, 1070, __pyx_L1_error)
          }
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          if (likely(PyTuple_CheckExact(sequence))) {
            __pyx_t_9 = PyTuple_GET_ITEM(sequence, 0); 
            __pyx_t_6 = PyTuple_GET_ITEM(sequence, 1); 
          } else {
            __pyx_t_9 = PyList_GET_ITEM(sequence, 0); 
            __pyx_t_6 = PyList_GET_ITEM(sequence, 1); 
          }
          __Pyx_INCREF(__pyx_t_9);
          __Pyx_INCREF(__pyx_t_6);
          #else
          __pyx_t_9 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1070, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_9);
          __pyx_t_6 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1070, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_6);
          #endif
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        } else {
          Py_ssize_t index = -1;
          __pyx_t_7 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1070, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_11 = Py_TYPE(__pyx_t_7)->tp_iternext;
          index = 0; __pyx_t_9 = __pyx_t_11(__pyx_t_7); if (unlikely(!__pyx_t_9)) goto __pyx_L39_unpacking_failed;
          __Pyx_GOTREF(__pyx_t_9);
          index = 1; __pyx_t_6 = __pyx_t_11(__pyx_t_7); if (unlikely(!__pyx_t_6)) goto __pyx_L39_unpacking_failed;
          __Pyx_GOTREF(__pyx_t_6);
          if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_7), 2) < 0) __PYX_ERR(1, 1070, __pyx_L1_error)
          __pyx_t_11 = NULL;
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          goto __pyx_L40_unpacking_done;
          __pyx_L39_unpacking_failed:;
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_t_11 = NULL;
          if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
          __PYX_ERR(1, 1070, __pyx_L1_error)
          __pyx_L40_unpacking_done:;
        }
        __pyx_v_all_aligns = __pyx_t_9;
        __pyx_t_9 = 0;
        __pyx_v_index = __pyx_t_6;
        __pyx_t_6 = 0;

        /* "dysgu/graph.pyx":1071
 * 
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 *                 event = all_aligns[index]             # <<<<<<<<<<<<<<
 * 
 *                 if len(all_aligns) == 1:
 */
        __pyx_t_5 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_v_index); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1071, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        __pyx_v_event = __pyx_t_5;
        __pyx_t_5 = 0;

        /* "dysgu/graph.pyx":1073
 *                 event = all_aligns[index]
 * 
 *                 if len(all_aligns) == 1:             # <<<<<<<<<<<<<<
 *                     return  # shouldnt happen
 * 
 */
        __pyx_t_12 = PyObject_Length(__pyx_v_all_aligns); if (unlikely(__pyx_t_12 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1073, __pyx_L1_error)
        __pyx_t_4 = ((__pyx_t_12 == 1) != 0);
        if (__pyx_t_4) {

          /* "dysgu/graph.pyx":1074
 * 
 *                 if len(all_aligns) == 1:
 *                     return  # shouldnt happen             # <<<<<<<<<<<<<<
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next
 */
          goto __pyx_L0;

          /* "dysgu/graph.pyx":1073
 *                 event = all_aligns[index]
 * 
 *                 if len(all_aligns) == 1:             # <<<<<<<<<<<<<<
 *                     return  # shouldnt happen
 * 
 */
        }

        /* "dysgu/graph.pyx":1076
 *                     return  # shouldnt happen
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, _ = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 * 
 */
        __pyx_t_12 = PyObject_Length(__pyx_v_all_aligns); if (unlikely(__pyx_t_12 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1076, __pyx_L1_error)
        __pyx_t_5 = PyInt_FromSsize_t((__pyx_t_12 - 1)); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1076, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        __pyx_t_6 = PyObject_RichCompare(__pyx_v_index, __pyx_t_5, Py_LT); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1076, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1076, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        if (__pyx_t_4) {

          /* "dysgu/graph.pyx":1077
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next
 *                     event_pos, chrom, pos2, chrom2, _ = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)             # <<<<<<<<<<<<<<
 * 
 *                     cigar_index = 0
 */
          __pyx_t_6 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_v_index); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_6);
          __pyx_t_5 = __Pyx_PyInt_AddObjC(__pyx_v_index, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_9 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_t_5); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_9);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_paired_end); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_loci_dist); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_mapq_thresh); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_8);
          __pyx_t_1 = __pyx_f_5dysgu_5graph_connect_right(__pyx_t_6, __pyx_t_9, ((PyObject *)__pyx_v_r), __pyx_t_5, __pyx_t_7, __pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          if ((likely(PyTuple_CheckExact(__pyx_t_1))) || (PyList_CheckExact(__pyx_t_1))) {
            PyObject* sequence = __pyx_t_1;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 5)) {
              if (size > 5) __Pyx_RaiseTooManyValuesError(5);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 1077, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_8 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_7 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_5 = PyTuple_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyTuple_GET_ITEM(sequence, 3); 
              __pyx_t_6 = PyTuple_GET_ITEM(sequence, 4); 
            } else {
              __pyx_t_8 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_7 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_5 = PyList_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyList_GET_ITEM(sequence, 3); 
              __pyx_t_6 = PyList_GET_ITEM(sequence, 4); 
            }
            __Pyx_INCREF(__pyx_t_8);
            __Pyx_INCREF(__pyx_t_7);
            __Pyx_INCREF(__pyx_t_5);
            __Pyx_INCREF(__pyx_t_9);
            __Pyx_INCREF(__pyx_t_6);
            #else
            {
              Py_ssize_t i;
              PyObject** temps[5] = {&__pyx_t_8,&__pyx_t_7,&__pyx_t_5,&__pyx_t_9,&__pyx_t_6};
              for (i=0; i < 5; i++) {
                PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) __PYX_ERR(1, 1077, __pyx_L1_error)
                __Pyx_GOTREF(item);
                *(temps[i]) = item;
              }
            }
            #endif
            __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          } else {
            Py_ssize_t index = -1;
            PyObject** temps[5] = {&__pyx_t_8,&__pyx_t_7,&__pyx_t_5,&__pyx_t_9,&__pyx_t_6};
            __pyx_t_10 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1077, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_10);
            __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
            __pyx_t_11 = Py_TYPE(__pyx_t_10)->tp_iternext;
            for (index=0; index < 5; index++) {
              PyObject* item = __pyx_t_11(__pyx_t_10); if (unlikely(!item)) goto __pyx_L43_unpacking_failed;
              __Pyx_GOTREF(item);
              *(temps[index]) = item;
            }
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_10), 5) < 0) __PYX_ERR(1, 1077, __pyx_L1_error)
            __pyx_t_11 = NULL;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            goto __pyx_L44_unpacking_done;
            __pyx_L43_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            __pyx_t_11 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 1077, __pyx_L1_error)
            __pyx_L44_unpacking_done:;
          }
          __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_7); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_t_14 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_14 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_15 = __Pyx_PyInt_As_int(__pyx_t_9); if (unlikely((__pyx_t_15 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1077, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __pyx_v_event_pos = __pyx_t_2;
          __pyx_v_chrom = __pyx_t_13;
          __pyx_v_pos2 = __pyx_t_14;
          __pyx_v_chrom2 = __pyx_t_15;
          __pyx_v__ = __pyx_t_6;
          __pyx_t_6 = 0;

          /* "dysgu/graph.pyx":1079
 *                     event_pos, chrom, pos2, chrom2, _ = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 * 
 *                     cigar_index = 0             # <<<<<<<<<<<<<<
 *                     add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 *                                            tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,
 */
          __pyx_v_cigar_index = 0;

          /* "dysgu/graph.pyx":1081
 *                     cigar_index = 0
 *                     add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 *                                            tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,             # <<<<<<<<<<<<<<
 *                                            current_overlaps_roi, next_overlaps_roi,
 *                                            mm_only, clip_l, site_adder, 0, trust_ins_len)
 */
          __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v_tell); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1081, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);

          /* "dysgu/graph.pyx":1080
 * 
 *                     cigar_index = 0
 *                     add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,             # <<<<<<<<<<<<<<
 *                                            tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,
 *                                            current_overlaps_roi, next_overlaps_roi,
 */
          __pyx_f_5dysgu_5graph_add_to_graph(__pyx_v_G, __pyx_v_r, __pyx_v_pe_scope, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_genome_scanner, __pyx_v_flag, __pyx_v_chrom, __pyx_t_1, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_chrom2, __pyx_v_pos2, __pyx_v_clip_scope, __pyx_v_read_enum, __pyx_v_current_overlaps_roi, __pyx_v_next_overlaps_roi, __pyx_v_mm_only, __pyx_v_clip_l, __pyx_v_site_adder, 0, __pyx_v_trust_ins_len);
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

          /* "dysgu/graph.pyx":1076
 *                     return  # shouldnt happen
 * 
 *                 if index < len(all_aligns) - 1:  # connect to next             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, _ = connect_right(all_aligns[index], all_aligns[index + 1], r, paired_end, loci_dist, mapq_thresh)
 * 
 */
        }

        /* "dysgu/graph.pyx":1085
 *                                            mm_only, clip_l, site_adder, 0, trust_ins_len)
 * 
 *                 if index > 0:             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, _ = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1
 */
        __pyx_t_1 = PyObject_RichCompare(__pyx_v_index, __pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1085, __pyx_L1_error)
        __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1085, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
        if (__pyx_t_4) {

          /* "dysgu/graph.pyx":1086
 * 
 *                 if index > 0:
 *                     event_pos, chrom, pos2, chrom2, _ = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)             # <<<<<<<<<<<<<<
 *                     cigar_index = len(r.cigartuples) - 1
 *                     add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 */
          __pyx_t_1 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_v_index); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __pyx_t_6 = __Pyx_PyInt_SubtractObjC(__pyx_v_index, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_6);
          __pyx_t_9 = __Pyx_PyObject_GetItem(__pyx_v_all_aligns, __pyx_t_6); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_9);
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
          __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_paired_end); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_6);
          __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_loci_dist); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_mapq_thresh); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_7);
          __pyx_t_8 = __pyx_f_5dysgu_5graph_connect_left(__pyx_t_1, __pyx_t_9, ((PyObject *)__pyx_v_r), __pyx_t_6, __pyx_t_5, __pyx_t_7); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_8);
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          if ((likely(PyTuple_CheckExact(__pyx_t_8))) || (PyList_CheckExact(__pyx_t_8))) {
            PyObject* sequence = __pyx_t_8;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 5)) {
              if (size > 5) __Pyx_RaiseTooManyValuesError(5);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 1086, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_7 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_5 = PyTuple_GET_ITEM(sequence, 1); 
              __pyx_t_6 = PyTuple_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyTuple_GET_ITEM(sequence, 3); 
              __pyx_t_1 = PyTuple_GET_ITEM(sequence, 4); 
            } else {
              __pyx_t_7 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_5 = PyList_GET_ITEM(sequence, 1); 
              __pyx_t_6 = PyList_GET_ITEM(sequence, 2); 
              __pyx_t_9 = PyList_GET_ITEM(sequence, 3); 
              __pyx_t_1 = PyList_GET_ITEM(sequence, 4); 
            }
            __Pyx_INCREF(__pyx_t_7);
            __Pyx_INCREF(__pyx_t_5);
            __Pyx_INCREF(__pyx_t_6);
            __Pyx_INCREF(__pyx_t_9);
            __Pyx_INCREF(__pyx_t_1);
            #else
            {
              Py_ssize_t i;
              PyObject** temps[5] = {&__pyx_t_7,&__pyx_t_5,&__pyx_t_6,&__pyx_t_9,&__pyx_t_1};
              for (i=0; i < 5; i++) {
                PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) __PYX_ERR(1, 1086, __pyx_L1_error)
                __Pyx_GOTREF(item);
                *(temps[i]) = item;
              }
            }
            #endif
            __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          } else {
            Py_ssize_t index = -1;
            PyObject** temps[5] = {&__pyx_t_7,&__pyx_t_5,&__pyx_t_6,&__pyx_t_9,&__pyx_t_1};
            __pyx_t_10 = PyObject_GetIter(__pyx_t_8); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1086, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_10);
            __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
            __pyx_t_11 = Py_TYPE(__pyx_t_10)->tp_iternext;
            for (index=0; index < 5; index++) {
              PyObject* item = __pyx_t_11(__pyx_t_10); if (unlikely(!item)) goto __pyx_L46_unpacking_failed;
              __Pyx_GOTREF(item);
              *(temps[index]) = item;
            }
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_11(__pyx_t_10), 5) < 0) __PYX_ERR(1, 1086, __pyx_L1_error)
            __pyx_t_11 = NULL;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            goto __pyx_L47_unpacking_done;
            __pyx_L46_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
            __pyx_t_11 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 1086, __pyx_L1_error)
            __pyx_L47_unpacking_done:;
          }
          __pyx_t_15 = __Pyx_PyInt_As_int(__pyx_t_7); if (unlikely((__pyx_t_15 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
          __pyx_t_14 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_14 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_13 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
          __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_9); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1086, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
          __pyx_v_event_pos = __pyx_t_15;
          __pyx_v_chrom = __pyx_t_14;
          __pyx_v_pos2 = __pyx_t_13;
          __pyx_v_chrom2 = __pyx_t_2;
          __Pyx_XDECREF_SET(__pyx_v__, __pyx_t_1);
          __pyx_t_1 = 0;

          /* "dysgu/graph.pyx":1087
 *                 if index > 0:
 *                     event_pos, chrom, pos2, chrom2, _ = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1             # <<<<<<<<<<<<<<
 *                     add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 *                                            tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,
 */
          __pyx_t_8 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1087, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_8);
          __pyx_t_12 = PyObject_Length(__pyx_t_8); if (unlikely(__pyx_t_12 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1087, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
          __pyx_v_cigar_index = (__pyx_t_12 - 1);

          /* "dysgu/graph.pyx":1089
 *                     cigar_index = len(r.cigartuples) - 1
 *                     add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 *                                            tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,             # <<<<<<<<<<<<<<
 *                                            current_overlaps_roi, next_overlaps_roi,
 *                                            mm_only, clip_l, site_adder, length_from_cigar, trust_ins_len)
 */
          __pyx_t_8 = __Pyx_PyInt_From_long(__pyx_v_tell); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1089, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_8);

          /* "dysgu/graph.pyx":1088
 *                     event_pos, chrom, pos2, chrom2, _ = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1
 *                     add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,             # <<<<<<<<<<<<<<
 *                                            tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,
 *                                            current_overlaps_roi, next_overlaps_roi,
 */
          __pyx_f_5dysgu_5graph_add_to_graph(__pyx_v_G, __pyx_v_r, __pyx_v_pe_scope, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_genome_scanner, __pyx_v_flag, __pyx_v_chrom, __pyx_t_8, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_chrom2, __pyx_v_pos2, __pyx_v_clip_scope, __pyx_v_read_enum, __pyx_v_current_overlaps_roi, __pyx_v_next_overlaps_roi, __pyx_v_mm_only, __pyx_v_clip_l, __pyx_v_site_adder, __pyx_v_length_from_cigar, __pyx_v_trust_ins_len);
          __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;

          /* "dysgu/graph.pyx":1085
 *                                            mm_only, clip_l, site_adder, 0, trust_ins_len)
 * 
 *                 if index > 0:             # <<<<<<<<<<<<<<
 *                     event_pos, chrom, pos2, chrom2, _ = connect_left(all_aligns[index], all_aligns[index -1], r, paired_end, loci_dist, mapq_thresh)
 *                     cigar_index = len(r.cigartuples) - 1
 */
        }

        /* "dysgu/graph.pyx":1068
 *         if read_enum == SPLIT:
 *             # Use SA tag to get chrom2 and pos2
 *             if r.has_tag("SA"):             # <<<<<<<<<<<<<<
 * 
 *                 all_aligns, index = alignments_from_sa_tag(r, gettid, loci_dist, paired_end, mapq_thresh)
 */
      }

      /* "dysgu/graph.pyx":1066
 *     else:  # Single end
 *         current_overlaps_roi, next_overlaps_roi = False, False  # not supported yet
 *         if read_enum == SPLIT:             # <<<<<<<<<<<<<<
 *             # Use SA tag to get chrom2 and pos2
 *             if r.has_tag("SA"):
 */
      goto __pyx_L37;
    }

    /* "dysgu/graph.pyx":1093
 *                                            mm_only, clip_l, site_adder, length_from_cigar, trust_ins_len)
 * 
 *         elif read_enum >= 2:  # Sv within read             # <<<<<<<<<<<<<<
 *             chrom2 = r.rname
 *             if r.cigartuples[cigar_index][0] != 1:  # If not insertion
 */
    __pyx_t_4 = ((__pyx_v_read_enum >= 2) != 0);
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":1094
 * 
 *         elif read_enum >= 2:  # Sv within read
 *             chrom2 = r.rname             # <<<<<<<<<<<<<<
 *             if r.cigartuples[cigar_index][0] != 1:  # If not insertion
 *                 pos2 = cigar_pos2
 */
      __pyx_t_8 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_rname); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1094, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_8); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1094, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __pyx_v_chrom2 = __pyx_t_2;

      /* "dysgu/graph.pyx":1095
 *         elif read_enum >= 2:  # Sv within read
 *             chrom2 = r.rname
 *             if r.cigartuples[cigar_index][0] != 1:  # If not insertion             # <<<<<<<<<<<<<<
 *                 pos2 = cigar_pos2
 *             else:
 */
      __pyx_t_8 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_r), __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1095, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_8, __pyx_v_cigar_index, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1095, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __pyx_t_8 = __Pyx_GetItemInt(__pyx_t_1, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1095, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      __pyx_t_1 = __Pyx_PyInt_NeObjC(__pyx_t_8, __pyx_int_1, 1, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1095, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1095, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
      if (__pyx_t_4) {

        /* "dysgu/graph.pyx":1096
 *             chrom2 = r.rname
 *             if r.cigartuples[cigar_index][0] != 1:  # If not insertion
 *                 pos2 = cigar_pos2             # <<<<<<<<<<<<<<
 *             else:
 *                 pos2 = event_pos
 */
        __pyx_v_pos2 = __pyx_v_cigar_pos2;

        /* "dysgu/graph.pyx":1095
 *         elif read_enum >= 2:  # Sv within read
 *             chrom2 = r.rname
 *             if r.cigartuples[cigar_index][0] != 1:  # If not insertion             # <<<<<<<<<<<<<<
 *                 pos2 = cigar_pos2
 *             else:
 */
        goto __pyx_L48;
      }

      /* "dysgu/graph.pyx":1098
 *                 pos2 = cigar_pos2
 *             else:
 *                 pos2 = event_pos             # <<<<<<<<<<<<<<
 *             add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 *                                    tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,
 */
      /*else*/ {
        __pyx_v_pos2 = __pyx_v_event_pos;
      }
      __pyx_L48:;

      /* "dysgu/graph.pyx":1100
 *                 pos2 = event_pos
 *             add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,
 *                                    tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,             # <<<<<<<<<<<<<<
 *                                    current_overlaps_roi, next_overlaps_roi, mm_only, clip_l, site_adder, length_from_cigar, trust_ins_len)
 * 
 */
      __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v_tell); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1100, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);

      /* "dysgu/graph.pyx":1099
 *             else:
 *                 pos2 = event_pos
 *             add_to_graph(G, r, pe_scope, template_edges, node_to_name, genome_scanner, flag, chrom,             # <<<<<<<<<<<<<<
 *                                    tell, cigar_index, event_pos, chrom2, pos2, clip_scope, read_enum,
 *                                    current_overlaps_roi, next_overlaps_roi, mm_only, clip_l, site_adder, length_from_cigar, trust_ins_len)
 */
      __pyx_f_5dysgu_5graph_add_to_graph(__pyx_v_G, __pyx_v_r, __pyx_v_pe_scope, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_genome_scanner, __pyx_v_flag, __pyx_v_chrom, __pyx_t_1, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_chrom2, __pyx_v_pos2, __pyx_v_clip_scope, __pyx_v_read_enum, __pyx_v_current_overlaps_roi, __pyx_v_next_overlaps_roi, __pyx_v_mm_only, __pyx_v_clip_l, __pyx_v_site_adder, __pyx_v_length_from_cigar, __pyx_v_trust_ins_len);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

      /* "dysgu/graph.pyx":1093
 *                                            mm_only, clip_l, site_adder, length_from_cigar, trust_ins_len)
 * 
 *         elif read_enum >= 2:  # Sv within read             # <<<<<<<<<<<<<<
 *             chrom2 = r.rname
 *             if r.cigartuples[cigar_index][0] != 1:  # If not insertion
 */
    }
    __pyx_L37:;
  }
  __pyx_L9:;

  /* "dysgu/graph.pyx":962
 * 
 * 
 * cdef void process_alignment(G, AlignedSegment r, int clip_l, int loci_dist, gettid,             # <<<<<<<<<<<<<<
 *                             overlap_regions, int clustering_dist, PairedEndScoper_t pe_scope,
 *                             int cigar_index, int event_pos, int paired_end, long tell, genome_scanner,
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_WriteUnraisable("dysgu.graph.process_alignment", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_qname);
  __Pyx_XDECREF(__pyx_v_pnext);
  __Pyx_XDECREF(__pyx_v_rnext);
  __Pyx_XDECREF(__pyx_v_all_aligns);
  __Pyx_XDECREF(__pyx_v_index);
  __Pyx_XDECREF(__pyx_v_event);
  __Pyx_XDECREF(__pyx_v__);
  __Pyx_RefNannyFinishContext();
}

/* "dysgu/graph.pyx":1114
 * 
 * 
 * cdef CigarEvent make_cigar_event(int opp, int cigar_index, int event_pos, int pos2, int length,             # <<<<<<<<<<<<<<
 *                                  ReadEnum_t read_enum) nogil:
 *     cdef CigarEvent item
 */

static struct __pyx_t_5dysgu_5graph_CigarEvent __pyx_f_5dysgu_5graph_make_cigar_event(int __pyx_v_opp, int __pyx_v_cigar_index, int __pyx_v_event_pos, int __pyx_v_pos2, int __pyx_v_length, __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum) {
  struct __pyx_t_5dysgu_5graph_CigarEvent __pyx_v_item;
  struct __pyx_t_5dysgu_5graph_CigarEvent __pyx_r;

  /* "dysgu/graph.pyx":1117
 *                                  ReadEnum_t read_enum) nogil:
 *     cdef CigarEvent item
 *     item.opp = opp             # <<<<<<<<<<<<<<
 *     item.cigar_index = cigar_index
 *     item.event_pos = event_pos
 */
  __pyx_v_item.opp = __pyx_v_opp;

  /* "dysgu/graph.pyx":1118
 *     cdef CigarEvent item
 *     item.opp = opp
 *     item.cigar_index = cigar_index             # <<<<<<<<<<<<<<
 *     item.event_pos = event_pos
 *     item.read_enum = read_enum
 */
  __pyx_v_item.cigar_index = __pyx_v_cigar_index;

  /* "dysgu/graph.pyx":1119
 *     item.opp = opp
 *     item.cigar_index = cigar_index
 *     item.event_pos = event_pos             # <<<<<<<<<<<<<<
 *     item.read_enum = read_enum
 *     item.pos2 = pos2
 */
  __pyx_v_item.event_pos = __pyx_v_event_pos;

  /* "dysgu/graph.pyx":1120
 *     item.cigar_index = cigar_index
 *     item.event_pos = event_pos
 *     item.read_enum = read_enum             # <<<<<<<<<<<<<<
 *     item.pos2 = pos2
 *     item.length = length
 */
  __pyx_v_item.read_enum = __pyx_v_read_enum;

  /* "dysgu/graph.pyx":1121
 *     item.event_pos = event_pos
 *     item.read_enum = read_enum
 *     item.pos2 = pos2             # <<<<<<<<<<<<<<
 *     item.length = length
 *     item.cigar_skip = 0
 */
  __pyx_v_item.pos2 = __pyx_v_pos2;

  /* "dysgu/graph.pyx":1122
 *     item.read_enum = read_enum
 *     item.pos2 = pos2
 *     item.length = length             # <<<<<<<<<<<<<<
 *     item.cigar_skip = 0
 *     return item
 */
  __pyx_v_item.length = __pyx_v_length;

  /* "dysgu/graph.pyx":1123
 *     item.pos2 = pos2
 *     item.length = length
 *     item.cigar_skip = 0             # <<<<<<<<<<<<<<
 *     return item
 * 
 */
  __pyx_v_item.cigar_skip = 0;

  /* "dysgu/graph.pyx":1124
 *     item.length = length
 *     item.cigar_skip = 0
 *     return item             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_item;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1114
 * 
 * 
 * cdef CigarEvent make_cigar_event(int opp, int cigar_index, int event_pos, int pos2, int length,             # <<<<<<<<<<<<<<
 *                                  ReadEnum_t read_enum) nogil:
 *     cdef CigarEvent item
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "dysgu/graph.pyx":1128
 * 
 * class SiteAdder:
 *     def __init__(self, sites):             # <<<<<<<<<<<<<<
 *         self.sites = {k: list(v) for k, v in sites.items()}
 *         self.sites_queue = sites  # dict of deque's
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_1__init__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_1__init__ = {"__init__", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_9SiteAdder_1__init__, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_1__init__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_self = 0;
  PyObject *__pyx_v_sites = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_sites,0};
    PyObject* values[2] = {0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_sites)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, 1); __PYX_ERR(1, 1128, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(1, 1128, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 2) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
    }
    __pyx_v_self = values[0];
    __pyx_v_sites = values[1];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1128, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_9SiteAdder___init__(__pyx_self, __pyx_v_self, __pyx_v_sites);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1136
 *         self.current_index = 0
 *         self.count = 0
 *         self.scope = sortedcontainers.sortedlist.SortedList(key=lambda x: x.start)             # <<<<<<<<<<<<<<
 *         self.current_chrom = -1
 *         self.scope_front = 0
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_8__init___lambda1(PyObject *__pyx_self, PyObject *__pyx_v_x); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_8__init___lambda1 = {"lambda1", (PyCFunction)__pyx_pw_5dysgu_5graph_9SiteAdder_8__init___lambda1, METH_O, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_8__init___lambda1(PyObject *__pyx_self, PyObject *__pyx_v_x) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("lambda1 (wrapper)", 0);
  __pyx_r = __pyx_lambda_funcdef_lambda1(__pyx_self, ((PyObject *)__pyx_v_x));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_lambda_funcdef_lambda1(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("lambda1", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_x, __pyx_n_s_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.__init__.lambda1", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1128
 * 
 * class SiteAdder:
 *     def __init__(self, sites):             # <<<<<<<<<<<<<<
 *         self.sites = {k: list(v) for k, v in sites.items()}
 *         self.sites_queue = sites  # dict of deque's
 */

static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_sites) {
  PyObject *__pyx_8genexpr1__pyx_v_k = NULL;
  PyObject *__pyx_8genexpr1__pyx_v_v = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  Py_ssize_t __pyx_t_3;
  Py_ssize_t __pyx_t_4;
  int __pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  int __pyx_t_8;
  PyObject *__pyx_t_9 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__init__", 0);

  /* "dysgu/graph.pyx":1129
 * class SiteAdder:
 *     def __init__(self, sites):
 *         self.sites = {k: list(v) for k, v in sites.items()}             # <<<<<<<<<<<<<<
 *         self.sites_queue = sites  # dict of deque's
 *         self.sites_scope = sites
 */
  { /* enter inner scope */
    __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1129, __pyx_L5_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = 0;
    if (unlikely(__pyx_v_sites == Py_None)) {
      PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%.30s'", "items");
      __PYX_ERR(1, 1129, __pyx_L5_error)
    }
    __pyx_t_6 = __Pyx_dict_iterator(__pyx_v_sites, 0, __pyx_n_s_items, (&__pyx_t_4), (&__pyx_t_5)); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1129, __pyx_L5_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_XDECREF(__pyx_t_2);
    __pyx_t_2 = __pyx_t_6;
    __pyx_t_6 = 0;
    while (1) {
      __pyx_t_8 = __Pyx_dict_iter_next(__pyx_t_2, __pyx_t_4, &__pyx_t_3, &__pyx_t_6, &__pyx_t_7, NULL, __pyx_t_5);
      if (unlikely(__pyx_t_8 == 0)) break;
      if (unlikely(__pyx_t_8 == -1)) __PYX_ERR(1, 1129, __pyx_L5_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_GOTREF(__pyx_t_7);
      __Pyx_XDECREF_SET(__pyx_8genexpr1__pyx_v_k, __pyx_t_6);
      __pyx_t_6 = 0;
      __Pyx_XDECREF_SET(__pyx_8genexpr1__pyx_v_v, __pyx_t_7);
      __pyx_t_7 = 0;
      __pyx_t_7 = PySequence_List(__pyx_8genexpr1__pyx_v_v); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1129, __pyx_L5_error)
      __Pyx_GOTREF(__pyx_t_7);
      if (unlikely(PyDict_SetItem(__pyx_t_1, (PyObject*)__pyx_8genexpr1__pyx_v_k, (PyObject*)__pyx_t_7))) __PYX_ERR(1, 1129, __pyx_L5_error)
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    }
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_XDECREF(__pyx_8genexpr1__pyx_v_k); __pyx_8genexpr1__pyx_v_k = 0;
    __Pyx_XDECREF(__pyx_8genexpr1__pyx_v_v); __pyx_8genexpr1__pyx_v_v = 0;
    goto __pyx_L8_exit_scope;
    __pyx_L5_error:;
    __Pyx_XDECREF(__pyx_8genexpr1__pyx_v_k); __pyx_8genexpr1__pyx_v_k = 0;
    __Pyx_XDECREF(__pyx_8genexpr1__pyx_v_v); __pyx_8genexpr1__pyx_v_v = 0;
    goto __pyx_L1_error;
    __pyx_L8_exit_scope:;
  } /* exit inner scope */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_sites, __pyx_t_1) < 0) __PYX_ERR(1, 1129, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1130
 *     def __init__(self, sites):
 *         self.sites = {k: list(v) for k, v in sites.items()}
 *         self.sites_queue = sites  # dict of deque's             # <<<<<<<<<<<<<<
 *         self.sites_scope = sites
 *         self.sites_index = {}
 */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_sites_queue, __pyx_v_sites) < 0) __PYX_ERR(1, 1130, __pyx_L1_error)

  /* "dysgu/graph.pyx":1131
 *         self.sites = {k: list(v) for k, v in sites.items()}
 *         self.sites_queue = sites  # dict of deque's
 *         self.sites_scope = sites             # <<<<<<<<<<<<<<
 *         self.sites_index = {}
 *         self.sites_index_r = {}
 */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_sites_scope, __pyx_v_sites) < 0) __PYX_ERR(1, 1131, __pyx_L1_error)

  /* "dysgu/graph.pyx":1132
 *         self.sites_queue = sites  # dict of deque's
 *         self.sites_scope = sites
 *         self.sites_index = {}             # <<<<<<<<<<<<<<
 *         self.sites_index_r = {}
 *         self.current_index = 0
 */
  __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1132, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_sites_index, __pyx_t_1) < 0) __PYX_ERR(1, 1132, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1133
 *         self.sites_scope = sites
 *         self.sites_index = {}
 *         self.sites_index_r = {}             # <<<<<<<<<<<<<<
 *         self.current_index = 0
 *         self.count = 0
 */
  __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1133, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_sites_index_r, __pyx_t_1) < 0) __PYX_ERR(1, 1133, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1134
 *         self.sites_index = {}
 *         self.sites_index_r = {}
 *         self.current_index = 0             # <<<<<<<<<<<<<<
 *         self.count = 0
 *         self.scope = sortedcontainers.sortedlist.SortedList(key=lambda x: x.start)
 */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_current_index, __pyx_int_0) < 0) __PYX_ERR(1, 1134, __pyx_L1_error)

  /* "dysgu/graph.pyx":1135
 *         self.sites_index_r = {}
 *         self.current_index = 0
 *         self.count = 0             # <<<<<<<<<<<<<<
 *         self.scope = sortedcontainers.sortedlist.SortedList(key=lambda x: x.start)
 *         self.current_chrom = -1
 */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_count, __pyx_int_0) < 0) __PYX_ERR(1, 1135, __pyx_L1_error)

  /* "dysgu/graph.pyx":1136
 *         self.current_index = 0
 *         self.count = 0
 *         self.scope = sortedcontainers.sortedlist.SortedList(key=lambda x: x.start)             # <<<<<<<<<<<<<<
 *         self.current_chrom = -1
 *         self.scope_front = 0
 */
  __Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_sortedcontainers); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_sortedlist); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_SortedList); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_7 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_8__init___lambda1, 0, __pyx_n_s_SiteAdder___init___locals_lambda, NULL, __pyx_n_s_dysgu_graph, __pyx_d, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  if (PyDict_SetItem(__pyx_t_2, __pyx_n_s_key, __pyx_t_7) < 0) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_empty_tuple, __pyx_t_2); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_scope, __pyx_t_7) < 0) __PYX_ERR(1, 1136, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

  /* "dysgu/graph.pyx":1137
 *         self.count = 0
 *         self.scope = sortedcontainers.sortedlist.SortedList(key=lambda x: x.start)
 *         self.current_chrom = -1             # <<<<<<<<<<<<<<
 *         self.scope_front = 0
 *         self.scope_back = 0
 */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_current_chrom, __pyx_int_neg_1) < 0) __PYX_ERR(1, 1137, __pyx_L1_error)

  /* "dysgu/graph.pyx":1138
 *         self.scope = sortedcontainers.sortedlist.SortedList(key=lambda x: x.start)
 *         self.current_chrom = -1
 *         self.scope_front = 0             # <<<<<<<<<<<<<<
 *         self.scope_back = 0
 *         self.lookup = namedtuple("l", ["start"])
 */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_scope_front, __pyx_int_0) < 0) __PYX_ERR(1, 1138, __pyx_L1_error)

  /* "dysgu/graph.pyx":1139
 *         self.current_chrom = -1
 *         self.scope_front = 0
 *         self.scope_back = 0             # <<<<<<<<<<<<<<
 *         self.lookup = namedtuple("l", ["start"])
 * 
 */
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_scope_back, __pyx_int_0) < 0) __PYX_ERR(1, 1139, __pyx_L1_error)

  /* "dysgu/graph.pyx":1140
 *         self.scope_front = 0
 *         self.scope_back = 0
 *         self.lookup = namedtuple("l", ["start"])             # <<<<<<<<<<<<<<
 * 
 *     def __contains__(self, item):
 */
  __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_namedtuple); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1140, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1140, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_n_u_start);
  __Pyx_GIVEREF(__pyx_n_u_start);
  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_u_start);
  __pyx_t_6 = NULL;
  __pyx_t_5 = 0;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_6)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
      __pyx_t_5 = 1;
    }
  }
  #if CYTHON_FAST_PYCALL
  if (PyFunction_Check(__pyx_t_2)) {
    PyObject *__pyx_temp[3] = {__pyx_t_6, __pyx_n_u_l, __pyx_t_1};
    __pyx_t_7 = __Pyx_PyFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_5, 2+__pyx_t_5); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1140, __pyx_L1_error)
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  } else
  #endif
  #if CYTHON_FAST_PYCCALL
  if (__Pyx_PyFastCFunction_Check(__pyx_t_2)) {
    PyObject *__pyx_temp[3] = {__pyx_t_6, __pyx_n_u_l, __pyx_t_1};
    __pyx_t_7 = __Pyx_PyCFunction_FastCall(__pyx_t_2, __pyx_temp+1-__pyx_t_5, 2+__pyx_t_5); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1140, __pyx_L1_error)
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  } else
  #endif
  {
    __pyx_t_9 = PyTuple_New(2+__pyx_t_5); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1140, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_9);
    if (__pyx_t_6) {
      __Pyx_GIVEREF(__pyx_t_6); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_6); __pyx_t_6 = NULL;
    }
    __Pyx_INCREF(__pyx_n_u_l);
    __Pyx_GIVEREF(__pyx_n_u_l);
    PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_5, __pyx_n_u_l);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_5, __pyx_t_1);
    __pyx_t_1 = 0;
    __pyx_t_7 = __Pyx_PyObject_Call(__pyx_t_2, __pyx_t_9, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1140, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
  }
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_lookup, __pyx_t_7) < 0) __PYX_ERR(1, 1140, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

  /* "dysgu/graph.pyx":1128
 * 
 * class SiteAdder:
 *     def __init__(self, sites):             # <<<<<<<<<<<<<<
 *         self.sites = {k: list(v) for k, v in sites.items()}
 *         self.sites_queue = sites  # dict of deque's
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_8genexpr1__pyx_v_k);
  __Pyx_XDECREF(__pyx_8genexpr1__pyx_v_v);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1142
 *         self.lookup = namedtuple("l", ["start"])
 * 
 *     def __contains__(self, item):             # <<<<<<<<<<<<<<
 *         if item in self.sites_index:
 *             return True
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_3__contains__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_3__contains__ = {"__contains__", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_9SiteAdder_3__contains__, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_3__contains__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_self = 0;
  PyObject *__pyx_v_item = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__contains__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_item,0};
    PyObject* values[2] = {0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_item)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__contains__", 1, 2, 2, 1); __PYX_ERR(1, 1142, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__contains__") < 0)) __PYX_ERR(1, 1142, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 2) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
    }
    __pyx_v_self = values[0];
    __pyx_v_item = values[1];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__contains__", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1142, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.__contains__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_9SiteAdder_2__contains__(__pyx_self, __pyx_v_self, __pyx_v_item);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_2__contains__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_item) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__contains__", 0);

  /* "dysgu/graph.pyx":1143
 * 
 *     def __contains__(self, item):
 *         if item in self.sites_index:             # <<<<<<<<<<<<<<
 *             return True
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_index); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1143, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = (__Pyx_PySequence_ContainsTF(__pyx_v_item, __pyx_t_1, Py_EQ)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 1143, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1144
 *     def __contains__(self, item):
 *         if item in self.sites_index:
 *             return True             # <<<<<<<<<<<<<<
 * 
 *     def __getitem__(self, item):
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(Py_True);
    __pyx_r = Py_True;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1143
 * 
 *     def __contains__(self, item):
 *         if item in self.sites_index:             # <<<<<<<<<<<<<<
 *             return True
 * 
 */
  }

  /* "dysgu/graph.pyx":1142
 *         self.lookup = namedtuple("l", ["start"])
 * 
 *     def __contains__(self, item):             # <<<<<<<<<<<<<<
 *         if item in self.sites_index:
 *             return True
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.__contains__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1146
 *             return True
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.sites_index[item]
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_5__getitem__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_5__getitem__ = {"__getitem__", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_9SiteAdder_5__getitem__, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_5__getitem__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_self = 0;
  PyObject *__pyx_v_item = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getitem__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_item,0};
    PyObject* values[2] = {0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_item)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__getitem__", 1, 2, 2, 1); __PYX_ERR(1, 1146, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__getitem__") < 0)) __PYX_ERR(1, 1146, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 2) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
    }
    __pyx_v_self = values[0];
    __pyx_v_item = values[1];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__getitem__", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1146, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.__getitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_9SiteAdder_4__getitem__(__pyx_self, __pyx_v_self, __pyx_v_item);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_4__getitem__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_item) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getitem__", 0);

  /* "dysgu/graph.pyx":1147
 * 
 *     def __getitem__(self, item):
 *         return self.sites_index[item]             # <<<<<<<<<<<<<<
 * 
 *     def find_nearest_site(self, chrom, pos):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_index); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1147, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetItem(__pyx_t_1, __pyx_v_item); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1147, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1146
 *             return True
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.sites_index[item]
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.__getitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1149
 *         return self.sites_index[item]
 * 
 *     def find_nearest_site(self, chrom, pos):             # <<<<<<<<<<<<<<
 *         # return -1
 *         # search backwards from current_index for closest --site to pos
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_7find_nearest_site(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_7find_nearest_site = {"find_nearest_site", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_9SiteAdder_7find_nearest_site, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_7find_nearest_site(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_self = 0;
  CYTHON_UNUSED PyObject *__pyx_v_chrom = 0;
  PyObject *__pyx_v_pos = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("find_nearest_site (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_chrom,&__pyx_n_s_pos,0};
    PyObject* values[3] = {0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_chrom)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("find_nearest_site", 1, 3, 3, 1); __PYX_ERR(1, 1149, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pos)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("find_nearest_site", 1, 3, 3, 2); __PYX_ERR(1, 1149, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "find_nearest_site") < 0)) __PYX_ERR(1, 1149, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
    }
    __pyx_v_self = values[0];
    __pyx_v_chrom = values[1];
    __pyx_v_pos = values[2];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("find_nearest_site", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1149, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.find_nearest_site", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_9SiteAdder_6find_nearest_site(__pyx_self, __pyx_v_self, __pyx_v_chrom, __pyx_v_pos);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_6find_nearest_site(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_chrom, PyObject *__pyx_v_pos) {
  long __pyx_v_cluster_dist;
  long __pyx_v_scope_dist;
  PyObject *__pyx_v_left_index = NULL;
  CYTHON_UNUSED PyObject *__pyx_v_i = NULL;
  PyObject *__pyx_v_p = NULL;
  PyObject *__pyx_v_left_p = NULL;
  PyObject *__pyx_v_right_p = NULL;
  PyObject *__pyx_v_left_dis = NULL;
  PyObject *__pyx_v_right_dis = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  Py_ssize_t __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *(*__pyx_t_9)(PyObject *);
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("find_nearest_site", 0);

  /* "dysgu/graph.pyx":1152
 *         # return -1
 *         # search backwards from current_index for closest --site to pos
 *         cluster_dist = 50             # <<<<<<<<<<<<<<
 *         scope_dist = 500
 * 
 */
  __pyx_v_cluster_dist = 50;

  /* "dysgu/graph.pyx":1153
 *         # search backwards from current_index for closest --site to pos
 *         cluster_dist = 50
 *         scope_dist = 500             # <<<<<<<<<<<<<<
 * 
 *         if len(self.scope) == 0:
 */
  __pyx_v_scope_dist = 0x1F4;

  /* "dysgu/graph.pyx":1155
 *         scope_dist = 500
 * 
 *         if len(self.scope) == 0:             # <<<<<<<<<<<<<<
 *             return -1
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1155, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyObject_Length(__pyx_t_1); if (unlikely(__pyx_t_2 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1155, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_3 = ((__pyx_t_2 == 0) != 0);
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1156
 * 
 *         if len(self.scope) == 0:
 *             return -1             # <<<<<<<<<<<<<<
 * 
 *         # drop out of scope sites
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(__pyx_int_neg_1);
    __pyx_r = __pyx_int_neg_1;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1155
 *         scope_dist = 500
 * 
 *         if len(self.scope) == 0:             # <<<<<<<<<<<<<<
 *             return -1
 * 
 */
  }

  /* "dysgu/graph.pyx":1159
 * 
 *         # drop out of scope sites
 *         left_index = self.scope.bisect_left(self.lookup(pos - scope_dist)) - 1             # <<<<<<<<<<<<<<
 *         if left_index > 0:
 *             for i in range(left_index):
 */
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_bisect_left); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_lookup); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = __Pyx_PyInt_From_long(__pyx_v_scope_dist); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_8 = PyNumber_Subtract(__pyx_v_pos, __pyx_t_7); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_8);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_t_7 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_6))) {
    __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_6);
    if (likely(__pyx_t_7)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
      __Pyx_INCREF(__pyx_t_7);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_6, function);
    }
  }
  __pyx_t_4 = (__pyx_t_7) ? __Pyx_PyObject_Call2Args(__pyx_t_6, __pyx_t_7, __pyx_t_8) : __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_t_8);
  __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
  if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
    __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_5);
    if (likely(__pyx_t_6)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_5, function);
    }
  }
  __pyx_t_1 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_6, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_t_4);
  __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = __Pyx_PyInt_SubtractObjC(__pyx_t_1, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1159, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_left_index = __pyx_t_5;
  __pyx_t_5 = 0;

  /* "dysgu/graph.pyx":1160
 *         # drop out of scope sites
 *         left_index = self.scope.bisect_left(self.lookup(pos - scope_dist)) - 1
 *         if left_index > 0:             # <<<<<<<<<<<<<<
 *             for i in range(left_index):
 *                 self.scope.pop(0)
 */
  __pyx_t_5 = PyObject_RichCompare(__pyx_v_left_index, __pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1160, __pyx_L1_error)
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1160, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1161
 *         left_index = self.scope.bisect_left(self.lookup(pos - scope_dist)) - 1
 *         if left_index > 0:
 *             for i in range(left_index):             # <<<<<<<<<<<<<<
 *                 self.scope.pop(0)
 * 
 */
    __pyx_t_5 = __Pyx_PyObject_CallOneArg(__pyx_builtin_range, __pyx_v_left_index); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1161, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    if (likely(PyList_CheckExact(__pyx_t_5)) || PyTuple_CheckExact(__pyx_t_5)) {
      __pyx_t_1 = __pyx_t_5; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0;
      __pyx_t_9 = NULL;
    } else {
      __pyx_t_2 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1161, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_1);
      __pyx_t_9 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1161, __pyx_L1_error)
    }
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    for (;;) {
      if (likely(!__pyx_t_9)) {
        if (likely(PyList_CheckExact(__pyx_t_1))) {
          if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1161, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1161, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        } else {
          if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1161, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1161, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        }
      } else {
        __pyx_t_5 = __pyx_t_9(__pyx_t_1);
        if (unlikely(!__pyx_t_5)) {
          PyObject* exc_type = PyErr_Occurred();
          if (exc_type) {
            if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
            else __PYX_ERR(1, 1161, __pyx_L1_error)
          }
          break;
        }
        __Pyx_GOTREF(__pyx_t_5);
      }
      __Pyx_XDECREF_SET(__pyx_v_i, __pyx_t_5);
      __pyx_t_5 = 0;

      /* "dysgu/graph.pyx":1162
 *         if left_index > 0:
 *             for i in range(left_index):
 *                 self.scope.pop(0)             # <<<<<<<<<<<<<<
 * 
 *         # find closest value in scope
 */
      __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1162, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_4 = __Pyx_PyObject_PopIndex(__pyx_t_5, __pyx_int_0, 0, 1, Py_ssize_t, PyInt_FromSsize_t); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1162, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

      /* "dysgu/graph.pyx":1161
 *         left_index = self.scope.bisect_left(self.lookup(pos - scope_dist)) - 1
 *         if left_index > 0:
 *             for i in range(left_index):             # <<<<<<<<<<<<<<
 *                 self.scope.pop(0)
 * 
 */
    }
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

    /* "dysgu/graph.pyx":1160
 *         # drop out of scope sites
 *         left_index = self.scope.bisect_left(self.lookup(pos - scope_dist)) - 1
 *         if left_index > 0:             # <<<<<<<<<<<<<<
 *             for i in range(left_index):
 *                 self.scope.pop(0)
 */
  }

  /* "dysgu/graph.pyx":1165
 * 
 *         # find closest value in scope
 *         left_index = self.scope.bisect_left(self.lookup(pos))             # <<<<<<<<<<<<<<
 * 
 *         if left_index == len(self.scope):
 */
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1165, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_4, __pyx_n_s_bisect_left); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1165, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_lookup); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1165, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_8 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_6))) {
    __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_6);
    if (likely(__pyx_t_8)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
      __Pyx_INCREF(__pyx_t_8);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_6, function);
    }
  }
  __pyx_t_4 = (__pyx_t_8) ? __Pyx_PyObject_Call2Args(__pyx_t_6, __pyx_t_8, __pyx_v_pos) : __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_v_pos);
  __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
  if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1165, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  __pyx_t_6 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
    __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_5);
    if (likely(__pyx_t_6)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_5, function);
    }
  }
  __pyx_t_1 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_6, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_t_4);
  __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1165, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __Pyx_DECREF_SET(__pyx_v_left_index, __pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1167
 *         left_index = self.scope.bisect_left(self.lookup(pos))
 * 
 *         if left_index == len(self.scope):             # <<<<<<<<<<<<<<
 *             p = self.scope[left_index - 1]
 *         elif left_index != len(self.scope) - 1:
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1167, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyObject_Length(__pyx_t_1); if (unlikely(__pyx_t_2 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1167, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyInt_FromSsize_t(__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1167, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = PyObject_RichCompare(__pyx_v_left_index, __pyx_t_1, Py_EQ); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1167, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1167, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1168
 * 
 *         if left_index == len(self.scope):
 *             p = self.scope[left_index - 1]             # <<<<<<<<<<<<<<
 *         elif left_index != len(self.scope) - 1:
 *             left_p = self.scope[left_index]
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1168, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = __Pyx_PyInt_SubtractObjC(__pyx_v_left_index, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1168, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_4 = __Pyx_PyObject_GetItem(__pyx_t_5, __pyx_t_1); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1168, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_p = __pyx_t_4;
    __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1167
 *         left_index = self.scope.bisect_left(self.lookup(pos))
 * 
 *         if left_index == len(self.scope):             # <<<<<<<<<<<<<<
 *             p = self.scope[left_index - 1]
 *         elif left_index != len(self.scope) - 1:
 */
    goto __pyx_L7;
  }

  /* "dysgu/graph.pyx":1169
 *         if left_index == len(self.scope):
 *             p = self.scope[left_index - 1]
 *         elif left_index != len(self.scope) - 1:             # <<<<<<<<<<<<<<
 *             left_p = self.scope[left_index]
 *             right_p = self.scope[left_index + 1]
 */
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1169, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_2 = PyObject_Length(__pyx_t_4); if (unlikely(__pyx_t_2 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1169, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_4 = PyInt_FromSsize_t((__pyx_t_2 - 1)); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1169, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_1 = PyObject_RichCompare(__pyx_v_left_index, __pyx_t_4, Py_NE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1169, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1169, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1170
 *             p = self.scope[left_index - 1]
 *         elif left_index != len(self.scope) - 1:
 *             left_p = self.scope[left_index]             # <<<<<<<<<<<<<<
 *             right_p = self.scope[left_index + 1]
 *             left_dis = abs(left_p.start - pos)
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1170, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_4 = __Pyx_PyObject_GetItem(__pyx_t_1, __pyx_v_left_index); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1170, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_left_p = __pyx_t_4;
    __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1171
 *         elif left_index != len(self.scope) - 1:
 *             left_p = self.scope[left_index]
 *             right_p = self.scope[left_index + 1]             # <<<<<<<<<<<<<<
 *             left_dis = abs(left_p.start - pos)
 *             right_dis = abs(right_p.start - pos)
 */
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1171, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_1 = __Pyx_PyInt_AddObjC(__pyx_v_left_index, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1171, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = __Pyx_PyObject_GetItem(__pyx_t_4, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1171, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_right_p = __pyx_t_5;
    __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1172
 *             left_p = self.scope[left_index]
 *             right_p = self.scope[left_index + 1]
 *             left_dis = abs(left_p.start - pos)             # <<<<<<<<<<<<<<
 *             right_dis = abs(right_p.start - pos)
 *             if left_dis <= right_dis:
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_left_p, __pyx_n_s_start); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1172, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = PyNumber_Subtract(__pyx_t_5, __pyx_v_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1172, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyNumber_Absolute(__pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1172, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_left_dis = __pyx_t_5;
    __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1173
 *             right_p = self.scope[left_index + 1]
 *             left_dis = abs(left_p.start - pos)
 *             right_dis = abs(right_p.start - pos)             # <<<<<<<<<<<<<<
 *             if left_dis <= right_dis:
 *                 p = left_p
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_right_p, __pyx_n_s_start); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1173, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = PyNumber_Subtract(__pyx_t_5, __pyx_v_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1173, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyNumber_Absolute(__pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1173, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_v_right_dis = __pyx_t_5;
    __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1174
 *             left_dis = abs(left_p.start - pos)
 *             right_dis = abs(right_p.start - pos)
 *             if left_dis <= right_dis:             # <<<<<<<<<<<<<<
 *                 p = left_p
 *             else:
 */
    __pyx_t_5 = PyObject_RichCompare(__pyx_v_left_dis, __pyx_v_right_dis, Py_LE); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1174, __pyx_L1_error)
    __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1174, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":1175
 *             right_dis = abs(right_p.start - pos)
 *             if left_dis <= right_dis:
 *                 p = left_p             # <<<<<<<<<<<<<<
 *             else:
 *                 p = right_p
 */
      __Pyx_INCREF(__pyx_v_left_p);
      __pyx_v_p = __pyx_v_left_p;

      /* "dysgu/graph.pyx":1174
 *             left_dis = abs(left_p.start - pos)
 *             right_dis = abs(right_p.start - pos)
 *             if left_dis <= right_dis:             # <<<<<<<<<<<<<<
 *                 p = left_p
 *             else:
 */
      goto __pyx_L8;
    }

    /* "dysgu/graph.pyx":1177
 *                 p = left_p
 *             else:
 *                 p = right_p             # <<<<<<<<<<<<<<
 *         else:
 *             p = self.scope[left_index]
 */
    /*else*/ {
      __Pyx_INCREF(__pyx_v_right_p);
      __pyx_v_p = __pyx_v_right_p;
    }
    __pyx_L8:;

    /* "dysgu/graph.pyx":1169
 *         if left_index == len(self.scope):
 *             p = self.scope[left_index - 1]
 *         elif left_index != len(self.scope) - 1:             # <<<<<<<<<<<<<<
 *             left_p = self.scope[left_index]
 *             right_p = self.scope[left_index + 1]
 */
    goto __pyx_L7;
  }

  /* "dysgu/graph.pyx":1179
 *                 p = right_p
 *         else:
 *             p = self.scope[left_index]             # <<<<<<<<<<<<<<
 * 
 *         if abs(p.start - pos) <= cluster_dist:
 */
  /*else*/ {
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1179, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = __Pyx_PyObject_GetItem(__pyx_t_5, __pyx_v_left_index); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1179, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_v_p = __pyx_t_1;
    __pyx_t_1 = 0;
  }
  __pyx_L7:;

  /* "dysgu/graph.pyx":1181
 *             p = self.scope[left_index]
 * 
 *         if abs(p.start - pos) <= cluster_dist:             # <<<<<<<<<<<<<<
 *             return self.sites_index_r[p]
 *         else:
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_p, __pyx_n_s_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1181, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = PyNumber_Subtract(__pyx_t_1, __pyx_v_pos); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1181, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyNumber_Absolute(__pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1181, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = __Pyx_PyInt_From_long(__pyx_v_cluster_dist); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1181, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_4 = PyObject_RichCompare(__pyx_t_1, __pyx_t_5, Py_LE); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1181, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1181, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1182
 * 
 *         if abs(p.start - pos) <= cluster_dist:
 *             return self.sites_index_r[p]             # <<<<<<<<<<<<<<
 *         else:
 *             return -1
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_index_r); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1182, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = __Pyx_PyObject_GetItem(__pyx_t_4, __pyx_v_p); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1182, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_r = __pyx_t_5;
    __pyx_t_5 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1181
 *             p = self.scope[left_index]
 * 
 *         if abs(p.start - pos) <= cluster_dist:             # <<<<<<<<<<<<<<
 *             return self.sites_index_r[p]
 *         else:
 */
  }

  /* "dysgu/graph.pyx":1184
 *             return self.sites_index_r[p]
 *         else:
 *             return -1             # <<<<<<<<<<<<<<
 * 
 *     def add_to_scope(self, site):
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(__pyx_int_neg_1);
    __pyx_r = __pyx_int_neg_1;
    goto __pyx_L0;
  }

  /* "dysgu/graph.pyx":1149
 *         return self.sites_index[item]
 * 
 *     def find_nearest_site(self, chrom, pos):             # <<<<<<<<<<<<<<
 *         # return -1
 *         # search backwards from current_index for closest --site to pos
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.find_nearest_site", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_left_index);
  __Pyx_XDECREF(__pyx_v_i);
  __Pyx_XDECREF(__pyx_v_p);
  __Pyx_XDECREF(__pyx_v_left_p);
  __Pyx_XDECREF(__pyx_v_right_p);
  __Pyx_XDECREF(__pyx_v_left_dis);
  __Pyx_XDECREF(__pyx_v_right_dis);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1186
 *             return -1
 * 
 *     def add_to_scope(self, site):             # <<<<<<<<<<<<<<
 *         if site.chrom == self.current_chrom:
 *             self.scope.add(site)
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_9add_to_scope(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_9add_to_scope = {"add_to_scope", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_9SiteAdder_9add_to_scope, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_9add_to_scope(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_self = 0;
  PyObject *__pyx_v_site = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("add_to_scope (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_site,0};
    PyObject* values[2] = {0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_site)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("add_to_scope", 1, 2, 2, 1); __PYX_ERR(1, 1186, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "add_to_scope") < 0)) __PYX_ERR(1, 1186, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 2) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
    }
    __pyx_v_self = values[0];
    __pyx_v_site = values[1];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("add_to_scope", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1186, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.add_to_scope", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_9SiteAdder_8add_to_scope(__pyx_self, __pyx_v_self, __pyx_v_site);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1190
 *             self.scope.add(site)
 *         else:
 *             self.scope = sortedcontainers.sortedlist.SortedList([site], key=lambda x: x.start)             # <<<<<<<<<<<<<<
 *             self.current_chrom = site.chrom
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_12add_to_scope_lambda2(PyObject *__pyx_self, PyObject *__pyx_v_x); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_12add_to_scope_lambda2 = {"lambda2", (PyCFunction)__pyx_pw_5dysgu_5graph_9SiteAdder_12add_to_scope_lambda2, METH_O, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_12add_to_scope_lambda2(PyObject *__pyx_self, PyObject *__pyx_v_x) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("lambda2 (wrapper)", 0);
  __pyx_r = __pyx_lambda_funcdef_lambda2(__pyx_self, ((PyObject *)__pyx_v_x));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_lambda_funcdef_lambda2(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_x) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("lambda2", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_x, __pyx_n_s_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1190, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.add_to_scope.lambda2", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1186
 *             return -1
 * 
 *     def add_to_scope(self, site):             # <<<<<<<<<<<<<<
 *         if site.chrom == self.current_chrom:
 *             self.scope.add(site)
 */

static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_8add_to_scope(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_site) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("add_to_scope", 0);

  /* "dysgu/graph.pyx":1187
 * 
 *     def add_to_scope(self, site):
 *         if site.chrom == self.current_chrom:             # <<<<<<<<<<<<<<
 *             self.scope.add(site)
 *         else:
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_chrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1187, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_current_chrom); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1187, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyObject_RichCompare(__pyx_t_1, __pyx_t_2, Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1187, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1187, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":1188
 *     def add_to_scope(self, site):
 *         if site.chrom == self.current_chrom:
 *             self.scope.add(site)             # <<<<<<<<<<<<<<
 *         else:
 *             self.scope = sortedcontainers.sortedlist.SortedList([site], key=lambda x: x.start)
 */
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_scope); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1188, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_add); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1188, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
      __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_1);
      if (likely(__pyx_t_2)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
        __Pyx_INCREF(__pyx_t_2);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_1, function);
      }
    }
    __pyx_t_3 = (__pyx_t_2) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_2, __pyx_v_site) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_v_site);
    __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
    if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1188, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

    /* "dysgu/graph.pyx":1187
 * 
 *     def add_to_scope(self, site):
 *         if site.chrom == self.current_chrom:             # <<<<<<<<<<<<<<
 *             self.scope.add(site)
 *         else:
 */
    goto __pyx_L3;
  }

  /* "dysgu/graph.pyx":1190
 *             self.scope.add(site)
 *         else:
 *             self.scope = sortedcontainers.sortedlist.SortedList([site], key=lambda x: x.start)             # <<<<<<<<<<<<<<
 *             self.current_chrom = site.chrom
 * 
 */
  /*else*/ {
    __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_sortedcontainers); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_sortedlist); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_SortedList); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_v_site);
    __Pyx_GIVEREF(__pyx_v_site);
    PyList_SET_ITEM(__pyx_t_1, 0, __pyx_v_site);
    __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
    __pyx_t_1 = 0;
    __pyx_t_1 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_12add_to_scope_lambda2, 0, __pyx_n_s_SiteAdder_add_to_scope_locals_la, NULL, __pyx_n_s_dysgu_graph, __pyx_d, NULL); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_key, __pyx_t_5) < 0) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_5 = __Pyx_PyObject_Call(__pyx_t_3, __pyx_t_2, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_scope, __pyx_t_5) < 0) __PYX_ERR(1, 1190, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1191
 *         else:
 *             self.scope = sortedcontainers.sortedlist.SortedList([site], key=lambda x: x.start)
 *             self.current_chrom = site.chrom             # <<<<<<<<<<<<<<
 * 
 *     def add_any_sites(self, int chrom, int pos, G, PairedEndScoper_t pe_scope, NodeToName node_to_name, cluster_dist):
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_chrom); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1191, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_current_chrom, __pyx_t_5) < 0) __PYX_ERR(1, 1191, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  }
  __pyx_L3:;

  /* "dysgu/graph.pyx":1186
 *             return -1
 * 
 *     def add_to_scope(self, site):             # <<<<<<<<<<<<<<
 *         if site.chrom == self.current_chrom:
 *             self.scope.add(site)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.add_to_scope", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1193
 *             self.current_chrom = site.chrom
 * 
 *     def add_any_sites(self, int chrom, int pos, G, PairedEndScoper_t pe_scope, NodeToName node_to_name, cluster_dist):             # <<<<<<<<<<<<<<
 * 
 *         cdef int node_name, start, stop, file_index
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_11add_any_sites(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9SiteAdder_11add_any_sites = {"add_any_sites", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_9SiteAdder_11add_any_sites, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9SiteAdder_11add_any_sites(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_self = 0;
  int __pyx_v_chrom;
  int __pyx_v_pos;
  PyObject *__pyx_v_G = 0;
  __pyx_t_5dysgu_5graph_PairedEndScoper_t __pyx_v_pe_scope = 0;
  struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_node_to_name = 0;
  PyObject *__pyx_v_cluster_dist = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("add_any_sites (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_chrom,&__pyx_n_s_pos,&__pyx_n_s_G,&__pyx_n_s_pe_scope,&__pyx_n_s_node_to_name,&__pyx_n_s_cluster_dist,0};
    PyObject* values[7] = {0,0,0,0,0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        CYTHON_FALLTHROUGH;
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_chrom)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("add_any_sites", 1, 7, 7, 1); __PYX_ERR(1, 1193, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pos)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("add_any_sites", 1, 7, 7, 2); __PYX_ERR(1, 1193, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  3:
        if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_G)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("add_any_sites", 1, 7, 7, 3); __PYX_ERR(1, 1193, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  4:
        if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pe_scope)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("add_any_sites", 1, 7, 7, 4); __PYX_ERR(1, 1193, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  5:
        if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_node_to_name)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("add_any_sites", 1, 7, 7, 5); __PYX_ERR(1, 1193, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  6:
        if (likely((values[6] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_cluster_dist)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("add_any_sites", 1, 7, 7, 6); __PYX_ERR(1, 1193, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "add_any_sites") < 0)) __PYX_ERR(1, 1193, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 7) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
      values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
      values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
      values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
      values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
    }
    __pyx_v_self = values[0];
    __pyx_v_chrom = __Pyx_PyInt_As_int(values[1]); if (unlikely((__pyx_v_chrom == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1193, __pyx_L3_error)
    __pyx_v_pos = __Pyx_PyInt_As_int(values[2]); if (unlikely((__pyx_v_pos == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1193, __pyx_L3_error)
    __pyx_v_G = values[3];
    __pyx_v_pe_scope = ((__pyx_t_5dysgu_5graph_PairedEndScoper_t)values[4]);
    __pyx_v_node_to_name = ((struct __pyx_obj_5dysgu_5graph_NodeToName *)values[5]);
    __pyx_v_cluster_dist = values[6];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("add_any_sites", 1, 7, 7, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1193, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.add_any_sites", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_pe_scope), __pyx_ptype_5dysgu_5graph_PairedEndScoper, 1, "pe_scope", 0))) __PYX_ERR(1, 1193, __pyx_L1_error)
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_node_to_name), __pyx_ptype_5dysgu_5graph_NodeToName, 1, "node_to_name", 0))) __PYX_ERR(1, 1193, __pyx_L1_error)
  __pyx_r = __pyx_pf_5dysgu_5graph_9SiteAdder_10add_any_sites(__pyx_self, __pyx_v_self, __pyx_v_chrom, __pyx_v_pos, __pyx_v_G, __pyx_v_pe_scope, __pyx_v_node_to_name, __pyx_v_cluster_dist);

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_9SiteAdder_10add_any_sites(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, int __pyx_v_chrom, int __pyx_v_pos, PyObject *__pyx_v_G, __pyx_t_5dysgu_5graph_PairedEndScoper_t __pyx_v_pe_scope, struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_node_to_name, PyObject *__pyx_v_cluster_dist) {
  int __pyx_v_node_name;
  __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum;
  PyObject *__pyx_v_s = NULL;
  PyObject *__pyx_v_p = NULL;
  PyObject *__pyx_v_site = NULL;
  PyObject *__pyx_v_length = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_t_3;
  int __pyx_t_4;
  Py_ssize_t __pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_t_7;
  int __pyx_t_8;
  int __pyx_t_9;
  int __pyx_t_10;
  int __pyx_t_11;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("add_any_sites", 0);

  /* "dysgu/graph.pyx":1198
 *         cdef ReadEnum_t read_enum
 * 
 *         if chrom not in self.sites_queue:             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_chrom); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1198, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_queue); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1198, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = (__Pyx_PySequence_ContainsTF(__pyx_t_1, __pyx_t_2, Py_NE)); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1198, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_4 = (__pyx_t_3 != 0);
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":1199
 * 
 *         if chrom not in self.sites_queue:
 *             return             # <<<<<<<<<<<<<<
 * 
 *         s = self.sites_queue[chrom]
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_r = Py_None; __Pyx_INCREF(Py_None);
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1198
 *         cdef ReadEnum_t read_enum
 * 
 *         if chrom not in self.sites_queue:             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  }

  /* "dysgu/graph.pyx":1201
 *             return
 * 
 *         s = self.sites_queue[chrom]             # <<<<<<<<<<<<<<
 *         if len(s) == 0:
 *             return
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_queue); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1201, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_2, __pyx_v_chrom, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1201, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_v_s = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1202
 * 
 *         s = self.sites_queue[chrom]
 *         if len(s) == 0:             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  __pyx_t_5 = PyObject_Length(__pyx_v_s); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1202, __pyx_L1_error)
  __pyx_t_4 = ((__pyx_t_5 == 0) != 0);
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":1203
 *         s = self.sites_queue[chrom]
 *         if len(s) == 0:
 *             return             # <<<<<<<<<<<<<<
 * 
 *         p = s[0]
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_r = Py_None; __Pyx_INCREF(Py_None);
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1202
 * 
 *         s = self.sites_queue[chrom]
 *         if len(s) == 0:             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  }

  /* "dysgu/graph.pyx":1205
 *             return
 * 
 *         p = s[0]             # <<<<<<<<<<<<<<
 * 
 *         # p0 not in scope yet
 */
  __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_s, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1205, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_p = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1208
 * 
 *         # p0 not in scope yet
 *         if pos + cluster_dist < p.start:             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1208, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyNumber_Add(__pyx_t_1, __pyx_v_cluster_dist); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1208, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_p, __pyx_n_s_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1208, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_6 = PyObject_RichCompare(__pyx_t_2, __pyx_t_1, Py_LT); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1208, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1208, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  if (__pyx_t_4) {

    /* "dysgu/graph.pyx":1209
 *         # p0 not in scope yet
 *         if pos + cluster_dist < p.start:
 *             return             # <<<<<<<<<<<<<<
 * 
 *         # p0 behind
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_r = Py_None; __Pyx_INCREF(Py_None);
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1208
 * 
 *         # p0 not in scope yet
 *         if pos + cluster_dist < p.start:             # <<<<<<<<<<<<<<
 *             return
 * 
 */
  }

  /* "dysgu/graph.pyx":1212
 * 
 *         # p0 behind
 *         while p.start < pos - cluster_dist and len(s) > 0:             # <<<<<<<<<<<<<<
 *             s.popleft()
 *             if len(s) == 0:
 */
  while (1) {
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_p, __pyx_n_s_start); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1212, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1212, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_2 = PyNumber_Subtract(__pyx_t_1, __pyx_v_cluster_dist); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1212, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = PyObject_RichCompare(__pyx_t_6, __pyx_t_2, Py_LT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1212, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1212, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (__pyx_t_3) {
    } else {
      __pyx_t_4 = __pyx_t_3;
      goto __pyx_L8_bool_binop_done;
    }
    __pyx_t_5 = PyObject_Length(__pyx_v_s); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1212, __pyx_L1_error)
    __pyx_t_3 = ((__pyx_t_5 > 0) != 0);
    __pyx_t_4 = __pyx_t_3;
    __pyx_L8_bool_binop_done:;
    if (!__pyx_t_4) break;

    /* "dysgu/graph.pyx":1213
 *         # p0 behind
 *         while p.start < pos - cluster_dist and len(s) > 0:
 *             s.popleft()             # <<<<<<<<<<<<<<
 *             if len(s) == 0:
 *                 return
 */
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_s, __pyx_n_s_popleft); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1213, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_6 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_2);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_2, function);
      }
    }
    __pyx_t_1 = (__pyx_t_6) ? __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_6) : __Pyx_PyObject_CallNoArg(__pyx_t_2);
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1213, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

    /* "dysgu/graph.pyx":1214
 *         while p.start < pos - cluster_dist and len(s) > 0:
 *             s.popleft()
 *             if len(s) == 0:             # <<<<<<<<<<<<<<
 *                 return
 *             p = s[0]
 */
    __pyx_t_5 = PyObject_Length(__pyx_v_s); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1214, __pyx_L1_error)
    __pyx_t_4 = ((__pyx_t_5 == 0) != 0);
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":1215
 *             s.popleft()
 *             if len(s) == 0:
 *                 return             # <<<<<<<<<<<<<<
 *             p = s[0]
 * 
 */
      __Pyx_XDECREF(__pyx_r);
      __pyx_r = Py_None; __Pyx_INCREF(Py_None);
      goto __pyx_L0;

      /* "dysgu/graph.pyx":1214
 *         while p.start < pos - cluster_dist and len(s) > 0:
 *             s.popleft()
 *             if len(s) == 0:             # <<<<<<<<<<<<<<
 *                 return
 *             p = s[0]
 */
    }

    /* "dysgu/graph.pyx":1216
 *             if len(s) == 0:
 *                 return
 *             p = s[0]             # <<<<<<<<<<<<<<
 * 
 *         # add local events to pos
 */
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_s, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1216, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF_SET(__pyx_v_p, __pyx_t_1);
    __pyx_t_1 = 0;
  }

  /* "dysgu/graph.pyx":1219
 * 
 *         # add local events to pos
 *         while abs(p.start - pos) < cluster_dist and len(s) > 0:             # <<<<<<<<<<<<<<
 * 
 *             site = p
 */
  while (1) {
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_p, __pyx_n_s_start); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1219, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_pos); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1219, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_6 = PyNumber_Subtract(__pyx_t_1, __pyx_t_2); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1219, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_2 = __Pyx_PyNumber_Absolute(__pyx_t_6); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1219, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = PyObject_RichCompare(__pyx_t_2, __pyx_v_cluster_dist, Py_LT); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1219, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1219, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (__pyx_t_3) {
    } else {
      __pyx_t_4 = __pyx_t_3;
      goto __pyx_L13_bool_binop_done;
    }
    __pyx_t_5 = PyObject_Length(__pyx_v_s); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1219, __pyx_L1_error)
    __pyx_t_3 = ((__pyx_t_5 > 0) != 0);
    __pyx_t_4 = __pyx_t_3;
    __pyx_L13_bool_binop_done:;
    if (!__pyx_t_4) break;

    /* "dysgu/graph.pyx":1221
 *         while abs(p.start - pos) < cluster_dist and len(s) > 0:
 * 
 *             site = p             # <<<<<<<<<<<<<<
 * 
 *             if site.svtype == "DEL":
 */
    __Pyx_INCREF(__pyx_v_p);
    __Pyx_XDECREF_SET(__pyx_v_site, __pyx_v_p);

    /* "dysgu/graph.pyx":1223
 *             site = p
 * 
 *             if site.svtype == "DEL":             # <<<<<<<<<<<<<<
 *                 read_enum = DELETION
 *                 length = site.svlen
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_svtype); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1223, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_4 = (__Pyx_PyUnicode_Equals(__pyx_t_6, __pyx_n_u_DEL, Py_EQ)); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1223, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":1224
 * 
 *             if site.svtype == "DEL":
 *                 read_enum = DELETION             # <<<<<<<<<<<<<<
 *                 length = site.svlen
 *             elif site.svtype == "INS":
 */
      __pyx_v_read_enum = __pyx_e_5dysgu_5graph_DELETION;

      /* "dysgu/graph.pyx":1225
 *             if site.svtype == "DEL":
 *                 read_enum = DELETION
 *                 length = site.svlen             # <<<<<<<<<<<<<<
 *             elif site.svtype == "INS":
 *                 read_enum = INSERTION
 */
      __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_svlen); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1225, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_XDECREF_SET(__pyx_v_length, __pyx_t_6);
      __pyx_t_6 = 0;

      /* "dysgu/graph.pyx":1223
 *             site = p
 * 
 *             if site.svtype == "DEL":             # <<<<<<<<<<<<<<
 *                 read_enum = DELETION
 *                 length = site.svlen
 */
      goto __pyx_L15;
    }

    /* "dysgu/graph.pyx":1226
 *                 read_enum = DELETION
 *                 length = site.svlen
 *             elif site.svtype == "INS":             # <<<<<<<<<<<<<<
 *                 read_enum = INSERTION
 *                 length = site.svlen
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_svtype); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1226, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_4 = (__Pyx_PyUnicode_Equals(__pyx_t_6, __pyx_n_u_INS, Py_EQ)); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(1, 1226, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":1227
 *                 length = site.svlen
 *             elif site.svtype == "INS":
 *                 read_enum = INSERTION             # <<<<<<<<<<<<<<
 *                 length = site.svlen
 *             else:
 */
      __pyx_v_read_enum = __pyx_e_5dysgu_5graph_INSERTION;

      /* "dysgu/graph.pyx":1228
 *             elif site.svtype == "INS":
 *                 read_enum = INSERTION
 *                 length = site.svlen             # <<<<<<<<<<<<<<
 *             else:
 *                 read_enum = BREAKEND
 */
      __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_svlen); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1228, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_XDECREF_SET(__pyx_v_length, __pyx_t_6);
      __pyx_t_6 = 0;

      /* "dysgu/graph.pyx":1226
 *                 read_enum = DELETION
 *                 length = site.svlen
 *             elif site.svtype == "INS":             # <<<<<<<<<<<<<<
 *                 read_enum = INSERTION
 *                 length = site.svlen
 */
      goto __pyx_L15;
    }

    /* "dysgu/graph.pyx":1230
 *                 length = site.svlen
 *             else:
 *                 read_enum = BREAKEND             # <<<<<<<<<<<<<<
 *                 length = 0  # cluster by distance only
 * 
 */
    /*else*/ {
      __pyx_v_read_enum = __pyx_e_5dysgu_5graph_BREAKEND;

      /* "dysgu/graph.pyx":1231
 *             else:
 *                 read_enum = BREAKEND
 *                 length = 0  # cluster by distance only             # <<<<<<<<<<<<<<
 * 
 *             node_name = G.addNode()
 */
      __Pyx_INCREF(__pyx_int_0);
      __Pyx_XDECREF_SET(__pyx_v_length, __pyx_int_0);
    }
    __pyx_L15:;

    /* "dysgu/graph.pyx":1233
 *                 length = 0  # cluster by distance only
 * 
 *             node_name = G.addNode()             # <<<<<<<<<<<<<<
 * 
 *             self.sites_index[node_name] = site
 */
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_addNode); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1233, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_1 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_2))) {
      __pyx_t_1 = PyMethod_GET_SELF(__pyx_t_2);
      if (likely(__pyx_t_1)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
        __Pyx_INCREF(__pyx_t_1);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_2, function);
      }
    }
    __pyx_t_6 = (__pyx_t_1) ? __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_1) : __Pyx_PyObject_CallNoArg(__pyx_t_2);
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1233, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_7 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_7 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1233, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_v_node_name = __pyx_t_7;

    /* "dysgu/graph.pyx":1235
 *             node_name = G.addNode()
 * 
 *             self.sites_index[node_name] = site             # <<<<<<<<<<<<<<
 *             self.sites_index_r[site] = node_name
 * 
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_index); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1235, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    if (unlikely(__Pyx_SetItemInt(__pyx_t_6, __pyx_v_node_name, __pyx_v_site, int, 1, __Pyx_PyInt_From_int, 0, 1, 0) < 0)) __PYX_ERR(1, 1235, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":1236
 * 
 *             self.sites_index[node_name] = site
 *             self.sites_index_r[site] = node_name             # <<<<<<<<<<<<<<
 * 
 *             pe_scope.add_item(node_name, site.chrom, site.start, site.chrom2, site.end, read_enum, length)
 */
    __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_node_name); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1236, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_index_r); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1236, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    if (unlikely(PyObject_SetItem(__pyx_t_2, __pyx_v_site, __pyx_t_6) < 0)) __PYX_ERR(1, 1236, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":1238
 *             self.sites_index_r[site] = node_name
 * 
 *             pe_scope.add_item(node_name, site.chrom, site.start, site.chrom2, site.end, read_enum, length)             # <<<<<<<<<<<<<<
 *             pe_scope.local_chrom = chrom  # needs setting otherwise scope can be cleared when new read is added
 *             node_to_name.append(0, 0, 0, 0, 0, 0, 0)  # this should not be needed, but for now it is
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_chrom); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_7 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_7 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_start); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_8 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_8 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_chrom2); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_9 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_site, __pyx_n_s_end); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_10 = __Pyx_PyInt_As_int(__pyx_t_6); if (unlikely((__pyx_t_10 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1238, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_11 = __Pyx_PyInt_As_int(__pyx_v_length); if (unlikely((__pyx_t_11 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1238, __pyx_L1_error)
    ((struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper *)__pyx_v_pe_scope->__pyx_vtab)->add_item(((struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)__pyx_v_pe_scope), __pyx_v_node_name, __pyx_t_7, __pyx_t_8, __pyx_t_9, __pyx_t_10, __pyx_v_read_enum, __pyx_t_11);

    /* "dysgu/graph.pyx":1239
 * 
 *             pe_scope.add_item(node_name, site.chrom, site.start, site.chrom2, site.end, read_enum, length)
 *             pe_scope.local_chrom = chrom  # needs setting otherwise scope can be cleared when new read is added             # <<<<<<<<<<<<<<
 *             node_to_name.append(0, 0, 0, 0, 0, 0, 0)  # this should not be needed, but for now it is
 * 
 */
    __pyx_v_pe_scope->local_chrom = __pyx_v_chrom;

    /* "dysgu/graph.pyx":1240
 *             pe_scope.add_item(node_name, site.chrom, site.start, site.chrom2, site.end, read_enum, length)
 *             pe_scope.local_chrom = chrom  # needs setting otherwise scope can be cleared when new read is added
 *             node_to_name.append(0, 0, 0, 0, 0, 0, 0)  # this should not be needed, but for now it is             # <<<<<<<<<<<<<<
 * 
 *             self.count += 1
 */
    ((struct __pyx_vtabstruct_5dysgu_5graph_NodeToName *)__pyx_v_node_to_name->__pyx_vtab)->append(__pyx_v_node_to_name, 0, 0, 0, 0, 0, 0, 0);

    /* "dysgu/graph.pyx":1242
 *             node_to_name.append(0, 0, 0, 0, 0, 0, 0)  # this should not be needed, but for now it is
 * 
 *             self.count += 1             # <<<<<<<<<<<<<<
 *             self.sites_queue[chrom].popleft()
 *             self.add_to_scope(site)
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_count); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1242, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_2 = __Pyx_PyInt_AddObjC(__pyx_t_6, __pyx_int_1, 1, 1, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1242, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_count, __pyx_t_2) < 0) __PYX_ERR(1, 1242, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

    /* "dysgu/graph.pyx":1243
 * 
 *             self.count += 1
 *             self.sites_queue[chrom].popleft()             # <<<<<<<<<<<<<<
 *             self.add_to_scope(site)
 * 
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_sites_queue); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1243, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_t_6, __pyx_v_chrom, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1243, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_popleft); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1243, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_6))) {
      __pyx_t_1 = PyMethod_GET_SELF(__pyx_t_6);
      if (likely(__pyx_t_1)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
        __Pyx_INCREF(__pyx_t_1);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_6, function);
      }
    }
    __pyx_t_2 = (__pyx_t_1) ? __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_t_1) : __Pyx_PyObject_CallNoArg(__pyx_t_6);
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1243, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

    /* "dysgu/graph.pyx":1244
 *             self.count += 1
 *             self.sites_queue[chrom].popleft()
 *             self.add_to_scope(site)             # <<<<<<<<<<<<<<
 * 
 *             if len(s) > 0:
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_add_to_scope); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1244, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_1 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_6))) {
      __pyx_t_1 = PyMethod_GET_SELF(__pyx_t_6);
      if (likely(__pyx_t_1)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
        __Pyx_INCREF(__pyx_t_1);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_6, function);
      }
    }
    __pyx_t_2 = (__pyx_t_1) ? __Pyx_PyObject_Call2Args(__pyx_t_6, __pyx_t_1, __pyx_v_site) : __Pyx_PyObject_CallOneArg(__pyx_t_6, __pyx_v_site);
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
    if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1244, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

    /* "dysgu/graph.pyx":1246
 *             self.add_to_scope(site)
 * 
 *             if len(s) > 0:             # <<<<<<<<<<<<<<
 *                 p = s[0]
 *             else:
 */
    __pyx_t_5 = PyObject_Length(__pyx_v_s); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1246, __pyx_L1_error)
    __pyx_t_4 = ((__pyx_t_5 > 0) != 0);
    if (__pyx_t_4) {

      /* "dysgu/graph.pyx":1247
 * 
 *             if len(s) > 0:
 *                 p = s[0]             # <<<<<<<<<<<<<<
 *             else:
 *                 break
 */
      __pyx_t_2 = __Pyx_GetItemInt(__pyx_v_s, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1247, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __Pyx_DECREF_SET(__pyx_v_p, __pyx_t_2);
      __pyx_t_2 = 0;

      /* "dysgu/graph.pyx":1246
 *             self.add_to_scope(site)
 * 
 *             if len(s) > 0:             # <<<<<<<<<<<<<<
 *                 p = s[0]
 *             else:
 */
      goto __pyx_L16;
    }

    /* "dysgu/graph.pyx":1249
 *                 p = s[0]
 *             else:
 *                 break             # <<<<<<<<<<<<<<
 * 
 * 
 */
    /*else*/ {
      goto __pyx_L12_break;
    }
    __pyx_L16:;
  }
  __pyx_L12_break:;

  /* "dysgu/graph.pyx":1193
 *             self.current_chrom = site.chrom
 * 
 *     def add_any_sites(self, int chrom, int pos, G, PairedEndScoper_t pe_scope, NodeToName node_to_name, cluster_dist):             # <<<<<<<<<<<<<<
 * 
 *         cdef int node_name, start, stop, file_index
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("dysgu.graph.SiteAdder.add_any_sites", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_s);
  __Pyx_XDECREF(__pyx_v_p);
  __Pyx_XDECREF(__pyx_v_site);
  __Pyx_XDECREF(__pyx_v_length);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1252
 * 
 * 
 * cpdef tuple construct_graph(genome_scanner, infile, int max_dist, int clustering_dist, int k=16, int m=7, int clip_l=21,             # <<<<<<<<<<<<<<
 *                             int min_sv_size=30,
 *                             int minimizer_support_thresh=2, int minimizer_breadth=3,
 */

static PyObject *__pyx_pw_5dysgu_5graph_1construct_graph(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_construct_graph(PyObject *__pyx_v_genome_scanner, PyObject *__pyx_v_infile, int __pyx_v_max_dist, int __pyx_v_clustering_dist, CYTHON_UNUSED int __pyx_skip_dispatch, struct __pyx_opt_args_5dysgu_5graph_construct_graph *__pyx_optional_args) {
  int __pyx_v_k = ((int)16);
  int __pyx_v_m = ((int)7);
  int __pyx_v_clip_l = ((int)21);
  int __pyx_v_min_sv_size = ((int)30);
  int __pyx_v_minimizer_support_thresh = ((int)2);
  int __pyx_v_minimizer_breadth = ((int)3);
  int __pyx_v_minimizer_dist = ((int)10);
  int __pyx_v_mapq_thresh = ((int)1);
  int __pyx_v_paired_end = ((int)1);
  int __pyx_v_read_length = ((int)0x96);

  /* "dysgu/graph.pyx":1256
 *                             int minimizer_support_thresh=2, int minimizer_breadth=3,
 *                             int minimizer_dist=10, int mapq_thresh=1, debug=None, procs=1,
 *                             int paired_end=1, int read_length=150, bint contigs=True,             # <<<<<<<<<<<<<<
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):
 */
  int __pyx_v_contigs = ((int)1);
  float __pyx_v_norm_thresh = ((float)100.0);
  float __pyx_v_spd_thresh = ((float)0.3);

  /* "dysgu/graph.pyx":1257
 *                             int minimizer_dist=10, int mapq_thresh=1, debug=None, procs=1,
 *                             int paired_end=1, int read_length=150, bint contigs=True,
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,             # <<<<<<<<<<<<<<
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):
 * 
 */
  int __pyx_v_mm_only = ((int)0);

  /* "dysgu/graph.pyx":1258
 *                             int paired_end=1, int read_length=150, bint contigs=True,
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):             # <<<<<<<<<<<<<<
 * 
 *     t0 = time.time()
 */
  PyObject *__pyx_v_sites = ((PyObject *)Py_None);
  int __pyx_v_trust_ins_len = ((int)1);
  PyObject *__pyx_v_low_mem = ((PyObject *)Py_False);
  PyObject *__pyx_v_temp_dir = ((PyObject *)__pyx_kp_u__13);
  CYTHON_UNUSED PyObject *__pyx_v_t0 = NULL;
  __pyx_t_5dysgu_5graph_TemplateEdges_t __pyx_v_template_edges = 0;
  int __pyx_v_event_pos;
  int __pyx_v_cigar_index;
  int __pyx_v_opp;
  int __pyx_v_length;
  struct __pyx_obj_5dysgu_5graph_NodeToName *__pyx_v_node_to_name = NULL;
  __pyx_t_5dysgu_5graph_ClipScoper_t __pyx_v_clip_scope = 0;
  __pyx_t_5dysgu_5graph_PairedEndScoper_t __pyx_v_pe_scope = 0;
  PyObject *__pyx_v_bad_clip_counter = NULL;
  PyObject *__pyx_v_G = NULL;
  PyObject *__pyx_v_site_adder = NULL;
  PyObject *__pyx_v_overlap_regions = NULL;
  PyObject *__pyx_v_gettid = NULL;
  long __pyx_v_tell;
  int __pyx_v_pos2;
  int __pyx_v_added;
  __pyx_t_5dysgu_5graph_ReadEnum_t __pyx_v_read_enum;
  int __pyx_v_clipped;
  std::vector<struct __pyx_t_5dysgu_5graph_CigarEvent>  __pyx_v_events_to_add;
  std::vector<struct __pyx_t_5dysgu_5graph_CigarEvent> ::iterator __pyx_v_itr_events;
  struct __pyx_t_5dysgu_5graph_CigarEvent __pyx_v_v;
  PyObject *__pyx_v_chunk = NULL;
  PyObject *__pyx_v_r = NULL;
  PyObject *__pyx_v_left_clip_size = NULL;
  PyObject *__pyx_v_right_clip_size = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  int __pyx_t_8;
  int __pyx_t_9;
  Py_ssize_t __pyx_t_10;
  PyObject *(*__pyx_t_11)(PyObject *);
  Py_ssize_t __pyx_t_12;
  PyObject *(*__pyx_t_13)(PyObject *);
  PyObject *(*__pyx_t_14)(PyObject *);
  long __pyx_t_15;
  Py_ssize_t __pyx_t_16;
  PyObject *(*__pyx_t_17)(PyObject *);
  int __pyx_t_18;
  int __pyx_t_19;
  int __pyx_t_20;
  int __pyx_t_21;
  Py_UCS4 __pyx_t_22;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("construct_graph", 0);
  if (__pyx_optional_args) {
    if (__pyx_optional_args->__pyx_n > 0) {
      __pyx_v_k = __pyx_optional_args->k;
      if (__pyx_optional_args->__pyx_n > 1) {
        __pyx_v_m = __pyx_optional_args->m;
        if (__pyx_optional_args->__pyx_n > 2) {
          __pyx_v_clip_l = __pyx_optional_args->clip_l;
          if (__pyx_optional_args->__pyx_n > 3) {
            __pyx_v_min_sv_size = __pyx_optional_args->min_sv_size;
            if (__pyx_optional_args->__pyx_n > 4) {
              __pyx_v_minimizer_support_thresh = __pyx_optional_args->minimizer_support_thresh;
              if (__pyx_optional_args->__pyx_n > 5) {
                __pyx_v_minimizer_breadth = __pyx_optional_args->minimizer_breadth;
                if (__pyx_optional_args->__pyx_n > 6) {
                  __pyx_v_minimizer_dist = __pyx_optional_args->minimizer_dist;
                  if (__pyx_optional_args->__pyx_n > 7) {
                    __pyx_v_mapq_thresh = __pyx_optional_args->mapq_thresh;
                    if (__pyx_optional_args->__pyx_n > 10) {
                      __pyx_v_paired_end = __pyx_optional_args->paired_end;
                      if (__pyx_optional_args->__pyx_n > 11) {
                        __pyx_v_read_length = __pyx_optional_args->read_length;
                        if (__pyx_optional_args->__pyx_n > 12) {
                          __pyx_v_contigs = __pyx_optional_args->contigs;
                          if (__pyx_optional_args->__pyx_n > 13) {
                            __pyx_v_norm_thresh = __pyx_optional_args->norm_thresh;
                            if (__pyx_optional_args->__pyx_n > 14) {
                              __pyx_v_spd_thresh = __pyx_optional_args->spd_thresh;
                              if (__pyx_optional_args->__pyx_n > 15) {
                                __pyx_v_mm_only = __pyx_optional_args->mm_only;
                                if (__pyx_optional_args->__pyx_n > 16) {
                                  __pyx_v_sites = __pyx_optional_args->sites;
                                  if (__pyx_optional_args->__pyx_n > 17) {
                                    __pyx_v_trust_ins_len = __pyx_optional_args->trust_ins_len;
                                    if (__pyx_optional_args->__pyx_n > 18) {
                                      __pyx_v_low_mem = __pyx_optional_args->low_mem;
                                      if (__pyx_optional_args->__pyx_n > 19) {
                                        __pyx_v_temp_dir = __pyx_optional_args->temp_dir;
                                      }
                                    }
                                  }
                                }
                              }
                            }
                          }
                        }
                      }
                    }
                  }
                }
              }
            }
          }
        }
      }
    }
  }

  /* "dysgu/graph.pyx":1260
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):
 * 
 *     t0 = time.time()             # <<<<<<<<<<<<<<
 *     logging.info("Building graph with clustering {} bp".format(clustering_dist))
 * 
 */
  __Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_time); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1260, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_time); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1260, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_3))) {
    __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_3);
    if (likely(__pyx_t_2)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
      __Pyx_INCREF(__pyx_t_2);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_3, function);
    }
  }
  __pyx_t_1 = (__pyx_t_2) ? __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_2) : __Pyx_PyObject_CallNoArg(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1260, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_t0 = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1261
 * 
 *     t0 = time.time()
 *     logging.info("Building graph with clustering {} bp".format(clustering_dist))             # <<<<<<<<<<<<<<
 * 
 *     cdef TemplateEdges_t template_edges = TemplateEdges()  # Edges are added between alignments from same template, after building main graph
 */
  __Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_logging); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1261, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_n_s_info); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1261, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_kp_u_Building_graph_with_clustering_b, __pyx_n_s_format); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1261, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_clustering_dist); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1261, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
    __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_4);
    if (likely(__pyx_t_6)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
      __Pyx_INCREF(__pyx_t_6);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_4, function);
    }
  }
  __pyx_t_3 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_4, __pyx_t_6, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1261, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_4 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_2))) {
    __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_2);
    if (likely(__pyx_t_4)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
      __Pyx_INCREF(__pyx_t_4);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_2, function);
    }
  }
  __pyx_t_1 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_2, __pyx_t_4, __pyx_t_3) : __Pyx_PyObject_CallOneArg(__pyx_t_2, __pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1261, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1263
 *     logging.info("Building graph with clustering {} bp".format(clustering_dist))
 * 
 *     cdef TemplateEdges_t template_edges = TemplateEdges()  # Edges are added between alignments from same template, after building main graph             # <<<<<<<<<<<<<<
 *     cdef int event_pos, cigar_index, opp, length
 *     node_to_name = NodeToName()  # Map of nodes -> read ids
 */
  __pyx_t_1 = __Pyx_PyObject_CallNoArg(((PyObject *)__pyx_ptype_5dysgu_5graph_TemplateEdges)); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1263, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_template_edges = ((__pyx_t_5dysgu_5graph_TemplateEdges_t)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1265
 *     cdef TemplateEdges_t template_edges = TemplateEdges()  # Edges are added between alignments from same template, after building main graph
 *     cdef int event_pos, cigar_index, opp, length
 *     node_to_name = NodeToName()  # Map of nodes -> read ids             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_CallNoArg(((PyObject *)__pyx_ptype_5dysgu_5graph_NodeToName)); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1265, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_node_to_name = ((struct __pyx_obj_5dysgu_5graph_NodeToName *)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1268
 * 
 * 
 *     cdef ClipScoper_t clip_scope = ClipScoper(minimizer_dist, k=k, m=m, clip_length=clip_l,  # Keeps track of local reads             # <<<<<<<<<<<<<<
 *                        minimizer_support_thresh=minimizer_support_thresh,
 *                        minimizer_breadth=minimizer_breadth, read_length=read_length)
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_minimizer_dist); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
  __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyDict_NewPresized(6); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_k); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_k, __pyx_t_3) < 0) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_m); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_m, __pyx_t_3) < 0) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_clip_l); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_clip_length, __pyx_t_3) < 0) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1269
 * 
 *     cdef ClipScoper_t clip_scope = ClipScoper(minimizer_dist, k=k, m=m, clip_length=clip_l,  # Keeps track of local reads
 *                        minimizer_support_thresh=minimizer_support_thresh,             # <<<<<<<<<<<<<<
 *                        minimizer_breadth=minimizer_breadth, read_length=read_length)
 * 
 */
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_minimizer_support_thresh); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1269, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_minimizer_support_thresh, __pyx_t_3) < 0) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1270
 *     cdef ClipScoper_t clip_scope = ClipScoper(minimizer_dist, k=k, m=m, clip_length=clip_l,  # Keeps track of local reads
 *                        minimizer_support_thresh=minimizer_support_thresh,
 *                        minimizer_breadth=minimizer_breadth, read_length=read_length)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_minimizer_breadth); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1270, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_minimizer_breadth, __pyx_t_3) < 0) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_read_length); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1270, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_s_read_length, __pyx_t_3) < 0) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1268
 * 
 * 
 *     cdef ClipScoper_t clip_scope = ClipScoper(minimizer_dist, k=k, m=m, clip_length=clip_l,  # Keeps track of local reads             # <<<<<<<<<<<<<<
 *                        minimizer_support_thresh=minimizer_support_thresh,
 *                        minimizer_breadth=minimizer_breadth, read_length=read_length)
 */
  __pyx_t_3 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_5dysgu_5graph_ClipScoper), __pyx_t_2, __pyx_t_1); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1268, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_clip_scope = ((__pyx_t_5dysgu_5graph_ClipScoper_t)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1274
 * 
 *     # Infers long-range connections, outside local scope using pe information
 *     cdef PairedEndScoper_t pe_scope = PairedEndScoper(max_dist, clustering_dist, infile.header.nreferences, norm_thresh, spd_thresh, paired_end)             # <<<<<<<<<<<<<<
 * 
 *     bad_clip_counter = BadClipCounter(infile.header.nreferences, low_mem, temp_dir)
 */
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_max_dist); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_clustering_dist); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_infile, __pyx_n_s_header); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_nreferences); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = PyFloat_FromDouble(__pyx_v_norm_thresh); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_5 = PyFloat_FromDouble(__pyx_v_spd_thresh); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_paired_end); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_t_7 = PyTuple_New(6); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_7, 1, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_4);
  PyTuple_SET_ITEM(__pyx_t_7, 2, __pyx_t_4);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_7, 3, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_5);
  PyTuple_SET_ITEM(__pyx_t_7, 4, __pyx_t_5);
  __Pyx_GIVEREF(__pyx_t_6);
  PyTuple_SET_ITEM(__pyx_t_7, 5, __pyx_t_6);
  __pyx_t_3 = 0;
  __pyx_t_1 = 0;
  __pyx_t_4 = 0;
  __pyx_t_2 = 0;
  __pyx_t_5 = 0;
  __pyx_t_6 = 0;
  __pyx_t_6 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_5dysgu_5graph_PairedEndScoper), __pyx_t_7, NULL); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1274, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_v_pe_scope = ((__pyx_t_5dysgu_5graph_PairedEndScoper_t)__pyx_t_6);
  __pyx_t_6 = 0;

  /* "dysgu/graph.pyx":1276
 *     cdef PairedEndScoper_t pe_scope = PairedEndScoper(max_dist, clustering_dist, infile.header.nreferences, norm_thresh, spd_thresh, paired_end)
 * 
 *     bad_clip_counter = BadClipCounter(infile.header.nreferences, low_mem, temp_dir)             # <<<<<<<<<<<<<<
 * 
 *     G = map_set_utils.Py_SimpleGraph()
 */
  __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_n_s_BadClipCounter); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1276, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_infile, __pyx_n_s_header); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1276, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_nreferences); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1276, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  __pyx_t_5 = NULL;
  __pyx_t_8 = 0;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_7))) {
    __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_7);
    if (likely(__pyx_t_5)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
      __Pyx_INCREF(__pyx_t_5);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_7, function);
      __pyx_t_8 = 1;
    }
  }
  #if CYTHON_FAST_PYCALL
  if (PyFunction_Check(__pyx_t_7)) {
    PyObject *__pyx_temp[4] = {__pyx_t_5, __pyx_t_2, __pyx_v_low_mem, __pyx_v_temp_dir};
    __pyx_t_6 = __Pyx_PyFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_8, 3+__pyx_t_8); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1276, __pyx_L1_error)
    __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  } else
  #endif
  #if CYTHON_FAST_PYCCALL
  if (__Pyx_PyFastCFunction_Check(__pyx_t_7)) {
    PyObject *__pyx_temp[4] = {__pyx_t_5, __pyx_t_2, __pyx_v_low_mem, __pyx_v_temp_dir};
    __pyx_t_6 = __Pyx_PyCFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_8, 3+__pyx_t_8); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1276, __pyx_L1_error)
    __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  } else
  #endif
  {
    __pyx_t_4 = PyTuple_New(3+__pyx_t_8); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1276, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    if (__pyx_t_5) {
      __Pyx_GIVEREF(__pyx_t_5); PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_5); __pyx_t_5 = NULL;
    }
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_4, 0+__pyx_t_8, __pyx_t_2);
    __Pyx_INCREF(__pyx_v_low_mem);
    __Pyx_GIVEREF(__pyx_v_low_mem);
    PyTuple_SET_ITEM(__pyx_t_4, 1+__pyx_t_8, __pyx_v_low_mem);
    __Pyx_INCREF(__pyx_v_temp_dir);
    __Pyx_GIVEREF(__pyx_v_temp_dir);
    PyTuple_SET_ITEM(__pyx_t_4, 2+__pyx_t_8, __pyx_v_temp_dir);
    __pyx_t_2 = 0;
    __pyx_t_6 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_4, NULL); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1276, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  }
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  __pyx_v_bad_clip_counter = __pyx_t_6;
  __pyx_t_6 = 0;

  /* "dysgu/graph.pyx":1278
 *     bad_clip_counter = BadClipCounter(infile.header.nreferences, low_mem, temp_dir)
 * 
 *     G = map_set_utils.Py_SimpleGraph()             # <<<<<<<<<<<<<<
 * 
 *     site_adder = None
 */
  __pyx_t_6 = __Pyx_PyObject_CallNoArg(((PyObject *)__pyx_ptype_5dysgu_13map_set_utils_Py_SimpleGraph)); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1278, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_v_G = __pyx_t_6;
  __pyx_t_6 = 0;

  /* "dysgu/graph.pyx":1280
 *     G = map_set_utils.Py_SimpleGraph()
 * 
 *     site_adder = None             # <<<<<<<<<<<<<<
 *     if sites:
 *         site_adder = SiteAdder(sites)
 */
  __Pyx_INCREF(Py_None);
  __pyx_v_site_adder = Py_None;

  /* "dysgu/graph.pyx":1281
 * 
 *     site_adder = None
 *     if sites:             # <<<<<<<<<<<<<<
 *         site_adder = SiteAdder(sites)
 * 
 */
  __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_v_sites); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 1281, __pyx_L1_error)
  if (__pyx_t_9) {

    /* "dysgu/graph.pyx":1282
 *     site_adder = None
 *     if sites:
 *         site_adder = SiteAdder(sites)             # <<<<<<<<<<<<<<
 * 
 *     # last_site_index = add_sites(G, pe_scope, node_to_name, sites)
 */
    __Pyx_GetModuleGlobalName(__pyx_t_7, __pyx_n_s_SiteAdder); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1282, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_4 = NULL;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_7))) {
      __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_7);
      if (likely(__pyx_t_4)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
        __Pyx_INCREF(__pyx_t_4);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_7, function);
      }
    }
    __pyx_t_6 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_7, __pyx_t_4, __pyx_v_sites) : __Pyx_PyObject_CallOneArg(__pyx_t_7, __pyx_v_sites);
    __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
    if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1282, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_DECREF_SET(__pyx_v_site_adder, __pyx_t_6);
    __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":1281
 * 
 *     site_adder = None
 *     if sites:             # <<<<<<<<<<<<<<
 *         site_adder = SiteAdder(sites)
 * 
 */
  }

  /* "dysgu/graph.pyx":1286
 *     # last_site_index = add_sites(G, pe_scope, node_to_name, sites)
 * 
 *     overlap_regions = genome_scanner.overlap_regions  # Get overlapper, intersect reads with intervals             # <<<<<<<<<<<<<<
 *     gettid = infile.gettid
 * 
 */
  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_genome_scanner, __pyx_n_s_overlap_regions); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1286, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_v_overlap_regions = __pyx_t_6;
  __pyx_t_6 = 0;

  /* "dysgu/graph.pyx":1287
 * 
 *     overlap_regions = genome_scanner.overlap_regions  # Get overlapper, intersect reads with intervals
 *     gettid = infile.gettid             # <<<<<<<<<<<<<<
 * 
 *     cdef long tell
 */
  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_infile, __pyx_n_s_gettid); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1287, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __pyx_v_gettid = __pyx_t_6;
  __pyx_t_6 = 0;

  /* "dysgu/graph.pyx":1306
 *     cdef CigarEvent v
 * 
 *     for chunk in genome_scanner.iter_genome():             # <<<<<<<<<<<<<<
 * 
 *         for r, tell in chunk:
 */
  __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_genome_scanner, __pyx_n_s_iter_genome); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1306, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __pyx_t_4 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_7))) {
    __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_7);
    if (likely(__pyx_t_4)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
      __Pyx_INCREF(__pyx_t_4);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_7, function);
    }
  }
  __pyx_t_6 = (__pyx_t_4) ? __Pyx_PyObject_CallOneArg(__pyx_t_7, __pyx_t_4) : __Pyx_PyObject_CallNoArg(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1306, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
  if (likely(PyList_CheckExact(__pyx_t_6)) || PyTuple_CheckExact(__pyx_t_6)) {
    __pyx_t_7 = __pyx_t_6; __Pyx_INCREF(__pyx_t_7); __pyx_t_10 = 0;
    __pyx_t_11 = NULL;
  } else {
    __pyx_t_10 = -1; __pyx_t_7 = PyObject_GetIter(__pyx_t_6); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1306, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_11 = Py_TYPE(__pyx_t_7)->tp_iternext; if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 1306, __pyx_L1_error)
  }
  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  for (;;) {
    if (likely(!__pyx_t_11)) {
      if (likely(PyList_CheckExact(__pyx_t_7))) {
        if (__pyx_t_10 >= PyList_GET_SIZE(__pyx_t_7)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_6 = PyList_GET_ITEM(__pyx_t_7, __pyx_t_10); __Pyx_INCREF(__pyx_t_6); __pyx_t_10++; if (unlikely(0 < 0)) __PYX_ERR(1, 1306, __pyx_L1_error)
        #else
        __pyx_t_6 = PySequence_ITEM(__pyx_t_7, __pyx_t_10); __pyx_t_10++; if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1306, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_6);
        #endif
      } else {
        if (__pyx_t_10 >= PyTuple_GET_SIZE(__pyx_t_7)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_7, __pyx_t_10); __Pyx_INCREF(__pyx_t_6); __pyx_t_10++; if (unlikely(0 < 0)) __PYX_ERR(1, 1306, __pyx_L1_error)
        #else
        __pyx_t_6 = PySequence_ITEM(__pyx_t_7, __pyx_t_10); __pyx_t_10++; if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1306, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_6);
        #endif
      }
    } else {
      __pyx_t_6 = __pyx_t_11(__pyx_t_7);
      if (unlikely(!__pyx_t_6)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 1306, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_6);
    }
    __Pyx_XDECREF_SET(__pyx_v_chunk, __pyx_t_6);
    __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":1308
 *     for chunk in genome_scanner.iter_genome():
 * 
 *         for r, tell in chunk:             # <<<<<<<<<<<<<<
 * 
 *             if r.mapq < mapq_thresh:
 */
    if (likely(PyList_CheckExact(__pyx_v_chunk)) || PyTuple_CheckExact(__pyx_v_chunk)) {
      __pyx_t_6 = __pyx_v_chunk; __Pyx_INCREF(__pyx_t_6); __pyx_t_12 = 0;
      __pyx_t_13 = NULL;
    } else {
      __pyx_t_12 = -1; __pyx_t_6 = PyObject_GetIter(__pyx_v_chunk); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1308, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_13 = Py_TYPE(__pyx_t_6)->tp_iternext; if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1308, __pyx_L1_error)
    }
    for (;;) {
      if (likely(!__pyx_t_13)) {
        if (likely(PyList_CheckExact(__pyx_t_6))) {
          if (__pyx_t_12 >= PyList_GET_SIZE(__pyx_t_6)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_4 = PyList_GET_ITEM(__pyx_t_6, __pyx_t_12); __Pyx_INCREF(__pyx_t_4); __pyx_t_12++; if (unlikely(0 < 0)) __PYX_ERR(1, 1308, __pyx_L1_error)
          #else
          __pyx_t_4 = PySequence_ITEM(__pyx_t_6, __pyx_t_12); __pyx_t_12++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1308, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_4);
          #endif
        } else {
          if (__pyx_t_12 >= PyTuple_GET_SIZE(__pyx_t_6)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_6, __pyx_t_12); __Pyx_INCREF(__pyx_t_4); __pyx_t_12++; if (unlikely(0 < 0)) __PYX_ERR(1, 1308, __pyx_L1_error)
          #else
          __pyx_t_4 = PySequence_ITEM(__pyx_t_6, __pyx_t_12); __pyx_t_12++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1308, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_4);
          #endif
        }
      } else {
        __pyx_t_4 = __pyx_t_13(__pyx_t_6);
        if (unlikely(!__pyx_t_4)) {
          PyObject* exc_type = PyErr_Occurred();
          if (exc_type) {
            if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
            else __PYX_ERR(1, 1308, __pyx_L1_error)
          }
          break;
        }
        __Pyx_GOTREF(__pyx_t_4);
      }
      if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) {
        PyObject* sequence = __pyx_t_4;
        Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
        if (unlikely(size != 2)) {
          if (size > 2) __Pyx_RaiseTooManyValuesError(2);
          else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
          __PYX_ERR(1, 1308, __pyx_L1_error)
        }
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        if (likely(PyTuple_CheckExact(sequence))) {
          __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0); 
          __pyx_t_5 = PyTuple_GET_ITEM(sequence, 1); 
        } else {
          __pyx_t_2 = PyList_GET_ITEM(sequence, 0); 
          __pyx_t_5 = PyList_GET_ITEM(sequence, 1); 
        }
        __Pyx_INCREF(__pyx_t_2);
        __Pyx_INCREF(__pyx_t_5);
        #else
        __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1308, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_2);
        __pyx_t_5 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1308, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
        __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      } else {
        Py_ssize_t index = -1;
        __pyx_t_1 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1308, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
        __pyx_t_14 = Py_TYPE(__pyx_t_1)->tp_iternext;
        index = 0; __pyx_t_2 = __pyx_t_14(__pyx_t_1); if (unlikely(!__pyx_t_2)) goto __pyx_L8_unpacking_failed;
        __Pyx_GOTREF(__pyx_t_2);
        index = 1; __pyx_t_5 = __pyx_t_14(__pyx_t_1); if (unlikely(!__pyx_t_5)) goto __pyx_L8_unpacking_failed;
        __Pyx_GOTREF(__pyx_t_5);
        if (__Pyx_IternextUnpackEndCheck(__pyx_t_14(__pyx_t_1), 2) < 0) __PYX_ERR(1, 1308, __pyx_L1_error)
        __pyx_t_14 = NULL;
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
        goto __pyx_L9_unpacking_done;
        __pyx_L8_unpacking_failed:;
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
        __pyx_t_14 = NULL;
        if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
        __PYX_ERR(1, 1308, __pyx_L1_error)
        __pyx_L9_unpacking_done:;
      }
      __pyx_t_15 = __Pyx_PyInt_As_long(__pyx_t_5); if (unlikely((__pyx_t_15 == (long)-1) && PyErr_Occurred())) __PYX_ERR(1, 1308, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __Pyx_XDECREF_SET(__pyx_v_r, __pyx_t_2);
      __pyx_t_2 = 0;
      __pyx_v_tell = __pyx_t_15;

      /* "dysgu/graph.pyx":1310
 *         for r, tell in chunk:
 * 
 *             if r.mapq < mapq_thresh:             # <<<<<<<<<<<<<<
 *                 continue
 * 
 */
      __pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_mapq); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1310, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_mapq_thresh); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1310, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_2 = PyObject_RichCompare(__pyx_t_4, __pyx_t_5, Py_LT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1310, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 1310, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
      if (__pyx_t_9) {

        /* "dysgu/graph.pyx":1311
 * 
 *             if r.mapq < mapq_thresh:
 *                 continue             # <<<<<<<<<<<<<<
 * 
 *             pos2 = -1
 */
        goto __pyx_L6_continue;

        /* "dysgu/graph.pyx":1310
 *         for r, tell in chunk:
 * 
 *             if r.mapq < mapq_thresh:             # <<<<<<<<<<<<<<
 *                 continue
 * 
 */
      }

      /* "dysgu/graph.pyx":1313
 *                 continue
 * 
 *             pos2 = -1             # <<<<<<<<<<<<<<
 *             event_pos = r.pos
 *             added = False
 */
      __pyx_v_pos2 = -1;

      /* "dysgu/graph.pyx":1314
 * 
 *             pos2 = -1
 *             event_pos = r.pos             # <<<<<<<<<<<<<<
 *             added = False
 *             clipped = 0
 */
      __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_pos); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1314, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __pyx_t_8 = __Pyx_PyInt_As_int(__pyx_t_2); if (unlikely((__pyx_t_8 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1314, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
      __pyx_v_event_pos = __pyx_t_8;

      /* "dysgu/graph.pyx":1315
 *             pos2 = -1
 *             event_pos = r.pos
 *             added = False             # <<<<<<<<<<<<<<
 *             clipped = 0
 * 
 */
      __pyx_v_added = 0;

      /* "dysgu/graph.pyx":1316
 *             event_pos = r.pos
 *             added = False
 *             clipped = 0             # <<<<<<<<<<<<<<
 * 
 *             events_to_add.clear()
 */
      __pyx_v_clipped = 0;

      /* "dysgu/graph.pyx":1318
 *             clipped = 0
 * 
 *             events_to_add.clear()             # <<<<<<<<<<<<<<
 * 
 *             if len(r.cigartuples) > 1:
 */
      __pyx_v_events_to_add.clear();

      /* "dysgu/graph.pyx":1320
 *             events_to_add.clear()
 * 
 *             if len(r.cigartuples) > 1:             # <<<<<<<<<<<<<<
 * 
 *                 if r.has_tag("SA"):
 */
      __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1320, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __pyx_t_16 = PyObject_Length(__pyx_t_2); if (unlikely(__pyx_t_16 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1320, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
      __pyx_t_9 = ((__pyx_t_16 > 1) != 0);
      if (__pyx_t_9) {

        /* "dysgu/graph.pyx":1322
 *             if len(r.cigartuples) > 1:
 * 
 *                 if r.has_tag("SA"):             # <<<<<<<<<<<<<<
 * 
 *                     # Set cigar-index to -1 means it is unset, will be determined during SA parsing
 */
        __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_has_tag); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1322, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        __pyx_t_4 = NULL;
        if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
          __pyx_t_4 = PyMethod_GET_SELF(__pyx_t_5);
          if (likely(__pyx_t_4)) {
            PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
            __Pyx_INCREF(__pyx_t_4);
            __Pyx_INCREF(function);
            __Pyx_DECREF_SET(__pyx_t_5, function);
          }
        }
        __pyx_t_2 = (__pyx_t_4) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_4, __pyx_n_u_SA) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_n_u_SA);
        __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
        if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1322, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_2);
        __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 1322, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
        if (__pyx_t_9) {

          /* "dysgu/graph.pyx":1325
 * 
 *                     # Set cigar-index to -1 means it is unset, will be determined during SA parsing
 *                     cigar_index = -1             # <<<<<<<<<<<<<<
 *                     process_alignment(G, r, clip_l, max_dist, gettid,
 *                                       overlap_regions, clustering_dist, pe_scope,
 */
          __pyx_v_cigar_index = -1;

          /* "dysgu/graph.pyx":1326
 *                     # Set cigar-index to -1 means it is unset, will be determined during SA parsing
 *                     cigar_index = -1
 *                     process_alignment(G, r, clip_l, max_dist, gettid,             # <<<<<<<<<<<<<<
 *                                       overlap_regions, clustering_dist, pe_scope,
 *                                       cigar_index, event_pos, paired_end, tell, genome_scanner,
 */
          if (!(likely(((__pyx_v_r) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_r, __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment))))) __PYX_ERR(1, 1326, __pyx_L1_error)

          /* "dysgu/graph.pyx":1330
 *                                       cigar_index, event_pos, paired_end, tell, genome_scanner,
 *                                       template_edges, node_to_name, pos2, mapq_thresh, clip_scope, ReadEnum_t.SPLIT,
 *                                       bad_clip_counter, mm_only, site_adder, 0, trust_ins_len)             # <<<<<<<<<<<<<<
 *                     added = True
 * 
 */
          __pyx_f_5dysgu_5graph_process_alignment(__pyx_v_G, ((struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *)__pyx_v_r), __pyx_v_clip_l, __pyx_v_max_dist, __pyx_v_gettid, __pyx_v_overlap_regions, __pyx_v_clustering_dist, __pyx_v_pe_scope, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_paired_end, __pyx_v_tell, __pyx_v_genome_scanner, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_pos2, __pyx_v_mapq_thresh, __pyx_v_clip_scope, __pyx_e_5dysgu_5graph_SPLIT, __pyx_v_bad_clip_counter, __pyx_v_mm_only, __pyx_v_site_adder, 0, __pyx_v_trust_ins_len);

          /* "dysgu/graph.pyx":1331
 *                                       template_edges, node_to_name, pos2, mapq_thresh, clip_scope, ReadEnum_t.SPLIT,
 *                                       bad_clip_counter, mm_only, site_adder, 0, trust_ins_len)
 *                     added = True             # <<<<<<<<<<<<<<
 * 
 *                 for cigar_index, (opp, length) in enumerate(r.cigartuples):
 */
          __pyx_v_added = 1;

          /* "dysgu/graph.pyx":1322
 *             if len(r.cigartuples) > 1:
 * 
 *                 if r.has_tag("SA"):             # <<<<<<<<<<<<<<
 * 
 *                     # Set cigar-index to -1 means it is unset, will be determined during SA parsing
 */
        }

        /* "dysgu/graph.pyx":1333
 *                     added = True
 * 
 *                 for cigar_index, (opp, length) in enumerate(r.cigartuples):             # <<<<<<<<<<<<<<
 * 
 *                     if opp == 1:
 */
        __pyx_t_8 = 0;
        __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_cigartuples); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1333, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_2);
        if (likely(PyList_CheckExact(__pyx_t_2)) || PyTuple_CheckExact(__pyx_t_2)) {
          __pyx_t_5 = __pyx_t_2; __Pyx_INCREF(__pyx_t_5); __pyx_t_16 = 0;
          __pyx_t_17 = NULL;
        } else {
          __pyx_t_16 = -1; __pyx_t_5 = PyObject_GetIter(__pyx_t_2); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1333, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_17 = Py_TYPE(__pyx_t_5)->tp_iternext; if (unlikely(!__pyx_t_17)) __PYX_ERR(1, 1333, __pyx_L1_error)
        }
        __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
        for (;;) {
          if (likely(!__pyx_t_17)) {
            if (likely(PyList_CheckExact(__pyx_t_5))) {
              if (__pyx_t_16 >= PyList_GET_SIZE(__pyx_t_5)) break;
              #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
              __pyx_t_2 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_16); __Pyx_INCREF(__pyx_t_2); __pyx_t_16++; if (unlikely(0 < 0)) __PYX_ERR(1, 1333, __pyx_L1_error)
              #else
              __pyx_t_2 = PySequence_ITEM(__pyx_t_5, __pyx_t_16); __pyx_t_16++; if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1333, __pyx_L1_error)
              __Pyx_GOTREF(__pyx_t_2);
              #endif
            } else {
              if (__pyx_t_16 >= PyTuple_GET_SIZE(__pyx_t_5)) break;
              #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
              __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_16); __Pyx_INCREF(__pyx_t_2); __pyx_t_16++; if (unlikely(0 < 0)) __PYX_ERR(1, 1333, __pyx_L1_error)
              #else
              __pyx_t_2 = PySequence_ITEM(__pyx_t_5, __pyx_t_16); __pyx_t_16++; if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1333, __pyx_L1_error)
              __Pyx_GOTREF(__pyx_t_2);
              #endif
            }
          } else {
            __pyx_t_2 = __pyx_t_17(__pyx_t_5);
            if (unlikely(!__pyx_t_2)) {
              PyObject* exc_type = PyErr_Occurred();
              if (exc_type) {
                if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
                else __PYX_ERR(1, 1333, __pyx_L1_error)
              }
              break;
            }
            __Pyx_GOTREF(__pyx_t_2);
          }
          if ((likely(PyTuple_CheckExact(__pyx_t_2))) || (PyList_CheckExact(__pyx_t_2))) {
            PyObject* sequence = __pyx_t_2;
            Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
            if (unlikely(size != 2)) {
              if (size > 2) __Pyx_RaiseTooManyValuesError(2);
              else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
              __PYX_ERR(1, 1333, __pyx_L1_error)
            }
            #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
            if (likely(PyTuple_CheckExact(sequence))) {
              __pyx_t_4 = PyTuple_GET_ITEM(sequence, 0); 
              __pyx_t_1 = PyTuple_GET_ITEM(sequence, 1); 
            } else {
              __pyx_t_4 = PyList_GET_ITEM(sequence, 0); 
              __pyx_t_1 = PyList_GET_ITEM(sequence, 1); 
            }
            __Pyx_INCREF(__pyx_t_4);
            __Pyx_INCREF(__pyx_t_1);
            #else
            __pyx_t_4 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1333, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_4);
            __pyx_t_1 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1333, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_1);
            #endif
            __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
          } else {
            Py_ssize_t index = -1;
            __pyx_t_3 = PyObject_GetIter(__pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1333, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_3);
            __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
            __pyx_t_14 = Py_TYPE(__pyx_t_3)->tp_iternext;
            index = 0; __pyx_t_4 = __pyx_t_14(__pyx_t_3); if (unlikely(!__pyx_t_4)) goto __pyx_L15_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_4);
            index = 1; __pyx_t_1 = __pyx_t_14(__pyx_t_3); if (unlikely(!__pyx_t_1)) goto __pyx_L15_unpacking_failed;
            __Pyx_GOTREF(__pyx_t_1);
            if (__Pyx_IternextUnpackEndCheck(__pyx_t_14(__pyx_t_3), 2) < 0) __PYX_ERR(1, 1333, __pyx_L1_error)
            __pyx_t_14 = NULL;
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
            goto __pyx_L16_unpacking_done;
            __pyx_L15_unpacking_failed:;
            __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
            __pyx_t_14 = NULL;
            if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
            __PYX_ERR(1, 1333, __pyx_L1_error)
            __pyx_L16_unpacking_done:;
          }
          __pyx_t_18 = __Pyx_PyInt_As_int(__pyx_t_4); if (unlikely((__pyx_t_18 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1333, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
          __pyx_t_19 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_19 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1333, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_v_opp = __pyx_t_18;
          __pyx_v_length = __pyx_t_19;
          __pyx_v_cigar_index = __pyx_t_8;
          __pyx_t_8 = (__pyx_t_8 + 1);

          /* "dysgu/graph.pyx":1335
 *                 for cigar_index, (opp, length) in enumerate(r.cigartuples):
 * 
 *                     if opp == 1:             # <<<<<<<<<<<<<<
 *                         if length >= min_sv_size:
 *                             # Insertion type
 */
          switch (__pyx_v_opp) {
            case 1:

            /* "dysgu/graph.pyx":1336
 * 
 *                     if opp == 1:
 *                         if length >= min_sv_size:             # <<<<<<<<<<<<<<
 *                             # Insertion type
 *                             pos2 = event_pos + length
 */
            __pyx_t_9 = ((__pyx_v_length >= __pyx_v_min_sv_size) != 0);
            if (__pyx_t_9) {

              /* "dysgu/graph.pyx":1338
 *                         if length >= min_sv_size:
 *                             # Insertion type
 *                             pos2 = event_pos + length             # <<<<<<<<<<<<<<
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.INSERTION))
 *                             added = True
 */
              __pyx_v_pos2 = (__pyx_v_event_pos + __pyx_v_length);

              /* "dysgu/graph.pyx":1339
 *                             # Insertion type
 *                             pos2 = event_pos + length
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.INSERTION))             # <<<<<<<<<<<<<<
 *                             added = True
 * 
 */
              try {
                __pyx_v_events_to_add.push_back(__pyx_f_5dysgu_5graph_make_cigar_event(__pyx_v_opp, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_pos2, __pyx_v_length, __pyx_e_5dysgu_5graph_INSERTION));
              } catch(...) {
                __Pyx_CppExn2PyErr();
                __PYX_ERR(1, 1339, __pyx_L1_error)
              }

              /* "dysgu/graph.pyx":1340
 *                             pos2 = event_pos + length
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.INSERTION))
 *                             added = True             # <<<<<<<<<<<<<<
 * 
 *                     elif opp == 2:
 */
              __pyx_v_added = 1;

              /* "dysgu/graph.pyx":1336
 * 
 *                     if opp == 1:
 *                         if length >= min_sv_size:             # <<<<<<<<<<<<<<
 *                             # Insertion type
 *                             pos2 = event_pos + length
 */
            }

            /* "dysgu/graph.pyx":1335
 *                 for cigar_index, (opp, length) in enumerate(r.cigartuples):
 * 
 *                     if opp == 1:             # <<<<<<<<<<<<<<
 *                         if length >= min_sv_size:
 *                             # Insertion type
 */
            break;
            case 2:

            /* "dysgu/graph.pyx":1343
 * 
 *                     elif opp == 2:
 *                         if length >= min_sv_size:  # elif!             # <<<<<<<<<<<<<<
 *                             pos2 = event_pos + length
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.DELETION))
 */
            __pyx_t_9 = ((__pyx_v_length >= __pyx_v_min_sv_size) != 0);
            if (__pyx_t_9) {

              /* "dysgu/graph.pyx":1344
 *                     elif opp == 2:
 *                         if length >= min_sv_size:  # elif!
 *                             pos2 = event_pos + length             # <<<<<<<<<<<<<<
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.DELETION))
 *                             added = True
 */
              __pyx_v_pos2 = (__pyx_v_event_pos + __pyx_v_length);

              /* "dysgu/graph.pyx":1345
 *                         if length >= min_sv_size:  # elif!
 *                             pos2 = event_pos + length
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.DELETION))             # <<<<<<<<<<<<<<
 *                             added = True
 * 
 */
              try {
                __pyx_v_events_to_add.push_back(__pyx_f_5dysgu_5graph_make_cigar_event(__pyx_v_opp, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_pos2, __pyx_v_length, __pyx_e_5dysgu_5graph_DELETION));
              } catch(...) {
                __Pyx_CppExn2PyErr();
                __PYX_ERR(1, 1345, __pyx_L1_error)
              }

              /* "dysgu/graph.pyx":1346
 *                             pos2 = event_pos + length
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.DELETION))
 *                             added = True             # <<<<<<<<<<<<<<
 * 
 *                         event_pos += length
 */
              __pyx_v_added = 1;

              /* "dysgu/graph.pyx":1343
 * 
 *                     elif opp == 2:
 *                         if length >= min_sv_size:  # elif!             # <<<<<<<<<<<<<<
 *                             pos2 = event_pos + length
 *                             events_to_add.push_back(make_cigar_event(opp, cigar_index, event_pos, pos2, length, ReadEnum_t.DELETION))
 */
            }

            /* "dysgu/graph.pyx":1348
 *                             added = True
 * 
 *                         event_pos += length             # <<<<<<<<<<<<<<
 * 
 *                     else:
 */
            __pyx_v_event_pos = (__pyx_v_event_pos + __pyx_v_length);

            /* "dysgu/graph.pyx":1342
 *                             added = True
 * 
 *                     elif opp == 2:             # <<<<<<<<<<<<<<
 *                         if length >= min_sv_size:  # elif!
 *                             pos2 = event_pos + length
 */
            break;
            default:

            /* "dysgu/graph.pyx":1351
 * 
 *                     else:
 *                         if opp != 4 and opp != 5:             # <<<<<<<<<<<<<<
 *                             event_pos += length
 *                         elif opp == 4 and length >= clip_l:
 */
            switch (__pyx_v_opp) {
              case 4:
              case 5:
              __pyx_t_9 = 0;
              break;
              default:
              __pyx_t_9 = 1;
              break;
            }
            if (__pyx_t_9) {

              /* "dysgu/graph.pyx":1352
 *                     else:
 *                         if opp != 4 and opp != 5:
 *                             event_pos += length             # <<<<<<<<<<<<<<
 *                         elif opp == 4 and length >= clip_l:
 *                             clipped = 1
 */
              __pyx_v_event_pos = (__pyx_v_event_pos + __pyx_v_length);

              /* "dysgu/graph.pyx":1351
 * 
 *                     else:
 *                         if opp != 4 and opp != 5:             # <<<<<<<<<<<<<<
 *                             event_pos += length
 *                         elif opp == 4 and length >= clip_l:
 */
              goto __pyx_L19;
            }

            /* "dysgu/graph.pyx":1353
 *                         if opp != 4 and opp != 5:
 *                             event_pos += length
 *                         elif opp == 4 and length >= clip_l:             # <<<<<<<<<<<<<<
 *                             clipped = 1
 * 
 */
            __pyx_t_20 = ((__pyx_v_opp == 4) != 0);
            if (__pyx_t_20) {
            } else {
              __pyx_t_9 = __pyx_t_20;
              goto __pyx_L20_bool_binop_done;
            }
            __pyx_t_20 = ((__pyx_v_length >= __pyx_v_clip_l) != 0);
            __pyx_t_9 = __pyx_t_20;
            __pyx_L20_bool_binop_done:;
            if (__pyx_t_9) {

              /* "dysgu/graph.pyx":1354
 *                             event_pos += length
 *                         elif opp == 4 and length >= clip_l:
 *                             clipped = 1             # <<<<<<<<<<<<<<
 * 
 *             if not added and contigs:
 */
              __pyx_v_clipped = 1;

              /* "dysgu/graph.pyx":1353
 *                         if opp != 4 and opp != 5:
 *                             event_pos += length
 *                         elif opp == 4 and length >= clip_l:             # <<<<<<<<<<<<<<
 *                             clipped = 1
 * 
 */
            }
            __pyx_L19:;
            break;
          }

          /* "dysgu/graph.pyx":1333
 *                     added = True
 * 
 *                 for cigar_index, (opp, length) in enumerate(r.cigartuples):             # <<<<<<<<<<<<<<
 * 
 *                     if opp == 1:
 */
        }
        __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

        /* "dysgu/graph.pyx":1320
 *             events_to_add.clear()
 * 
 *             if len(r.cigartuples) > 1:             # <<<<<<<<<<<<<<
 * 
 *                 if r.has_tag("SA"):
 */
      }

      /* "dysgu/graph.pyx":1356
 *                             clipped = 1
 * 
 *             if not added and contigs:             # <<<<<<<<<<<<<<
 *                 # Whole alignment will be used, try infer position from soft-clip
 *                 cigar_index = -1
 */
      __pyx_t_20 = ((!(__pyx_v_added != 0)) != 0);
      if (__pyx_t_20) {
      } else {
        __pyx_t_9 = __pyx_t_20;
        goto __pyx_L23_bool_binop_done;
      }
      __pyx_t_20 = (__pyx_v_contigs != 0);
      __pyx_t_9 = __pyx_t_20;
      __pyx_L23_bool_binop_done:;
      if (__pyx_t_9) {

        /* "dysgu/graph.pyx":1358
 *             if not added and contigs:
 *                 # Whole alignment will be used, try infer position from soft-clip
 *                 cigar_index = -1             # <<<<<<<<<<<<<<
 *                 pos2 = -1
 *                 left_clip_size, right_clip_size = clip_sizes_hard(r)  # soft and hard-clips
 */
        __pyx_v_cigar_index = -1;

        /* "dysgu/graph.pyx":1359
 *                 # Whole alignment will be used, try infer position from soft-clip
 *                 cigar_index = -1
 *                 pos2 = -1             # <<<<<<<<<<<<<<
 *                 left_clip_size, right_clip_size = clip_sizes_hard(r)  # soft and hard-clips
 *                 if r.flag & 8 and clipped:
 */
        __pyx_v_pos2 = -1;

        /* "dysgu/graph.pyx":1360
 *                 cigar_index = -1
 *                 pos2 = -1
 *                 left_clip_size, right_clip_size = clip_sizes_hard(r)  # soft and hard-clips             # <<<<<<<<<<<<<<
 *                 if r.flag & 8 and clipped:
 *                     # skip if both ends are clipped, usually means its a chunk of badly mapped sequence
 */
        __pyx_t_5 = __pyx_f_5dysgu_13map_set_utils_clip_sizes_hard(__pyx_v_r); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1360, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        if (likely(__pyx_t_5 != Py_None)) {
          PyObject* sequence = __pyx_t_5;
          Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
          if (unlikely(size != 2)) {
            if (size > 2) __Pyx_RaiseTooManyValuesError(2);
            else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
            __PYX_ERR(1, 1360, __pyx_L1_error)
          }
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0); 
          __pyx_t_1 = PyTuple_GET_ITEM(sequence, 1); 
          __Pyx_INCREF(__pyx_t_2);
          __Pyx_INCREF(__pyx_t_1);
          #else
          __pyx_t_2 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1360, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_2);
          __pyx_t_1 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1360, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          #endif
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        } else {
          __Pyx_RaiseNoneNotIterableError(); __PYX_ERR(1, 1360, __pyx_L1_error)
        }
        __Pyx_XDECREF_SET(__pyx_v_left_clip_size, __pyx_t_2);
        __pyx_t_2 = 0;
        __Pyx_XDECREF_SET(__pyx_v_right_clip_size, __pyx_t_1);
        __pyx_t_1 = 0;

        /* "dysgu/graph.pyx":1361
 *                 pos2 = -1
 *                 left_clip_size, right_clip_size = clip_sizes_hard(r)  # soft and hard-clips
 *                 if r.flag & 8 and clipped:             # <<<<<<<<<<<<<<
 *                     # skip if both ends are clipped, usually means its a chunk of badly mapped sequence
 *                     if not (left_clip_size and right_clip_size) and good_quality_clip(r, 20):
 */
        __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_flag); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1361, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        __pyx_t_1 = __Pyx_PyInt_AndObjC(__pyx_t_5, __pyx_int_8, 8, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1361, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        __pyx_t_20 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_20 < 0)) __PYX_ERR(1, 1361, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
        if (__pyx_t_20) {
        } else {
          __pyx_t_9 = __pyx_t_20;
          goto __pyx_L26_bool_binop_done;
        }
        __pyx_t_20 = (__pyx_v_clipped != 0);
        __pyx_t_9 = __pyx_t_20;
        __pyx_L26_bool_binop_done:;
        if (__pyx_t_9) {

          /* "dysgu/graph.pyx":1363
 *                 if r.flag & 8 and clipped:
 *                     # skip if both ends are clipped, usually means its a chunk of badly mapped sequence
 *                     if not (left_clip_size and right_clip_size) and good_quality_clip(r, 20):             # <<<<<<<<<<<<<<
 *                         # Mate is unmapped, insertion type. Only add if soft-clip is available
 *                         process_alignment(G, r, clip_l, max_dist, gettid,
 */
          __pyx_t_21 = __Pyx_PyObject_IsTrue(__pyx_v_left_clip_size); if (unlikely(__pyx_t_21 < 0)) __PYX_ERR(1, 1363, __pyx_L1_error)
          if (__pyx_t_21) {
          } else {
            __pyx_t_20 = __pyx_t_21;
            goto __pyx_L31_bool_binop_done;
          }
          __pyx_t_21 = __Pyx_PyObject_IsTrue(__pyx_v_right_clip_size); if (unlikely(__pyx_t_21 < 0)) __PYX_ERR(1, 1363, __pyx_L1_error)
          __pyx_t_20 = __pyx_t_21;
          __pyx_L31_bool_binop_done:;
          __pyx_t_21 = ((!__pyx_t_20) != 0);
          if (__pyx_t_21) {
          } else {
            __pyx_t_9 = __pyx_t_21;
            goto __pyx_L29_bool_binop_done;
          }
          if (!(likely(((__pyx_v_r) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_r, __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment))))) __PYX_ERR(1, 1363, __pyx_L1_error)
          __pyx_t_21 = (__pyx_f_5dysgu_5graph_good_quality_clip(((struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *)__pyx_v_r), 20) != 0);
          __pyx_t_9 = __pyx_t_21;
          __pyx_L29_bool_binop_done:;
          if (__pyx_t_9) {

            /* "dysgu/graph.pyx":1365
 *                     if not (left_clip_size and right_clip_size) and good_quality_clip(r, 20):
 *                         # Mate is unmapped, insertion type. Only add if soft-clip is available
 *                         process_alignment(G, r, clip_l, max_dist, gettid,             # <<<<<<<<<<<<<<
 *                                           overlap_regions, clustering_dist, pe_scope,
 *                                           cigar_index, event_pos, paired_end, tell, genome_scanner,
 */
            if (!(likely(((__pyx_v_r) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_r, __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment))))) __PYX_ERR(1, 1365, __pyx_L1_error)

            /* "dysgu/graph.pyx":1370
 *                                           template_edges, node_to_name,
 *                                           pos2, mapq_thresh, clip_scope, ReadEnum_t.BREAKEND, bad_clip_counter,
 *                                           mm_only, site_adder, 0, trust_ins_len)             # <<<<<<<<<<<<<<
 *                 else:
 *                     # Use whole read, could be normal or discordant
 */
            __pyx_f_5dysgu_5graph_process_alignment(__pyx_v_G, ((struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *)__pyx_v_r), __pyx_v_clip_l, __pyx_v_max_dist, __pyx_v_gettid, __pyx_v_overlap_regions, __pyx_v_clustering_dist, __pyx_v_pe_scope, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_paired_end, __pyx_v_tell, __pyx_v_genome_scanner, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_pos2, __pyx_v_mapq_thresh, __pyx_v_clip_scope, __pyx_e_5dysgu_5graph_BREAKEND, __pyx_v_bad_clip_counter, __pyx_v_mm_only, __pyx_v_site_adder, 0, __pyx_v_trust_ins_len);

            /* "dysgu/graph.pyx":1363
 *                 if r.flag & 8 and clipped:
 *                     # skip if both ends are clipped, usually means its a chunk of badly mapped sequence
 *                     if not (left_clip_size and right_clip_size) and good_quality_clip(r, 20):             # <<<<<<<<<<<<<<
 *                         # Mate is unmapped, insertion type. Only add if soft-clip is available
 *                         process_alignment(G, r, clip_l, max_dist, gettid,
 */
          }

          /* "dysgu/graph.pyx":1361
 *                 pos2 = -1
 *                 left_clip_size, right_clip_size = clip_sizes_hard(r)  # soft and hard-clips
 *                 if r.flag & 8 and clipped:             # <<<<<<<<<<<<<<
 *                     # skip if both ends are clipped, usually means its a chunk of badly mapped sequence
 *                     if not (left_clip_size and right_clip_size) and good_quality_clip(r, 20):
 */
          goto __pyx_L25;
        }

        /* "dysgu/graph.pyx":1375
 *                     # r.flag & 2 and : this now overrides discordant flag
 *                     # if abs(r.tlen) < max_dist and r.rname == r.rnext:
 *                     if r.flag & 2 and abs(r.tlen) < max_dist and r.rname == r.rnext:             # <<<<<<<<<<<<<<
 *                         if not clipped:
 *                             continue
 */
        /*else*/ {
          __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_flag); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __pyx_t_5 = __Pyx_PyInt_AndObjC(__pyx_t_1, __pyx_int_2, 2, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_t_21 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely(__pyx_t_21 < 0)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          if (__pyx_t_21) {
          } else {
            __pyx_t_9 = __pyx_t_21;
            goto __pyx_L34_bool_binop_done;
          }
          __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_tlen); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_1 = __Pyx_PyNumber_Absolute(__pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_max_dist); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_2 = PyObject_RichCompare(__pyx_t_1, __pyx_t_5, Py_LT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_21 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_21 < 0)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
          if (__pyx_t_21) {
          } else {
            __pyx_t_9 = __pyx_t_21;
            goto __pyx_L34_bool_binop_done;
          }
          __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_rname); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_2);
          __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_rnext); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_1 = PyObject_RichCompare(__pyx_t_2, __pyx_t_5, Py_EQ); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __pyx_t_21 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_21 < 0)) __PYX_ERR(1, 1375, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_t_9 = __pyx_t_21;
          __pyx_L34_bool_binop_done:;
          if (__pyx_t_9) {

            /* "dysgu/graph.pyx":1376
 *                     # if abs(r.tlen) < max_dist and r.rname == r.rnext:
 *                     if r.flag & 2 and abs(r.tlen) < max_dist and r.rname == r.rnext:
 *                         if not clipped:             # <<<<<<<<<<<<<<
 *                             continue
 *                         read_enum = ReadEnum_t.BREAKEND
 */
            __pyx_t_9 = ((!(__pyx_v_clipped != 0)) != 0);
            if (__pyx_t_9) {

              /* "dysgu/graph.pyx":1377
 *                     if r.flag & 2 and abs(r.tlen) < max_dist and r.rname == r.rnext:
 *                         if not clipped:
 *                             continue             # <<<<<<<<<<<<<<
 *                         read_enum = ReadEnum_t.BREAKEND
 *                     else:
 */
              goto __pyx_L6_continue;

              /* "dysgu/graph.pyx":1376
 *                     # if abs(r.tlen) < max_dist and r.rname == r.rnext:
 *                     if r.flag & 2 and abs(r.tlen) < max_dist and r.rname == r.rnext:
 *                         if not clipped:             # <<<<<<<<<<<<<<
 *                             continue
 *                         read_enum = ReadEnum_t.BREAKEND
 */
            }

            /* "dysgu/graph.pyx":1378
 *                         if not clipped:
 *                             continue
 *                         read_enum = ReadEnum_t.BREAKEND             # <<<<<<<<<<<<<<
 *                     else:
 *                         read_enum = ReadEnum_t.DISCORDANT
 */
            __pyx_v_read_enum = __pyx_e_5dysgu_5graph_BREAKEND;

            /* "dysgu/graph.pyx":1375
 *                     # r.flag & 2 and : this now overrides discordant flag
 *                     # if abs(r.tlen) < max_dist and r.rname == r.rnext:
 *                     if r.flag & 2 and abs(r.tlen) < max_dist and r.rname == r.rnext:             # <<<<<<<<<<<<<<
 *                         if not clipped:
 *                             continue
 */
            goto __pyx_L33;
          }

          /* "dysgu/graph.pyx":1380
 *                         read_enum = ReadEnum_t.BREAKEND
 *                     else:
 *                         read_enum = ReadEnum_t.DISCORDANT             # <<<<<<<<<<<<<<
 * 
 *                     if left_clip_size or right_clip_size:
 */
          /*else*/ {
            __pyx_v_read_enum = __pyx_e_5dysgu_5graph_DISCORDANT;
          }
          __pyx_L33:;

          /* "dysgu/graph.pyx":1382
 *                         read_enum = ReadEnum_t.DISCORDANT
 * 
 *                     if left_clip_size or right_clip_size:             # <<<<<<<<<<<<<<
 *                         if left_clip_size > right_clip_size:
 *                             event_pos = r.pos  # else reference_end is used
 */
          __pyx_t_21 = __Pyx_PyObject_IsTrue(__pyx_v_left_clip_size); if (unlikely(__pyx_t_21 < 0)) __PYX_ERR(1, 1382, __pyx_L1_error)
          if (!__pyx_t_21) {
          } else {
            __pyx_t_9 = __pyx_t_21;
            goto __pyx_L39_bool_binop_done;
          }
          __pyx_t_21 = __Pyx_PyObject_IsTrue(__pyx_v_right_clip_size); if (unlikely(__pyx_t_21 < 0)) __PYX_ERR(1, 1382, __pyx_L1_error)
          __pyx_t_9 = __pyx_t_21;
          __pyx_L39_bool_binop_done:;
          if (__pyx_t_9) {

            /* "dysgu/graph.pyx":1383
 * 
 *                     if left_clip_size or right_clip_size:
 *                         if left_clip_size > right_clip_size:             # <<<<<<<<<<<<<<
 *                             event_pos = r.pos  # else reference_end is used
 * 
 */
            __pyx_t_1 = PyObject_RichCompare(__pyx_v_left_clip_size, __pyx_v_right_clip_size, Py_GT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1383, __pyx_L1_error)
            __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 1383, __pyx_L1_error)
            __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
            if (__pyx_t_9) {

              /* "dysgu/graph.pyx":1384
 *                     if left_clip_size or right_clip_size:
 *                         if left_clip_size > right_clip_size:
 *                             event_pos = r.pos  # else reference_end is used             # <<<<<<<<<<<<<<
 * 
 *                     process_alignment(G, r, clip_l, max_dist, gettid,
 */
              __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_r, __pyx_n_s_pos); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1384, __pyx_L1_error)
              __Pyx_GOTREF(__pyx_t_1);
              __pyx_t_8 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_8 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1384, __pyx_L1_error)
              __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
              __pyx_v_event_pos = __pyx_t_8;

              /* "dysgu/graph.pyx":1383
 * 
 *                     if left_clip_size or right_clip_size:
 *                         if left_clip_size > right_clip_size:             # <<<<<<<<<<<<<<
 *                             event_pos = r.pos  # else reference_end is used
 * 
 */
            }

            /* "dysgu/graph.pyx":1382
 *                         read_enum = ReadEnum_t.DISCORDANT
 * 
 *                     if left_clip_size or right_clip_size:             # <<<<<<<<<<<<<<
 *                         if left_clip_size > right_clip_size:
 *                             event_pos = r.pos  # else reference_end is used
 */
          }

          /* "dysgu/graph.pyx":1386
 *                             event_pos = r.pos  # else reference_end is used
 * 
 *                     process_alignment(G, r, clip_l, max_dist, gettid,             # <<<<<<<<<<<<<<
 *                                       overlap_regions, clustering_dist, pe_scope,
 *                                       cigar_index, event_pos, paired_end, tell, genome_scanner,
 */
          if (!(likely(((__pyx_v_r) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_r, __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment))))) __PYX_ERR(1, 1386, __pyx_L1_error)

          /* "dysgu/graph.pyx":1391
 *                                       template_edges, node_to_name,
 *                                       pos2, mapq_thresh, clip_scope, read_enum, bad_clip_counter,
 *                                       mm_only, site_adder, 0, trust_ins_len)             # <<<<<<<<<<<<<<
 * 
 *             # process within-read events
 */
          __pyx_f_5dysgu_5graph_process_alignment(__pyx_v_G, ((struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *)__pyx_v_r), __pyx_v_clip_l, __pyx_v_max_dist, __pyx_v_gettid, __pyx_v_overlap_regions, __pyx_v_clustering_dist, __pyx_v_pe_scope, __pyx_v_cigar_index, __pyx_v_event_pos, __pyx_v_paired_end, __pyx_v_tell, __pyx_v_genome_scanner, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_pos2, __pyx_v_mapq_thresh, __pyx_v_clip_scope, __pyx_v_read_enum, __pyx_v_bad_clip_counter, __pyx_v_mm_only, __pyx_v_site_adder, 0, __pyx_v_trust_ins_len);
        }
        __pyx_L25:;

        /* "dysgu/graph.pyx":1356
 *                             clipped = 1
 * 
 *             if not added and contigs:             # <<<<<<<<<<<<<<
 *                 # Whole alignment will be used, try infer position from soft-clip
 *                 cigar_index = -1
 */
      }

      /* "dysgu/graph.pyx":1394
 * 
 *             # process within-read events
 *             if not events_to_add.empty():             # <<<<<<<<<<<<<<
 *                 itr_events = events_to_add.begin()
 * 
 */
      __pyx_t_9 = ((!(__pyx_v_events_to_add.empty() != 0)) != 0);
      if (__pyx_t_9) {

        /* "dysgu/graph.pyx":1395
 *             # process within-read events
 *             if not events_to_add.empty():
 *                 itr_events = events_to_add.begin()             # <<<<<<<<<<<<<<
 * 
 *                 while itr_events != events_to_add.end():
 */
        __pyx_v_itr_events = __pyx_v_events_to_add.begin();

        /* "dysgu/graph.pyx":1397
 *                 itr_events = events_to_add.begin()
 * 
 *                 while itr_events != events_to_add.end():             # <<<<<<<<<<<<<<
 *                     v = dereference(itr_events)
 *                     if v.cigar_skip:
 */
        while (1) {
          __pyx_t_9 = ((__pyx_v_itr_events != __pyx_v_events_to_add.end()) != 0);
          if (!__pyx_t_9) break;

          /* "dysgu/graph.pyx":1398
 * 
 *                 while itr_events != events_to_add.end():
 *                     v = dereference(itr_events)             # <<<<<<<<<<<<<<
 *                     if v.cigar_skip:
 *                         pos2 = v.pos2
 */
          __pyx_v_v = (*__pyx_v_itr_events);

          /* "dysgu/graph.pyx":1399
 *                 while itr_events != events_to_add.end():
 *                     v = dereference(itr_events)
 *                     if v.cigar_skip:             # <<<<<<<<<<<<<<
 *                         pos2 = v.pos2
 *                     else:
 */
          __pyx_t_9 = (__pyx_v_v.cigar_skip != 0);
          if (__pyx_t_9) {

            /* "dysgu/graph.pyx":1400
 *                     v = dereference(itr_events)
 *                     if v.cigar_skip:
 *                         pos2 = v.pos2             # <<<<<<<<<<<<<<
 *                     else:
 *                         pos2 = v.event_pos + v.length  # fall back on original cigar event length
 */
            __pyx_t_8 = __pyx_v_v.pos2;
            __pyx_v_pos2 = __pyx_t_8;

            /* "dysgu/graph.pyx":1399
 *                 while itr_events != events_to_add.end():
 *                     v = dereference(itr_events)
 *                     if v.cigar_skip:             # <<<<<<<<<<<<<<
 *                         pos2 = v.pos2
 *                     else:
 */
            goto __pyx_L45;
          }

          /* "dysgu/graph.pyx":1402
 *                         pos2 = v.pos2
 *                     else:
 *                         pos2 = v.event_pos + v.length  # fall back on original cigar event length             # <<<<<<<<<<<<<<
 * 
 *                     process_alignment(G, r, clip_l, max_dist, gettid,
 */
          /*else*/ {
            __pyx_v_pos2 = (__pyx_v_v.event_pos + __pyx_v_v.length);
          }
          __pyx_L45:;

          /* "dysgu/graph.pyx":1404
 *                         pos2 = v.event_pos + v.length  # fall back on original cigar event length
 * 
 *                     process_alignment(G, r, clip_l, max_dist, gettid,             # <<<<<<<<<<<<<<
 *                                       overlap_regions, clustering_dist, pe_scope,
 *                                       v.cigar_index, v.event_pos, paired_end, tell, genome_scanner,
 */
          if (!(likely(((__pyx_v_r) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_r, __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment))))) __PYX_ERR(1, 1404, __pyx_L1_error)

          /* "dysgu/graph.pyx":1409
 *                                       template_edges, node_to_name,
 *                                       v.pos2, mapq_thresh, clip_scope, v.read_enum, bad_clip_counter,
 *                                       mm_only, site_adder, v.length, trust_ins_len)             # <<<<<<<<<<<<<<
 * 
 *                     preincrement(itr_events)
 */
          __pyx_f_5dysgu_5graph_process_alignment(__pyx_v_G, ((struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment *)__pyx_v_r), __pyx_v_clip_l, __pyx_v_max_dist, __pyx_v_gettid, __pyx_v_overlap_regions, __pyx_v_clustering_dist, __pyx_v_pe_scope, __pyx_v_v.cigar_index, __pyx_v_v.event_pos, __pyx_v_paired_end, __pyx_v_tell, __pyx_v_genome_scanner, __pyx_v_template_edges, __pyx_v_node_to_name, __pyx_v_v.pos2, __pyx_v_mapq_thresh, __pyx_v_clip_scope, __pyx_v_v.read_enum, __pyx_v_bad_clip_counter, __pyx_v_mm_only, __pyx_v_site_adder, __pyx_v_v.length, __pyx_v_trust_ins_len);

          /* "dysgu/graph.pyx":1411
 *                                       mm_only, site_adder, v.length, trust_ins_len)
 * 
 *                     preincrement(itr_events)             # <<<<<<<<<<<<<<
 * 
 *     add_template_edges(G, template_edges)
 */
          (void)((++__pyx_v_itr_events));
        }

        /* "dysgu/graph.pyx":1394
 * 
 *             # process within-read events
 *             if not events_to_add.empty():             # <<<<<<<<<<<<<<
 *                 itr_events = events_to_add.begin()
 * 
 */
      }

      /* "dysgu/graph.pyx":1308
 *     for chunk in genome_scanner.iter_genome():
 * 
 *         for r, tell in chunk:             # <<<<<<<<<<<<<<
 * 
 *             if r.mapq < mapq_thresh:
 */
      __pyx_L6_continue:;
    }
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;

    /* "dysgu/graph.pyx":1306
 *     cdef CigarEvent v
 * 
 *     for chunk in genome_scanner.iter_genome():             # <<<<<<<<<<<<<<
 * 
 *         for r, tell in chunk:
 */
  }
  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

  /* "dysgu/graph.pyx":1413
 *                     preincrement(itr_events)
 * 
 *     add_template_edges(G, template_edges)             # <<<<<<<<<<<<<<
 * 
 *     if site_adder:
 */
  __pyx_f_5dysgu_5graph_add_template_edges(__pyx_v_G, ((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v_template_edges));

  /* "dysgu/graph.pyx":1415
 *     add_template_edges(G, template_edges)
 * 
 *     if site_adder:             # <<<<<<<<<<<<<<
 *         logging.info(f"Added {site_adder.count} variants from input sites")
 * 
 */
  __pyx_t_9 = __Pyx_PyObject_IsTrue(__pyx_v_site_adder); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(1, 1415, __pyx_L1_error)
  if (__pyx_t_9) {

    /* "dysgu/graph.pyx":1416
 * 
 *     if site_adder:
 *         logging.info(f"Added {site_adder.count} variants from input sites")             # <<<<<<<<<<<<<<
 * 
 *     return G, node_to_name, bad_clip_counter, site_adder
 */
    __Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_n_s_logging); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_info); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = PyTuple_New(3); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_10 = 0;
    __pyx_t_22 = 127;
    __Pyx_INCREF(__pyx_kp_u_Added);
    __pyx_t_10 += 6;
    __Pyx_GIVEREF(__pyx_kp_u_Added);
    PyTuple_SET_ITEM(__pyx_t_6, 0, __pyx_kp_u_Added);
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_site_adder, __pyx_n_s_count); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_2 = __Pyx_PyObject_FormatSimple(__pyx_t_5, __pyx_empty_unicode); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_22 = (__Pyx_PyUnicode_MAX_CHAR_VALUE(__pyx_t_2) > __pyx_t_22) ? __Pyx_PyUnicode_MAX_CHAR_VALUE(__pyx_t_2) : __pyx_t_22;
    __pyx_t_10 += __Pyx_PyUnicode_GET_LENGTH(__pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_6, 1, __pyx_t_2);
    __pyx_t_2 = 0;
    __Pyx_INCREF(__pyx_kp_u_variants_from_input_sites);
    __pyx_t_10 += 26;
    __Pyx_GIVEREF(__pyx_kp_u_variants_from_input_sites);
    PyTuple_SET_ITEM(__pyx_t_6, 2, __pyx_kp_u_variants_from_input_sites);
    __pyx_t_2 = __Pyx_PyUnicode_Join(__pyx_t_6, 3, __pyx_t_10, __pyx_t_22); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __pyx_t_6 = NULL;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_1))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_1);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_1, function);
      }
    }
    __pyx_t_7 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_6, __pyx_t_2) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_t_2);
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

    /* "dysgu/graph.pyx":1415
 *     add_template_edges(G, template_edges)
 * 
 *     if site_adder:             # <<<<<<<<<<<<<<
 *         logging.info(f"Added {site_adder.count} variants from input sites")
 * 
 */
  }

  /* "dysgu/graph.pyx":1418
 *         logging.info(f"Added {site_adder.count} variants from input sites")
 * 
 *     return G, node_to_name, bad_clip_counter, site_adder             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_7 = PyTuple_New(4); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1418, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_7);
  __Pyx_INCREF(__pyx_v_G);
  __Pyx_GIVEREF(__pyx_v_G);
  PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_v_G);
  __Pyx_INCREF(((PyObject *)__pyx_v_node_to_name));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_node_to_name));
  PyTuple_SET_ITEM(__pyx_t_7, 1, ((PyObject *)__pyx_v_node_to_name));
  __Pyx_INCREF(__pyx_v_bad_clip_counter);
  __Pyx_GIVEREF(__pyx_v_bad_clip_counter);
  PyTuple_SET_ITEM(__pyx_t_7, 2, __pyx_v_bad_clip_counter);
  __Pyx_INCREF(__pyx_v_site_adder);
  __Pyx_GIVEREF(__pyx_v_site_adder);
  PyTuple_SET_ITEM(__pyx_t_7, 3, __pyx_v_site_adder);
  __pyx_r = ((PyObject*)__pyx_t_7);
  __pyx_t_7 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1252
 * 
 * 
 * cpdef tuple construct_graph(genome_scanner, infile, int max_dist, int clustering_dist, int k=16, int m=7, int clip_l=21,             # <<<<<<<<<<<<<<
 *                             int min_sv_size=30,
 *                             int minimizer_support_thresh=2, int minimizer_breadth=3,
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_AddTraceback("dysgu.graph.construct_graph", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_t0);
  __Pyx_XDECREF((PyObject *)__pyx_v_template_edges);
  __Pyx_XDECREF((PyObject *)__pyx_v_node_to_name);
  __Pyx_XDECREF((PyObject *)__pyx_v_clip_scope);
  __Pyx_XDECREF((PyObject *)__pyx_v_pe_scope);
  __Pyx_XDECREF(__pyx_v_bad_clip_counter);
  __Pyx_XDECREF(__pyx_v_G);
  __Pyx_XDECREF(__pyx_v_site_adder);
  __Pyx_XDECREF(__pyx_v_overlap_regions);
  __Pyx_XDECREF(__pyx_v_gettid);
  __Pyx_XDECREF(__pyx_v_chunk);
  __Pyx_XDECREF(__pyx_v_r);
  __Pyx_XDECREF(__pyx_v_left_clip_size);
  __Pyx_XDECREF(__pyx_v_right_clip_size);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_1construct_graph(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_1construct_graph(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_genome_scanner = 0;
  PyObject *__pyx_v_infile = 0;
  int __pyx_v_max_dist;
  int __pyx_v_clustering_dist;
  int __pyx_v_k;
  int __pyx_v_m;
  int __pyx_v_clip_l;
  int __pyx_v_min_sv_size;
  int __pyx_v_minimizer_support_thresh;
  int __pyx_v_minimizer_breadth;
  int __pyx_v_minimizer_dist;
  int __pyx_v_mapq_thresh;
  PyObject *__pyx_v_debug = 0;
  PyObject *__pyx_v_procs = 0;
  int __pyx_v_paired_end;
  int __pyx_v_read_length;
  int __pyx_v_contigs;
  float __pyx_v_norm_thresh;
  float __pyx_v_spd_thresh;
  int __pyx_v_mm_only;
  PyObject *__pyx_v_sites = 0;
  int __pyx_v_trust_ins_len;
  PyObject *__pyx_v_low_mem = 0;
  PyObject *__pyx_v_temp_dir = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("construct_graph (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_genome_scanner,&__pyx_n_s_infile,&__pyx_n_s_max_dist,&__pyx_n_s_clustering_dist,&__pyx_n_s_k,&__pyx_n_s_m,&__pyx_n_s_clip_l,&__pyx_n_s_min_sv_size,&__pyx_n_s_minimizer_support_thresh,&__pyx_n_s_minimizer_breadth,&__pyx_n_s_minimizer_dist,&__pyx_n_s_mapq_thresh,&__pyx_n_s_debug,&__pyx_n_s_procs,&__pyx_n_s_paired_end,&__pyx_n_s_read_length,&__pyx_n_s_contigs,&__pyx_n_s_norm_thresh,&__pyx_n_s_spd_thresh,&__pyx_n_s_mm_only,&__pyx_n_s_sites,&__pyx_n_s_trust_ins_len,&__pyx_n_s_low_mem,&__pyx_n_s_temp_dir,0};
    PyObject* values[24] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};

    /* "dysgu/graph.pyx":1255
 *                             int min_sv_size=30,
 *                             int minimizer_support_thresh=2, int minimizer_breadth=3,
 *                             int minimizer_dist=10, int mapq_thresh=1, debug=None, procs=1,             # <<<<<<<<<<<<<<
 *                             int paired_end=1, int read_length=150, bint contigs=True,
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,
 */
    values[12] = ((PyObject *)Py_None);
    values[13] = ((PyObject *)__pyx_int_1);

    /* "dysgu/graph.pyx":1258
 *                             int paired_end=1, int read_length=150, bint contigs=True,
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):             # <<<<<<<<<<<<<<
 * 
 *     t0 = time.time()
 */
    values[20] = ((PyObject *)Py_None);
    values[22] = ((PyObject *)Py_False);
    values[23] = ((PyObject *)__pyx_kp_u__13);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
        CYTHON_FALLTHROUGH;
        case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
        CYTHON_FALLTHROUGH;
        case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
        CYTHON_FALLTHROUGH;
        case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
        CYTHON_FALLTHROUGH;
        case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
        CYTHON_FALLTHROUGH;
        case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
        CYTHON_FALLTHROUGH;
        case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
        CYTHON_FALLTHROUGH;
        case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
        CYTHON_FALLTHROUGH;
        case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
        CYTHON_FALLTHROUGH;
        case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
        CYTHON_FALLTHROUGH;
        case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
        CYTHON_FALLTHROUGH;
        case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
        CYTHON_FALLTHROUGH;
        case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
        CYTHON_FALLTHROUGH;
        case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
        CYTHON_FALLTHROUGH;
        case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
        CYTHON_FALLTHROUGH;
        case  9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
        CYTHON_FALLTHROUGH;
        case  8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
        CYTHON_FALLTHROUGH;
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        CYTHON_FALLTHROUGH;
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_genome_scanner)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_infile)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("construct_graph", 0, 4, 24, 1); __PYX_ERR(1, 1252, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_max_dist)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("construct_graph", 0, 4, 24, 2); __PYX_ERR(1, 1252, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  3:
        if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_clustering_dist)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("construct_graph", 0, 4, 24, 3); __PYX_ERR(1, 1252, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  4:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_k);
          if (value) { values[4] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case  5:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_m);
          if (value) { values[5] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case  6:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_clip_l);
          if (value) { values[6] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case  7:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_min_sv_size);
          if (value) { values[7] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case  8:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_minimizer_support_thresh);
          if (value) { values[8] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case  9:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_minimizer_breadth);
          if (value) { values[9] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 10:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_minimizer_dist);
          if (value) { values[10] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 11:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_mapq_thresh);
          if (value) { values[11] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 12:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_debug);
          if (value) { values[12] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 13:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_procs);
          if (value) { values[13] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 14:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_paired_end);
          if (value) { values[14] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 15:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_read_length);
          if (value) { values[15] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 16:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_contigs);
          if (value) { values[16] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 17:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_norm_thresh);
          if (value) { values[17] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 18:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_spd_thresh);
          if (value) { values[18] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 19:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_mm_only);
          if (value) { values[19] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 20:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_sites);
          if (value) { values[20] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 21:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_trust_ins_len);
          if (value) { values[21] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 22:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_low_mem);
          if (value) { values[22] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case 23:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_temp_dir);
          if (value) { values[23] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "construct_graph") < 0)) __PYX_ERR(1, 1252, __pyx_L3_error)
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
        CYTHON_FALLTHROUGH;
        case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
        CYTHON_FALLTHROUGH;
        case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
        CYTHON_FALLTHROUGH;
        case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
        CYTHON_FALLTHROUGH;
        case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
        CYTHON_FALLTHROUGH;
        case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
        CYTHON_FALLTHROUGH;
        case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
        CYTHON_FALLTHROUGH;
        case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
        CYTHON_FALLTHROUGH;
        case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
        CYTHON_FALLTHROUGH;
        case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
        CYTHON_FALLTHROUGH;
        case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
        CYTHON_FALLTHROUGH;
        case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
        CYTHON_FALLTHROUGH;
        case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
        CYTHON_FALLTHROUGH;
        case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
        CYTHON_FALLTHROUGH;
        case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
        CYTHON_FALLTHROUGH;
        case  9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
        CYTHON_FALLTHROUGH;
        case  8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
        CYTHON_FALLTHROUGH;
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        CYTHON_FALLTHROUGH;
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_genome_scanner = values[0];
    __pyx_v_infile = values[1];
    __pyx_v_max_dist = __Pyx_PyInt_As_int(values[2]); if (unlikely((__pyx_v_max_dist == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1252, __pyx_L3_error)
    __pyx_v_clustering_dist = __Pyx_PyInt_As_int(values[3]); if (unlikely((__pyx_v_clustering_dist == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1252, __pyx_L3_error)
    if (values[4]) {
      __pyx_v_k = __Pyx_PyInt_As_int(values[4]); if (unlikely((__pyx_v_k == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1252, __pyx_L3_error)
    } else {
      __pyx_v_k = ((int)16);
    }
    if (values[5]) {
      __pyx_v_m = __Pyx_PyInt_As_int(values[5]); if (unlikely((__pyx_v_m == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1252, __pyx_L3_error)
    } else {
      __pyx_v_m = ((int)7);
    }
    if (values[6]) {
      __pyx_v_clip_l = __Pyx_PyInt_As_int(values[6]); if (unlikely((__pyx_v_clip_l == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1252, __pyx_L3_error)
    } else {
      __pyx_v_clip_l = ((int)21);
    }
    if (values[7]) {
      __pyx_v_min_sv_size = __Pyx_PyInt_As_int(values[7]); if (unlikely((__pyx_v_min_sv_size == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1253, __pyx_L3_error)
    } else {
      __pyx_v_min_sv_size = ((int)30);
    }
    if (values[8]) {
      __pyx_v_minimizer_support_thresh = __Pyx_PyInt_As_int(values[8]); if (unlikely((__pyx_v_minimizer_support_thresh == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1254, __pyx_L3_error)
    } else {
      __pyx_v_minimizer_support_thresh = ((int)2);
    }
    if (values[9]) {
      __pyx_v_minimizer_breadth = __Pyx_PyInt_As_int(values[9]); if (unlikely((__pyx_v_minimizer_breadth == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1254, __pyx_L3_error)
    } else {
      __pyx_v_minimizer_breadth = ((int)3);
    }
    if (values[10]) {
      __pyx_v_minimizer_dist = __Pyx_PyInt_As_int(values[10]); if (unlikely((__pyx_v_minimizer_dist == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1255, __pyx_L3_error)
    } else {
      __pyx_v_minimizer_dist = ((int)10);
    }
    if (values[11]) {
      __pyx_v_mapq_thresh = __Pyx_PyInt_As_int(values[11]); if (unlikely((__pyx_v_mapq_thresh == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1255, __pyx_L3_error)
    } else {
      __pyx_v_mapq_thresh = ((int)1);
    }
    __pyx_v_debug = values[12];
    __pyx_v_procs = values[13];
    if (values[14]) {
      __pyx_v_paired_end = __Pyx_PyInt_As_int(values[14]); if (unlikely((__pyx_v_paired_end == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1256, __pyx_L3_error)
    } else {
      __pyx_v_paired_end = ((int)1);
    }
    if (values[15]) {
      __pyx_v_read_length = __Pyx_PyInt_As_int(values[15]); if (unlikely((__pyx_v_read_length == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1256, __pyx_L3_error)
    } else {
      __pyx_v_read_length = ((int)0x96);
    }
    if (values[16]) {
      __pyx_v_contigs = __Pyx_PyObject_IsTrue(values[16]); if (unlikely((__pyx_v_contigs == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1256, __pyx_L3_error)
    } else {

      /* "dysgu/graph.pyx":1256
 *                             int minimizer_support_thresh=2, int minimizer_breadth=3,
 *                             int minimizer_dist=10, int mapq_thresh=1, debug=None, procs=1,
 *                             int paired_end=1, int read_length=150, bint contigs=True,             # <<<<<<<<<<<<<<
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):
 */
      __pyx_v_contigs = ((int)1);
    }
    if (values[17]) {
      __pyx_v_norm_thresh = __pyx_PyFloat_AsFloat(values[17]); if (unlikely((__pyx_v_norm_thresh == (float)-1) && PyErr_Occurred())) __PYX_ERR(1, 1257, __pyx_L3_error)
    } else {
      __pyx_v_norm_thresh = ((float)100.0);
    }
    if (values[18]) {
      __pyx_v_spd_thresh = __pyx_PyFloat_AsFloat(values[18]); if (unlikely((__pyx_v_spd_thresh == (float)-1) && PyErr_Occurred())) __PYX_ERR(1, 1257, __pyx_L3_error)
    } else {
      __pyx_v_spd_thresh = ((float)0.3);
    }
    if (values[19]) {
      __pyx_v_mm_only = __Pyx_PyObject_IsTrue(values[19]); if (unlikely((__pyx_v_mm_only == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1257, __pyx_L3_error)
    } else {

      /* "dysgu/graph.pyx":1257
 *                             int minimizer_dist=10, int mapq_thresh=1, debug=None, procs=1,
 *                             int paired_end=1, int read_length=150, bint contigs=True,
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,             # <<<<<<<<<<<<<<
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):
 * 
 */
      __pyx_v_mm_only = ((int)0);
    }
    __pyx_v_sites = values[20];
    if (values[21]) {
      __pyx_v_trust_ins_len = __Pyx_PyObject_IsTrue(values[21]); if (unlikely((__pyx_v_trust_ins_len == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1258, __pyx_L3_error)
    } else {

      /* "dysgu/graph.pyx":1258
 *                             int paired_end=1, int read_length=150, bint contigs=True,
 *                             float norm_thresh=100, float spd_thresh=0.3, bint mm_only=False,
 *                             sites=None, bint trust_ins_len=True, low_mem=False, temp_dir="."):             # <<<<<<<<<<<<<<
 * 
 *     t0 = time.time()
 */
      __pyx_v_trust_ins_len = ((int)1);
    }
    __pyx_v_low_mem = values[22];
    __pyx_v_temp_dir = values[23];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("construct_graph", 0, 4, 24, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1252, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.construct_graph", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_construct_graph(__pyx_self, __pyx_v_genome_scanner, __pyx_v_infile, __pyx_v_max_dist, __pyx_v_clustering_dist, __pyx_v_k, __pyx_v_m, __pyx_v_clip_l, __pyx_v_min_sv_size, __pyx_v_minimizer_support_thresh, __pyx_v_minimizer_breadth, __pyx_v_minimizer_dist, __pyx_v_mapq_thresh, __pyx_v_debug, __pyx_v_procs, __pyx_v_paired_end, __pyx_v_read_length, __pyx_v_contigs, __pyx_v_norm_thresh, __pyx_v_spd_thresh, __pyx_v_mm_only, __pyx_v_sites, __pyx_v_trust_ins_len, __pyx_v_low_mem, __pyx_v_temp_dir);

  /* "dysgu/graph.pyx":1252
 * 
 * 
 * cpdef tuple construct_graph(genome_scanner, infile, int max_dist, int clustering_dist, int k=16, int m=7, int clip_l=21,             # <<<<<<<<<<<<<<
 *                             int min_sv_size=30,
 *                             int minimizer_support_thresh=2, int minimizer_breadth=3,
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_construct_graph(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_genome_scanner, PyObject *__pyx_v_infile, int __pyx_v_max_dist, int __pyx_v_clustering_dist, int __pyx_v_k, int __pyx_v_m, int __pyx_v_clip_l, int __pyx_v_min_sv_size, int __pyx_v_minimizer_support_thresh, int __pyx_v_minimizer_breadth, int __pyx_v_minimizer_dist, int __pyx_v_mapq_thresh, PyObject *__pyx_v_debug, PyObject *__pyx_v_procs, int __pyx_v_paired_end, int __pyx_v_read_length, int __pyx_v_contigs, float __pyx_v_norm_thresh, float __pyx_v_spd_thresh, int __pyx_v_mm_only, PyObject *__pyx_v_sites, int __pyx_v_trust_ins_len, PyObject *__pyx_v_low_mem, PyObject *__pyx_v_temp_dir) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  struct __pyx_opt_args_5dysgu_5graph_construct_graph __pyx_t_2;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("construct_graph", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2.__pyx_n = 20;
  __pyx_t_2.k = __pyx_v_k;
  __pyx_t_2.m = __pyx_v_m;
  __pyx_t_2.clip_l = __pyx_v_clip_l;
  __pyx_t_2.min_sv_size = __pyx_v_min_sv_size;
  __pyx_t_2.minimizer_support_thresh = __pyx_v_minimizer_support_thresh;
  __pyx_t_2.minimizer_breadth = __pyx_v_minimizer_breadth;
  __pyx_t_2.minimizer_dist = __pyx_v_minimizer_dist;
  __pyx_t_2.mapq_thresh = __pyx_v_mapq_thresh;
  __pyx_t_2.debug = __pyx_v_debug;
  __pyx_t_2.procs = __pyx_v_procs;
  __pyx_t_2.paired_end = __pyx_v_paired_end;
  __pyx_t_2.read_length = __pyx_v_read_length;
  __pyx_t_2.contigs = __pyx_v_contigs;
  __pyx_t_2.norm_thresh = __pyx_v_norm_thresh;
  __pyx_t_2.spd_thresh = __pyx_v_spd_thresh;
  __pyx_t_2.mm_only = __pyx_v_mm_only;
  __pyx_t_2.sites = __pyx_v_sites;
  __pyx_t_2.trust_ins_len = __pyx_v_trust_ins_len;
  __pyx_t_2.low_mem = __pyx_v_low_mem;
  __pyx_t_2.temp_dir = __pyx_v_temp_dir;
  __pyx_t_1 = __pyx_f_5dysgu_5graph_construct_graph(__pyx_v_genome_scanner, __pyx_v_infile, __pyx_v_max_dist, __pyx_v_clustering_dist, 0, &__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1252, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.construct_graph", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1421
 * 
 * 
 * cdef BFS_local(G, int source, unordered_set[int]& visited ):             # <<<<<<<<<<<<<<
 *     # Create a queue for BFS
 *     cdef array.array queue = array.array("L", [source])
 */

static PyObject *__pyx_f_5dysgu_5graph_BFS_local(PyObject *__pyx_v_G, int __pyx_v_source, robin_hood::unordered_set<int>  &__pyx_v_visited) {
  arrayobject *__pyx_v_queue = 0;
  PyObject *__pyx_v_nodes_found = NULL;
  int __pyx_v_u;
  int __pyx_v_v;
  std::vector<int>  __pyx_v_neighbors;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  std::vector<int>  __pyx_t_7;
  std::vector<int> ::iterator __pyx_t_8;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  int __pyx_t_11;
  int __pyx_t_12;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("BFS_local", 0);

  /* "dysgu/graph.pyx":1423
 * cdef BFS_local(G, int source, unordered_set[int]& visited ):
 *     # Create a queue for BFS
 *     cdef array.array queue = array.array("L", [source])             # <<<<<<<<<<<<<<
 *     nodes_found = set([])
 *     cdef int u, v
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_source); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1423, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1423, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_1);
  PyList_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
  __pyx_t_1 = 0;
  __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1423, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_n_u_L);
  __Pyx_GIVEREF(__pyx_n_u_L);
  PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_n_u_L);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_2);
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_7cpython_5array_array), __pyx_t_1, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1423, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v_queue = ((arrayobject *)__pyx_t_2);
  __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1424
 *     # Create a queue for BFS
 *     cdef array.array queue = array.array("L", [source])
 *     nodes_found = set([])             # <<<<<<<<<<<<<<
 *     cdef int u, v
 *     cdef vector[int] neighbors
 */
  __pyx_t_2 = PySet_New(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1424, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_v_nodes_found = ((PyObject*)__pyx_t_2);
  __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1427
 *     cdef int u, v
 *     cdef vector[int] neighbors
 *     while queue:             # <<<<<<<<<<<<<<
 *         u = queue.pop(0)
 *         neighbors = G.neighbors(u)
 */
  while (1) {
    __pyx_t_3 = __Pyx_PyObject_IsTrue(((PyObject *)__pyx_v_queue)); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1427, __pyx_L1_error)
    if (!__pyx_t_3) break;

    /* "dysgu/graph.pyx":1428
 *     cdef vector[int] neighbors
 *     while queue:
 *         u = queue.pop(0)             # <<<<<<<<<<<<<<
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:
 */
    __pyx_t_2 = __Pyx_PyObject_PopIndex(((PyObject *)__pyx_v_queue), __pyx_int_0, 0, 1, Py_ssize_t, PyInt_FromSsize_t); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1428, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_2); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1428, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_v_u = __pyx_t_4;

    /* "dysgu/graph.pyx":1429
 *     while queue:
 *         u = queue.pop(0)
 *         neighbors = G.neighbors(u)             # <<<<<<<<<<<<<<
 *         for v in neighbors:
 *             if visited.find(v) == visited.end():
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_neighbors); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1429, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1429, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_6 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_1);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_1, function);
      }
    }
    __pyx_t_2 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_6, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_t_5);
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1429, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_7 = __pyx_convert_vector_from_py_int(__pyx_t_2); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 1429, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_v_neighbors = __pyx_t_7;

    /* "dysgu/graph.pyx":1430
 *         u = queue.pop(0)
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:             # <<<<<<<<<<<<<<
 *             if visited.find(v) == visited.end():
 *                 if G.weight(u, v) > 1:
 */
    __pyx_t_8 = __pyx_v_neighbors.begin();
    for (;;) {
      if (!(__pyx_t_8 != __pyx_v_neighbors.end())) break;
      __pyx_t_4 = *__pyx_t_8;
      ++__pyx_t_8;
      __pyx_v_v = __pyx_t_4;

      /* "dysgu/graph.pyx":1431
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:
 *             if visited.find(v) == visited.end():             # <<<<<<<<<<<<<<
 *                 if G.weight(u, v) > 1:
 *                     if u not in nodes_found:
 */
      __pyx_t_3 = ((__pyx_v_visited.find(__pyx_v_v) == __pyx_v_visited.end()) != 0);
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1432
 *         for v in neighbors:
 *             if visited.find(v) == visited.end():
 *                 if G.weight(u, v) > 1:             # <<<<<<<<<<<<<<
 *                     if u not in nodes_found:
 *                         nodes_found.add(u)
 */
        __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_weight); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1432, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1432, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        __pyx_t_6 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1432, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_6);
        __pyx_t_9 = NULL;
        __pyx_t_4 = 0;
        if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
          __pyx_t_9 = PyMethod_GET_SELF(__pyx_t_1);
          if (likely(__pyx_t_9)) {
            PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
            __Pyx_INCREF(__pyx_t_9);
            __Pyx_INCREF(function);
            __Pyx_DECREF_SET(__pyx_t_1, function);
            __pyx_t_4 = 1;
          }
        }
        #if CYTHON_FAST_PYCALL
        if (PyFunction_Check(__pyx_t_1)) {
          PyObject *__pyx_temp[3] = {__pyx_t_9, __pyx_t_5, __pyx_t_6};
          __pyx_t_2 = __Pyx_PyFunction_FastCall(__pyx_t_1, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1432, __pyx_L1_error)
          __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
          __Pyx_GOTREF(__pyx_t_2);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        } else
        #endif
        #if CYTHON_FAST_PYCCALL
        if (__Pyx_PyFastCFunction_Check(__pyx_t_1)) {
          PyObject *__pyx_temp[3] = {__pyx_t_9, __pyx_t_5, __pyx_t_6};
          __pyx_t_2 = __Pyx_PyCFunction_FastCall(__pyx_t_1, __pyx_temp+1-__pyx_t_4, 2+__pyx_t_4); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1432, __pyx_L1_error)
          __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
          __Pyx_GOTREF(__pyx_t_2);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        } else
        #endif
        {
          __pyx_t_10 = PyTuple_New(2+__pyx_t_4); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1432, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_10);
          if (__pyx_t_9) {
            __Pyx_GIVEREF(__pyx_t_9); PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_9); __pyx_t_9 = NULL;
          }
          __Pyx_GIVEREF(__pyx_t_5);
          PyTuple_SET_ITEM(__pyx_t_10, 0+__pyx_t_4, __pyx_t_5);
          __Pyx_GIVEREF(__pyx_t_6);
          PyTuple_SET_ITEM(__pyx_t_10, 1+__pyx_t_4, __pyx_t_6);
          __pyx_t_5 = 0;
          __pyx_t_6 = 0;
          __pyx_t_2 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_10, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1432, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_2);
          __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
        }
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
        __pyx_t_1 = PyObject_RichCompare(__pyx_t_2, __pyx_int_1, Py_GT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1432, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1432, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1433
 *             if visited.find(v) == visited.end():
 *                 if G.weight(u, v) > 1:
 *                     if u not in nodes_found:             # <<<<<<<<<<<<<<
 *                         nodes_found.add(u)
 *                     if v not in nodes_found:
 */
          __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1433, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __pyx_t_3 = (__Pyx_PySet_ContainsTF(__pyx_t_1, __pyx_v_nodes_found, Py_NE)); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1433, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_t_11 = (__pyx_t_3 != 0);
          if (__pyx_t_11) {

            /* "dysgu/graph.pyx":1434
 *                 if G.weight(u, v) > 1:
 *                     if u not in nodes_found:
 *                         nodes_found.add(u)             # <<<<<<<<<<<<<<
 *                     if v not in nodes_found:
 *                         nodes_found.add(v)
 */
            __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1434, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_1);
            __pyx_t_12 = PySet_Add(__pyx_v_nodes_found, __pyx_t_1); if (unlikely(__pyx_t_12 == ((int)-1))) __PYX_ERR(1, 1434, __pyx_L1_error)
            __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

            /* "dysgu/graph.pyx":1433
 *             if visited.find(v) == visited.end():
 *                 if G.weight(u, v) > 1:
 *                     if u not in nodes_found:             # <<<<<<<<<<<<<<
 *                         nodes_found.add(u)
 *                     if v not in nodes_found:
 */
          }

          /* "dysgu/graph.pyx":1435
 *                     if u not in nodes_found:
 *                         nodes_found.add(u)
 *                     if v not in nodes_found:             # <<<<<<<<<<<<<<
 *                         nodes_found.add(v)
 *                         queue.append(v)
 */
          __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1435, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_1);
          __pyx_t_11 = (__Pyx_PySet_ContainsTF(__pyx_t_1, __pyx_v_nodes_found, Py_NE)); if (unlikely(__pyx_t_11 < 0)) __PYX_ERR(1, 1435, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
          __pyx_t_3 = (__pyx_t_11 != 0);
          if (__pyx_t_3) {

            /* "dysgu/graph.pyx":1436
 *                         nodes_found.add(u)
 *                     if v not in nodes_found:
 *                         nodes_found.add(v)             # <<<<<<<<<<<<<<
 *                         queue.append(v)
 *         visited.insert(u)
 */
            __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1436, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_1);
            __pyx_t_12 = PySet_Add(__pyx_v_nodes_found, __pyx_t_1); if (unlikely(__pyx_t_12 == ((int)-1))) __PYX_ERR(1, 1436, __pyx_L1_error)
            __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

            /* "dysgu/graph.pyx":1437
 *                     if v not in nodes_found:
 *                         nodes_found.add(v)
 *                         queue.append(v)             # <<<<<<<<<<<<<<
 *         visited.insert(u)
 *     return array.array("L", nodes_found)
 */
            __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1437, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_1);
            __pyx_t_12 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_queue), __pyx_t_1); if (unlikely(__pyx_t_12 == ((int)-1))) __PYX_ERR(1, 1437, __pyx_L1_error)
            __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

            /* "dysgu/graph.pyx":1435
 *                     if u not in nodes_found:
 *                         nodes_found.add(u)
 *                     if v not in nodes_found:             # <<<<<<<<<<<<<<
 *                         nodes_found.add(v)
 *                         queue.append(v)
 */
          }

          /* "dysgu/graph.pyx":1432
 *         for v in neighbors:
 *             if visited.find(v) == visited.end():
 *                 if G.weight(u, v) > 1:             # <<<<<<<<<<<<<<
 *                     if u not in nodes_found:
 *                         nodes_found.add(u)
 */
        }

        /* "dysgu/graph.pyx":1431
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:
 *             if visited.find(v) == visited.end():             # <<<<<<<<<<<<<<
 *                 if G.weight(u, v) > 1:
 *                     if u not in nodes_found:
 */
      }

      /* "dysgu/graph.pyx":1430
 *         u = queue.pop(0)
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:             # <<<<<<<<<<<<<<
 *             if visited.find(v) == visited.end():
 *                 if G.weight(u, v) > 1:
 */
    }

    /* "dysgu/graph.pyx":1438
 *                         nodes_found.add(v)
 *                         queue.append(v)
 *         visited.insert(u)             # <<<<<<<<<<<<<<
 *     return array.array("L", nodes_found)
 * 
 */
    __pyx_v_visited.insert(__pyx_v_u);
  }

  /* "dysgu/graph.pyx":1439
 *                         queue.append(v)
 *         visited.insert(u)
 *     return array.array("L", nodes_found)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1439, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_n_u_L);
  __Pyx_GIVEREF(__pyx_n_u_L);
  PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_n_u_L);
  __Pyx_INCREF(__pyx_v_nodes_found);
  __Pyx_GIVEREF(__pyx_v_nodes_found);
  PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_v_nodes_found);
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_7cpython_5array_array), __pyx_t_1, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1439, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1421
 * 
 * 
 * cdef BFS_local(G, int source, unordered_set[int]& visited ):             # <<<<<<<<<<<<<<
 *     # Create a queue for BFS
 *     cdef array.array queue = array.array("L", [source])
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_AddTraceback("dysgu.graph.BFS_local", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_queue);
  __Pyx_XDECREF(__pyx_v_nodes_found);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1442
 * 
 * 
 * cdef get_partitions(G, nodes):             # <<<<<<<<<<<<<<
 * 
 *     cdef unordered_set[int] seen
 */

static PyObject *__pyx_f_5dysgu_5graph_get_partitions(PyObject *__pyx_v_G, PyObject *__pyx_v_nodes) {
  robin_hood::unordered_set<int>  __pyx_v_seen;
  int __pyx_v_u;
  int __pyx_v_v;
  std::vector<int>  __pyx_v_neighbors;
  PyObject *__pyx_v_parts = NULL;
  PyObject *__pyx_v_found = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  Py_ssize_t __pyx_t_2;
  PyObject *(*__pyx_t_3)(PyObject *);
  PyObject *__pyx_t_4 = NULL;
  int __pyx_t_5;
  int __pyx_t_6;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *__pyx_t_9 = NULL;
  std::vector<int>  __pyx_t_10;
  std::vector<int> ::iterator __pyx_t_11;
  PyObject *__pyx_t_12 = NULL;
  PyObject *__pyx_t_13 = NULL;
  Py_ssize_t __pyx_t_14;
  int __pyx_t_15;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_partitions", 0);

  /* "dysgu/graph.pyx":1447
 *     cdef int u, v, i
 *     cdef vector[int] neighbors
 *     parts = []             # <<<<<<<<<<<<<<
 *     for u in nodes:
 *         if seen.find(u) != seen.end():
 */
  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1447, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_parts = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1448
 *     cdef vector[int] neighbors
 *     parts = []
 *     for u in nodes:             # <<<<<<<<<<<<<<
 *         if seen.find(u) != seen.end():
 *             continue
 */
  if (likely(PyList_CheckExact(__pyx_v_nodes)) || PyTuple_CheckExact(__pyx_v_nodes)) {
    __pyx_t_1 = __pyx_v_nodes; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0;
    __pyx_t_3 = NULL;
  } else {
    __pyx_t_2 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_nodes); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1448, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1448, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_3)) {
      if (likely(PyList_CheckExact(__pyx_t_1))) {
        if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1448, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1448, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      } else {
        if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1448, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1448, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      }
    } else {
      __pyx_t_4 = __pyx_t_3(__pyx_t_1);
      if (unlikely(!__pyx_t_4)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 1448, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_4);
    }
    __pyx_t_5 = __Pyx_PyInt_As_int(__pyx_t_4); if (unlikely((__pyx_t_5 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1448, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_v_u = __pyx_t_5;

    /* "dysgu/graph.pyx":1449
 *     parts = []
 *     for u in nodes:
 *         if seen.find(u) != seen.end():             # <<<<<<<<<<<<<<
 *             continue
 *         neighbors = G.neighbors(u)
 */
    __pyx_t_6 = ((__pyx_v_seen.find(__pyx_v_u) != __pyx_v_seen.end()) != 0);
    if (__pyx_t_6) {

      /* "dysgu/graph.pyx":1450
 *     for u in nodes:
 *         if seen.find(u) != seen.end():
 *             continue             # <<<<<<<<<<<<<<
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:
 */
      goto __pyx_L3_continue;

      /* "dysgu/graph.pyx":1449
 *     parts = []
 *     for u in nodes:
 *         if seen.find(u) != seen.end():             # <<<<<<<<<<<<<<
 *             continue
 *         neighbors = G.neighbors(u)
 */
    }

    /* "dysgu/graph.pyx":1451
 *         if seen.find(u) != seen.end():
 *             continue
 *         neighbors = G.neighbors(u)             # <<<<<<<<<<<<<<
 *         for v in neighbors:
 *             if seen.find(v) != seen.end():
 */
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_neighbors); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1451, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1451, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __pyx_t_9 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_7))) {
      __pyx_t_9 = PyMethod_GET_SELF(__pyx_t_7);
      if (likely(__pyx_t_9)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
        __Pyx_INCREF(__pyx_t_9);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_7, function);
      }
    }
    __pyx_t_4 = (__pyx_t_9) ? __Pyx_PyObject_Call2Args(__pyx_t_7, __pyx_t_9, __pyx_t_8) : __Pyx_PyObject_CallOneArg(__pyx_t_7, __pyx_t_8);
    __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
    __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
    if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1451, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_10 = __pyx_convert_vector_from_py_int(__pyx_t_4); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 1451, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_v_neighbors = __pyx_t_10;

    /* "dysgu/graph.pyx":1452
 *             continue
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:             # <<<<<<<<<<<<<<
 *             if seen.find(v) != seen.end():
 *                 continue
 */
    __pyx_t_11 = __pyx_v_neighbors.begin();
    for (;;) {
      if (!(__pyx_t_11 != __pyx_v_neighbors.end())) break;
      __pyx_t_5 = *__pyx_t_11;
      ++__pyx_t_11;
      __pyx_v_v = __pyx_t_5;

      /* "dysgu/graph.pyx":1453
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:
 *             if seen.find(v) != seen.end():             # <<<<<<<<<<<<<<
 *                 continue
 * 
 */
      __pyx_t_6 = ((__pyx_v_seen.find(__pyx_v_v) != __pyx_v_seen.end()) != 0);
      if (__pyx_t_6) {

        /* "dysgu/graph.pyx":1454
 *         for v in neighbors:
 *             if seen.find(v) != seen.end():
 *                 continue             # <<<<<<<<<<<<<<
 * 
 *             if G.weight(u, v) > 1:  # weight is 2 or 3, for normal or black edges
 */
        goto __pyx_L6_continue;

        /* "dysgu/graph.pyx":1453
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:
 *             if seen.find(v) != seen.end():             # <<<<<<<<<<<<<<
 *                 continue
 * 
 */
      }

      /* "dysgu/graph.pyx":1456
 *                 continue
 * 
 *             if G.weight(u, v) > 1:  # weight is 2 or 3, for normal or black edges             # <<<<<<<<<<<<<<
 *                 found = BFS_local(G, u, seen)
 *                 if len(found):
 */
      __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_weight); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1456, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __pyx_t_8 = __Pyx_PyInt_From_int(__pyx_v_u); if (unlikely(!__pyx_t_8)) __PYX_ERR(1, 1456, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      __pyx_t_9 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1456, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_12 = NULL;
      __pyx_t_5 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_7))) {
        __pyx_t_12 = PyMethod_GET_SELF(__pyx_t_7);
        if (likely(__pyx_t_12)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
          __Pyx_INCREF(__pyx_t_12);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_7, function);
          __pyx_t_5 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_7)) {
        PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_8, __pyx_t_9};
        __pyx_t_4 = __Pyx_PyFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_5, 2+__pyx_t_5); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1456, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
        __Pyx_GOTREF(__pyx_t_4);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_7)) {
        PyObject *__pyx_temp[3] = {__pyx_t_12, __pyx_t_8, __pyx_t_9};
        __pyx_t_4 = __Pyx_PyCFunction_FastCall(__pyx_t_7, __pyx_temp+1-__pyx_t_5, 2+__pyx_t_5); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1456, __pyx_L1_error)
        __Pyx_XDECREF(__pyx_t_12); __pyx_t_12 = 0;
        __Pyx_GOTREF(__pyx_t_4);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else
      #endif
      {
        __pyx_t_13 = PyTuple_New(2+__pyx_t_5); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1456, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_13);
        if (__pyx_t_12) {
          __Pyx_GIVEREF(__pyx_t_12); PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_t_12); __pyx_t_12 = NULL;
        }
        __Pyx_GIVEREF(__pyx_t_8);
        PyTuple_SET_ITEM(__pyx_t_13, 0+__pyx_t_5, __pyx_t_8);
        __Pyx_GIVEREF(__pyx_t_9);
        PyTuple_SET_ITEM(__pyx_t_13, 1+__pyx_t_5, __pyx_t_9);
        __pyx_t_8 = 0;
        __pyx_t_9 = 0;
        __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_7, __pyx_t_13, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1456, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
      }
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      __pyx_t_7 = PyObject_RichCompare(__pyx_t_4, __pyx_int_1, Py_GT); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1456, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_6 < 0)) __PYX_ERR(1, 1456, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      if (__pyx_t_6) {

        /* "dysgu/graph.pyx":1457
 * 
 *             if G.weight(u, v) > 1:  # weight is 2 or 3, for normal or black edges
 *                 found = BFS_local(G, u, seen)             # <<<<<<<<<<<<<<
 *                 if len(found):
 *                     parts.append(found)
 */
        __pyx_t_7 = __pyx_f_5dysgu_5graph_BFS_local(__pyx_v_G, __pyx_v_u, __pyx_v_seen); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1457, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_XDECREF_SET(__pyx_v_found, __pyx_t_7);
        __pyx_t_7 = 0;

        /* "dysgu/graph.pyx":1458
 *             if G.weight(u, v) > 1:  # weight is 2 or 3, for normal or black edges
 *                 found = BFS_local(G, u, seen)
 *                 if len(found):             # <<<<<<<<<<<<<<
 *                     parts.append(found)
 * 
 */
        __pyx_t_14 = PyObject_Length(__pyx_v_found); if (unlikely(__pyx_t_14 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1458, __pyx_L1_error)
        __pyx_t_6 = (__pyx_t_14 != 0);
        if (__pyx_t_6) {

          /* "dysgu/graph.pyx":1459
 *                 found = BFS_local(G, u, seen)
 *                 if len(found):
 *                     parts.append(found)             # <<<<<<<<<<<<<<
 * 
 *         seen.insert(u)
 */
          __pyx_t_15 = __Pyx_PyList_Append(__pyx_v_parts, __pyx_v_found); if (unlikely(__pyx_t_15 == ((int)-1))) __PYX_ERR(1, 1459, __pyx_L1_error)

          /* "dysgu/graph.pyx":1458
 *             if G.weight(u, v) > 1:  # weight is 2 or 3, for normal or black edges
 *                 found = BFS_local(G, u, seen)
 *                 if len(found):             # <<<<<<<<<<<<<<
 *                     parts.append(found)
 * 
 */
        }

        /* "dysgu/graph.pyx":1456
 *                 continue
 * 
 *             if G.weight(u, v) > 1:  # weight is 2 or 3, for normal or black edges             # <<<<<<<<<<<<<<
 *                 found = BFS_local(G, u, seen)
 *                 if len(found):
 */
      }

      /* "dysgu/graph.pyx":1452
 *             continue
 *         neighbors = G.neighbors(u)
 *         for v in neighbors:             # <<<<<<<<<<<<<<
 *             if seen.find(v) != seen.end():
 *                 continue
 */
      __pyx_L6_continue:;
    }

    /* "dysgu/graph.pyx":1461
 *                     parts.append(found)
 * 
 *         seen.insert(u)             # <<<<<<<<<<<<<<
 *     return parts
 * 
 */
    __pyx_v_seen.insert(__pyx_v_u);

    /* "dysgu/graph.pyx":1448
 *     cdef vector[int] neighbors
 *     parts = []
 *     for u in nodes:             # <<<<<<<<<<<<<<
 *         if seen.find(u) != seen.end():
 *             continue
 */
    __pyx_L3_continue:;
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1462
 * 
 *         seen.insert(u)
 *     return parts             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_parts);
  __pyx_r = __pyx_v_parts;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1442
 * 
 * 
 * cdef get_partitions(G, nodes):             # <<<<<<<<<<<<<<
 * 
 *     cdef unordered_set[int] seen
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_12);
  __Pyx_XDECREF(__pyx_t_13);
  __Pyx_AddTraceback("dysgu.graph.get_partitions", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_parts);
  __Pyx_XDECREF(__pyx_v_found);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1465
 * 
 * 
 * cdef tuple count_support_between(G, parts, int min_support):             # <<<<<<<<<<<<<<
 * 
 *     cdef int i, j, node, child, any_out_edges
 */

static PyObject *__pyx_f_5dysgu_5graph_count_support_between(PyObject *__pyx_v_G, PyObject *__pyx_v_parts, CYTHON_UNUSED int __pyx_v_min_support) {
  int __pyx_v_i;
  int __pyx_v_j;
  int __pyx_v_node;
  int __pyx_v_child;
  int __pyx_v_any_out_edges;
  PyObject *__pyx_v_t = 0;
  __Pyx_memviewslice __pyx_v_p = { 0, 0, { 0 }, { 0 }, { 0 } };
  __pyx_t_5dysgu_5graph_Py_Int2IntMap __pyx_v_p2i = 0;
  PyObject *__pyx_v_counts = NULL;
  PyObject *__pyx_v_self_counts = NULL;
  PyObject *__pyx_v_seen_t = NULL;
  std::vector<int>  __pyx_v_neighbors;
  PyObject *__pyx_v_current_t = NULL;
  PyObject *__pyx_8genexpr2__pyx_v_m = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_t_6;
  PyObject *(*__pyx_t_7)(PyObject *);
  __Pyx_memviewslice __pyx_t_8 = { 0, 0, { 0 }, { 0 }, { 0 } };
  Py_ssize_t __pyx_t_9;
  PyObject *(*__pyx_t_10)(PyObject *);
  int __pyx_t_11;
  PyObject *__pyx_t_12 = NULL;
  PyObject *__pyx_t_13 = NULL;
  PyObject *__pyx_t_14 = NULL;
  std::vector<int>  __pyx_t_15;
  std::vector<int> ::iterator __pyx_t_16;
  int __pyx_t_17;
  int __pyx_t_18;
  Py_ssize_t __pyx_t_19;
  int __pyx_t_20;
  Py_ssize_t __pyx_t_21;
  PyObject *__pyx_t_22 = NULL;
  Py_ssize_t __pyx_t_23;
  PyObject *__pyx_t_24 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("count_support_between", 0);

  /* "dysgu/graph.pyx":1471
 *     cdef unsigned long[:] p
 * 
 *     if len(parts) == 0:             # <<<<<<<<<<<<<<
 *         return {}, {}
 *     elif len(parts) == 1:
 */
  __pyx_t_1 = PyObject_Length(__pyx_v_parts); if (unlikely(__pyx_t_1 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1471, __pyx_L1_error)
  __pyx_t_2 = ((__pyx_t_1 == 0) != 0);
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":1472
 * 
 *     if len(parts) == 0:
 *         return {}, {}             # <<<<<<<<<<<<<<
 *     elif len(parts) == 1:
 *         return {}, {0: parts[0]}
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1472, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1472, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1472, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_4);
    __pyx_t_3 = 0;
    __pyx_t_4 = 0;
    __pyx_r = ((PyObject*)__pyx_t_5);
    __pyx_t_5 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1471
 *     cdef unsigned long[:] p
 * 
 *     if len(parts) == 0:             # <<<<<<<<<<<<<<
 *         return {}, {}
 *     elif len(parts) == 1:
 */
  }

  /* "dysgu/graph.pyx":1473
 *     if len(parts) == 0:
 *         return {}, {}
 *     elif len(parts) == 1:             # <<<<<<<<<<<<<<
 *         return {}, {0: parts[0]}
 * 
 */
  __pyx_t_1 = PyObject_Length(__pyx_v_parts); if (unlikely(__pyx_t_1 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1473, __pyx_L1_error)
  __pyx_t_2 = ((__pyx_t_1 == 1) != 0);
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":1474
 *         return {}, {}
 *     elif len(parts) == 1:
 *         return {}, {0: parts[0]}             # <<<<<<<<<<<<<<
 * 
 *     # Make a table to count from, int-int
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_5 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1474, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_4 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1474, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_3 = __Pyx_GetItemInt(__pyx_v_parts, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1474, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    if (PyDict_SetItem(__pyx_t_4, __pyx_int_0, __pyx_t_3) < 0) __PYX_ERR(1, 1474, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1474, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_4);
    __pyx_t_5 = 0;
    __pyx_t_4 = 0;
    __pyx_r = ((PyObject*)__pyx_t_3);
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1473
 *     if len(parts) == 0:
 *         return {}, {}
 *     elif len(parts) == 1:             # <<<<<<<<<<<<<<
 *         return {}, {0: parts[0]}
 * 
 */
  }

  /* "dysgu/graph.pyx":1477
 * 
 *     # Make a table to count from, int-int
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()             # <<<<<<<<<<<<<<
 *     for i, p in enumerate(parts):
 *         for node in p:
 */
  __pyx_t_3 = __Pyx_PyObject_CallNoArg(((PyObject *)__pyx_ptype_5dysgu_13map_set_utils_Py_Int2IntMap)); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1477, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_v_p2i = ((__pyx_t_5dysgu_5graph_Py_Int2IntMap)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1478
 *     # Make a table to count from, int-int
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         for node in p:
 *             p2i.insert(node, i)
 */
  __pyx_t_6 = 0;
  if (likely(PyList_CheckExact(__pyx_v_parts)) || PyTuple_CheckExact(__pyx_v_parts)) {
    __pyx_t_3 = __pyx_v_parts; __Pyx_INCREF(__pyx_t_3); __pyx_t_1 = 0;
    __pyx_t_7 = NULL;
  } else {
    __pyx_t_1 = -1; __pyx_t_3 = PyObject_GetIter(__pyx_v_parts); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1478, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = Py_TYPE(__pyx_t_3)->tp_iternext; if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1478, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_7)) {
      if (likely(PyList_CheckExact(__pyx_t_3))) {
        if (__pyx_t_1 >= PyList_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_1); __Pyx_INCREF(__pyx_t_4); __pyx_t_1++; if (unlikely(0 < 0)) __PYX_ERR(1, 1478, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1478, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      } else {
        if (__pyx_t_1 >= PyTuple_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_1); __Pyx_INCREF(__pyx_t_4); __pyx_t_1++; if (unlikely(0 < 0)) __PYX_ERR(1, 1478, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_3, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1478, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      }
    } else {
      __pyx_t_4 = __pyx_t_7(__pyx_t_3);
      if (unlikely(!__pyx_t_4)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 1478, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_4);
    }
    __pyx_t_8 = __Pyx_PyObject_to_MemoryviewSlice_ds_unsigned_long(__pyx_t_4, PyBUF_WRITABLE); if (unlikely(!__pyx_t_8.memview)) __PYX_ERR(1, 1478, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __PYX_XDEC_MEMVIEW(&__pyx_v_p, 1);
    __pyx_v_p = __pyx_t_8;
    __pyx_t_8.memview = NULL;
    __pyx_t_8.data = NULL;
    __pyx_v_i = __pyx_t_6;
    __pyx_t_6 = (__pyx_t_6 + 1);

    /* "dysgu/graph.pyx":1479
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):
 *         for node in p:             # <<<<<<<<<<<<<<
 *             p2i.insert(node, i)
 * 
 */
    __pyx_t_4 = __pyx_memoryview_fromslice(__pyx_v_p, 1, (PyObject *(*)(char *)) __pyx_memview_get_unsigned_long, (int (*)(char *, PyObject *)) __pyx_memview_set_unsigned_long, 0);; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1479, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    if (likely(PyList_CheckExact(__pyx_t_4)) || PyTuple_CheckExact(__pyx_t_4)) {
      __pyx_t_5 = __pyx_t_4; __Pyx_INCREF(__pyx_t_5); __pyx_t_9 = 0;
      __pyx_t_10 = NULL;
    } else {
      __pyx_t_9 = -1; __pyx_t_5 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1479, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_10 = Py_TYPE(__pyx_t_5)->tp_iternext; if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1479, __pyx_L1_error)
    }
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    for (;;) {
      if (likely(!__pyx_t_10)) {
        if (likely(PyList_CheckExact(__pyx_t_5))) {
          if (__pyx_t_9 >= PyList_GET_SIZE(__pyx_t_5)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_4 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_9); __Pyx_INCREF(__pyx_t_4); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(1, 1479, __pyx_L1_error)
          #else
          __pyx_t_4 = PySequence_ITEM(__pyx_t_5, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1479, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_4);
          #endif
        } else {
          if (__pyx_t_9 >= PyTuple_GET_SIZE(__pyx_t_5)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_9); __Pyx_INCREF(__pyx_t_4); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(1, 1479, __pyx_L1_error)
          #else
          __pyx_t_4 = PySequence_ITEM(__pyx_t_5, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1479, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_4);
          #endif
        }
      } else {
        __pyx_t_4 = __pyx_t_10(__pyx_t_5);
        if (unlikely(!__pyx_t_4)) {
          PyObject* exc_type = PyErr_Occurred();
          if (exc_type) {
            if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
            else __PYX_ERR(1, 1479, __pyx_L1_error)
          }
          break;
        }
        __Pyx_GOTREF(__pyx_t_4);
      }
      __pyx_t_11 = __Pyx_PyInt_As_int(__pyx_t_4); if (unlikely((__pyx_t_11 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1479, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      __pyx_v_node = __pyx_t_11;

      /* "dysgu/graph.pyx":1480
 *     for i, p in enumerate(parts):
 *         for node in p:
 *             p2i.insert(node, i)             # <<<<<<<<<<<<<<
 * 
 *     # Count the links between partitions. Split reads into sets ready for calling
 */
      ((struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i->__pyx_vtab)->insert(((struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i), __pyx_v_node, __pyx_v_i);

      /* "dysgu/graph.pyx":1479
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):
 *         for node in p:             # <<<<<<<<<<<<<<
 *             p2i.insert(node, i)
 * 
 */
    }
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1478
 *     # Make a table to count from, int-int
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         for node in p:
 *             p2i.insert(node, i)
 */
  }
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1485
 *     # No counting of read-pairs templates or 'support', just a count of linking alignments
 *     # counts (part_a, part_b): {part_a: {node 1, node 2 ..}, part_b: {node4, ..} }
 *     counts = {}             # <<<<<<<<<<<<<<
 *     self_counts = {}
 * 
 */
  __pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1485, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_v_counts = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1486
 *     # counts (part_a, part_b): {part_a: {node 1, node 2 ..}, part_b: {node4, ..} }
 *     counts = {}
 *     self_counts = {}             # <<<<<<<<<<<<<<
 * 
 *     seen_t = set([])
 */
  __pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1486, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_v_self_counts = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1488
 *     self_counts = {}
 * 
 *     seen_t = set([])             # <<<<<<<<<<<<<<
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):
 */
  __pyx_t_3 = PySet_New(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1488, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_v_seen_t = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1490
 *     seen_t = set([])
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         current_t = set([])
 *         for node in p:
 */
  __pyx_t_6 = 0;
  if (likely(PyList_CheckExact(__pyx_v_parts)) || PyTuple_CheckExact(__pyx_v_parts)) {
    __pyx_t_3 = __pyx_v_parts; __Pyx_INCREF(__pyx_t_3); __pyx_t_1 = 0;
    __pyx_t_7 = NULL;
  } else {
    __pyx_t_1 = -1; __pyx_t_3 = PyObject_GetIter(__pyx_v_parts); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1490, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_7 = Py_TYPE(__pyx_t_3)->tp_iternext; if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1490, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_7)) {
      if (likely(PyList_CheckExact(__pyx_t_3))) {
        if (__pyx_t_1 >= PyList_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_1); __Pyx_INCREF(__pyx_t_5); __pyx_t_1++; if (unlikely(0 < 0)) __PYX_ERR(1, 1490, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_3, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1490, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      } else {
        if (__pyx_t_1 >= PyTuple_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_1); __Pyx_INCREF(__pyx_t_5); __pyx_t_1++; if (unlikely(0 < 0)) __PYX_ERR(1, 1490, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_3, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1490, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      }
    } else {
      __pyx_t_5 = __pyx_t_7(__pyx_t_3);
      if (unlikely(!__pyx_t_5)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 1490, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_5);
    }
    __pyx_t_8 = __Pyx_PyObject_to_MemoryviewSlice_ds_unsigned_long(__pyx_t_5, PyBUF_WRITABLE); if (unlikely(!__pyx_t_8.memview)) __PYX_ERR(1, 1490, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __PYX_XDEC_MEMVIEW(&__pyx_v_p, 1);
    __pyx_v_p = __pyx_t_8;
    __pyx_t_8.memview = NULL;
    __pyx_t_8.data = NULL;
    __pyx_v_i = __pyx_t_6;
    __pyx_t_6 = (__pyx_t_6 + 1);

    /* "dysgu/graph.pyx":1491
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):
 *         current_t = set([])             # <<<<<<<<<<<<<<
 *         for node in p:
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 */
    __pyx_t_5 = PySet_New(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1491, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_XDECREF_SET(__pyx_v_current_t, ((PyObject*)__pyx_t_5));
    __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1492
 *     for i, p in enumerate(parts):
 *         current_t = set([])
 *         for node in p:             # <<<<<<<<<<<<<<
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 * 
 */
    __pyx_t_5 = __pyx_memoryview_fromslice(__pyx_v_p, 1, (PyObject *(*)(char *)) __pyx_memview_get_unsigned_long, (int (*)(char *, PyObject *)) __pyx_memview_set_unsigned_long, 0);; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1492, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    if (likely(PyList_CheckExact(__pyx_t_5)) || PyTuple_CheckExact(__pyx_t_5)) {
      __pyx_t_4 = __pyx_t_5; __Pyx_INCREF(__pyx_t_4); __pyx_t_9 = 0;
      __pyx_t_10 = NULL;
    } else {
      __pyx_t_9 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1492, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __pyx_t_10 = Py_TYPE(__pyx_t_4)->tp_iternext; if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1492, __pyx_L1_error)
    }
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    for (;;) {
      if (likely(!__pyx_t_10)) {
        if (likely(PyList_CheckExact(__pyx_t_4))) {
          if (__pyx_t_9 >= PyList_GET_SIZE(__pyx_t_4)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_9); __Pyx_INCREF(__pyx_t_5); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(1, 1492, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1492, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        } else {
          if (__pyx_t_9 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_9); __Pyx_INCREF(__pyx_t_5); __pyx_t_9++; if (unlikely(0 < 0)) __PYX_ERR(1, 1492, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_9); __pyx_t_9++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1492, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        }
      } else {
        __pyx_t_5 = __pyx_t_10(__pyx_t_4);
        if (unlikely(!__pyx_t_5)) {
          PyObject* exc_type = PyErr_Occurred();
          if (exc_type) {
            if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
            else __PYX_ERR(1, 1492, __pyx_L1_error)
          }
          break;
        }
        __Pyx_GOTREF(__pyx_t_5);
      }
      __pyx_t_11 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_11 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1492, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_v_node = __pyx_t_11;

      /* "dysgu/graph.pyx":1493
 *         current_t = set([])
 *         for node in p:
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges             # <<<<<<<<<<<<<<
 * 
 *             neighbors = G.neighbors(node)
 */
      __pyx_v_any_out_edges = 0;

      /* "dysgu/graph.pyx":1495
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 * 
 *             neighbors = G.neighbors(node)             # <<<<<<<<<<<<<<
 *             for child in neighbors:
 * 
 */
      __pyx_t_12 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_neighbors); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1495, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1495, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_13);
      __pyx_t_14 = NULL;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_12))) {
        __pyx_t_14 = PyMethod_GET_SELF(__pyx_t_12);
        if (likely(__pyx_t_14)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_12);
          __Pyx_INCREF(__pyx_t_14);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_12, function);
        }
      }
      __pyx_t_5 = (__pyx_t_14) ? __Pyx_PyObject_Call2Args(__pyx_t_12, __pyx_t_14, __pyx_t_13) : __Pyx_PyObject_CallOneArg(__pyx_t_12, __pyx_t_13);
      __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
      __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
      if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1495, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
      __pyx_t_15 = __pyx_convert_vector_from_py_int(__pyx_t_5); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 1495, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_v_neighbors = __pyx_t_15;

      /* "dysgu/graph.pyx":1496
 * 
 *             neighbors = G.neighbors(node)
 *             for child in neighbors:             # <<<<<<<<<<<<<<
 * 
 *                 if not p2i.has_key(child):
 */
      __pyx_t_16 = __pyx_v_neighbors.begin();
      for (;;) {
        if (!(__pyx_t_16 != __pyx_v_neighbors.end())) break;
        __pyx_t_11 = *__pyx_t_16;
        ++__pyx_t_16;
        __pyx_v_child = __pyx_t_11;

        /* "dysgu/graph.pyx":1498
 *             for child in neighbors:
 * 
 *                 if not p2i.has_key(child):             # <<<<<<<<<<<<<<
 *                     continue  # Exterior child, not in any partition
 * 
 */
        __pyx_t_2 = ((!(((struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i->__pyx_vtab)->has_key(((struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i), __pyx_v_child) != 0)) != 0);
        if (__pyx_t_2) {

          /* "dysgu/graph.pyx":1499
 * 
 *                 if not p2i.has_key(child):
 *                     continue  # Exterior child, not in any partition             # <<<<<<<<<<<<<<
 * 
 *                 # Partition of neighbor node
 */
          goto __pyx_L12_continue;

          /* "dysgu/graph.pyx":1498
 *             for child in neighbors:
 * 
 *                 if not p2i.has_key(child):             # <<<<<<<<<<<<<<
 *                     continue  # Exterior child, not in any partition
 * 
 */
        }

        /* "dysgu/graph.pyx":1502
 * 
 *                 # Partition of neighbor node
 *                 j = p2i.get(child)             # <<<<<<<<<<<<<<
 *                 if j != i:
 *                     any_out_edges = 1
 */
        __pyx_v_j = ((struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i->__pyx_vtab)->get(((struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i), __pyx_v_child);

        /* "dysgu/graph.pyx":1503
 *                 # Partition of neighbor node
 *                 j = p2i.get(child)
 *                 if j != i:             # <<<<<<<<<<<<<<
 *                     any_out_edges = 1
 *                     if j < i:
 */
        __pyx_t_2 = ((__pyx_v_j != __pyx_v_i) != 0);
        if (__pyx_t_2) {

          /* "dysgu/graph.pyx":1504
 *                 j = p2i.get(child)
 *                 if j != i:
 *                     any_out_edges = 1             # <<<<<<<<<<<<<<
 *                     if j < i:
 *                         t = (j, i)
 */
          __pyx_v_any_out_edges = 1;

          /* "dysgu/graph.pyx":1505
 *                 if j != i:
 *                     any_out_edges = 1
 *                     if j < i:             # <<<<<<<<<<<<<<
 *                         t = (j, i)
 *                     else:
 */
          __pyx_t_2 = ((__pyx_v_j < __pyx_v_i) != 0);
          if (__pyx_t_2) {

            /* "dysgu/graph.pyx":1506
 *                     any_out_edges = 1
 *                     if j < i:
 *                         t = (j, i)             # <<<<<<<<<<<<<<
 *                     else:
 *                         t = (i, j)
 */
            __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_j); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1506, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1506, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_13 = PyTuple_New(2); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1506, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __Pyx_GIVEREF(__pyx_t_5);
            PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_t_5);
            __Pyx_GIVEREF(__pyx_t_12);
            PyTuple_SET_ITEM(__pyx_t_13, 1, __pyx_t_12);
            __pyx_t_5 = 0;
            __pyx_t_12 = 0;
            __Pyx_XDECREF_SET(__pyx_v_t, ((PyObject*)__pyx_t_13));
            __pyx_t_13 = 0;

            /* "dysgu/graph.pyx":1505
 *                 if j != i:
 *                     any_out_edges = 1
 *                     if j < i:             # <<<<<<<<<<<<<<
 *                         t = (j, i)
 *                     else:
 */
            goto __pyx_L16;
          }

          /* "dysgu/graph.pyx":1508
 *                         t = (j, i)
 *                     else:
 *                         t = (i, j)             # <<<<<<<<<<<<<<
 * 
 *                     if t in seen_t:
 */
          /*else*/ {
            __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1508, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_j); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1508, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1508, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __Pyx_GIVEREF(__pyx_t_13);
            PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_13);
            __Pyx_GIVEREF(__pyx_t_12);
            PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_12);
            __pyx_t_13 = 0;
            __pyx_t_12 = 0;
            __Pyx_XDECREF_SET(__pyx_v_t, ((PyObject*)__pyx_t_5));
            __pyx_t_5 = 0;
          }
          __pyx_L16:;

          /* "dysgu/graph.pyx":1510
 *                         t = (i, j)
 * 
 *                     if t in seen_t:             # <<<<<<<<<<<<<<
 *                         continue
 * 
 */
          __pyx_t_2 = (__Pyx_PySet_ContainsTF(__pyx_v_t, __pyx_v_seen_t, Py_EQ)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 1510, __pyx_L1_error)
          __pyx_t_17 = (__pyx_t_2 != 0);
          if (__pyx_t_17) {

            /* "dysgu/graph.pyx":1511
 * 
 *                     if t in seen_t:
 *                         continue             # <<<<<<<<<<<<<<
 * 
 *                     if t not in counts:
 */
            goto __pyx_L12_continue;

            /* "dysgu/graph.pyx":1510
 *                         t = (i, j)
 * 
 *                     if t in seen_t:             # <<<<<<<<<<<<<<
 *                         continue
 * 
 */
          }

          /* "dysgu/graph.pyx":1513
 *                         continue
 * 
 *                     if t not in counts:             # <<<<<<<<<<<<<<
 *                         counts[t] = [set([]), set([])]
 * 
 */
          __pyx_t_17 = (__Pyx_PyDict_ContainsTF(__pyx_v_t, __pyx_v_counts, Py_NE)); if (unlikely(__pyx_t_17 < 0)) __PYX_ERR(1, 1513, __pyx_L1_error)
          __pyx_t_2 = (__pyx_t_17 != 0);
          if (__pyx_t_2) {

            /* "dysgu/graph.pyx":1514
 * 
 *                     if t not in counts:
 *                         counts[t] = [set([]), set([])]             # <<<<<<<<<<<<<<
 * 
 *                     if j < i:
 */
            __pyx_t_5 = PySet_New(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1514, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __pyx_t_12 = PySet_New(0); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1514, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_13 = PyList_New(2); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1514, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __Pyx_GIVEREF(__pyx_t_5);
            PyList_SET_ITEM(__pyx_t_13, 0, __pyx_t_5);
            __Pyx_GIVEREF(__pyx_t_12);
            PyList_SET_ITEM(__pyx_t_13, 1, __pyx_t_12);
            __pyx_t_5 = 0;
            __pyx_t_12 = 0;
            if (unlikely(PyDict_SetItem(__pyx_v_counts, __pyx_v_t, __pyx_t_13) < 0)) __PYX_ERR(1, 1514, __pyx_L1_error)
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;

            /* "dysgu/graph.pyx":1513
 *                         continue
 * 
 *                     if t not in counts:             # <<<<<<<<<<<<<<
 *                         counts[t] = [set([]), set([])]
 * 
 */
          }

          /* "dysgu/graph.pyx":1516
 *                         counts[t] = [set([]), set([])]
 * 
 *                     if j < i:             # <<<<<<<<<<<<<<
 *                         counts[t][0].add(child)
 *                         counts[t][1].add(node)
 */
          __pyx_t_2 = ((__pyx_v_j < __pyx_v_i) != 0);
          if (__pyx_t_2) {

            /* "dysgu/graph.pyx":1517
 * 
 *                     if j < i:
 *                         counts[t][0].add(child)             # <<<<<<<<<<<<<<
 *                         counts[t][1].add(node)
 *                     else:
 */
            __pyx_t_12 = __Pyx_PyDict_GetItem(__pyx_v_counts, __pyx_v_t); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1517, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_12, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1517, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __pyx_t_12 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_add); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1517, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_child); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1517, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __pyx_t_14 = NULL;
            if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_12))) {
              __pyx_t_14 = PyMethod_GET_SELF(__pyx_t_12);
              if (likely(__pyx_t_14)) {
                PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_12);
                __Pyx_INCREF(__pyx_t_14);
                __Pyx_INCREF(function);
                __Pyx_DECREF_SET(__pyx_t_12, function);
              }
            }
            __pyx_t_13 = (__pyx_t_14) ? __Pyx_PyObject_Call2Args(__pyx_t_12, __pyx_t_14, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_12, __pyx_t_5);
            __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1517, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;

            /* "dysgu/graph.pyx":1518
 *                     if j < i:
 *                         counts[t][0].add(child)
 *                         counts[t][1].add(node)             # <<<<<<<<<<<<<<
 *                     else:
 *                         counts[t][1].add(child)
 */
            __pyx_t_12 = __Pyx_PyDict_GetItem(__pyx_v_counts, __pyx_v_t); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1518, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_12, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1518, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __pyx_t_12 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_add); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1518, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1518, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __pyx_t_14 = NULL;
            if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_12))) {
              __pyx_t_14 = PyMethod_GET_SELF(__pyx_t_12);
              if (likely(__pyx_t_14)) {
                PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_12);
                __Pyx_INCREF(__pyx_t_14);
                __Pyx_INCREF(function);
                __Pyx_DECREF_SET(__pyx_t_12, function);
              }
            }
            __pyx_t_13 = (__pyx_t_14) ? __Pyx_PyObject_Call2Args(__pyx_t_12, __pyx_t_14, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_12, __pyx_t_5);
            __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1518, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;

            /* "dysgu/graph.pyx":1516
 *                         counts[t] = [set([]), set([])]
 * 
 *                     if j < i:             # <<<<<<<<<<<<<<
 *                         counts[t][0].add(child)
 *                         counts[t][1].add(node)
 */
            goto __pyx_L19;
          }

          /* "dysgu/graph.pyx":1520
 *                         counts[t][1].add(node)
 *                     else:
 *                         counts[t][1].add(child)             # <<<<<<<<<<<<<<
 *                         counts[t][0].add(node)
 * 
 */
          /*else*/ {
            __pyx_t_12 = __Pyx_PyDict_GetItem(__pyx_v_counts, __pyx_v_t); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1520, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_12, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1520, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __pyx_t_12 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_add); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1520, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_child); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1520, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __pyx_t_14 = NULL;
            if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_12))) {
              __pyx_t_14 = PyMethod_GET_SELF(__pyx_t_12);
              if (likely(__pyx_t_14)) {
                PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_12);
                __Pyx_INCREF(__pyx_t_14);
                __Pyx_INCREF(function);
                __Pyx_DECREF_SET(__pyx_t_12, function);
              }
            }
            __pyx_t_13 = (__pyx_t_14) ? __Pyx_PyObject_Call2Args(__pyx_t_12, __pyx_t_14, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_12, __pyx_t_5);
            __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1520, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;

            /* "dysgu/graph.pyx":1521
 *                     else:
 *                         counts[t][1].add(child)
 *                         counts[t][0].add(node)             # <<<<<<<<<<<<<<
 * 
 *                     current_t.add(t)
 */
            __pyx_t_12 = __Pyx_PyDict_GetItem(__pyx_v_counts, __pyx_v_t); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1521, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_5 = __Pyx_GetItemInt(__pyx_t_12, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1521, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __pyx_t_12 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_add); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1521, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1521, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __pyx_t_14 = NULL;
            if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_12))) {
              __pyx_t_14 = PyMethod_GET_SELF(__pyx_t_12);
              if (likely(__pyx_t_14)) {
                PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_12);
                __Pyx_INCREF(__pyx_t_14);
                __Pyx_INCREF(function);
                __Pyx_DECREF_SET(__pyx_t_12, function);
              }
            }
            __pyx_t_13 = (__pyx_t_14) ? __Pyx_PyObject_Call2Args(__pyx_t_12, __pyx_t_14, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_12, __pyx_t_5);
            __Pyx_XDECREF(__pyx_t_14); __pyx_t_14 = 0;
            __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
            if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1521, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_13);
            __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
            __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          }
          __pyx_L19:;

          /* "dysgu/graph.pyx":1523
 *                         counts[t][0].add(node)
 * 
 *                     current_t.add(t)             # <<<<<<<<<<<<<<
 * 
 *             # Count self links, important for resolving small SVs
 */
          __pyx_t_18 = PySet_Add(__pyx_v_current_t, __pyx_v_t); if (unlikely(__pyx_t_18 == ((int)-1))) __PYX_ERR(1, 1523, __pyx_L1_error)

          /* "dysgu/graph.pyx":1503
 *                 # Partition of neighbor node
 *                 j = p2i.get(child)
 *                 if j != i:             # <<<<<<<<<<<<<<
 *                     any_out_edges = 1
 *                     if j < i:
 */
        }

        /* "dysgu/graph.pyx":1496
 * 
 *             neighbors = G.neighbors(node)
 *             for child in neighbors:             # <<<<<<<<<<<<<<
 * 
 *                 if not p2i.has_key(child):
 */
        __pyx_L12_continue:;
      }

      /* "dysgu/graph.pyx":1526
 * 
 *             # Count self links, important for resolving small SVs
 *             if any_out_edges == 0:             # <<<<<<<<<<<<<<
 *                 if i not in self_counts:
 *                     self_counts[i] = array.array("L", [node])
 */
      __pyx_t_2 = ((__pyx_v_any_out_edges == 0) != 0);
      if (__pyx_t_2) {

        /* "dysgu/graph.pyx":1527
 *             # Count self links, important for resolving small SVs
 *             if any_out_edges == 0:
 *                 if i not in self_counts:             # <<<<<<<<<<<<<<
 *                     self_counts[i] = array.array("L", [node])
 *                 else:
 */
        __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1527, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_13);
        __pyx_t_2 = (__Pyx_PyDict_ContainsTF(__pyx_t_13, __pyx_v_self_counts, Py_NE)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 1527, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
        __pyx_t_17 = (__pyx_t_2 != 0);
        if (__pyx_t_17) {

          /* "dysgu/graph.pyx":1528
 *             if any_out_edges == 0:
 *                 if i not in self_counts:
 *                     self_counts[i] = array.array("L", [node])             # <<<<<<<<<<<<<<
 *                 else:
 *                     self_counts[i].append(node)
 */
          __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1528, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_13);
          __pyx_t_12 = PyList_New(1); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1528, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_12);
          __Pyx_GIVEREF(__pyx_t_13);
          PyList_SET_ITEM(__pyx_t_12, 0, __pyx_t_13);
          __pyx_t_13 = 0;
          __pyx_t_13 = PyTuple_New(2); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1528, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_13);
          __Pyx_INCREF(__pyx_n_u_L);
          __Pyx_GIVEREF(__pyx_n_u_L);
          PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_n_u_L);
          __Pyx_GIVEREF(__pyx_t_12);
          PyTuple_SET_ITEM(__pyx_t_13, 1, __pyx_t_12);
          __pyx_t_12 = 0;
          __pyx_t_12 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_7cpython_5array_array), __pyx_t_13, NULL); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1528, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_12);
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __pyx_t_13 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1528, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_13);
          if (unlikely(PyDict_SetItem(__pyx_v_self_counts, __pyx_t_13, __pyx_t_12) < 0)) __PYX_ERR(1, 1528, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;

          /* "dysgu/graph.pyx":1527
 *             # Count self links, important for resolving small SVs
 *             if any_out_edges == 0:
 *                 if i not in self_counts:             # <<<<<<<<<<<<<<
 *                     self_counts[i] = array.array("L", [node])
 *                 else:
 */
          goto __pyx_L21;
        }

        /* "dysgu/graph.pyx":1530
 *                     self_counts[i] = array.array("L", [node])
 *                 else:
 *                     self_counts[i].append(node)             # <<<<<<<<<<<<<<
 * 
 *         seen_t.update(current_t)  # Only count edge once
 */
        /*else*/ {
          __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1530, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_12);
          __pyx_t_13 = __Pyx_PyDict_GetItem(__pyx_v_self_counts, __pyx_t_12); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1530, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_13);
          __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
          __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1530, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_12);
          __pyx_t_18 = __Pyx_PyObject_Append(__pyx_t_13, __pyx_t_12); if (unlikely(__pyx_t_18 == ((int)-1))) __PYX_ERR(1, 1530, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
        }
        __pyx_L21:;

        /* "dysgu/graph.pyx":1526
 * 
 *             # Count self links, important for resolving small SVs
 *             if any_out_edges == 0:             # <<<<<<<<<<<<<<
 *                 if i not in self_counts:
 *                     self_counts[i] = array.array("L", [node])
 */
      }

      /* "dysgu/graph.pyx":1492
 *     for i, p in enumerate(parts):
 *         current_t = set([])
 *         for node in p:             # <<<<<<<<<<<<<<
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 * 
 */
    }
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1532
 *                     self_counts[i].append(node)
 * 
 *         seen_t.update(current_t)  # Only count edge once             # <<<<<<<<<<<<<<
 * 
 *         # save memory by converting support_between to array
 */
    __pyx_t_4 = __Pyx_CallUnboundCMethod1(&__pyx_umethod_PySet_Type_update, __pyx_v_seen_t, __pyx_v_current_t); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1532, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1535
 * 
 *         # save memory by converting support_between to array
 *         for t in current_t:             # <<<<<<<<<<<<<<
 *             counts[t] = [np.fromiter(m, dtype="uint32", count=len(m)) for m in counts[t]]
 * 
 */
    __pyx_t_9 = 0;
    __pyx_t_12 = __Pyx_set_iterator(__pyx_v_current_t, 1, (&__pyx_t_19), (&__pyx_t_11)); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1535, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_12);
    __Pyx_XDECREF(__pyx_t_4);
    __pyx_t_4 = __pyx_t_12;
    __pyx_t_12 = 0;
    while (1) {
      __pyx_t_20 = __Pyx_set_iter_next(__pyx_t_4, __pyx_t_19, &__pyx_t_9, &__pyx_t_12, __pyx_t_11);
      if (unlikely(__pyx_t_20 == 0)) break;
      if (unlikely(__pyx_t_20 == -1)) __PYX_ERR(1, 1535, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      if (!(likely(PyTuple_CheckExact(__pyx_t_12))||((__pyx_t_12) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_t_12)->tp_name), 0))) __PYX_ERR(1, 1535, __pyx_L1_error)
      __Pyx_XDECREF_SET(__pyx_v_t, ((PyObject*)__pyx_t_12));
      __pyx_t_12 = 0;

      /* "dysgu/graph.pyx":1536
 *         # save memory by converting support_between to array
 *         for t in current_t:
 *             counts[t] = [np.fromiter(m, dtype="uint32", count=len(m)) for m in counts[t]]             # <<<<<<<<<<<<<<
 * 
 *     return counts, self_counts
 */
      { /* enter inner scope */
        __pyx_t_12 = PyList_New(0); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1536, __pyx_L26_error)
        __Pyx_GOTREF(__pyx_t_12);
        __pyx_t_13 = __Pyx_PyDict_GetItem(__pyx_v_counts, __pyx_v_t); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1536, __pyx_L26_error)
        __Pyx_GOTREF(__pyx_t_13);
        if (likely(PyList_CheckExact(__pyx_t_13)) || PyTuple_CheckExact(__pyx_t_13)) {
          __pyx_t_5 = __pyx_t_13; __Pyx_INCREF(__pyx_t_5); __pyx_t_21 = 0;
          __pyx_t_10 = NULL;
        } else {
          __pyx_t_21 = -1; __pyx_t_5 = PyObject_GetIter(__pyx_t_13); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_10 = Py_TYPE(__pyx_t_5)->tp_iternext; if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1536, __pyx_L26_error)
        }
        __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
        for (;;) {
          if (likely(!__pyx_t_10)) {
            if (likely(PyList_CheckExact(__pyx_t_5))) {
              if (__pyx_t_21 >= PyList_GET_SIZE(__pyx_t_5)) break;
              #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
              __pyx_t_13 = PyList_GET_ITEM(__pyx_t_5, __pyx_t_21); __Pyx_INCREF(__pyx_t_13); __pyx_t_21++; if (unlikely(0 < 0)) __PYX_ERR(1, 1536, __pyx_L26_error)
              #else
              __pyx_t_13 = PySequence_ITEM(__pyx_t_5, __pyx_t_21); __pyx_t_21++; if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1536, __pyx_L26_error)
              __Pyx_GOTREF(__pyx_t_13);
              #endif
            } else {
              if (__pyx_t_21 >= PyTuple_GET_SIZE(__pyx_t_5)) break;
              #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
              __pyx_t_13 = PyTuple_GET_ITEM(__pyx_t_5, __pyx_t_21); __Pyx_INCREF(__pyx_t_13); __pyx_t_21++; if (unlikely(0 < 0)) __PYX_ERR(1, 1536, __pyx_L26_error)
              #else
              __pyx_t_13 = PySequence_ITEM(__pyx_t_5, __pyx_t_21); __pyx_t_21++; if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1536, __pyx_L26_error)
              __Pyx_GOTREF(__pyx_t_13);
              #endif
            }
          } else {
            __pyx_t_13 = __pyx_t_10(__pyx_t_5);
            if (unlikely(!__pyx_t_13)) {
              PyObject* exc_type = PyErr_Occurred();
              if (exc_type) {
                if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
                else __PYX_ERR(1, 1536, __pyx_L26_error)
              }
              break;
            }
            __Pyx_GOTREF(__pyx_t_13);
          }
          __Pyx_XDECREF_SET(__pyx_8genexpr2__pyx_v_m, __pyx_t_13);
          __pyx_t_13 = 0;
          __Pyx_GetModuleGlobalName(__pyx_t_13, __pyx_n_s_np); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_GOTREF(__pyx_t_13);
          __pyx_t_14 = __Pyx_PyObject_GetAttrStr(__pyx_t_13, __pyx_n_s_fromiter); if (unlikely(!__pyx_t_14)) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_GOTREF(__pyx_t_14);
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __pyx_t_13 = PyTuple_New(1); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_GOTREF(__pyx_t_13);
          __Pyx_INCREF(__pyx_8genexpr2__pyx_v_m);
          __Pyx_GIVEREF(__pyx_8genexpr2__pyx_v_m);
          PyTuple_SET_ITEM(__pyx_t_13, 0, __pyx_8genexpr2__pyx_v_m);
          __pyx_t_22 = __Pyx_PyDict_NewPresized(2); if (unlikely(!__pyx_t_22)) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_GOTREF(__pyx_t_22);
          if (PyDict_SetItem(__pyx_t_22, __pyx_n_s_dtype, __pyx_n_u_uint32) < 0) __PYX_ERR(1, 1536, __pyx_L26_error)
          __pyx_t_23 = PyObject_Length(__pyx_8genexpr2__pyx_v_m); if (unlikely(__pyx_t_23 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1536, __pyx_L26_error)
          __pyx_t_24 = PyInt_FromSsize_t(__pyx_t_23); if (unlikely(!__pyx_t_24)) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_GOTREF(__pyx_t_24);
          if (PyDict_SetItem(__pyx_t_22, __pyx_n_s_count, __pyx_t_24) < 0) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_DECREF(__pyx_t_24); __pyx_t_24 = 0;
          __pyx_t_24 = __Pyx_PyObject_Call(__pyx_t_14, __pyx_t_13, __pyx_t_22); if (unlikely(!__pyx_t_24)) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_GOTREF(__pyx_t_24);
          __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
          __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
          __Pyx_DECREF(__pyx_t_22); __pyx_t_22 = 0;
          if (unlikely(__Pyx_ListComp_Append(__pyx_t_12, (PyObject*)__pyx_t_24))) __PYX_ERR(1, 1536, __pyx_L26_error)
          __Pyx_DECREF(__pyx_t_24); __pyx_t_24 = 0;
        }
        __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        __Pyx_XDECREF(__pyx_8genexpr2__pyx_v_m); __pyx_8genexpr2__pyx_v_m = 0;
        goto __pyx_L29_exit_scope;
        __pyx_L26_error:;
        __Pyx_XDECREF(__pyx_8genexpr2__pyx_v_m); __pyx_8genexpr2__pyx_v_m = 0;
        goto __pyx_L1_error;
        __pyx_L29_exit_scope:;
      } /* exit inner scope */
      if (unlikely(PyDict_SetItem(__pyx_v_counts, __pyx_v_t, __pyx_t_12) < 0)) __PYX_ERR(1, 1536, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
    }
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1490
 *     seen_t = set([])
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         current_t = set([])
 *         for node in p:
 */
  }
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "dysgu/graph.pyx":1538
 *             counts[t] = [np.fromiter(m, dtype="uint32", count=len(m)) for m in counts[t]]
 * 
 *     return counts, self_counts             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 1538, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(__pyx_v_counts);
  __Pyx_GIVEREF(__pyx_v_counts);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_counts);
  __Pyx_INCREF(__pyx_v_self_counts);
  __Pyx_GIVEREF(__pyx_v_self_counts);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_v_self_counts);
  __pyx_r = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1465
 * 
 * 
 * cdef tuple count_support_between(G, parts, int min_support):             # <<<<<<<<<<<<<<
 * 
 *     cdef int i, j, node, child, any_out_edges
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __PYX_XDEC_MEMVIEW(&__pyx_t_8, 1);
  __Pyx_XDECREF(__pyx_t_12);
  __Pyx_XDECREF(__pyx_t_13);
  __Pyx_XDECREF(__pyx_t_14);
  __Pyx_XDECREF(__pyx_t_22);
  __Pyx_XDECREF(__pyx_t_24);
  __Pyx_AddTraceback("dysgu.graph.count_support_between", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_t);
  __PYX_XDEC_MEMVIEW(&__pyx_v_p, 1);
  __Pyx_XDECREF((PyObject *)__pyx_v_p2i);
  __Pyx_XDECREF(__pyx_v_counts);
  __Pyx_XDECREF(__pyx_v_self_counts);
  __Pyx_XDECREF(__pyx_v_seen_t);
  __Pyx_XDECREF(__pyx_v_current_t);
  __Pyx_XDECREF(__pyx_8genexpr2__pyx_v_m);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1541
 * 
 * 
 * cpdef break_large_component(G, component, int min_support):             # <<<<<<<<<<<<<<
 * 
 *     parts = get_partitions(G, component)  # list of arrays
 */

static PyObject *__pyx_pw_5dysgu_5graph_3break_large_component(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_break_large_component(PyObject *__pyx_v_G, PyObject *__pyx_v_component, int __pyx_v_min_support, CYTHON_UNUSED int __pyx_skip_dispatch) {
  PyObject *__pyx_v_parts = NULL;
  int __pyx_v_i;
  int __pyx_v_j;
  int __pyx_v_node;
  int __pyx_v_child;
  PyObject *__pyx_v_t = 0;
  __pyx_t_5dysgu_5graph_Py_Int2IntMap __pyx_v_p2i = 0;
  PyObject *__pyx_v_p = NULL;
  PyObject *__pyx_v_counts = NULL;
  PyObject *__pyx_v_self_counts = NULL;
  PyObject *__pyx_v_seen_t = NULL;
  std::vector<int>  __pyx_v_neighbors;
  PyObject *__pyx_v_current_t = NULL;
  CYTHON_UNUSED long __pyx_v_any_out_edges;
  PyObject *__pyx_v_f = NULL;
  PyObject *__pyx_v_jobs = NULL;
  PyObject *__pyx_v_u = NULL;
  PyObject *__pyx_v_v = NULL;
  PyObject *__pyx_v_sup = NULL;
  PyObject *__pyx_v_b = NULL;
  PyObject *__pyx_v_k = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  Py_ssize_t __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_t_6;
  PyObject *(*__pyx_t_7)(PyObject *);
  Py_ssize_t __pyx_t_8;
  PyObject *(*__pyx_t_9)(PyObject *);
  int __pyx_t_10;
  PyObject *__pyx_t_11 = NULL;
  PyObject *__pyx_t_12 = NULL;
  PyObject *__pyx_t_13 = NULL;
  std::vector<int>  __pyx_t_14;
  std::vector<int> ::iterator __pyx_t_15;
  int __pyx_t_16;
  PyObject *__pyx_t_17 = NULL;
  int __pyx_t_18;
  PyObject *(*__pyx_t_19)(PyObject *);
  int __pyx_t_20;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("break_large_component", 0);

  /* "dysgu/graph.pyx":1543
 * cpdef break_large_component(G, component, int min_support):
 * 
 *     parts = get_partitions(G, component)  # list of arrays             # <<<<<<<<<<<<<<
 * 
 *     # similar to count_support_between except only counts are returned without the node labels partitioned
 */
  __pyx_t_1 = __pyx_f_5dysgu_5graph_get_partitions(__pyx_v_G, __pyx_v_component); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1543, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_parts = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1549
 *     cdef tuple t
 * 
 *     if len(parts) == 0:             # <<<<<<<<<<<<<<
 *         return {}, {}
 *     elif len(parts) == 1:
 */
  __pyx_t_2 = PyObject_Length(__pyx_v_parts); if (unlikely(__pyx_t_2 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1549, __pyx_L1_error)
  __pyx_t_3 = ((__pyx_t_2 == 0) != 0);
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1550
 * 
 *     if len(parts) == 0:
 *         return {}, {}             # <<<<<<<<<<<<<<
 *     elif len(parts) == 1:
 *         return {}, {0: parts[0]}
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1550, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_4 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1550, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1550, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_1);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_4);
    __pyx_t_1 = 0;
    __pyx_t_4 = 0;
    __pyx_r = __pyx_t_5;
    __pyx_t_5 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1549
 *     cdef tuple t
 * 
 *     if len(parts) == 0:             # <<<<<<<<<<<<<<
 *         return {}, {}
 *     elif len(parts) == 1:
 */
  }

  /* "dysgu/graph.pyx":1551
 *     if len(parts) == 0:
 *         return {}, {}
 *     elif len(parts) == 1:             # <<<<<<<<<<<<<<
 *         return {}, {0: parts[0]}
 * 
 */
  __pyx_t_2 = PyObject_Length(__pyx_v_parts); if (unlikely(__pyx_t_2 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1551, __pyx_L1_error)
  __pyx_t_3 = ((__pyx_t_2 == 1) != 0);
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1552
 *         return {}, {}
 *     elif len(parts) == 1:
 *         return {}, {0: parts[0]}             # <<<<<<<<<<<<<<
 * 
 *     # Make a table to count from, int-int
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_5 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1552, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_4 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1552, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_parts, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1552, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    if (PyDict_SetItem(__pyx_t_4, __pyx_int_0, __pyx_t_1) < 0) __PYX_ERR(1, 1552, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1552, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_4);
    __pyx_t_5 = 0;
    __pyx_t_4 = 0;
    __pyx_r = __pyx_t_1;
    __pyx_t_1 = 0;
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1551
 *     if len(parts) == 0:
 *         return {}, {}
 *     elif len(parts) == 1:             # <<<<<<<<<<<<<<
 *         return {}, {0: parts[0]}
 * 
 */
  }

  /* "dysgu/graph.pyx":1555
 * 
 *     # Make a table to count from, int-int
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()             # <<<<<<<<<<<<<<
 *     for i, p in enumerate(parts):
 *         for node in p:
 */
  __pyx_t_1 = __Pyx_PyObject_CallNoArg(((PyObject *)__pyx_ptype_5dysgu_13map_set_utils_Py_Int2IntMap)); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1555, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_p2i = ((__pyx_t_5dysgu_5graph_Py_Int2IntMap)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1556
 *     # Make a table to count from, int-int
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         for node in p:
 *             p2i.insert(node, i)
 */
  __pyx_t_6 = 0;
  if (likely(PyList_CheckExact(__pyx_v_parts)) || PyTuple_CheckExact(__pyx_v_parts)) {
    __pyx_t_1 = __pyx_v_parts; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0;
    __pyx_t_7 = NULL;
  } else {
    __pyx_t_2 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_parts); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1556, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_7 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1556, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_7)) {
      if (likely(PyList_CheckExact(__pyx_t_1))) {
        if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1556, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1556, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      } else {
        if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1556, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1556, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      }
    } else {
      __pyx_t_4 = __pyx_t_7(__pyx_t_1);
      if (unlikely(!__pyx_t_4)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 1556, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_4);
    }
    __Pyx_XDECREF_SET(__pyx_v_p, __pyx_t_4);
    __pyx_t_4 = 0;
    __pyx_v_i = __pyx_t_6;
    __pyx_t_6 = (__pyx_t_6 + 1);

    /* "dysgu/graph.pyx":1557
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):
 *         for node in p:             # <<<<<<<<<<<<<<
 *             p2i.insert(node, i)
 * 
 */
    if (likely(PyList_CheckExact(__pyx_v_p)) || PyTuple_CheckExact(__pyx_v_p)) {
      __pyx_t_4 = __pyx_v_p; __Pyx_INCREF(__pyx_t_4); __pyx_t_8 = 0;
      __pyx_t_9 = NULL;
    } else {
      __pyx_t_8 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_v_p); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1557, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __pyx_t_9 = Py_TYPE(__pyx_t_4)->tp_iternext; if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1557, __pyx_L1_error)
    }
    for (;;) {
      if (likely(!__pyx_t_9)) {
        if (likely(PyList_CheckExact(__pyx_t_4))) {
          if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_4)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_5); __pyx_t_8++; if (unlikely(0 < 0)) __PYX_ERR(1, 1557, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1557, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        } else {
          if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_5); __pyx_t_8++; if (unlikely(0 < 0)) __PYX_ERR(1, 1557, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1557, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        }
      } else {
        __pyx_t_5 = __pyx_t_9(__pyx_t_4);
        if (unlikely(!__pyx_t_5)) {
          PyObject* exc_type = PyErr_Occurred();
          if (exc_type) {
            if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
            else __PYX_ERR(1, 1557, __pyx_L1_error)
          }
          break;
        }
        __Pyx_GOTREF(__pyx_t_5);
      }
      __pyx_t_10 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_10 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1557, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_v_node = __pyx_t_10;

      /* "dysgu/graph.pyx":1558
 *     for i, p in enumerate(parts):
 *         for node in p:
 *             p2i.insert(node, i)             # <<<<<<<<<<<<<<
 * 
 *     # Count the links between partitions. Split reads into sets ready for calling
 */
      ((struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i->__pyx_vtab)->insert(((struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i), __pyx_v_node, __pyx_v_i);

      /* "dysgu/graph.pyx":1557
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):
 *         for node in p:             # <<<<<<<<<<<<<<
 *             p2i.insert(node, i)
 * 
 */
    }
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1556
 *     # Make a table to count from, int-int
 *     cdef Py_Int2IntMap p2i = map_set_utils.Py_Int2IntMap()
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         for node in p:
 *             p2i.insert(node, i)
 */
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1563
 *     # No counting of read-pairs templates or 'support', just a count of linking alignments
 *     # counts (part_a, part_b): number-of-links
 *     counts = defaultdict(int)             # <<<<<<<<<<<<<<
 *     self_counts = defaultdict(int)
 * 
 */
  __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_defaultdict); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1563, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_4))) {
    __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
    if (likely(__pyx_t_5)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
      __Pyx_INCREF(__pyx_t_5);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_4, function);
    }
  }
  __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_4, __pyx_t_5, ((PyObject *)(&PyInt_Type))) : __Pyx_PyObject_CallOneArg(__pyx_t_4, ((PyObject *)(&PyInt_Type)));
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1563, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_v_counts = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1564
 *     # counts (part_a, part_b): number-of-links
 *     counts = defaultdict(int)
 *     self_counts = defaultdict(int)             # <<<<<<<<<<<<<<
 * 
 *     seen_t = set([])
 */
  __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_defaultdict); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1564, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_5 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_4))) {
    __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
    if (likely(__pyx_t_5)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
      __Pyx_INCREF(__pyx_t_5);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_4, function);
    }
  }
  __pyx_t_1 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_4, __pyx_t_5, ((PyObject *)(&PyInt_Type))) : __Pyx_PyObject_CallOneArg(__pyx_t_4, ((PyObject *)(&PyInt_Type)));
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1564, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_v_self_counts = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1566
 *     self_counts = defaultdict(int)
 * 
 *     seen_t = set([])             # <<<<<<<<<<<<<<
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):
 */
  __pyx_t_1 = PySet_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1566, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_seen_t = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1568
 *     seen_t = set([])
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         current_t = set([])
 *         for node in p:
 */
  __pyx_t_6 = 0;
  if (likely(PyList_CheckExact(__pyx_v_parts)) || PyTuple_CheckExact(__pyx_v_parts)) {
    __pyx_t_1 = __pyx_v_parts; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0;
    __pyx_t_7 = NULL;
  } else {
    __pyx_t_2 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_parts); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1568, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_7 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1568, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_7)) {
      if (likely(PyList_CheckExact(__pyx_t_1))) {
        if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1568, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1568, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      } else {
        if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(1, 1568, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1568, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      }
    } else {
      __pyx_t_4 = __pyx_t_7(__pyx_t_1);
      if (unlikely(!__pyx_t_4)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 1568, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_4);
    }
    __Pyx_XDECREF_SET(__pyx_v_p, __pyx_t_4);
    __pyx_t_4 = 0;
    __pyx_v_i = __pyx_t_6;
    __pyx_t_6 = (__pyx_t_6 + 1);

    /* "dysgu/graph.pyx":1569
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):
 *         current_t = set([])             # <<<<<<<<<<<<<<
 *         for node in p:
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 */
    __pyx_t_4 = PySet_New(0); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1569, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_XDECREF_SET(__pyx_v_current_t, ((PyObject*)__pyx_t_4));
    __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1570
 *     for i, p in enumerate(parts):
 *         current_t = set([])
 *         for node in p:             # <<<<<<<<<<<<<<
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 * 
 */
    if (likely(PyList_CheckExact(__pyx_v_p)) || PyTuple_CheckExact(__pyx_v_p)) {
      __pyx_t_4 = __pyx_v_p; __Pyx_INCREF(__pyx_t_4); __pyx_t_8 = 0;
      __pyx_t_9 = NULL;
    } else {
      __pyx_t_8 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_v_p); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1570, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __pyx_t_9 = Py_TYPE(__pyx_t_4)->tp_iternext; if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1570, __pyx_L1_error)
    }
    for (;;) {
      if (likely(!__pyx_t_9)) {
        if (likely(PyList_CheckExact(__pyx_t_4))) {
          if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_4)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_5); __pyx_t_8++; if (unlikely(0 < 0)) __PYX_ERR(1, 1570, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1570, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        } else {
          if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
          #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
          __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_5); __pyx_t_8++; if (unlikely(0 < 0)) __PYX_ERR(1, 1570, __pyx_L1_error)
          #else
          __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1570, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          #endif
        }
      } else {
        __pyx_t_5 = __pyx_t_9(__pyx_t_4);
        if (unlikely(!__pyx_t_5)) {
          PyObject* exc_type = PyErr_Occurred();
          if (exc_type) {
            if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
            else __PYX_ERR(1, 1570, __pyx_L1_error)
          }
          break;
        }
        __Pyx_GOTREF(__pyx_t_5);
      }
      __pyx_t_10 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_10 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1570, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_v_node = __pyx_t_10;

      /* "dysgu/graph.pyx":1571
 *         current_t = set([])
 *         for node in p:
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges             # <<<<<<<<<<<<<<
 * 
 *             neighbors = G.neighbors(node)
 */
      __pyx_v_any_out_edges = 0;

      /* "dysgu/graph.pyx":1573
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 * 
 *             neighbors = G.neighbors(node)             # <<<<<<<<<<<<<<
 *             for child in neighbors:
 * 
 */
      __pyx_t_11 = __Pyx_PyObject_GetAttrStr(__pyx_v_G, __pyx_n_s_neighbors); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 1573, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_11);
      __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1573, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      __pyx_t_13 = NULL;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_11))) {
        __pyx_t_13 = PyMethod_GET_SELF(__pyx_t_11);
        if (likely(__pyx_t_13)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_11);
          __Pyx_INCREF(__pyx_t_13);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_11, function);
        }
      }
      __pyx_t_5 = (__pyx_t_13) ? __Pyx_PyObject_Call2Args(__pyx_t_11, __pyx_t_13, __pyx_t_12) : __Pyx_PyObject_CallOneArg(__pyx_t_11, __pyx_t_12);
      __Pyx_XDECREF(__pyx_t_13); __pyx_t_13 = 0;
      __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
      if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1573, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
      __pyx_t_14 = __pyx_convert_vector_from_py_int(__pyx_t_5); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 1573, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_v_neighbors = __pyx_t_14;

      /* "dysgu/graph.pyx":1574
 * 
 *             neighbors = G.neighbors(node)
 *             for child in neighbors:             # <<<<<<<<<<<<<<
 * 
 *                 if not p2i.has_key(child):
 */
      __pyx_t_15 = __pyx_v_neighbors.begin();
      for (;;) {
        if (!(__pyx_t_15 != __pyx_v_neighbors.end())) break;
        __pyx_t_10 = *__pyx_t_15;
        ++__pyx_t_15;
        __pyx_v_child = __pyx_t_10;

        /* "dysgu/graph.pyx":1576
 *             for child in neighbors:
 * 
 *                 if not p2i.has_key(child):             # <<<<<<<<<<<<<<
 *                     continue  # Exterior child, not in any partition
 * 
 */
        __pyx_t_3 = ((!(((struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i->__pyx_vtab)->has_key(((struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i), __pyx_v_child) != 0)) != 0);
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1577
 * 
 *                 if not p2i.has_key(child):
 *                     continue  # Exterior child, not in any partition             # <<<<<<<<<<<<<<
 * 
 *                 # Partition of neighbor node
 */
          goto __pyx_L12_continue;

          /* "dysgu/graph.pyx":1576
 *             for child in neighbors:
 * 
 *                 if not p2i.has_key(child):             # <<<<<<<<<<<<<<
 *                     continue  # Exterior child, not in any partition
 * 
 */
        }

        /* "dysgu/graph.pyx":1580
 * 
 *                 # Partition of neighbor node
 *                 j = p2i.get(child)             # <<<<<<<<<<<<<<
 *                 if j != i:
 *                     if j < i:
 */
        __pyx_v_j = ((struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i->__pyx_vtab)->get(((struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap *)__pyx_v_p2i), __pyx_v_child);

        /* "dysgu/graph.pyx":1581
 *                 # Partition of neighbor node
 *                 j = p2i.get(child)
 *                 if j != i:             # <<<<<<<<<<<<<<
 *                     if j < i:
 *                         t = (j, i)
 */
        __pyx_t_3 = ((__pyx_v_j != __pyx_v_i) != 0);
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1582
 *                 j = p2i.get(child)
 *                 if j != i:
 *                     if j < i:             # <<<<<<<<<<<<<<
 *                         t = (j, i)
 *                     else:
 */
          __pyx_t_3 = ((__pyx_v_j < __pyx_v_i) != 0);
          if (__pyx_t_3) {

            /* "dysgu/graph.pyx":1583
 *                 if j != i:
 *                     if j < i:
 *                         t = (j, i)             # <<<<<<<<<<<<<<
 *                     else:
 *                         t = (i, j)
 */
            __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_j); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1583, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __pyx_t_11 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 1583, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_11);
            __pyx_t_12 = PyTuple_New(2); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1583, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __Pyx_GIVEREF(__pyx_t_5);
            PyTuple_SET_ITEM(__pyx_t_12, 0, __pyx_t_5);
            __Pyx_GIVEREF(__pyx_t_11);
            PyTuple_SET_ITEM(__pyx_t_12, 1, __pyx_t_11);
            __pyx_t_5 = 0;
            __pyx_t_11 = 0;
            __Pyx_XDECREF_SET(__pyx_v_t, ((PyObject*)__pyx_t_12));
            __pyx_t_12 = 0;

            /* "dysgu/graph.pyx":1582
 *                 j = p2i.get(child)
 *                 if j != i:
 *                     if j < i:             # <<<<<<<<<<<<<<
 *                         t = (j, i)
 *                     else:
 */
            goto __pyx_L16;
          }

          /* "dysgu/graph.pyx":1585
 *                         t = (j, i)
 *                     else:
 *                         t = (i, j)             # <<<<<<<<<<<<<<
 * 
 *                     if t in seen_t:
 */
          /*else*/ {
            __pyx_t_12 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1585, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_12);
            __pyx_t_11 = __Pyx_PyInt_From_int(__pyx_v_j); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 1585, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_11);
            __pyx_t_5 = PyTuple_New(2); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1585, __pyx_L1_error)
            __Pyx_GOTREF(__pyx_t_5);
            __Pyx_GIVEREF(__pyx_t_12);
            PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_12);
            __Pyx_GIVEREF(__pyx_t_11);
            PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_11);
            __pyx_t_12 = 0;
            __pyx_t_11 = 0;
            __Pyx_XDECREF_SET(__pyx_v_t, ((PyObject*)__pyx_t_5));
            __pyx_t_5 = 0;
          }
          __pyx_L16:;

          /* "dysgu/graph.pyx":1587
 *                         t = (i, j)
 * 
 *                     if t in seen_t:             # <<<<<<<<<<<<<<
 *                         continue
 * 
 */
          __pyx_t_3 = (__Pyx_PySet_ContainsTF(__pyx_v_t, __pyx_v_seen_t, Py_EQ)); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1587, __pyx_L1_error)
          __pyx_t_16 = (__pyx_t_3 != 0);
          if (__pyx_t_16) {

            /* "dysgu/graph.pyx":1588
 * 
 *                     if t in seen_t:
 *                         continue             # <<<<<<<<<<<<<<
 * 
 *                     counts[t] += 1
 */
            goto __pyx_L12_continue;

            /* "dysgu/graph.pyx":1587
 *                         t = (i, j)
 * 
 *                     if t in seen_t:             # <<<<<<<<<<<<<<
 *                         continue
 * 
 */
          }

          /* "dysgu/graph.pyx":1590
 *                         continue
 * 
 *                     counts[t] += 1             # <<<<<<<<<<<<<<
 *                     current_t.add(t)
 *                 else:
 */
          __Pyx_INCREF(__pyx_v_t);
          __pyx_t_17 = __pyx_v_t;
          __pyx_t_5 = __Pyx_PyObject_GetItem(__pyx_v_counts, __pyx_t_17); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1590, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __pyx_t_11 = __Pyx_PyInt_AddObjC(__pyx_t_5, __pyx_int_1, 1, 1, 0); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 1590, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_11);
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
          if (unlikely(PyObject_SetItem(__pyx_v_counts, __pyx_t_17, __pyx_t_11) < 0)) __PYX_ERR(1, 1590, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
          __Pyx_DECREF(__pyx_t_17); __pyx_t_17 = 0;

          /* "dysgu/graph.pyx":1591
 * 
 *                     counts[t] += 1
 *                     current_t.add(t)             # <<<<<<<<<<<<<<
 *                 else:
 *                     self_counts[i] += 1
 */
          __pyx_t_18 = PySet_Add(__pyx_v_current_t, __pyx_v_t); if (unlikely(__pyx_t_18 == ((int)-1))) __PYX_ERR(1, 1591, __pyx_L1_error)

          /* "dysgu/graph.pyx":1581
 *                 # Partition of neighbor node
 *                 j = p2i.get(child)
 *                 if j != i:             # <<<<<<<<<<<<<<
 *                     if j < i:
 *                         t = (j, i)
 */
          goto __pyx_L15;
        }

        /* "dysgu/graph.pyx":1593
 *                     current_t.add(t)
 *                 else:
 *                     self_counts[i] += 1             # <<<<<<<<<<<<<<
 * 
 *         seen_t.update(current_t)  # Only count edge once
 */
        /*else*/ {
          __pyx_t_10 = __pyx_v_i;
          __pyx_t_11 = __Pyx_GetItemInt(__pyx_v_self_counts, __pyx_t_10, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 1593, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_11);
          __pyx_t_5 = __Pyx_PyInt_AddObjC(__pyx_t_11, __pyx_int_1, 1, 1, 0); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1593, __pyx_L1_error)
          __Pyx_GOTREF(__pyx_t_5);
          __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
          if (unlikely(__Pyx_SetItemInt(__pyx_v_self_counts, __pyx_t_10, __pyx_t_5, int, 1, __Pyx_PyInt_From_int, 0, 1, 0) < 0)) __PYX_ERR(1, 1593, __pyx_L1_error)
          __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
        }
        __pyx_L15:;

        /* "dysgu/graph.pyx":1574
 * 
 *             neighbors = G.neighbors(node)
 *             for child in neighbors:             # <<<<<<<<<<<<<<
 * 
 *                 if not p2i.has_key(child):
 */
        __pyx_L12_continue:;
      }

      /* "dysgu/graph.pyx":1570
 *     for i, p in enumerate(parts):
 *         current_t = set([])
 *         for node in p:             # <<<<<<<<<<<<<<
 *             any_out_edges = 0  # Keeps track of number of outgoing pairs, or self edges
 * 
 */
    }
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1595
 *                     self_counts[i] += 1
 * 
 *         seen_t.update(current_t)  # Only count edge once             # <<<<<<<<<<<<<<
 * 
 *     f = set([])
 */
    __pyx_t_4 = __Pyx_CallUnboundCMethod1(&__pyx_umethod_PySet_Type_update, __pyx_v_seen_t, __pyx_v_current_t); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1595, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "dysgu/graph.pyx":1568
 *     seen_t = set([])
 *     cdef vector[int] neighbors
 *     for i, p in enumerate(parts):             # <<<<<<<<<<<<<<
 *         current_t = set([])
 *         for node in p:
 */
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1597
 *         seen_t.update(current_t)  # Only count edge once
 * 
 *     f = set([])             # <<<<<<<<<<<<<<
 *     jobs = []
 *     for (u, v), sup in counts.items():
 */
  __pyx_t_1 = PySet_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1597, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_f = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1598
 * 
 *     f = set([])
 *     jobs = []             # <<<<<<<<<<<<<<
 *     for (u, v), sup in counts.items():
 *         if sup >= min_support:
 */
  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1598, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_jobs = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1599
 *     f = set([])
 *     jobs = []
 *     for (u, v), sup in counts.items():             # <<<<<<<<<<<<<<
 *         if sup >= min_support:
 *             f.add(u)
 */
  __pyx_t_2 = 0;
  if (unlikely(__pyx_v_counts == Py_None)) {
    PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%.30s'", "items");
    __PYX_ERR(1, 1599, __pyx_L1_error)
  }
  __pyx_t_4 = __Pyx_dict_iterator(__pyx_v_counts, 0, __pyx_n_s_items, (&__pyx_t_8), (&__pyx_t_6)); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1599, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_1);
  __pyx_t_1 = __pyx_t_4;
  __pyx_t_4 = 0;
  while (1) {
    __pyx_t_10 = __Pyx_dict_iter_next(__pyx_t_1, __pyx_t_8, &__pyx_t_2, &__pyx_t_4, &__pyx_t_5, NULL, __pyx_t_6);
    if (unlikely(__pyx_t_10 == 0)) break;
    if (unlikely(__pyx_t_10 == -1)) __PYX_ERR(1, 1599, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GOTREF(__pyx_t_5);
    if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) {
      PyObject* sequence = __pyx_t_4;
      Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
      if (unlikely(size != 2)) {
        if (size > 2) __Pyx_RaiseTooManyValuesError(2);
        else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
        __PYX_ERR(1, 1599, __pyx_L1_error)
      }
      #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
      if (likely(PyTuple_CheckExact(sequence))) {
        __pyx_t_11 = PyTuple_GET_ITEM(sequence, 0); 
        __pyx_t_12 = PyTuple_GET_ITEM(sequence, 1); 
      } else {
        __pyx_t_11 = PyList_GET_ITEM(sequence, 0); 
        __pyx_t_12 = PyList_GET_ITEM(sequence, 1); 
      }
      __Pyx_INCREF(__pyx_t_11);
      __Pyx_INCREF(__pyx_t_12);
      #else
      __pyx_t_11 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_11)) __PYX_ERR(1, 1599, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_11);
      __pyx_t_12 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1599, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      #endif
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    } else {
      Py_ssize_t index = -1;
      __pyx_t_13 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_13)) __PYX_ERR(1, 1599, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_13);
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      __pyx_t_19 = Py_TYPE(__pyx_t_13)->tp_iternext;
      index = 0; __pyx_t_11 = __pyx_t_19(__pyx_t_13); if (unlikely(!__pyx_t_11)) goto __pyx_L20_unpacking_failed;
      __Pyx_GOTREF(__pyx_t_11);
      index = 1; __pyx_t_12 = __pyx_t_19(__pyx_t_13); if (unlikely(!__pyx_t_12)) goto __pyx_L20_unpacking_failed;
      __Pyx_GOTREF(__pyx_t_12);
      if (__Pyx_IternextUnpackEndCheck(__pyx_t_19(__pyx_t_13), 2) < 0) __PYX_ERR(1, 1599, __pyx_L1_error)
      __pyx_t_19 = NULL;
      __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
      goto __pyx_L21_unpacking_done;
      __pyx_L20_unpacking_failed:;
      __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
      __pyx_t_19 = NULL;
      if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
      __PYX_ERR(1, 1599, __pyx_L1_error)
      __pyx_L21_unpacking_done:;
    }
    __Pyx_XDECREF_SET(__pyx_v_u, __pyx_t_11);
    __pyx_t_11 = 0;
    __Pyx_XDECREF_SET(__pyx_v_v, __pyx_t_12);
    __pyx_t_12 = 0;
    __Pyx_XDECREF_SET(__pyx_v_sup, __pyx_t_5);
    __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1600
 *     jobs = []
 *     for (u, v), sup in counts.items():
 *         if sup >= min_support:             # <<<<<<<<<<<<<<
 *             f.add(u)
 *             f.add(v)
 */
    __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_min_support); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1600, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_4 = PyObject_RichCompare(__pyx_v_sup, __pyx_t_5, Py_GE); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1600, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_16 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_16 < 0)) __PYX_ERR(1, 1600, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    if (__pyx_t_16) {

      /* "dysgu/graph.pyx":1601
 *     for (u, v), sup in counts.items():
 *         if sup >= min_support:
 *             f.add(u)             # <<<<<<<<<<<<<<
 *             f.add(v)
 *             b = parts[u]
 */
      __pyx_t_18 = PySet_Add(__pyx_v_f, __pyx_v_u); if (unlikely(__pyx_t_18 == ((int)-1))) __PYX_ERR(1, 1601, __pyx_L1_error)

      /* "dysgu/graph.pyx":1602
 *         if sup >= min_support:
 *             f.add(u)
 *             f.add(v)             # <<<<<<<<<<<<<<
 *             b = parts[u]
 *             b.extend(parts[v])
 */
      __pyx_t_18 = PySet_Add(__pyx_v_f, __pyx_v_v); if (unlikely(__pyx_t_18 == ((int)-1))) __PYX_ERR(1, 1602, __pyx_L1_error)

      /* "dysgu/graph.pyx":1603
 *             f.add(u)
 *             f.add(v)
 *             b = parts[u]             # <<<<<<<<<<<<<<
 *             b.extend(parts[v])
 *             jobs.append(b)
 */
      __pyx_t_4 = __Pyx_PyObject_GetItem(__pyx_v_parts, __pyx_v_u); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1603, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_XDECREF_SET(__pyx_v_b, __pyx_t_4);
      __pyx_t_4 = 0;

      /* "dysgu/graph.pyx":1604
 *             f.add(v)
 *             b = parts[u]
 *             b.extend(parts[v])             # <<<<<<<<<<<<<<
 *             jobs.append(b)
 * 
 */
      __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_b, __pyx_n_s_extend); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1604, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_12 = __Pyx_PyObject_GetItem(__pyx_v_parts, __pyx_v_v); if (unlikely(!__pyx_t_12)) __PYX_ERR(1, 1604, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_12);
      __pyx_t_11 = NULL;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
        __pyx_t_11 = PyMethod_GET_SELF(__pyx_t_5);
        if (likely(__pyx_t_11)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
          __Pyx_INCREF(__pyx_t_11);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_5, function);
        }
      }
      __pyx_t_4 = (__pyx_t_11) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_11, __pyx_t_12) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_t_12);
      __Pyx_XDECREF(__pyx_t_11); __pyx_t_11 = 0;
      __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
      if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1604, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

      /* "dysgu/graph.pyx":1605
 *             b = parts[u]
 *             b.extend(parts[v])
 *             jobs.append(b)             # <<<<<<<<<<<<<<
 * 
 *     for k, v in self_counts.items():
 */
      __pyx_t_18 = __Pyx_PyList_Append(__pyx_v_jobs, __pyx_v_b); if (unlikely(__pyx_t_18 == ((int)-1))) __PYX_ERR(1, 1605, __pyx_L1_error)

      /* "dysgu/graph.pyx":1600
 *     jobs = []
 *     for (u, v), sup in counts.items():
 *         if sup >= min_support:             # <<<<<<<<<<<<<<
 *             f.add(u)
 *             f.add(v)
 */
    }
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1607
 *             jobs.append(b)
 * 
 *     for k, v in self_counts.items():             # <<<<<<<<<<<<<<
 *         if v >= min_support and k not in f:
 *             jobs.append(parts[k])
 */
  __pyx_t_8 = 0;
  if (unlikely(__pyx_v_self_counts == Py_None)) {
    PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%.30s'", "items");
    __PYX_ERR(1, 1607, __pyx_L1_error)
  }
  __pyx_t_4 = __Pyx_dict_iterator(__pyx_v_self_counts, 0, __pyx_n_s_items, (&__pyx_t_2), (&__pyx_t_6)); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1607, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_1);
  __pyx_t_1 = __pyx_t_4;
  __pyx_t_4 = 0;
  while (1) {
    __pyx_t_10 = __Pyx_dict_iter_next(__pyx_t_1, __pyx_t_2, &__pyx_t_8, &__pyx_t_4, &__pyx_t_5, NULL, __pyx_t_6);
    if (unlikely(__pyx_t_10 == 0)) break;
    if (unlikely(__pyx_t_10 == -1)) __PYX_ERR(1, 1607, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_XDECREF_SET(__pyx_v_k, __pyx_t_4);
    __pyx_t_4 = 0;
    __Pyx_XDECREF_SET(__pyx_v_v, __pyx_t_5);
    __pyx_t_5 = 0;

    /* "dysgu/graph.pyx":1608
 * 
 *     for k, v in self_counts.items():
 *         if v >= min_support and k not in f:             # <<<<<<<<<<<<<<
 *             jobs.append(parts[k])
 *     return jobs
 */
    __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_min_support); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1608, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_4 = PyObject_RichCompare(__pyx_v_v, __pyx_t_5, Py_GE); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1608, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1608, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    if (__pyx_t_3) {
    } else {
      __pyx_t_16 = __pyx_t_3;
      goto __pyx_L26_bool_binop_done;
    }
    __pyx_t_3 = (__Pyx_PySet_ContainsTF(__pyx_v_k, __pyx_v_f, Py_NE)); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1608, __pyx_L1_error)
    __pyx_t_20 = (__pyx_t_3 != 0);
    __pyx_t_16 = __pyx_t_20;
    __pyx_L26_bool_binop_done:;
    if (__pyx_t_16) {

      /* "dysgu/graph.pyx":1609
 *     for k, v in self_counts.items():
 *         if v >= min_support and k not in f:
 *             jobs.append(parts[k])             # <<<<<<<<<<<<<<
 *     return jobs
 * 
 */
      __pyx_t_4 = __Pyx_PyObject_GetItem(__pyx_v_parts, __pyx_v_k); if (unlikely(!__pyx_t_4)) __PYX_ERR(1, 1609, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __pyx_t_18 = __Pyx_PyList_Append(__pyx_v_jobs, __pyx_t_4); if (unlikely(__pyx_t_18 == ((int)-1))) __PYX_ERR(1, 1609, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

      /* "dysgu/graph.pyx":1608
 * 
 *     for k, v in self_counts.items():
 *         if v >= min_support and k not in f:             # <<<<<<<<<<<<<<
 *             jobs.append(parts[k])
 *     return jobs
 */
    }
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1610
 *         if v >= min_support and k not in f:
 *             jobs.append(parts[k])
 *     return jobs             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_jobs);
  __pyx_r = __pyx_v_jobs;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1541
 * 
 * 
 * cpdef break_large_component(G, component, int min_support):             # <<<<<<<<<<<<<<
 * 
 *     parts = get_partitions(G, component)  # list of arrays
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_11);
  __Pyx_XDECREF(__pyx_t_12);
  __Pyx_XDECREF(__pyx_t_13);
  __Pyx_XDECREF(__pyx_t_17);
  __Pyx_AddTraceback("dysgu.graph.break_large_component", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_parts);
  __Pyx_XDECREF(__pyx_v_t);
  __Pyx_XDECREF((PyObject *)__pyx_v_p2i);
  __Pyx_XDECREF(__pyx_v_p);
  __Pyx_XDECREF(__pyx_v_counts);
  __Pyx_XDECREF(__pyx_v_self_counts);
  __Pyx_XDECREF(__pyx_v_seen_t);
  __Pyx_XDECREF(__pyx_v_current_t);
  __Pyx_XDECREF(__pyx_v_f);
  __Pyx_XDECREF(__pyx_v_jobs);
  __Pyx_XDECREF(__pyx_v_u);
  __Pyx_XDECREF(__pyx_v_v);
  __Pyx_XDECREF(__pyx_v_sup);
  __Pyx_XDECREF(__pyx_v_b);
  __Pyx_XDECREF(__pyx_v_k);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_3break_large_component(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_3break_large_component(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_G = 0;
  PyObject *__pyx_v_component = 0;
  int __pyx_v_min_support;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("break_large_component (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_G,&__pyx_n_s_component,&__pyx_n_s_min_support,0};
    PyObject* values[3] = {0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_G)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_component)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("break_large_component", 1, 3, 3, 1); __PYX_ERR(1, 1541, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_min_support)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("break_large_component", 1, 3, 3, 2); __PYX_ERR(1, 1541, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "break_large_component") < 0)) __PYX_ERR(1, 1541, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
    }
    __pyx_v_G = values[0];
    __pyx_v_component = values[1];
    __pyx_v_min_support = __Pyx_PyInt_As_int(values[2]); if (unlikely((__pyx_v_min_support == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1541, __pyx_L3_error)
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("break_large_component", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1541, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.break_large_component", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_2break_large_component(__pyx_self, __pyx_v_G, __pyx_v_component, __pyx_v_min_support);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_2break_large_component(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_G, PyObject *__pyx_v_component, int __pyx_v_min_support) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("break_large_component", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __pyx_f_5dysgu_5graph_break_large_component(__pyx_v_G, __pyx_v_component, __pyx_v_min_support, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1541, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.break_large_component", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "dysgu/graph.pyx":1613
 * 
 * 
 * cpdef proc_component(node_to_name, component, read_buffer, infile, G, int min_support, int procs, int paired_end,             # <<<<<<<<<<<<<<
 *                      sites_index):
 * 
 */

static PyObject *__pyx_pw_5dysgu_5graph_5proc_component(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyObject *__pyx_f_5dysgu_5graph_proc_component(PyObject *__pyx_v_node_to_name, PyObject *__pyx_v_component, PyObject *__pyx_v_read_buffer, CYTHON_UNUSED PyObject *__pyx_v_infile, PyObject *__pyx_v_G, int __pyx_v_min_support, int __pyx_v_procs, int __pyx_v_paired_end, PyObject *__pyx_v_sites_index, CYTHON_UNUSED int __pyx_skip_dispatch) {
  PyObject *__pyx_v_n2n = NULL;
  PyObject *__pyx_v_reads = NULL;
  int __pyx_v_support_estimate;
  int __pyx_v_v;
  PyObject *__pyx_v_info = NULL;
  PyObject *__pyx_v_key = NULL;
  PyObject *__pyx_v_partitions = NULL;
  PyObject *__pyx_v_support_between = NULL;
  PyObject *__pyx_v_support_within = NULL;
  PyObject *__pyx_v_d = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  Py_ssize_t __pyx_t_4;
  int __pyx_t_5;
  PyObject *(*__pyx_t_6)(PyObject *);
  PyObject *__pyx_t_7 = NULL;
  int __pyx_t_8;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  Py_ssize_t __pyx_t_11;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("proc_component", 0);

  /* "dysgu/graph.pyx":1616
 *                      sites_index):
 * 
 *     n2n = {}             # <<<<<<<<<<<<<<
 *     reads = {}
 *     cdef int support_estimate = 0
 */
  __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1616, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_n2n = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1617
 * 
 *     n2n = {}
 *     reads = {}             # <<<<<<<<<<<<<<
 *     cdef int support_estimate = 0
 *     cdef int v
 */
  __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1617, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_reads = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1618
 *     n2n = {}
 *     reads = {}
 *     cdef int support_estimate = 0             # <<<<<<<<<<<<<<
 *     cdef int v
 *     info = None
 */
  __pyx_v_support_estimate = 0;

  /* "dysgu/graph.pyx":1620
 *     cdef int support_estimate = 0
 *     cdef int v
 *     info = None             # <<<<<<<<<<<<<<
 * 
 *     if min_support >= 3 and len(component) == 1 and not sites_index:
 */
  __Pyx_INCREF(Py_None);
  __pyx_v_info = ((PyObject*)Py_None);

  /* "dysgu/graph.pyx":1622
 *     info = None
 * 
 *     if min_support >= 3 and len(component) == 1 and not sites_index:             # <<<<<<<<<<<<<<
 *         return
 * 
 */
  __pyx_t_3 = ((__pyx_v_min_support >= 3) != 0);
  if (__pyx_t_3) {
  } else {
    __pyx_t_2 = __pyx_t_3;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_4 = PyObject_Length(__pyx_v_component); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1622, __pyx_L1_error)
  __pyx_t_3 = ((__pyx_t_4 == 1) != 0);
  if (__pyx_t_3) {
  } else {
    __pyx_t_2 = __pyx_t_3;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_sites_index); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1622, __pyx_L1_error)
  __pyx_t_5 = ((!__pyx_t_3) != 0);
  __pyx_t_2 = __pyx_t_5;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_2) {

    /* "dysgu/graph.pyx":1623
 * 
 *     if min_support >= 3 and len(component) == 1 and not sites_index:
 *         return             # <<<<<<<<<<<<<<
 * 
 *     for v in component:
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_r = Py_None; __Pyx_INCREF(Py_None);
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1622
 *     info = None
 * 
 *     if min_support >= 3 and len(component) == 1 and not sites_index:             # <<<<<<<<<<<<<<
 *         return
 * 
 */
  }

  /* "dysgu/graph.pyx":1625
 *         return
 * 
 *     for v in component:             # <<<<<<<<<<<<<<
 * 
 *         # Add information from --sites, keep any read found that link to --sites variants
 */
  if (likely(PyList_CheckExact(__pyx_v_component)) || PyTuple_CheckExact(__pyx_v_component)) {
    __pyx_t_1 = __pyx_v_component; __Pyx_INCREF(__pyx_t_1); __pyx_t_4 = 0;
    __pyx_t_6 = NULL;
  } else {
    __pyx_t_4 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_component); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1625, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_6 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_6)) __PYX_ERR(1, 1625, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_6)) {
      if (likely(PyList_CheckExact(__pyx_t_1))) {
        if (__pyx_t_4 >= PyList_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_7 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_4); __Pyx_INCREF(__pyx_t_7); __pyx_t_4++; if (unlikely(0 < 0)) __PYX_ERR(1, 1625, __pyx_L1_error)
        #else
        __pyx_t_7 = PySequence_ITEM(__pyx_t_1, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1625, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        #endif
      } else {
        if (__pyx_t_4 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_7 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_4); __Pyx_INCREF(__pyx_t_7); __pyx_t_4++; if (unlikely(0 < 0)) __PYX_ERR(1, 1625, __pyx_L1_error)
        #else
        __pyx_t_7 = PySequence_ITEM(__pyx_t_1, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1625, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        #endif
      }
    } else {
      __pyx_t_7 = __pyx_t_6(__pyx_t_1);
      if (unlikely(!__pyx_t_7)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(1, 1625, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_7);
    }
    __pyx_t_8 = __Pyx_PyInt_As_int(__pyx_t_7); if (unlikely((__pyx_t_8 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1625, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_v_v = __pyx_t_8;

    /* "dysgu/graph.pyx":1628
 * 
 *         # Add information from --sites, keep any read found that link to --sites variants
 *         if sites_index and v in sites_index:             # <<<<<<<<<<<<<<
 *             if info is None:
 *                 info = {v: sites_index[v]}
 */
    __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_v_sites_index); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 1628, __pyx_L1_error)
    if (__pyx_t_5) {
    } else {
      __pyx_t_2 = __pyx_t_5;
      goto __pyx_L10_bool_binop_done;
    }
    __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1628, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_5 = (__Pyx_PySequence_ContainsTF(__pyx_t_7, __pyx_v_sites_index, Py_EQ)); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 1628, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_3 = (__pyx_t_5 != 0);
    __pyx_t_2 = __pyx_t_3;
    __pyx_L10_bool_binop_done:;
    if (__pyx_t_2) {

      /* "dysgu/graph.pyx":1629
 *         # Add information from --sites, keep any read found that link to --sites variants
 *         if sites_index and v in sites_index:
 *             if info is None:             # <<<<<<<<<<<<<<
 *                 info = {v: sites_index[v]}
 *             else:
 */
      __pyx_t_2 = (__pyx_v_info == ((PyObject*)Py_None));
      __pyx_t_3 = (__pyx_t_2 != 0);
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1630
 *         if sites_index and v in sites_index:
 *             if info is None:
 *                 info = {v: sites_index[v]}             # <<<<<<<<<<<<<<
 *             else:
 *                 info[v] = sites_index[v]
 */
        __pyx_t_7 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1630, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __pyx_t_9 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_9)) __PYX_ERR(1, 1630, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_9);
        __pyx_t_10 = __Pyx_GetItemInt(__pyx_v_sites_index, __pyx_v_v, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1630, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_10);
        if (PyDict_SetItem(__pyx_t_7, __pyx_t_9, __pyx_t_10) < 0) __PYX_ERR(1, 1630, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
        __Pyx_DECREF_SET(__pyx_v_info, ((PyObject*)__pyx_t_7));
        __pyx_t_7 = 0;

        /* "dysgu/graph.pyx":1629
 *         # Add information from --sites, keep any read found that link to --sites variants
 *         if sites_index and v in sites_index:
 *             if info is None:             # <<<<<<<<<<<<<<
 *                 info = {v: sites_index[v]}
 *             else:
 */
        goto __pyx_L12;
      }

      /* "dysgu/graph.pyx":1632
 *                 info = {v: sites_index[v]}
 *             else:
 *                 info[v] = sites_index[v]             # <<<<<<<<<<<<<<
 *             min_support = len(info) + 1
 *             continue
 */
      /*else*/ {
        __pyx_t_7 = __Pyx_GetItemInt(__pyx_v_sites_index, __pyx_v_v, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1632, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (unlikely(__pyx_v_info == Py_None)) {
          PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
          __PYX_ERR(1, 1632, __pyx_L1_error)
        }
        __pyx_t_10 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1632, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_10);
        if (unlikely(PyDict_SetItem(__pyx_v_info, __pyx_t_10, __pyx_t_7) < 0)) __PYX_ERR(1, 1632, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
      }
      __pyx_L12:;

      /* "dysgu/graph.pyx":1633
 *             else:
 *                 info[v] = sites_index[v]
 *             min_support = len(info) + 1             # <<<<<<<<<<<<<<
 *             continue
 * 
 */
      if (unlikely(__pyx_v_info == Py_None)) {
        PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
        __PYX_ERR(1, 1633, __pyx_L1_error)
      }
      __pyx_t_11 = PyDict_Size(__pyx_v_info); if (unlikely(__pyx_t_11 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1633, __pyx_L1_error)
      __pyx_v_min_support = (__pyx_t_11 + 1);

      /* "dysgu/graph.pyx":1634
 *                 info[v] = sites_index[v]
 *             min_support = len(info) + 1
 *             continue             # <<<<<<<<<<<<<<
 * 
 *         if procs == 1 and v in read_buffer:
 */
      goto __pyx_L7_continue;

      /* "dysgu/graph.pyx":1628
 * 
 *         # Add information from --sites, keep any read found that link to --sites variants
 *         if sites_index and v in sites_index:             # <<<<<<<<<<<<<<
 *             if info is None:
 *                 info = {v: sites_index[v]}
 */
    }

    /* "dysgu/graph.pyx":1636
 *             continue
 * 
 *         if procs == 1 and v in read_buffer:             # <<<<<<<<<<<<<<
 *             reads[v] = read_buffer[v]
 *         # Need to keep a record of all node info, and cigar indexes
 */
    __pyx_t_2 = ((__pyx_v_procs == 1) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_3 = __pyx_t_2;
      goto __pyx_L14_bool_binop_done;
    }
    __pyx_t_7 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1636, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_2 = (__Pyx_PySequence_ContainsTF(__pyx_t_7, __pyx_v_read_buffer, Py_EQ)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(1, 1636, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_5 = (__pyx_t_2 != 0);
    __pyx_t_3 = __pyx_t_5;
    __pyx_L14_bool_binop_done:;
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":1637
 * 
 *         if procs == 1 and v in read_buffer:
 *             reads[v] = read_buffer[v]             # <<<<<<<<<<<<<<
 *         # Need to keep a record of all node info, and cigar indexes
 *         key = node_to_name[v]
 */
      __pyx_t_7 = __Pyx_GetItemInt(__pyx_v_read_buffer, __pyx_v_v, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1637, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_7);
      __pyx_t_10 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1637, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_10);
      if (unlikely(PyDict_SetItem(__pyx_v_reads, __pyx_t_10, __pyx_t_7) < 0)) __PYX_ERR(1, 1637, __pyx_L1_error)
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

      /* "dysgu/graph.pyx":1636
 *             continue
 * 
 *         if procs == 1 and v in read_buffer:             # <<<<<<<<<<<<<<
 *             reads[v] = read_buffer[v]
 *         # Need to keep a record of all node info, and cigar indexes
 */
    }

    /* "dysgu/graph.pyx":1639
 *             reads[v] = read_buffer[v]
 *         # Need to keep a record of all node info, and cigar indexes
 *         key = node_to_name[v]             # <<<<<<<<<<<<<<
 * 
 *         if key.cigar_index != -1:
 */
    __pyx_t_7 = __Pyx_GetItemInt(__pyx_v_node_to_name, __pyx_v_v, int, 1, __Pyx_PyInt_From_int, 0, 1, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1639, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_XDECREF_SET(__pyx_v_key, __pyx_t_7);
    __pyx_t_7 = 0;

    /* "dysgu/graph.pyx":1641
 *         key = node_to_name[v]
 * 
 *         if key.cigar_index != -1:             # <<<<<<<<<<<<<<
 *             support_estimate += 2
 *         else:
 */
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_v_key, __pyx_n_s_cigar_index); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1641, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_10 = __Pyx_PyInt_NeObjC(__pyx_t_7, __pyx_int_neg_1, -1L, 0); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1641, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_10);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_10); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1641, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":1642
 * 
 *         if key.cigar_index != -1:
 *             support_estimate += 2             # <<<<<<<<<<<<<<
 *         else:
 *             support_estimate += 1
 */
      __pyx_v_support_estimate = (__pyx_v_support_estimate + 2);

      /* "dysgu/graph.pyx":1641
 *         key = node_to_name[v]
 * 
 *         if key.cigar_index != -1:             # <<<<<<<<<<<<<<
 *             support_estimate += 2
 *         else:
 */
      goto __pyx_L16;
    }

    /* "dysgu/graph.pyx":1644
 *             support_estimate += 2
 *         else:
 *             support_estimate += 1             # <<<<<<<<<<<<<<
 *         n2n[v] = key
 * 
 */
    /*else*/ {
      __pyx_v_support_estimate = (__pyx_v_support_estimate + 1);
    }
    __pyx_L16:;

    /* "dysgu/graph.pyx":1645
 *         else:
 *             support_estimate += 1
 *         n2n[v] = key             # <<<<<<<<<<<<<<
 * 
 *     if support_estimate < min_support:
 */
    __pyx_t_10 = __Pyx_PyInt_From_int(__pyx_v_v); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1645, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_10);
    if (unlikely(PyDict_SetItem(__pyx_v_n2n, __pyx_t_10, __pyx_v_key) < 0)) __PYX_ERR(1, 1645, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;

    /* "dysgu/graph.pyx":1625
 *         return
 * 
 *     for v in component:             # <<<<<<<<<<<<<<
 * 
 *         # Add information from --sites, keep any read found that link to --sites variants
 */
    __pyx_L7_continue:;
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1647
 *         n2n[v] = key
 * 
 *     if support_estimate < min_support:             # <<<<<<<<<<<<<<
 *         return
 * 
 */
  __pyx_t_3 = ((__pyx_v_support_estimate < __pyx_v_min_support) != 0);
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1648
 * 
 *     if support_estimate < min_support:
 *         return             # <<<<<<<<<<<<<<
 * 
 *     # Explore component for locally interacting nodes; create partitions using these
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_r = Py_None; __Pyx_INCREF(Py_None);
    goto __pyx_L0;

    /* "dysgu/graph.pyx":1647
 *         n2n[v] = key
 * 
 *     if support_estimate < min_support:             # <<<<<<<<<<<<<<
 *         return
 * 
 */
  }

  /* "dysgu/graph.pyx":1651
 * 
 *     # Explore component for locally interacting nodes; create partitions using these
 *     partitions = get_partitions(G, component)             # <<<<<<<<<<<<<<
 *     support_between, support_within = count_support_between(G, partitions, min_support)
 * 
 */
  __pyx_t_1 = __pyx_f_5dysgu_5graph_get_partitions(__pyx_v_G, __pyx_v_component); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1651, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_partitions = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1652
 *     # Explore component for locally interacting nodes; create partitions using these
 *     partitions = get_partitions(G, component)
 *     support_between, support_within = count_support_between(G, partitions, min_support)             # <<<<<<<<<<<<<<
 * 
 *     if len(support_between) == 0 and len(support_within) == 0:
 */
  __pyx_t_1 = __pyx_f_5dysgu_5graph_count_support_between(__pyx_v_G, __pyx_v_partitions, __pyx_v_min_support); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1652, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (likely(__pyx_t_1 != Py_None)) {
    PyObject* sequence = __pyx_t_1;
    Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
    if (unlikely(size != 2)) {
      if (size > 2) __Pyx_RaiseTooManyValuesError(2);
      else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
      __PYX_ERR(1, 1652, __pyx_L1_error)
    }
    #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    __pyx_t_10 = PyTuple_GET_ITEM(sequence, 0); 
    __pyx_t_7 = PyTuple_GET_ITEM(sequence, 1); 
    __Pyx_INCREF(__pyx_t_10);
    __Pyx_INCREF(__pyx_t_7);
    #else
    __pyx_t_10 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_10)) __PYX_ERR(1, 1652, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_10);
    __pyx_t_7 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1652, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    #endif
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  } else {
    __Pyx_RaiseNoneNotIterableError(); __PYX_ERR(1, 1652, __pyx_L1_error)
  }
  __pyx_v_support_between = __pyx_t_10;
  __pyx_t_10 = 0;
  __pyx_v_support_within = __pyx_t_7;
  __pyx_t_7 = 0;

  /* "dysgu/graph.pyx":1654
 *     support_between, support_within = count_support_between(G, partitions, min_support)
 * 
 *     if len(support_between) == 0 and len(support_within) == 0:             # <<<<<<<<<<<<<<
 *         if not paired_end:
 * 
 */
  __pyx_t_4 = PyObject_Length(__pyx_v_support_between); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1654, __pyx_L1_error)
  __pyx_t_5 = ((__pyx_t_4 == 0) != 0);
  if (__pyx_t_5) {
  } else {
    __pyx_t_3 = __pyx_t_5;
    goto __pyx_L19_bool_binop_done;
  }
  __pyx_t_4 = PyObject_Length(__pyx_v_support_within); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1654, __pyx_L1_error)
  __pyx_t_5 = ((__pyx_t_4 == 0) != 0);
  __pyx_t_3 = __pyx_t_5;
  __pyx_L19_bool_binop_done:;
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1655
 * 
 *     if len(support_between) == 0 and len(support_within) == 0:
 *         if not paired_end:             # <<<<<<<<<<<<<<
 * 
 *             if len(n2n) >= min_support or len(reads) >= min_support or info:
 */
    __pyx_t_3 = ((!(__pyx_v_paired_end != 0)) != 0);
    if (__pyx_t_3) {

      /* "dysgu/graph.pyx":1657
 *         if not paired_end:
 * 
 *             if len(n2n) >= min_support or len(reads) >= min_support or info:             # <<<<<<<<<<<<<<
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 */
      __pyx_t_4 = PyDict_Size(__pyx_v_n2n); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1657, __pyx_L1_error)
      __pyx_t_5 = ((__pyx_t_4 >= __pyx_v_min_support) != 0);
      if (!__pyx_t_5) {
      } else {
        __pyx_t_3 = __pyx_t_5;
        goto __pyx_L23_bool_binop_done;
      }
      __pyx_t_4 = PyDict_Size(__pyx_v_reads); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1657, __pyx_L1_error)
      __pyx_t_5 = ((__pyx_t_4 >= __pyx_v_min_support) != 0);
      if (!__pyx_t_5) {
      } else {
        __pyx_t_3 = __pyx_t_5;
        goto __pyx_L23_bool_binop_done;
      }
      __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_v_info); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 1657, __pyx_L1_error)
      __pyx_t_3 = __pyx_t_5;
      __pyx_L23_bool_binop_done:;
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1658
 * 
 *             if len(n2n) >= min_support or len(reads) >= min_support or info:
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}             # <<<<<<<<<<<<<<
 *                 if info:
 *                     d["info"] = info
 */
        __pyx_t_1 = __Pyx_PyDict_NewPresized(5); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1658, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __pyx_t_7 = PyList_New(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1658, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_parts, __pyx_t_7) < 0) __PYX_ERR(1, 1658, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __pyx_t_7 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1658, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_between, __pyx_t_7) < 0) __PYX_ERR(1, 1658, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_reads, __pyx_v_reads) < 0) __PYX_ERR(1, 1658, __pyx_L1_error)
        __pyx_t_7 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1658, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_within, __pyx_t_7) < 0) __PYX_ERR(1, 1658, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_n2n, __pyx_v_n2n) < 0) __PYX_ERR(1, 1658, __pyx_L1_error)
        __pyx_v_d = ((PyObject*)__pyx_t_1);
        __pyx_t_1 = 0;

        /* "dysgu/graph.pyx":1659
 *             if len(n2n) >= min_support or len(reads) >= min_support or info:
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:             # <<<<<<<<<<<<<<
 *                     d["info"] = info
 *                 return d
 */
        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_info); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1659, __pyx_L1_error)
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1660
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 *                     d["info"] = info             # <<<<<<<<<<<<<<
 *                 return d
 *             else:
 */
          if (unlikely(PyDict_SetItem(__pyx_v_d, __pyx_n_u_info, __pyx_v_info) < 0)) __PYX_ERR(1, 1660, __pyx_L1_error)

          /* "dysgu/graph.pyx":1659
 *             if len(n2n) >= min_support or len(reads) >= min_support or info:
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:             # <<<<<<<<<<<<<<
 *                     d["info"] = info
 *                 return d
 */
        }

        /* "dysgu/graph.pyx":1661
 *                 if info:
 *                     d["info"] = info
 *                 return d             # <<<<<<<<<<<<<<
 *             else:
 *                 return
 */
        __Pyx_XDECREF(__pyx_r);
        __Pyx_INCREF(__pyx_v_d);
        __pyx_r = __pyx_v_d;
        goto __pyx_L0;

        /* "dysgu/graph.pyx":1657
 *         if not paired_end:
 * 
 *             if len(n2n) >= min_support or len(reads) >= min_support or info:             # <<<<<<<<<<<<<<
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 */
      }

      /* "dysgu/graph.pyx":1663
 *                 return d
 *             else:
 *                 return             # <<<<<<<<<<<<<<
 * 
 *         else:
 */
      /*else*/ {
        __Pyx_XDECREF(__pyx_r);
        __pyx_r = Py_None; __Pyx_INCREF(Py_None);
        goto __pyx_L0;
      }

      /* "dysgu/graph.pyx":1655
 * 
 *     if len(support_between) == 0 and len(support_within) == 0:
 *         if not paired_end:             # <<<<<<<<<<<<<<
 * 
 *             if len(n2n) >= min_support or len(reads) >= min_support or info:
 */
    }

    /* "dysgu/graph.pyx":1667
 *         else:
 *             # single paired end template can have 3 nodes e.g. two reads plus supplementary
 *             if min_support == 1 and (len(n2n) >= min_support or len(reads) >= min_support):             # <<<<<<<<<<<<<<
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 */
    /*else*/ {
      __pyx_t_5 = ((__pyx_v_min_support == 1) != 0);
      if (__pyx_t_5) {
      } else {
        __pyx_t_3 = __pyx_t_5;
        goto __pyx_L28_bool_binop_done;
      }
      __pyx_t_4 = PyDict_Size(__pyx_v_n2n); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1667, __pyx_L1_error)
      __pyx_t_5 = ((__pyx_t_4 >= __pyx_v_min_support) != 0);
      if (!__pyx_t_5) {
      } else {
        __pyx_t_3 = __pyx_t_5;
        goto __pyx_L28_bool_binop_done;
      }
      __pyx_t_4 = PyDict_Size(__pyx_v_reads); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1667, __pyx_L1_error)
      __pyx_t_5 = ((__pyx_t_4 >= __pyx_v_min_support) != 0);
      __pyx_t_3 = __pyx_t_5;
      __pyx_L28_bool_binop_done:;
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1668
 *             # single paired end template can have 3 nodes e.g. two reads plus supplementary
 *             if min_support == 1 and (len(n2n) >= min_support or len(reads) >= min_support):
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}             # <<<<<<<<<<<<<<
 *                 if info:
 *                     d["info"] = info
 */
        __pyx_t_1 = __Pyx_PyDict_NewPresized(5); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1668, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __pyx_t_7 = PyList_New(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1668, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_parts, __pyx_t_7) < 0) __PYX_ERR(1, 1668, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __pyx_t_7 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1668, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_between, __pyx_t_7) < 0) __PYX_ERR(1, 1668, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_reads, __pyx_v_reads) < 0) __PYX_ERR(1, 1668, __pyx_L1_error)
        __pyx_t_7 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1668, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_within, __pyx_t_7) < 0) __PYX_ERR(1, 1668, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_n2n, __pyx_v_n2n) < 0) __PYX_ERR(1, 1668, __pyx_L1_error)
        __pyx_v_d = ((PyObject*)__pyx_t_1);
        __pyx_t_1 = 0;

        /* "dysgu/graph.pyx":1669
 *             if min_support == 1 and (len(n2n) >= min_support or len(reads) >= min_support):
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:             # <<<<<<<<<<<<<<
 *                     d["info"] = info
 *                 return d
 */
        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_info); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1669, __pyx_L1_error)
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1670
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 *                     d["info"] = info             # <<<<<<<<<<<<<<
 *                 return d
 * 
 */
          if (unlikely(PyDict_SetItem(__pyx_v_d, __pyx_n_u_info, __pyx_v_info) < 0)) __PYX_ERR(1, 1670, __pyx_L1_error)

          /* "dysgu/graph.pyx":1669
 *             if min_support == 1 and (len(n2n) >= min_support or len(reads) >= min_support):
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:             # <<<<<<<<<<<<<<
 *                     d["info"] = info
 *                 return d
 */
        }

        /* "dysgu/graph.pyx":1671
 *                 if info:
 *                     d["info"] = info
 *                 return d             # <<<<<<<<<<<<<<
 * 
 *             elif len(reads) >= min_support or info:
 */
        __Pyx_XDECREF(__pyx_r);
        __Pyx_INCREF(__pyx_v_d);
        __pyx_r = __pyx_v_d;
        goto __pyx_L0;

        /* "dysgu/graph.pyx":1667
 *         else:
 *             # single paired end template can have 3 nodes e.g. two reads plus supplementary
 *             if min_support == 1 and (len(n2n) >= min_support or len(reads) >= min_support):             # <<<<<<<<<<<<<<
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 */
      }

      /* "dysgu/graph.pyx":1673
 *                 return d
 * 
 *             elif len(reads) >= min_support or info:             # <<<<<<<<<<<<<<
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 */
      __pyx_t_4 = PyDict_Size(__pyx_v_reads); if (unlikely(__pyx_t_4 == ((Py_ssize_t)-1))) __PYX_ERR(1, 1673, __pyx_L1_error)
      __pyx_t_5 = ((__pyx_t_4 >= __pyx_v_min_support) != 0);
      if (!__pyx_t_5) {
      } else {
        __pyx_t_3 = __pyx_t_5;
        goto __pyx_L32_bool_binop_done;
      }
      __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_v_info); if (unlikely(__pyx_t_5 < 0)) __PYX_ERR(1, 1673, __pyx_L1_error)
      __pyx_t_3 = __pyx_t_5;
      __pyx_L32_bool_binop_done:;
      if (__pyx_t_3) {

        /* "dysgu/graph.pyx":1674
 * 
 *             elif len(reads) >= min_support or info:
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}             # <<<<<<<<<<<<<<
 *                 if info:
 *                     d["info"] = info
 */
        __pyx_t_1 = __Pyx_PyDict_NewPresized(5); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1674, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_1);
        __pyx_t_7 = PyList_New(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1674, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_parts, __pyx_t_7) < 0) __PYX_ERR(1, 1674, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __pyx_t_7 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1674, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_between, __pyx_t_7) < 0) __PYX_ERR(1, 1674, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_reads, __pyx_v_reads) < 0) __PYX_ERR(1, 1674, __pyx_L1_error)
        __pyx_t_7 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_7)) __PYX_ERR(1, 1674, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_within, __pyx_t_7) < 0) __PYX_ERR(1, 1674, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_n2n, __pyx_v_n2n) < 0) __PYX_ERR(1, 1674, __pyx_L1_error)
        __pyx_v_d = ((PyObject*)__pyx_t_1);
        __pyx_t_1 = 0;

        /* "dysgu/graph.pyx":1675
 *             elif len(reads) >= min_support or info:
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:             # <<<<<<<<<<<<<<
 *                     d["info"] = info
 *                 return d
 */
        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_info); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1675, __pyx_L1_error)
        if (__pyx_t_3) {

          /* "dysgu/graph.pyx":1676
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 *                     d["info"] = info             # <<<<<<<<<<<<<<
 *                 return d
 *             else:
 */
          if (unlikely(PyDict_SetItem(__pyx_v_d, __pyx_n_u_info, __pyx_v_info) < 0)) __PYX_ERR(1, 1676, __pyx_L1_error)

          /* "dysgu/graph.pyx":1675
 *             elif len(reads) >= min_support or info:
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:             # <<<<<<<<<<<<<<
 *                     d["info"] = info
 *                 return d
 */
        }

        /* "dysgu/graph.pyx":1677
 *                 if info:
 *                     d["info"] = info
 *                 return d             # <<<<<<<<<<<<<<
 *             else:
 *                 return
 */
        __Pyx_XDECREF(__pyx_r);
        __Pyx_INCREF(__pyx_v_d);
        __pyx_r = __pyx_v_d;
        goto __pyx_L0;

        /* "dysgu/graph.pyx":1673
 *                 return d
 * 
 *             elif len(reads) >= min_support or info:             # <<<<<<<<<<<<<<
 *                 d = {"parts": [], "s_between": {}, "reads": reads, "s_within": {}, "n2n": n2n}
 *                 if info:
 */
      }

      /* "dysgu/graph.pyx":1679
 *                 return d
 *             else:
 *                 return             # <<<<<<<<<<<<<<
 * 
 *     # Debug:
 */
      /*else*/ {
        __Pyx_XDECREF(__pyx_r);
        __pyx_r = Py_None; __Pyx_INCREF(Py_None);
        goto __pyx_L0;
      }
    }

    /* "dysgu/graph.pyx":1654
 *     support_between, support_within = count_support_between(G, partitions, min_support)
 * 
 *     if len(support_between) == 0 and len(support_within) == 0:             # <<<<<<<<<<<<<<
 *         if not paired_end:
 * 
 */
  }

  /* "dysgu/graph.pyx":1695
 *     #     echo("s_within", support_within)
 * 
 *     d = {"parts": partitions, "s_between": support_between, "reads": reads, "s_within": support_within, "n2n": n2n}             # <<<<<<<<<<<<<<
 *     if info:
 *         d["info"] = info
 */
  __pyx_t_1 = __Pyx_PyDict_NewPresized(5); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1695, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_parts, __pyx_v_partitions) < 0) __PYX_ERR(1, 1695, __pyx_L1_error)
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_between, __pyx_v_support_between) < 0) __PYX_ERR(1, 1695, __pyx_L1_error)
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_reads, __pyx_v_reads) < 0) __PYX_ERR(1, 1695, __pyx_L1_error)
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_s_within, __pyx_v_support_within) < 0) __PYX_ERR(1, 1695, __pyx_L1_error)
  if (PyDict_SetItem(__pyx_t_1, __pyx_n_u_n2n, __pyx_v_n2n) < 0) __PYX_ERR(1, 1695, __pyx_L1_error)
  __pyx_v_d = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1696
 * 
 *     d = {"parts": partitions, "s_between": support_between, "reads": reads, "s_within": support_within, "n2n": n2n}
 *     if info:             # <<<<<<<<<<<<<<
 *         d["info"] = info
 *     return d
 */
  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_v_info); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(1, 1696, __pyx_L1_error)
  if (__pyx_t_3) {

    /* "dysgu/graph.pyx":1697
 *     d = {"parts": partitions, "s_between": support_between, "reads": reads, "s_within": support_within, "n2n": n2n}
 *     if info:
 *         d["info"] = info             # <<<<<<<<<<<<<<
 *     return d
 */
    if (unlikely(PyDict_SetItem(__pyx_v_d, __pyx_n_u_info, __pyx_v_info) < 0)) __PYX_ERR(1, 1697, __pyx_L1_error)

    /* "dysgu/graph.pyx":1696
 * 
 *     d = {"parts": partitions, "s_between": support_between, "reads": reads, "s_within": support_within, "n2n": n2n}
 *     if info:             # <<<<<<<<<<<<<<
 *         d["info"] = info
 *     return d
 */
  }

  /* "dysgu/graph.pyx":1698
 *     if info:
 *         d["info"] = info
 *     return d             # <<<<<<<<<<<<<<
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_d);
  __pyx_r = __pyx_v_d;
  goto __pyx_L0;

  /* "dysgu/graph.pyx":1613
 * 
 * 
 * cpdef proc_component(node_to_name, component, read_buffer, infile, G, int min_support, int procs, int paired_end,             # <<<<<<<<<<<<<<
 *                      sites_index):
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_AddTraceback("dysgu.graph.proc_component", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_n2n);
  __Pyx_XDECREF(__pyx_v_reads);
  __Pyx_XDECREF(__pyx_v_info);
  __Pyx_XDECREF(__pyx_v_key);
  __Pyx_XDECREF(__pyx_v_partitions);
  __Pyx_XDECREF(__pyx_v_support_between);
  __Pyx_XDECREF(__pyx_v_support_within);
  __Pyx_XDECREF(__pyx_v_d);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_5proc_component(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyObject *__pyx_pw_5dysgu_5graph_5proc_component(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_node_to_name = 0;
  PyObject *__pyx_v_component = 0;
  PyObject *__pyx_v_read_buffer = 0;
  PyObject *__pyx_v_infile = 0;
  PyObject *__pyx_v_G = 0;
  int __pyx_v_min_support;
  int __pyx_v_procs;
  int __pyx_v_paired_end;
  PyObject *__pyx_v_sites_index = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("proc_component (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_node_to_name,&__pyx_n_s_component,&__pyx_n_s_read_buffer,&__pyx_n_s_infile,&__pyx_n_s_G,&__pyx_n_s_min_support,&__pyx_n_s_procs,&__pyx_n_s_paired_end,&__pyx_n_s_sites_index,0};
    PyObject* values[9] = {0,0,0,0,0,0,0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
        CYTHON_FALLTHROUGH;
        case  8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
        CYTHON_FALLTHROUGH;
        case  7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
        CYTHON_FALLTHROUGH;
        case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
        CYTHON_FALLTHROUGH;
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_node_to_name)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_component)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 1); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_read_buffer)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 2); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  3:
        if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_infile)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 3); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  4:
        if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_G)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 4); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  5:
        if (likely((values[5] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_min_support)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 5); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  6:
        if (likely((values[6] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_procs)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 6); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  7:
        if (likely((values[7] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_paired_end)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 7); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  8:
        if (likely((values[8] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_sites_index)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, 8); __PYX_ERR(1, 1613, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "proc_component") < 0)) __PYX_ERR(1, 1613, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 9) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
      values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
      values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
      values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
      values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
      values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
      values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
    }
    __pyx_v_node_to_name = values[0];
    __pyx_v_component = values[1];
    __pyx_v_read_buffer = values[2];
    __pyx_v_infile = values[3];
    __pyx_v_G = values[4];
    __pyx_v_min_support = __Pyx_PyInt_As_int(values[5]); if (unlikely((__pyx_v_min_support == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1613, __pyx_L3_error)
    __pyx_v_procs = __Pyx_PyInt_As_int(values[6]); if (unlikely((__pyx_v_procs == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1613, __pyx_L3_error)
    __pyx_v_paired_end = __Pyx_PyInt_As_int(values[7]); if (unlikely((__pyx_v_paired_end == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 1613, __pyx_L3_error)
    __pyx_v_sites_index = values[8];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("proc_component", 1, 9, 9, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(1, 1613, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.proc_component", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_4proc_component(__pyx_self, __pyx_v_node_to_name, __pyx_v_component, __pyx_v_read_buffer, __pyx_v_infile, __pyx_v_G, __pyx_v_min_support, __pyx_v_procs, __pyx_v_paired_end, __pyx_v_sites_index);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_4proc_component(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_node_to_name, PyObject *__pyx_v_component, PyObject *__pyx_v_read_buffer, PyObject *__pyx_v_infile, PyObject *__pyx_v_G, int __pyx_v_min_support, int __pyx_v_procs, int __pyx_v_paired_end, PyObject *__pyx_v_sites_index) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("proc_component", 0);
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __pyx_f_5dysgu_5graph_proc_component(__pyx_v_node_to_name, __pyx_v_component, __pyx_v_read_buffer, __pyx_v_infile, __pyx_v_G, __pyx_v_min_support, __pyx_v_procs, __pyx_v_paired_end, __pyx_v_sites_index, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1613, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("dysgu.graph.proc_component", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __pyx_unpickle_TemplateEdges(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_7__pyx_unpickle_TemplateEdges(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_7__pyx_unpickle_TemplateEdges = {"__pyx_unpickle_TemplateEdges", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_7__pyx_unpickle_TemplateEdges, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_7__pyx_unpickle_TemplateEdges(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v___pyx_type = 0;
  long __pyx_v___pyx_checksum;
  PyObject *__pyx_v___pyx_state = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__pyx_unpickle_TemplateEdges (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
    PyObject* values[3] = {0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_TemplateEdges", 1, 3, 3, 1); __PYX_ERR(0, 1, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_TemplateEdges", 1, 3, 3, 2); __PYX_ERR(0, 1, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_TemplateEdges") < 0)) __PYX_ERR(0, 1, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
    }
    __pyx_v___pyx_type = values[0];
    __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L3_error)
    __pyx_v___pyx_state = values[2];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_TemplateEdges", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 1, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.__pyx_unpickle_TemplateEdges", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_6__pyx_unpickle_TemplateEdges(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_6__pyx_unpickle_TemplateEdges(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_v___pyx_PickleError = 0;
  PyObject *__pyx_v___pyx_result = 0;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_unpickle_TemplateEdges", 0);

  /* "(tree fragment)":4
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0x4a9a3f4, 0x8465993, 0x2f47083):             # <<<<<<<<<<<<<<
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)
 */
  __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = (__Pyx_PySequence_ContainsTF(__pyx_t_1, __pyx_tuple__14, Py_NE)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (__pyx_t_3) {

    /* "(tree fragment)":5
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0x4a9a3f4, 0x8465993, 0x2f47083):
 *         from pickle import PickleError as __pyx_PickleError             # <<<<<<<<<<<<<<
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)
 *     __pyx_result = TemplateEdges.__new__(__pyx_type)
 */
    __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_n_s_PickleError);
    __Pyx_GIVEREF(__pyx_n_s_PickleError);
    PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_PickleError);
    __pyx_t_4 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_1, 0); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_4, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_t_1);
    __pyx_v___pyx_PickleError = __pyx_t_1;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "(tree fragment)":6
 *     if __pyx_checksum not in (0x4a9a3f4, 0x8465993, 0x2f47083):
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)             # <<<<<<<<<<<<<<
 *     __pyx_result = TemplateEdges.__new__(__pyx_type)
 *     if __pyx_state is not None:
 */
    __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_0x_x_vs_0, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_INCREF(__pyx_v___pyx_PickleError);
    __pyx_t_1 = __pyx_v___pyx_PickleError; __pyx_t_6 = NULL;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_1))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_1);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_1, function);
      }
    }
    __pyx_t_4 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_6, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_t_5);
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_Raise(__pyx_t_4, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __PYX_ERR(0, 6, __pyx_L1_error)

    /* "(tree fragment)":4
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0x4a9a3f4, 0x8465993, 0x2f47083):             # <<<<<<<<<<<<<<
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)
 */
  }

  /* "(tree fragment)":7
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)
 *     __pyx_result = TemplateEdges.__new__(__pyx_type)             # <<<<<<<<<<<<<<
 *     if __pyx_state is not None:
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_ptype_5dysgu_5graph_TemplateEdges), __pyx_n_s_new); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 7, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
    __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_1);
    if (likely(__pyx_t_5)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
      __Pyx_INCREF(__pyx_t_5);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_1, function);
    }
  }
  __pyx_t_4 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_5, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_v___pyx_type);
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 7, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v___pyx_result = __pyx_t_4;
  __pyx_t_4 = 0;

  /* "(tree fragment)":8
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)
 *     __pyx_result = TemplateEdges.__new__(__pyx_type)
 *     if __pyx_state is not None:             # <<<<<<<<<<<<<<
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)
 *     return __pyx_result
 */
  __pyx_t_3 = (__pyx_v___pyx_state != Py_None);
  __pyx_t_2 = (__pyx_t_3 != 0);
  if (__pyx_t_2) {

    /* "(tree fragment)":9
 *     __pyx_result = TemplateEdges.__new__(__pyx_type)
 *     if __pyx_state is not None:
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)             # <<<<<<<<<<<<<<
 *     return __pyx_result
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):
 */
    if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(0, 9, __pyx_L1_error)
    __pyx_t_4 = __pyx_f_5dysgu_5graph___pyx_unpickle_TemplateEdges__set_state(((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 9, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "(tree fragment)":8
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)
 *     __pyx_result = TemplateEdges.__new__(__pyx_type)
 *     if __pyx_state is not None:             # <<<<<<<<<<<<<<
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)
 *     return __pyx_result
 */
  }

  /* "(tree fragment)":10
 *     if __pyx_state is not None:
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)
 *     return __pyx_result             # <<<<<<<<<<<<<<
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):
 *     __pyx_result.templates_s = __pyx_state[0]
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v___pyx_result);
  __pyx_r = __pyx_v___pyx_result;
  goto __pyx_L0;

  /* "(tree fragment)":1
 * def __pyx_unpickle_TemplateEdges(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("dysgu.graph.__pyx_unpickle_TemplateEdges", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v___pyx_PickleError);
  __Pyx_XDECREF(__pyx_v___pyx_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":11
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.templates_s = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 */

static PyObject *__pyx_f_5dysgu_5graph___pyx_unpickle_TemplateEdges__set_state(struct __pyx_obj_5dysgu_5graph_TemplateEdges *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  std::unordered_map<std::string,std::vector<int> >  __pyx_t_1;
  int __pyx_t_2;
  Py_ssize_t __pyx_t_3;
  int __pyx_t_4;
  int __pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_unpickle_TemplateEdges__set_state", 0);

  /* "(tree fragment)":12
 *     return __pyx_result
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):
 *     __pyx_result.templates_s = __pyx_state[0]             # <<<<<<<<<<<<<<
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 *         __pyx_result.__dict__.update(__pyx_state[1])
 */
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_1 = __pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___(PyTuple_GET_ITEM(__pyx_v___pyx_state, 0)); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->templates_s = __pyx_t_1;

  /* "(tree fragment)":13
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):
 *     __pyx_result.templates_s = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):             # <<<<<<<<<<<<<<
 *         __pyx_result.__dict__.update(__pyx_state[1])
 */
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
    __PYX_ERR(0, 13, __pyx_L1_error)
  }
  __pyx_t_3 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_3 == ((Py_ssize_t)-1))) __PYX_ERR(0, 13, __pyx_L1_error)
  __pyx_t_4 = ((__pyx_t_3 > 1) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_2 = __pyx_t_4;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_4 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(0, 13, __pyx_L1_error)
  __pyx_t_5 = (__pyx_t_4 != 0);
  __pyx_t_2 = __pyx_t_5;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_2) {

    /* "(tree fragment)":14
 *     __pyx_result.templates_s = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 *         __pyx_result.__dict__.update(__pyx_state[1])             # <<<<<<<<<<<<<<
 */
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __pyx_t_8 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_update); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_8);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    if (unlikely(__pyx_v___pyx_state == Py_None)) {
      PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
      __PYX_ERR(0, 14, __pyx_L1_error)
    }
    __pyx_t_7 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_8))) {
      __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_8);
      if (likely(__pyx_t_7)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_8);
        __Pyx_INCREF(__pyx_t_7);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_8, function);
      }
    }
    __pyx_t_6 = (__pyx_t_7) ? __Pyx_PyObject_Call2Args(__pyx_t_8, __pyx_t_7, PyTuple_GET_ITEM(__pyx_v___pyx_state, 1)) : __Pyx_PyObject_CallOneArg(__pyx_t_8, PyTuple_GET_ITEM(__pyx_v___pyx_state, 1));
    __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
    if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;

    /* "(tree fragment)":13
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):
 *     __pyx_result.templates_s = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):             # <<<<<<<<<<<<<<
 *         __pyx_result.__dict__.update(__pyx_state[1])
 */
  }

  /* "(tree fragment)":11
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.templates_s = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("dysgu.graph.__pyx_unpickle_TemplateEdges__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __pyx_unpickle_NodeName(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */

/* Python wrapper */
static PyObject *__pyx_pw_5dysgu_5graph_9__pyx_unpickle_NodeName(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_5dysgu_5graph_9__pyx_unpickle_NodeName = {"__pyx_unpickle_NodeName", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_9__pyx_unpickle_NodeName, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_5dysgu_5graph_9__pyx_unpickle_NodeName(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v___pyx_type = 0;
  long __pyx_v___pyx_checksum;
  PyObject *__pyx_v___pyx_state = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__pyx_unpickle_NodeName (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
    PyObject* values[3] = {0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_NodeName", 1, 3, 3, 1); __PYX_ERR(0, 1, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_NodeName", 1, 3, 3, 2); __PYX_ERR(0, 1, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_NodeName") < 0)) __PYX_ERR(0, 1, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
    }
    __pyx_v___pyx_type = values[0];
    __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L3_error)
    __pyx_v___pyx_state = values[2];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_NodeName", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 1, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("dysgu.graph.__pyx_unpickle_NodeName", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_5dysgu_5graph_8__pyx_unpickle_NodeName(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_5dysgu_5graph_8__pyx_unpickle_NodeName(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_v___pyx_PickleError = 0;
  PyObject *__pyx_v___pyx_result = 0;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_unpickle_NodeName", 0);

  /* "(tree fragment)":4
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0x411280f, 0x93925dc, 0x12a7387):             # <<<<<<<<<<<<<<
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))" % __pyx_checksum)
 */
  __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = (__Pyx_PySequence_ContainsTF(__pyx_t_1, __pyx_tuple__15, Py_NE)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (__pyx_t_3) {

    /* "(tree fragment)":5
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0x411280f, 0x93925dc, 0x12a7387):
 *         from pickle import PickleError as __pyx_PickleError             # <<<<<<<<<<<<<<
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))" % __pyx_checksum)
 *     __pyx_result = NodeName.__new__(__pyx_type)
 */
    __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_n_s_PickleError);
    __Pyx_GIVEREF(__pyx_n_s_PickleError);
    PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_PickleError);
    __pyx_t_4 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_1, 0); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_4, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_t_1);
    __pyx_v___pyx_PickleError = __pyx_t_1;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "(tree fragment)":6
 *     if __pyx_checksum not in (0x411280f, 0x93925dc, 0x12a7387):
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))" % __pyx_checksum)             # <<<<<<<<<<<<<<
 *     __pyx_result = NodeName.__new__(__pyx_type)
 *     if __pyx_state is not None:
 */
    __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_2, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_INCREF(__pyx_v___pyx_PickleError);
    __pyx_t_1 = __pyx_v___pyx_PickleError; __pyx_t_6 = NULL;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_1))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_1);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_1, function);
      }
    }
    __pyx_t_4 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_6, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_t_5);
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_Raise(__pyx_t_4, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __PYX_ERR(0, 6, __pyx_L1_error)

    /* "(tree fragment)":4
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0x411280f, 0x93925dc, 0x12a7387):             # <<<<<<<<<<<<<<
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))" % __pyx_checksum)
 */
  }

  /* "(tree fragment)":7
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))" % __pyx_checksum)
 *     __pyx_result = NodeName.__new__(__pyx_type)             # <<<<<<<<<<<<<<
 *     if __pyx_state is not None:
 *         __pyx_unpickle_NodeName__set_state(<NodeName> __pyx_result, __pyx_state)
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_ptype_5dysgu_5graph_NodeName), __pyx_n_s_new); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 7, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
    __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_1);
    if (likely(__pyx_t_5)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
      __Pyx_INCREF(__pyx_t_5);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_1, function);
    }
  }
  __pyx_t_4 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_5, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_v___pyx_type);
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 7, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v___pyx_result = __pyx_t_4;
  __pyx_t_4 = 0;

  /* "(tree fragment)":8
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))" % __pyx_checksum)
 *     __pyx_result = NodeName.__new__(__pyx_type)
 *     if __pyx_state is not None:             # <<<<<<<<<<<<<<
 *         __pyx_unpickle_NodeName__set_state(<NodeName> __pyx_result, __pyx_state)
 *     return __pyx_result
 */
  __pyx_t_3 = (__pyx_v___pyx_state != Py_None);
  __pyx_t_2 = (__pyx_t_3 != 0);
  if (__pyx_t_2) {

    /* "(tree fragment)":9
 *     __pyx_result = NodeName.__new__(__pyx_type)
 *     if __pyx_state is not None:
 *         __pyx_unpickle_NodeName__set_state(<NodeName> __pyx_result, __pyx_state)             # <<<<<<<<<<<<<<
 *     return __pyx_result
 * cdef __pyx_unpickle_NodeName__set_state(NodeName __pyx_result, tuple __pyx_state):
 */
    if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(0, 9, __pyx_L1_error)
    __pyx_t_4 = __pyx_f_5dysgu_5graph___pyx_unpickle_NodeName__set_state(((struct __pyx_obj_5dysgu_5graph_NodeName *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 9, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "(tree fragment)":8
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x411280f, 0x93925dc, 0x12a7387) = (chrom, cigar_index, event_pos, flag, hash_name, pos, tell))" % __pyx_checksum)
 *     __pyx_result = NodeName.__new__(__pyx_type)
 *     if __pyx_state is not None:             # <<<<<<<<<<<<<<
 *         __pyx_unpickle_NodeName__set_state(<NodeName> __pyx_result, __pyx_state)
 *     return __pyx_result
 */
  }

  /* "(tree fragment)":10
 *     if __pyx_state is not None:
 *         __pyx_unpickle_NodeName__set_state(<NodeName> __pyx_result, __pyx_state)
 *     return __pyx_result             # <<<<<<<<<<<<<<
 * cdef __pyx_unpickle_NodeName__set_state(NodeName __pyx_result, tuple __pyx_state):
 *     __pyx_result.chrom = __pyx_state[0]; __pyx_result.cigar_index = __pyx_state[1]; __pyx_result.event_pos = __pyx_state[2]; __pyx_result.flag = __pyx_state[3]; __pyx_result.hash_name = __pyx_state[4]; __pyx_result.pos = __pyx_state[5]; __pyx_result.tell = __pyx_state[6]
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v___pyx_result);
  __pyx_r = __pyx_v___pyx_result;
  goto __pyx_L0;

  /* "(tree fragment)":1
 * def __pyx_unpickle_NodeName(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("dysgu.graph.__pyx_unpickle_NodeName", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v___pyx_PickleError);
  __Pyx_XDECREF(__pyx_v___pyx_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":11
 *         __pyx_unpickle_NodeName__set_state(<NodeName> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_NodeName__set_state(NodeName __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.chrom = __pyx_state[0]; __pyx_result.cigar_index = __pyx_state[1]; __pyx_result.event_pos = __pyx_state[2]; __pyx_result.flag = __pyx_state[3]; __pyx_result.hash_name = __pyx_state[4]; __pyx_result.pos = __pyx_state[5]; __pyx_result.tell = __pyx_state[6]
 *     if len(__pyx_state) > 7 and hasattr(__pyx_result, '__dict__'):
 */

static PyObject *__pyx_f_5dysgu_5graph___pyx_unpickle_NodeName__set_state(struct __pyx_obj_5dysgu_5graph_NodeName *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  uint16_t __pyx_t_1;
  int32_t __pyx_t_2;
  uint32_t __pyx_t_3;
  uint64_t __pyx_t_4;
  int __pyx_t_5;
  Py_ssize_t __pyx_t_6;
  int __pyx_t_7;
  int __pyx_t_8;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  PyObject *__pyx_t_11 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_unpickle_NodeName__set_state", 0);

  /* "(tree fragment)":12
 *     return __pyx_result
 * cdef __pyx_unpickle_NodeName__set_state(NodeName __pyx_result, tuple __pyx_state):
 *     __pyx_result.chrom = __pyx_state[0]; __pyx_result.cigar_index = __pyx_state[1]; __pyx_result.event_pos = __pyx_state[2]; __pyx_result.flag = __pyx_state[3]; __pyx_result.hash_name = __pyx_state[4]; __pyx_result.pos = __pyx_state[5]; __pyx_result.tell = __pyx_state[6]             # <<<<<<<<<<<<<<
 *     if len(__pyx_state) > 7 and hasattr(__pyx_result, '__dict__'):
 *         __pyx_result.__dict__.update(__pyx_state[7])
 */
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_1 = __Pyx_PyInt_As_uint16_t(PyTuple_GET_ITEM(__pyx_v___pyx_state, 0)); if (unlikely((__pyx_t_1 == ((uint16_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->chrom = __pyx_t_1;
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_2 = __Pyx_PyInt_As_int32_t(PyTuple_GET_ITEM(__pyx_v___pyx_state, 1)); if (unlikely((__pyx_t_2 == ((int32_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->cigar_index = __pyx_t_2;
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_3 = __Pyx_PyInt_As_uint32_t(PyTuple_GET_ITEM(__pyx_v___pyx_state, 2)); if (unlikely((__pyx_t_3 == ((uint32_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->event_pos = __pyx_t_3;
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_1 = __Pyx_PyInt_As_uint16_t(PyTuple_GET_ITEM(__pyx_v___pyx_state, 3)); if (unlikely((__pyx_t_1 == ((uint16_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->flag = __pyx_t_1;
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_4 = __Pyx_PyInt_As_uint64_t(PyTuple_GET_ITEM(__pyx_v___pyx_state, 4)); if (unlikely((__pyx_t_4 == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->hash_name = __pyx_t_4;
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_3 = __Pyx_PyInt_As_uint32_t(PyTuple_GET_ITEM(__pyx_v___pyx_state, 5)); if (unlikely((__pyx_t_3 == ((uint32_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->pos = __pyx_t_3;
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_4 = __Pyx_PyInt_As_uint64_t(PyTuple_GET_ITEM(__pyx_v___pyx_state, 6)); if (unlikely((__pyx_t_4 == ((uint64_t)-1)) && PyErr_Occurred())) __PYX_ERR(0, 12, __pyx_L1_error)
  __pyx_v___pyx_result->tell = __pyx_t_4;

  /* "(tree fragment)":13
 * cdef __pyx_unpickle_NodeName__set_state(NodeName __pyx_result, tuple __pyx_state):
 *     __pyx_result.chrom = __pyx_state[0]; __pyx_result.cigar_index = __pyx_state[1]; __pyx_result.event_pos = __pyx_state[2]; __pyx_result.flag = __pyx_state[3]; __pyx_result.hash_name = __pyx_state[4]; __pyx_result.pos = __pyx_state[5]; __pyx_result.tell = __pyx_state[6]
 *     if len(__pyx_state) > 7 and hasattr(__pyx_result, '__dict__'):             # <<<<<<<<<<<<<<
 *         __pyx_result.__dict__.update(__pyx_state[7])
 */
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
    __PYX_ERR(0, 13, __pyx_L1_error)
  }
  __pyx_t_6 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_6 == ((Py_ssize_t)-1))) __PYX_ERR(0, 13, __pyx_L1_error)
  __pyx_t_7 = ((__pyx_t_6 > 7) != 0);
  if (__pyx_t_7) {
  } else {
    __pyx_t_5 = __pyx_t_7;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_7 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 13, __pyx_L1_error)
  __pyx_t_8 = (__pyx_t_7 != 0);
  __pyx_t_5 = __pyx_t_8;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_5) {

    /* "(tree fragment)":14
 *     __pyx_result.chrom = __pyx_state[0]; __pyx_result.cigar_index = __pyx_state[1]; __pyx_result.event_pos = __pyx_state[2]; __pyx_result.flag = __pyx_state[3]; __pyx_result.hash_name = __pyx_state[4]; __pyx_result.pos = __pyx_state[5]; __pyx_result.tell = __pyx_state[6]
 *     if len(__pyx_state) > 7 and hasattr(__pyx_result, '__dict__'):
 *         __pyx_result.__dict__.update(__pyx_state[7])             # <<<<<<<<<<<<<<
 */
    __pyx_t_10 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_10);
    __pyx_t_11 = __Pyx_PyObject_GetAttrStr(__pyx_t_10, __pyx_n_s_update); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_11);
    __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
    if (unlikely(__pyx_v___pyx_state == Py_None)) {
      PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
      __PYX_ERR(0, 14, __pyx_L1_error)
    }
    __pyx_t_10 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_11))) {
      __pyx_t_10 = PyMethod_GET_SELF(__pyx_t_11);
      if (likely(__pyx_t_10)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_11);
        __Pyx_INCREF(__pyx_t_10);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_11, function);
      }
    }
    __pyx_t_9 = (__pyx_t_10) ? __Pyx_PyObject_Call2Args(__pyx_t_11, __pyx_t_10, PyTuple_GET_ITEM(__pyx_v___pyx_state, 7)) : __Pyx_PyObject_CallOneArg(__pyx_t_11, PyTuple_GET_ITEM(__pyx_v___pyx_state, 7));
    __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
    if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_9);
    __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
    __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;

    /* "(tree fragment)":13
 * cdef __pyx_unpickle_NodeName__set_state(NodeName __pyx_result, tuple __pyx_state):
 *     __pyx_result.chrom = __pyx_state[0]; __pyx_result.cigar_index = __pyx_state[1]; __pyx_result.event_pos = __pyx_state[2]; __pyx_result.flag = __pyx_state[3]; __pyx_result.hash_name = __pyx_state[4]; __pyx_result.pos = __pyx_state[5]; __pyx_result.tell = __pyx_state[6]
 *     if len(__pyx_state) > 7 and hasattr(__pyx_result, '__dict__'):             # <<<<<<<<<<<<<<
 *         __pyx_result.__dict__.update(__pyx_state[7])
 */
  }

  /* "(tree fragment)":11
 *         __pyx_unpickle_NodeName__set_state(<NodeName> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_NodeName__set_state(NodeName __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.chrom = __pyx_state[0]; __pyx_result.cigar_index = __pyx_state[1]; __pyx_result.event_pos = __pyx_state[2]; __pyx_result.flag = __pyx_state[3]; __pyx_result.hash_name = __pyx_state[4]; __pyx_result.pos = __pyx_state[5]; __pyx_result.tell = __pyx_state[6]
 *     if len(__pyx_state) > 7 and hasattr(__pyx_result, '__dict__'):
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_XDECREF(__pyx_t_11);
  __Pyx_AddTraceback("dysgu.graph.__pyx_unpickle_NodeName__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":734
 * ctypedef npy_cdouble     complex_t
 * 
 * cdef inline object PyArray_MultiIterNew1(a):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(1, <void*>a)
 * 
 */

static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__pyx_v_a) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":735
 * 
 * cdef inline object PyArray_MultiIterNew1(a):
 *     return PyArray_MultiIterNew(1, <void*>a)             # <<<<<<<<<<<<<<
 * 
 * cdef inline object PyArray_MultiIterNew2(a, b):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyArray_MultiIterNew(1, ((void *)__pyx_v_a)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 735, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":734
 * ctypedef npy_cdouble     complex_t
 * 
 * cdef inline object PyArray_MultiIterNew1(a):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(1, <void*>a)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("numpy.PyArray_MultiIterNew1", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":737
 *     return PyArray_MultiIterNew(1, <void*>a)
 * 
 * cdef inline object PyArray_MultiIterNew2(a, b):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(2, <void*>a, <void*>b)
 * 
 */

static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__pyx_v_a, PyObject *__pyx_v_b) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":738
 * 
 * cdef inline object PyArray_MultiIterNew2(a, b):
 *     return PyArray_MultiIterNew(2, <void*>a, <void*>b)             # <<<<<<<<<<<<<<
 * 
 * cdef inline object PyArray_MultiIterNew3(a, b, c):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyArray_MultiIterNew(2, ((void *)__pyx_v_a), ((void *)__pyx_v_b)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 738, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":737
 *     return PyArray_MultiIterNew(1, <void*>a)
 * 
 * cdef inline object PyArray_MultiIterNew2(a, b):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(2, <void*>a, <void*>b)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("numpy.PyArray_MultiIterNew2", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":740
 *     return PyArray_MultiIterNew(2, <void*>a, <void*>b)
 * 
 * cdef inline object PyArray_MultiIterNew3(a, b, c):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
 * 
 */

static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":741
 * 
 * cdef inline object PyArray_MultiIterNew3(a, b, c):
 *     return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)             # <<<<<<<<<<<<<<
 * 
 * cdef inline object PyArray_MultiIterNew4(a, b, c, d):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyArray_MultiIterNew(3, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 741, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":740
 *     return PyArray_MultiIterNew(2, <void*>a, <void*>b)
 * 
 * cdef inline object PyArray_MultiIterNew3(a, b, c):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("numpy.PyArray_MultiIterNew3", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":743
 *     return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
 * 
 * cdef inline object PyArray_MultiIterNew4(a, b, c, d):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
 * 
 */

static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":744
 * 
 * cdef inline object PyArray_MultiIterNew4(a, b, c, d):
 *     return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)             # <<<<<<<<<<<<<<
 * 
 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyArray_MultiIterNew(4, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 744, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":743
 *     return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
 * 
 * cdef inline object PyArray_MultiIterNew4(a, b, c, d):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("numpy.PyArray_MultiIterNew4", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":746
 *     return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
 * 
 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
 * 
 */

static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__pyx_v_a, PyObject *__pyx_v_b, PyObject *__pyx_v_c, PyObject *__pyx_v_d, PyObject *__pyx_v_e) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":747
 * 
 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
 *     return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)             # <<<<<<<<<<<<<<
 * 
 * cdef inline tuple PyDataType_SHAPE(dtype d):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyArray_MultiIterNew(5, ((void *)__pyx_v_a), ((void *)__pyx_v_b), ((void *)__pyx_v_c), ((void *)__pyx_v_d), ((void *)__pyx_v_e)); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 747, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":746
 *     return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
 * 
 * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):             # <<<<<<<<<<<<<<
 *     return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("numpy.PyArray_MultiIterNew5", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":749
 *     return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
 * 
 * cdef inline tuple PyDataType_SHAPE(dtype d):             # <<<<<<<<<<<<<<
 *     if PyDataType_HASSUBARRAY(d):
 *         return <tuple>d.subarray.shape
 */

static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__pyx_v_d) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("PyDataType_SHAPE", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":750
 * 
 * cdef inline tuple PyDataType_SHAPE(dtype d):
 *     if PyDataType_HASSUBARRAY(d):             # <<<<<<<<<<<<<<
 *         return <tuple>d.subarray.shape
 *     else:
 */
  __pyx_t_1 = (PyDataType_HASSUBARRAY(__pyx_v_d) != 0);
  if (__pyx_t_1) {

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":751
 * cdef inline tuple PyDataType_SHAPE(dtype d):
 *     if PyDataType_HASSUBARRAY(d):
 *         return <tuple>d.subarray.shape             # <<<<<<<<<<<<<<
 *     else:
 *         return ()
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(((PyObject*)__pyx_v_d->subarray->shape));
    __pyx_r = ((PyObject*)__pyx_v_d->subarray->shape);
    goto __pyx_L0;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":750
 * 
 * cdef inline tuple PyDataType_SHAPE(dtype d):
 *     if PyDataType_HASSUBARRAY(d):             # <<<<<<<<<<<<<<
 *         return <tuple>d.subarray.shape
 *     else:
 */
  }

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":753
 *         return <tuple>d.subarray.shape
 *     else:
 *         return ()             # <<<<<<<<<<<<<<
 * 
 * 
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(__pyx_empty_tuple);
    __pyx_r = __pyx_empty_tuple;
    goto __pyx_L0;
  }

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":749
 *     return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
 * 
 * cdef inline tuple PyDataType_SHAPE(dtype d):             # <<<<<<<<<<<<<<
 *     if PyDataType_HASSUBARRAY(d):
 *         return <tuple>d.subarray.shape
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":928
 *     int _import_umath() except -1
 * 
 * cdef inline void set_array_base(ndarray arr, object base):             # <<<<<<<<<<<<<<
 *     Py_INCREF(base) # important to do this before stealing the reference below!
 *     PyArray_SetBaseObject(arr, base)
 */

static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_arr, PyObject *__pyx_v_base) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("set_array_base", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":929
 * 
 * cdef inline void set_array_base(ndarray arr, object base):
 *     Py_INCREF(base) # important to do this before stealing the reference below!             # <<<<<<<<<<<<<<
 *     PyArray_SetBaseObject(arr, base)
 * 
 */
  Py_INCREF(__pyx_v_base);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":930
 * cdef inline void set_array_base(ndarray arr, object base):
 *     Py_INCREF(base) # important to do this before stealing the reference below!
 *     PyArray_SetBaseObject(arr, base)             # <<<<<<<<<<<<<<
 * 
 * cdef inline object get_array_base(ndarray arr):
 */
  (void)(PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base));

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":928
 *     int _import_umath() except -1
 * 
 * cdef inline void set_array_base(ndarray arr, object base):             # <<<<<<<<<<<<<<
 *     Py_INCREF(base) # important to do this before stealing the reference below!
 *     PyArray_SetBaseObject(arr, base)
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":932
 *     PyArray_SetBaseObject(arr, base)
 * 
 * cdef inline object get_array_base(ndarray arr):             # <<<<<<<<<<<<<<
 *     base = PyArray_BASE(arr)
 *     if base is NULL:
 */

static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__pyx_v_arr) {
  PyObject *__pyx_v_base;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("get_array_base", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":933
 * 
 * cdef inline object get_array_base(ndarray arr):
 *     base = PyArray_BASE(arr)             # <<<<<<<<<<<<<<
 *     if base is NULL:
 *         return None
 */
  __pyx_v_base = PyArray_BASE(__pyx_v_arr);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":934
 * cdef inline object get_array_base(ndarray arr):
 *     base = PyArray_BASE(arr)
 *     if base is NULL:             # <<<<<<<<<<<<<<
 *         return None
 *     return <object>base
 */
  __pyx_t_1 = ((__pyx_v_base == NULL) != 0);
  if (__pyx_t_1) {

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":935
 *     base = PyArray_BASE(arr)
 *     if base is NULL:
 *         return None             # <<<<<<<<<<<<<<
 *     return <object>base
 * 
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_r = Py_None; __Pyx_INCREF(Py_None);
    goto __pyx_L0;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":934
 * cdef inline object get_array_base(ndarray arr):
 *     base = PyArray_BASE(arr)
 *     if base is NULL:             # <<<<<<<<<<<<<<
 *         return None
 *     return <object>base
 */
  }

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":936
 *     if base is NULL:
 *         return None
 *     return <object>base             # <<<<<<<<<<<<<<
 * 
 * # Versions of the import_* functions which are more suitable for
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(((PyObject *)__pyx_v_base));
  __pyx_r = ((PyObject *)__pyx_v_base);
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":932
 *     PyArray_SetBaseObject(arr, base)
 * 
 * cdef inline object get_array_base(ndarray arr):             # <<<<<<<<<<<<<<
 *     base = PyArray_BASE(arr)
 *     if base is NULL:
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":940
 * # Versions of the import_* functions which are more suitable for
 * # Cython code.
 * cdef inline int import_array() except -1:             # <<<<<<<<<<<<<<
 *     try:
 *         __pyx_import_array()
 */

static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("import_array", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":941
 * # Cython code.
 * cdef inline int import_array() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         __pyx_import_array()
 *     except Exception:
 */
  {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ExceptionSave(&__pyx_t_1, &__pyx_t_2, &__pyx_t_3);
    __Pyx_XGOTREF(__pyx_t_1);
    __Pyx_XGOTREF(__pyx_t_2);
    __Pyx_XGOTREF(__pyx_t_3);
    /*try:*/ {

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":942
 * cdef inline int import_array() except -1:
 *     try:
 *         __pyx_import_array()             # <<<<<<<<<<<<<<
 *     except Exception:
 *         raise ImportError("numpy.core.multiarray failed to import")
 */
      __pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 942, __pyx_L3_error)

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":941
 * # Cython code.
 * cdef inline int import_array() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         __pyx_import_array()
 *     except Exception:
 */
    }
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
    goto __pyx_L8_try_end;
    __pyx_L3_error:;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":943
 *     try:
 *         __pyx_import_array()
 *     except Exception:             # <<<<<<<<<<<<<<
 *         raise ImportError("numpy.core.multiarray failed to import")
 * 
 */
    __pyx_t_4 = __Pyx_PyErr_ExceptionMatches(((PyObject *)(&((PyTypeObject*)PyExc_Exception)[0])));
    if (__pyx_t_4) {
      __Pyx_AddTraceback("numpy.import_array", __pyx_clineno, __pyx_lineno, __pyx_filename);
      if (__Pyx_GetException(&__pyx_t_5, &__pyx_t_6, &__pyx_t_7) < 0) __PYX_ERR(2, 943, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_GOTREF(__pyx_t_7);

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":944
 *         __pyx_import_array()
 *     except Exception:
 *         raise ImportError("numpy.core.multiarray failed to import")             # <<<<<<<<<<<<<<
 * 
 * cdef inline int import_umath() except -1:
 */
      __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__16, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 944, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_8);
      __Pyx_Raise(__pyx_t_8, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __PYX_ERR(2, 944, __pyx_L5_except_error)
    }
    goto __pyx_L5_except_error;
    __pyx_L5_except_error:;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":941
 * # Cython code.
 * cdef inline int import_array() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         __pyx_import_array()
 *     except Exception:
 */
    __Pyx_XGIVEREF(__pyx_t_1);
    __Pyx_XGIVEREF(__pyx_t_2);
    __Pyx_XGIVEREF(__pyx_t_3);
    __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
    goto __pyx_L1_error;
    __pyx_L8_try_end:;
  }

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":940
 * # Versions of the import_* functions which are more suitable for
 * # Cython code.
 * cdef inline int import_array() except -1:             # <<<<<<<<<<<<<<
 *     try:
 *         __pyx_import_array()
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("numpy.import_array", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":946
 *         raise ImportError("numpy.core.multiarray failed to import")
 * 
 * cdef inline int import_umath() except -1:             # <<<<<<<<<<<<<<
 *     try:
 *         _import_umath()
 */

static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("import_umath", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":947
 * 
 * cdef inline int import_umath() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         _import_umath()
 *     except Exception:
 */
  {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ExceptionSave(&__pyx_t_1, &__pyx_t_2, &__pyx_t_3);
    __Pyx_XGOTREF(__pyx_t_1);
    __Pyx_XGOTREF(__pyx_t_2);
    __Pyx_XGOTREF(__pyx_t_3);
    /*try:*/ {

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":948
 * cdef inline int import_umath() except -1:
 *     try:
 *         _import_umath()             # <<<<<<<<<<<<<<
 *     except Exception:
 *         raise ImportError("numpy.core.umath failed to import")
 */
      __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 948, __pyx_L3_error)

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":947
 * 
 * cdef inline int import_umath() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         _import_umath()
 *     except Exception:
 */
    }
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
    goto __pyx_L8_try_end;
    __pyx_L3_error:;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":949
 *     try:
 *         _import_umath()
 *     except Exception:             # <<<<<<<<<<<<<<
 *         raise ImportError("numpy.core.umath failed to import")
 * 
 */
    __pyx_t_4 = __Pyx_PyErr_ExceptionMatches(((PyObject *)(&((PyTypeObject*)PyExc_Exception)[0])));
    if (__pyx_t_4) {
      __Pyx_AddTraceback("numpy.import_umath", __pyx_clineno, __pyx_lineno, __pyx_filename);
      if (__Pyx_GetException(&__pyx_t_5, &__pyx_t_6, &__pyx_t_7) < 0) __PYX_ERR(2, 949, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_GOTREF(__pyx_t_7);

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":950
 *         _import_umath()
 *     except Exception:
 *         raise ImportError("numpy.core.umath failed to import")             # <<<<<<<<<<<<<<
 * 
 * cdef inline int import_ufunc() except -1:
 */
      __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__17, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 950, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_8);
      __Pyx_Raise(__pyx_t_8, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __PYX_ERR(2, 950, __pyx_L5_except_error)
    }
    goto __pyx_L5_except_error;
    __pyx_L5_except_error:;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":947
 * 
 * cdef inline int import_umath() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         _import_umath()
 *     except Exception:
 */
    __Pyx_XGIVEREF(__pyx_t_1);
    __Pyx_XGIVEREF(__pyx_t_2);
    __Pyx_XGIVEREF(__pyx_t_3);
    __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
    goto __pyx_L1_error;
    __pyx_L8_try_end:;
  }

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":946
 *         raise ImportError("numpy.core.multiarray failed to import")
 * 
 * cdef inline int import_umath() except -1:             # <<<<<<<<<<<<<<
 *     try:
 *         _import_umath()
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("numpy.import_umath", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":952
 *         raise ImportError("numpy.core.umath failed to import")
 * 
 * cdef inline int import_ufunc() except -1:             # <<<<<<<<<<<<<<
 *     try:
 *         _import_umath()
 */

static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("import_ufunc", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":953
 * 
 * cdef inline int import_ufunc() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         _import_umath()
 *     except Exception:
 */
  {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ExceptionSave(&__pyx_t_1, &__pyx_t_2, &__pyx_t_3);
    __Pyx_XGOTREF(__pyx_t_1);
    __Pyx_XGOTREF(__pyx_t_2);
    __Pyx_XGOTREF(__pyx_t_3);
    /*try:*/ {

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":954
 * cdef inline int import_ufunc() except -1:
 *     try:
 *         _import_umath()             # <<<<<<<<<<<<<<
 *     except Exception:
 *         raise ImportError("numpy.core.umath failed to import")
 */
      __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 954, __pyx_L3_error)

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":953
 * 
 * cdef inline int import_ufunc() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         _import_umath()
 *     except Exception:
 */
    }
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
    goto __pyx_L8_try_end;
    __pyx_L3_error:;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":955
 *     try:
 *         _import_umath()
 *     except Exception:             # <<<<<<<<<<<<<<
 *         raise ImportError("numpy.core.umath failed to import")
 * 
 */
    __pyx_t_4 = __Pyx_PyErr_ExceptionMatches(((PyObject *)(&((PyTypeObject*)PyExc_Exception)[0])));
    if (__pyx_t_4) {
      __Pyx_AddTraceback("numpy.import_ufunc", __pyx_clineno, __pyx_lineno, __pyx_filename);
      if (__Pyx_GetException(&__pyx_t_5, &__pyx_t_6, &__pyx_t_7) < 0) __PYX_ERR(2, 955, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_GOTREF(__pyx_t_7);

      /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":956
 *         _import_umath()
 *     except Exception:
 *         raise ImportError("numpy.core.umath failed to import")             # <<<<<<<<<<<<<<
 * 
 * cdef extern from *:
 */
      __pyx_t_8 = __Pyx_PyObject_Call(__pyx_builtin_ImportError, __pyx_tuple__17, NULL); if (unlikely(!__pyx_t_8)) __PYX_ERR(2, 956, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_8);
      __Pyx_Raise(__pyx_t_8, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
      __PYX_ERR(2, 956, __pyx_L5_except_error)
    }
    goto __pyx_L5_except_error;
    __pyx_L5_except_error:;

    /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":953
 * 
 * cdef inline int import_ufunc() except -1:
 *     try:             # <<<<<<<<<<<<<<
 *         _import_umath()
 *     except Exception:
 */
    __Pyx_XGIVEREF(__pyx_t_1);
    __Pyx_XGIVEREF(__pyx_t_2);
    __Pyx_XGIVEREF(__pyx_t_3);
    __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
    goto __pyx_L1_error;
    __pyx_L8_try_end:;
  }

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":952
 *         raise ImportError("numpy.core.umath failed to import")
 * 
 * cdef inline int import_ufunc() except -1:             # <<<<<<<<<<<<<<
 *     try:
 *         _import_umath()
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("numpy.import_ufunc", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":966
 * 
 * 
 * cdef inline bint is_timedelta64_object(object obj):             # <<<<<<<<<<<<<<
 *     """
 *     Cython equivalent of `isinstance(obj, np.timedelta64)`
 */

static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("is_timedelta64_object", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":978
 *     bool
 *     """
 *     return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":966
 * 
 * 
 * cdef inline bint is_timedelta64_object(object obj):             # <<<<<<<<<<<<<<
 *     """
 *     Cython equivalent of `isinstance(obj, np.timedelta64)`
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":981
 * 
 * 
 * cdef inline bint is_datetime64_object(object obj):             # <<<<<<<<<<<<<<
 *     """
 *     Cython equivalent of `isinstance(obj, np.datetime64)`
 */

static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("is_datetime64_object", 0);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":993
 *     bool
 *     """
 *     return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":981
 * 
 * 
 * cdef inline bint is_datetime64_object(object obj):             # <<<<<<<<<<<<<<
 *     """
 *     Cython equivalent of `isinstance(obj, np.datetime64)`
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":996
 * 
 * 
 * cdef inline npy_datetime get_datetime64_value(object obj) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     returns the int64 value underlying scalar numpy datetime64 object
 */

static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
  npy_datetime __pyx_r;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":1003
 *     also needed.  That can be found using `get_datetime64_unit`.
 *     """
 *     return (<PyDatetimeScalarObject*>obj).obval             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":996
 * 
 * 
 * cdef inline npy_datetime get_datetime64_value(object obj) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     returns the int64 value underlying scalar numpy datetime64 object
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":1006
 * 
 * 
 * cdef inline npy_timedelta get_timedelta64_value(object obj) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     returns the int64 value underlying scalar numpy timedelta64 object
 */

static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
  npy_timedelta __pyx_r;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":1010
 *     returns the int64 value underlying scalar numpy timedelta64 object
 *     """
 *     return (<PyTimedeltaScalarObject*>obj).obval             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":1006
 * 
 * 
 * cdef inline npy_timedelta get_timedelta64_value(object obj) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     returns the int64 value underlying scalar numpy timedelta64 object
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":1013
 * 
 * 
 * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     returns the unit part of the dtype for a numpy datetime64 object.
 */

static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
  NPY_DATETIMEUNIT __pyx_r;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":1017
 *     returns the unit part of the dtype for a numpy datetime64 object.
 *     """
 *     return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base             # <<<<<<<<<<<<<<
 */
  __pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
  goto __pyx_L0;

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":1013
 * 
 * 
 * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     returns the unit part of the dtype for a numpy datetime64 object.
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "array.pxd":93
 *             __data_union data
 * 
 *         def __getbuffer__(self, Py_buffer* info, int flags):             # <<<<<<<<<<<<<<
 *             # This implementation of getbuffer is geared towards Cython
 *             # requirements, and does not yet fulfill the PEP.
 */

/* Python wrapper */
static CYTHON_UNUSED int __pyx_pw_7cpython_5array_5array_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static CYTHON_UNUSED int __pyx_pw_7cpython_5array_5array_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0);
  __pyx_r = __pyx_pf_7cpython_5array_5array___getbuffer__(((arrayobject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags) {
  PyObject *__pyx_v_item_count = NULL;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  char *__pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  Py_ssize_t __pyx_t_5;
  int __pyx_t_6;
  char __pyx_t_7;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  if (__pyx_v_info == NULL) {
    PyErr_SetString(PyExc_BufferError, "PyObject_GetBuffer: view==NULL argument is obsolete");
    return -1;
  }
  __Pyx_RefNannySetupContext("__getbuffer__", 0);
  __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None);
  __Pyx_GIVEREF(__pyx_v_info->obj);

  /* "array.pxd":98
 *             # In particular strided access is always provided regardless
 *             # of flags
 *             item_count = Py_SIZE(self)             # <<<<<<<<<<<<<<
 * 
 *             info.suboffsets = NULL
 */
  __pyx_t_1 = PyInt_FromSsize_t(Py_SIZE(((PyObject *)__pyx_v_self))); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 98, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_item_count = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "array.pxd":100
 *             item_count = Py_SIZE(self)
 * 
 *             info.suboffsets = NULL             # <<<<<<<<<<<<<<
 *             info.buf = self.data.as_chars
 *             info.readonly = 0
 */
  __pyx_v_info->suboffsets = NULL;

  /* "array.pxd":101
 * 
 *             info.suboffsets = NULL
 *             info.buf = self.data.as_chars             # <<<<<<<<<<<<<<
 *             info.readonly = 0
 *             info.ndim = 1
 */
  __pyx_t_2 = __pyx_v_self->data.as_chars;
  __pyx_v_info->buf = __pyx_t_2;

  /* "array.pxd":102
 *             info.suboffsets = NULL
 *             info.buf = self.data.as_chars
 *             info.readonly = 0             # <<<<<<<<<<<<<<
 *             info.ndim = 1
 *             info.itemsize = self.ob_descr.itemsize   # e.g. sizeof(float)
 */
  __pyx_v_info->readonly = 0;

  /* "array.pxd":103
 *             info.buf = self.data.as_chars
 *             info.readonly = 0
 *             info.ndim = 1             # <<<<<<<<<<<<<<
 *             info.itemsize = self.ob_descr.itemsize   # e.g. sizeof(float)
 *             info.len = info.itemsize * item_count
 */
  __pyx_v_info->ndim = 1;

  /* "array.pxd":104
 *             info.readonly = 0
 *             info.ndim = 1
 *             info.itemsize = self.ob_descr.itemsize   # e.g. sizeof(float)             # <<<<<<<<<<<<<<
 *             info.len = info.itemsize * item_count
 * 
 */
  __pyx_t_3 = __pyx_v_self->ob_descr->itemsize;
  __pyx_v_info->itemsize = __pyx_t_3;

  /* "array.pxd":105
 *             info.ndim = 1
 *             info.itemsize = self.ob_descr.itemsize   # e.g. sizeof(float)
 *             info.len = info.itemsize * item_count             # <<<<<<<<<<<<<<
 * 
 *             info.shape = <Py_ssize_t*> PyObject_Malloc(sizeof(Py_ssize_t) + 2)
 */
  __pyx_t_1 = PyInt_FromSsize_t(__pyx_v_info->itemsize); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 105, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_4 = PyNumber_Multiply(__pyx_t_1, __pyx_v_item_count); if (unlikely(!__pyx_t_4)) __PYX_ERR(3, 105, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_5 = __Pyx_PyIndex_AsSsize_t(__pyx_t_4); if (unlikely((__pyx_t_5 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(3, 105, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_v_info->len = __pyx_t_5;

  /* "array.pxd":107
 *             info.len = info.itemsize * item_count
 * 
 *             info.shape = <Py_ssize_t*> PyObject_Malloc(sizeof(Py_ssize_t) + 2)             # <<<<<<<<<<<<<<
 *             if not info.shape:
 *                 raise MemoryError()
 */
  __pyx_v_info->shape = ((Py_ssize_t *)PyObject_Malloc(((sizeof(Py_ssize_t)) + 2)));

  /* "array.pxd":108
 * 
 *             info.shape = <Py_ssize_t*> PyObject_Malloc(sizeof(Py_ssize_t) + 2)
 *             if not info.shape:             # <<<<<<<<<<<<<<
 *                 raise MemoryError()
 *             info.shape[0] = item_count      # constant regardless of resizing
 */
  __pyx_t_6 = ((!(__pyx_v_info->shape != 0)) != 0);
  if (unlikely(__pyx_t_6)) {

    /* "array.pxd":109
 *             info.shape = <Py_ssize_t*> PyObject_Malloc(sizeof(Py_ssize_t) + 2)
 *             if not info.shape:
 *                 raise MemoryError()             # <<<<<<<<<<<<<<
 *             info.shape[0] = item_count      # constant regardless of resizing
 *             info.strides = &info.itemsize
 */
    PyErr_NoMemory(); __PYX_ERR(3, 109, __pyx_L1_error)

    /* "array.pxd":108
 * 
 *             info.shape = <Py_ssize_t*> PyObject_Malloc(sizeof(Py_ssize_t) + 2)
 *             if not info.shape:             # <<<<<<<<<<<<<<
 *                 raise MemoryError()
 *             info.shape[0] = item_count      # constant regardless of resizing
 */
  }

  /* "array.pxd":110
 *             if not info.shape:
 *                 raise MemoryError()
 *             info.shape[0] = item_count      # constant regardless of resizing             # <<<<<<<<<<<<<<
 *             info.strides = &info.itemsize
 * 
 */
  __pyx_t_5 = __Pyx_PyIndex_AsSsize_t(__pyx_v_item_count); if (unlikely((__pyx_t_5 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(3, 110, __pyx_L1_error)
  (__pyx_v_info->shape[0]) = __pyx_t_5;

  /* "array.pxd":111
 *                 raise MemoryError()
 *             info.shape[0] = item_count      # constant regardless of resizing
 *             info.strides = &info.itemsize             # <<<<<<<<<<<<<<
 * 
 *             info.format = <char*> (info.shape + 1)
 */
  __pyx_v_info->strides = (&__pyx_v_info->itemsize);

  /* "array.pxd":113
 *             info.strides = &info.itemsize
 * 
 *             info.format = <char*> (info.shape + 1)             # <<<<<<<<<<<<<<
 *             info.format[0] = self.ob_descr.typecode
 *             info.format[1] = 0
 */
  __pyx_v_info->format = ((char *)(__pyx_v_info->shape + 1));

  /* "array.pxd":114
 * 
 *             info.format = <char*> (info.shape + 1)
 *             info.format[0] = self.ob_descr.typecode             # <<<<<<<<<<<<<<
 *             info.format[1] = 0
 *             info.obj = self
 */
  __pyx_t_7 = __pyx_v_self->ob_descr->typecode;
  (__pyx_v_info->format[0]) = __pyx_t_7;

  /* "array.pxd":115
 *             info.format = <char*> (info.shape + 1)
 *             info.format[0] = self.ob_descr.typecode
 *             info.format[1] = 0             # <<<<<<<<<<<<<<
 *             info.obj = self
 * 
 */
  (__pyx_v_info->format[1]) = 0;

  /* "array.pxd":116
 *             info.format[0] = self.ob_descr.typecode
 *             info.format[1] = 0
 *             info.obj = self             # <<<<<<<<<<<<<<
 * 
 *         def __releasebuffer__(self, Py_buffer* info):
 */
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  __Pyx_GOTREF(__pyx_v_info->obj);
  __Pyx_DECREF(__pyx_v_info->obj);
  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);

  /* "array.pxd":93
 *             __data_union data
 * 
 *         def __getbuffer__(self, Py_buffer* info, int flags):             # <<<<<<<<<<<<<<
 *             # This implementation of getbuffer is geared towards Cython
 *             # requirements, and does not yet fulfill the PEP.
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("cpython.array.array.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  if (__pyx_v_info->obj != NULL) {
    __Pyx_GOTREF(__pyx_v_info->obj);
    __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0;
  }
  goto __pyx_L2;
  __pyx_L0:;
  if (__pyx_v_info->obj == Py_None) {
    __Pyx_GOTREF(__pyx_v_info->obj);
    __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0;
  }
  __pyx_L2:;
  __Pyx_XDECREF(__pyx_v_item_count);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "array.pxd":118
 *             info.obj = self
 * 
 *         def __releasebuffer__(self, Py_buffer* info):             # <<<<<<<<<<<<<<
 *             PyObject_Free(info.shape)
 * 
 */

/* Python wrapper */
static CYTHON_UNUSED void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info); /*proto*/
static CYTHON_UNUSED void __pyx_pw_7cpython_5array_5array_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__releasebuffer__ (wrapper)", 0);
  __pyx_pf_7cpython_5array_5array_2__releasebuffer__(((arrayobject *)__pyx_v_self), ((Py_buffer *)__pyx_v_info));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__releasebuffer__", 0);

  /* "array.pxd":119
 * 
 *         def __releasebuffer__(self, Py_buffer* info):
 *             PyObject_Free(info.shape)             # <<<<<<<<<<<<<<
 * 
 *     array newarrayobject(PyTypeObject* type, Py_ssize_t size, arraydescr *descr)
 */
  PyObject_Free(__pyx_v_info->shape);

  /* "array.pxd":118
 *             info.obj = self
 * 
 *         def __releasebuffer__(self, Py_buffer* info):             # <<<<<<<<<<<<<<
 *             PyObject_Free(info.shape)
 * 
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "array.pxd":130
 * 
 * 
 * cdef inline array clone(array template, Py_ssize_t length, bint zero):             # <<<<<<<<<<<<<<
 *     """ fast creation of a new array, given a template array.
 *     type will be same as template.
 */

static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_clone(arrayobject *__pyx_v_template, Py_ssize_t __pyx_v_length, int __pyx_v_zero) {
  arrayobject *__pyx_v_op = 0;
  arrayobject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("clone", 0);

  /* "array.pxd":134
 *     type will be same as template.
 *     if zero is true, new array will be initialized with zeroes."""
 *     cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr)             # <<<<<<<<<<<<<<
 *     if zero and op is not None:
 *         memset(op.data.as_chars, 0, length * op.ob_descr.itemsize)
 */
  __pyx_t_1 = ((PyObject *)newarrayobject(Py_TYPE(((PyObject *)__pyx_v_template)), __pyx_v_length, __pyx_v_template->ob_descr)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 134, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_op = ((arrayobject *)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "array.pxd":135
 *     if zero is true, new array will be initialized with zeroes."""
 *     cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr)
 *     if zero and op is not None:             # <<<<<<<<<<<<<<
 *         memset(op.data.as_chars, 0, length * op.ob_descr.itemsize)
 *     return op
 */
  __pyx_t_3 = (__pyx_v_zero != 0);
  if (__pyx_t_3) {
  } else {
    __pyx_t_2 = __pyx_t_3;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_3 = (((PyObject *)__pyx_v_op) != Py_None);
  __pyx_t_4 = (__pyx_t_3 != 0);
  __pyx_t_2 = __pyx_t_4;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_2) {

    /* "array.pxd":136
 *     cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr)
 *     if zero and op is not None:
 *         memset(op.data.as_chars, 0, length * op.ob_descr.itemsize)             # <<<<<<<<<<<<<<
 *     return op
 * 
 */
    (void)(memset(__pyx_v_op->data.as_chars, 0, (__pyx_v_length * __pyx_v_op->ob_descr->itemsize)));

    /* "array.pxd":135
 *     if zero is true, new array will be initialized with zeroes."""
 *     cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr)
 *     if zero and op is not None:             # <<<<<<<<<<<<<<
 *         memset(op.data.as_chars, 0, length * op.ob_descr.itemsize)
 *     return op
 */
  }

  /* "array.pxd":137
 *     if zero and op is not None:
 *         memset(op.data.as_chars, 0, length * op.ob_descr.itemsize)
 *     return op             # <<<<<<<<<<<<<<
 * 
 * cdef inline array copy(array self):
 */
  __Pyx_XDECREF(((PyObject *)__pyx_r));
  __Pyx_INCREF(((PyObject *)__pyx_v_op));
  __pyx_r = __pyx_v_op;
  goto __pyx_L0;

  /* "array.pxd":130
 * 
 * 
 * cdef inline array clone(array template, Py_ssize_t length, bint zero):             # <<<<<<<<<<<<<<
 *     """ fast creation of a new array, given a template array.
 *     type will be same as template.
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("cpython.array.clone", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_op);
  __Pyx_XGIVEREF((PyObject *)__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "array.pxd":139
 *     return op
 * 
 * cdef inline array copy(array self):             # <<<<<<<<<<<<<<
 *     """ make a copy of an array. """
 *     cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr)
 */

static CYTHON_INLINE arrayobject *__pyx_f_7cpython_5array_copy(arrayobject *__pyx_v_self) {
  arrayobject *__pyx_v_op = 0;
  arrayobject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("copy", 0);

  /* "array.pxd":141
 * cdef inline array copy(array self):
 *     """ make a copy of an array. """
 *     cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr)             # <<<<<<<<<<<<<<
 *     memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize)
 *     return op
 */
  __pyx_t_1 = ((PyObject *)newarrayobject(Py_TYPE(((PyObject *)__pyx_v_self)), Py_SIZE(((PyObject *)__pyx_v_self)), __pyx_v_self->ob_descr)); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 141, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_op = ((arrayobject *)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "array.pxd":142
 *     """ make a copy of an array. """
 *     cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr)
 *     memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize)             # <<<<<<<<<<<<<<
 *     return op
 * 
 */
  (void)(memcpy(__pyx_v_op->data.as_chars, __pyx_v_self->data.as_chars, (Py_SIZE(((PyObject *)__pyx_v_op)) * __pyx_v_op->ob_descr->itemsize)));

  /* "array.pxd":143
 *     cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr)
 *     memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize)
 *     return op             # <<<<<<<<<<<<<<
 * 
 * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1:
 */
  __Pyx_XDECREF(((PyObject *)__pyx_r));
  __Pyx_INCREF(((PyObject *)__pyx_v_op));
  __pyx_r = __pyx_v_op;
  goto __pyx_L0;

  /* "array.pxd":139
 *     return op
 * 
 * cdef inline array copy(array self):             # <<<<<<<<<<<<<<
 *     """ make a copy of an array. """
 *     cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("cpython.array.copy", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_op);
  __Pyx_XGIVEREF((PyObject *)__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "array.pxd":145
 *     return op
 * 
 * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1:             # <<<<<<<<<<<<<<
 *     """ efficient appending of new stuff of same type
 *     (e.g. of same array type)
 */

static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *__pyx_v_self, char *__pyx_v_stuff, Py_ssize_t __pyx_v_n) {
  Py_ssize_t __pyx_v_itemsize;
  Py_ssize_t __pyx_v_origsize;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("extend_buffer", 0);

  /* "array.pxd":149
 *     (e.g. of same array type)
 *     n: number of elements (not number of bytes!) """
 *     cdef Py_ssize_t itemsize = self.ob_descr.itemsize             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t origsize = Py_SIZE(self)
 *     resize_smart(self, origsize + n)
 */
  __pyx_t_1 = __pyx_v_self->ob_descr->itemsize;
  __pyx_v_itemsize = __pyx_t_1;

  /* "array.pxd":150
 *     n: number of elements (not number of bytes!) """
 *     cdef Py_ssize_t itemsize = self.ob_descr.itemsize
 *     cdef Py_ssize_t origsize = Py_SIZE(self)             # <<<<<<<<<<<<<<
 *     resize_smart(self, origsize + n)
 *     memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize)
 */
  __pyx_v_origsize = Py_SIZE(((PyObject *)__pyx_v_self));

  /* "array.pxd":151
 *     cdef Py_ssize_t itemsize = self.ob_descr.itemsize
 *     cdef Py_ssize_t origsize = Py_SIZE(self)
 *     resize_smart(self, origsize + n)             # <<<<<<<<<<<<<<
 *     memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize)
 *     return 0
 */
  __pyx_t_1 = resize_smart(__pyx_v_self, (__pyx_v_origsize + __pyx_v_n)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(3, 151, __pyx_L1_error)

  /* "array.pxd":152
 *     cdef Py_ssize_t origsize = Py_SIZE(self)
 *     resize_smart(self, origsize + n)
 *     memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize)             # <<<<<<<<<<<<<<
 *     return 0
 * 
 */
  (void)(memcpy((__pyx_v_self->data.as_chars + (__pyx_v_origsize * __pyx_v_itemsize)), __pyx_v_stuff, (__pyx_v_n * __pyx_v_itemsize)));

  /* "array.pxd":153
 *     resize_smart(self, origsize + n)
 *     memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize)
 *     return 0             # <<<<<<<<<<<<<<
 * 
 * cdef inline int extend(array self, array other) except -1:
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "array.pxd":145
 *     return op
 * 
 * cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1:             # <<<<<<<<<<<<<<
 *     """ efficient appending of new stuff of same type
 *     (e.g. of same array type)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_AddTraceback("cpython.array.extend_buffer", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "array.pxd":155
 *     return 0
 * 
 * cdef inline int extend(array self, array other) except -1:             # <<<<<<<<<<<<<<
 *     """ extend array with data from another array; types must match. """
 *     if self.ob_descr.typecode != other.ob_descr.typecode:
 */

static CYTHON_INLINE int __pyx_f_7cpython_5array_extend(arrayobject *__pyx_v_self, arrayobject *__pyx_v_other) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("extend", 0);

  /* "array.pxd":157
 * cdef inline int extend(array self, array other) except -1:
 *     """ extend array with data from another array; types must match. """
 *     if self.ob_descr.typecode != other.ob_descr.typecode:             # <<<<<<<<<<<<<<
 *         PyErr_BadArgument()
 *     return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
 */
  __pyx_t_1 = ((__pyx_v_self->ob_descr->typecode != __pyx_v_other->ob_descr->typecode) != 0);
  if (__pyx_t_1) {

    /* "array.pxd":158
 *     """ extend array with data from another array; types must match. """
 *     if self.ob_descr.typecode != other.ob_descr.typecode:
 *         PyErr_BadArgument()             # <<<<<<<<<<<<<<
 *     return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
 * 
 */
    __pyx_t_2 = PyErr_BadArgument(); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(3, 158, __pyx_L1_error)

    /* "array.pxd":157
 * cdef inline int extend(array self, array other) except -1:
 *     """ extend array with data from another array; types must match. """
 *     if self.ob_descr.typecode != other.ob_descr.typecode:             # <<<<<<<<<<<<<<
 *         PyErr_BadArgument()
 *     return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
 */
  }

  /* "array.pxd":159
 *     if self.ob_descr.typecode != other.ob_descr.typecode:
 *         PyErr_BadArgument()
 *     return extend_buffer(self, other.data.as_chars, Py_SIZE(other))             # <<<<<<<<<<<<<<
 * 
 * cdef inline void zero(array self):
 */
  __pyx_t_2 = __pyx_f_7cpython_5array_extend_buffer(__pyx_v_self, __pyx_v_other->data.as_chars, Py_SIZE(((PyObject *)__pyx_v_other))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(3, 159, __pyx_L1_error)
  __pyx_r = __pyx_t_2;
  goto __pyx_L0;

  /* "array.pxd":155
 *     return 0
 * 
 * cdef inline int extend(array self, array other) except -1:             # <<<<<<<<<<<<<<
 *     """ extend array with data from another array; types must match. """
 *     if self.ob_descr.typecode != other.ob_descr.typecode:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_AddTraceback("cpython.array.extend", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "array.pxd":161
 *     return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
 * 
 * cdef inline void zero(array self):             # <<<<<<<<<<<<<<
 *     """ set all elements of array to zero. """
 *     memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize)
 */

static CYTHON_INLINE void __pyx_f_7cpython_5array_zero(arrayobject *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("zero", 0);

  /* "array.pxd":163
 * cdef inline void zero(array self):
 *     """ set all elements of array to zero. """
 *     memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize)             # <<<<<<<<<<<<<<
 */
  (void)(memset(__pyx_v_self->data.as_chars, 0, (Py_SIZE(((PyObject *)__pyx_v_self)) * __pyx_v_self->ob_descr->itemsize)));

  /* "array.pxd":161
 *     return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
 * 
 * cdef inline void zero(array self):             # <<<<<<<<<<<<<<
 *     """ set all elements of array to zero. """
 *     memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize)
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "string.to_py":31
 * 
 * @cname("__pyx_convert_PyObject_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyObject_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyObject_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

static CYTHON_INLINE PyObject *__pyx_convert_PyObject_string_to_py_std__in_string(std::string const &__pyx_v_s) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_PyObject_string_to_py_std__in_string", 0);

  /* "string.to_py":32
 * @cname("__pyx_convert_PyObject_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyObject_string_to_py_std__in_string(const string& s):
 *     return __Pyx_PyObject_FromStringAndSize(s.data(), s.size())             # <<<<<<<<<<<<<<
 * cdef extern from *:
 *     cdef object __Pyx_PyUnicode_FromStringAndSize(const char*, size_t)
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_FromStringAndSize(__pyx_v_s.data(), __pyx_v_s.size()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 32, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "string.to_py":31
 * 
 * @cname("__pyx_convert_PyObject_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyObject_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyObject_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("string.to_py.__pyx_convert_PyObject_string_to_py_std__in_string", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "string.to_py":37
 * 
 * @cname("__pyx_convert_PyUnicode_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyUnicode_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyUnicode_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

static CYTHON_INLINE PyObject *__pyx_convert_PyUnicode_string_to_py_std__in_string(std::string const &__pyx_v_s) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_PyUnicode_string_to_py_std__in_string", 0);

  /* "string.to_py":38
 * @cname("__pyx_convert_PyUnicode_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyUnicode_string_to_py_std__in_string(const string& s):
 *     return __Pyx_PyUnicode_FromStringAndSize(s.data(), s.size())             # <<<<<<<<<<<<<<
 * cdef extern from *:
 *     cdef object __Pyx_PyStr_FromStringAndSize(const char*, size_t)
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyUnicode_FromStringAndSize(__pyx_v_s.data(), __pyx_v_s.size()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 38, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "string.to_py":37
 * 
 * @cname("__pyx_convert_PyUnicode_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyUnicode_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyUnicode_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("string.to_py.__pyx_convert_PyUnicode_string_to_py_std__in_string", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "string.to_py":43
 * 
 * @cname("__pyx_convert_PyStr_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyStr_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyStr_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

static CYTHON_INLINE PyObject *__pyx_convert_PyStr_string_to_py_std__in_string(std::string const &__pyx_v_s) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_PyStr_string_to_py_std__in_string", 0);

  /* "string.to_py":44
 * @cname("__pyx_convert_PyStr_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyStr_string_to_py_std__in_string(const string& s):
 *     return __Pyx_PyStr_FromStringAndSize(s.data(), s.size())             # <<<<<<<<<<<<<<
 * cdef extern from *:
 *     cdef object __Pyx_PyBytes_FromStringAndSize(const char*, size_t)
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyStr_FromStringAndSize(__pyx_v_s.data(), __pyx_v_s.size()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 44, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "string.to_py":43
 * 
 * @cname("__pyx_convert_PyStr_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyStr_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyStr_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("string.to_py.__pyx_convert_PyStr_string_to_py_std__in_string", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "string.to_py":49
 * 
 * @cname("__pyx_convert_PyBytes_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyBytes_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyBytes_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

static CYTHON_INLINE PyObject *__pyx_convert_PyBytes_string_to_py_std__in_string(std::string const &__pyx_v_s) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_PyBytes_string_to_py_std__in_string", 0);

  /* "string.to_py":50
 * @cname("__pyx_convert_PyBytes_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyBytes_string_to_py_std__in_string(const string& s):
 *     return __Pyx_PyBytes_FromStringAndSize(s.data(), s.size())             # <<<<<<<<<<<<<<
 * cdef extern from *:
 *     cdef object __Pyx_PyByteArray_FromStringAndSize(const char*, size_t)
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyBytes_FromStringAndSize(__pyx_v_s.data(), __pyx_v_s.size()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 50, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "string.to_py":49
 * 
 * @cname("__pyx_convert_PyBytes_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyBytes_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyBytes_FromStringAndSize(s.data(), s.size())
 * cdef extern from *:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("string.to_py.__pyx_convert_PyBytes_string_to_py_std__in_string", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "string.to_py":55
 * 
 * @cname("__pyx_convert_PyByteArray_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyByteArray_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyByteArray_FromStringAndSize(s.data(), s.size())
 * 
 */

static CYTHON_INLINE PyObject *__pyx_convert_PyByteArray_string_to_py_std__in_string(std::string const &__pyx_v_s) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_PyByteArray_string_to_py_std__in_string", 0);

  /* "string.to_py":56
 * @cname("__pyx_convert_PyByteArray_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyByteArray_string_to_py_std__in_string(const string& s):
 *     return __Pyx_PyByteArray_FromStringAndSize(s.data(), s.size())             # <<<<<<<<<<<<<<
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyByteArray_FromStringAndSize(__pyx_v_s.data(), __pyx_v_s.size()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 56, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "string.to_py":55
 * 
 * @cname("__pyx_convert_PyByteArray_string_to_py_std__in_string")
 * cdef inline object __pyx_convert_PyByteArray_string_to_py_std__in_string(const string& s):             # <<<<<<<<<<<<<<
 *     return __Pyx_PyByteArray_FromStringAndSize(s.data(), s.size())
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("string.to_py.__pyx_convert_PyByteArray_string_to_py_std__in_string", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "vector.to_py":60
 * 
 * @cname("__pyx_convert_vector_to_py_int")
 * cdef object __pyx_convert_vector_to_py_int(vector[X]& v):             # <<<<<<<<<<<<<<
 *     return [v[i] for i in range(v.size())]
 * 
 */

static PyObject *__pyx_convert_vector_to_py_int(const std::vector<int>  &__pyx_v_v) {
  size_t __pyx_v_i;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  size_t __pyx_t_2;
  size_t __pyx_t_3;
  size_t __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_vector_to_py_int", 0);

  /* "vector.to_py":61
 * @cname("__pyx_convert_vector_to_py_int")
 * cdef object __pyx_convert_vector_to_py_int(vector[X]& v):
 *     return [v[i] for i in range(v.size())]             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 61, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __pyx_v_v.size();
  __pyx_t_3 = __pyx_t_2;
  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
    __pyx_v_i = __pyx_t_4;
    __pyx_t_5 = __Pyx_PyInt_From_int((__pyx_v_v[__pyx_v_i])); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 61, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    if (unlikely(__Pyx_ListComp_Append(__pyx_t_1, (PyObject*)__pyx_t_5))) __PYX_ERR(0, 61, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  }
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "vector.to_py":60
 * 
 * @cname("__pyx_convert_vector_to_py_int")
 * cdef object __pyx_convert_vector_to_py_int(vector[X]& v):             # <<<<<<<<<<<<<<
 *     return [v[i] for i in range(v.size())]
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("vector.to_py.__pyx_convert_vector_to_py_int", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "map.to_py":201
 * 
 * @cname("__pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___")
 * cdef object __pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___(const map[X,Y]& s):             # <<<<<<<<<<<<<<
 *     o = {}
 *     cdef const map[X,Y].value_type *key_value
 */

static PyObject *__pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___(std::unordered_map<std::string,std::vector<int> >  const &__pyx_v_s) {
  PyObject *__pyx_v_o = NULL;
  std::unordered_map<std::string,std::vector<int> > ::value_type const *__pyx_v_key_value;
  std::unordered_map<std::string,std::vector<int> > ::const_iterator __pyx_v_iter;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___", 0);

  /* "map.to_py":202
 * @cname("__pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___")
 * cdef object __pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___(const map[X,Y]& s):
 *     o = {}             # <<<<<<<<<<<<<<
 *     cdef const map[X,Y].value_type *key_value
 *     cdef map[X,Y].const_iterator iter = s.begin()
 */
  __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 202, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_o = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "map.to_py":204
 *     o = {}
 *     cdef const map[X,Y].value_type *key_value
 *     cdef map[X,Y].const_iterator iter = s.begin()             # <<<<<<<<<<<<<<
 *     while iter != s.end():
 *         key_value = &cython.operator.dereference(iter)
 */
  __pyx_v_iter = __pyx_v_s.begin();

  /* "map.to_py":205
 *     cdef const map[X,Y].value_type *key_value
 *     cdef map[X,Y].const_iterator iter = s.begin()
 *     while iter != s.end():             # <<<<<<<<<<<<<<
 *         key_value = &cython.operator.dereference(iter)
 *         o[key_value.first] = key_value.second
 */
  while (1) {
    __pyx_t_2 = ((__pyx_v_iter != __pyx_v_s.end()) != 0);
    if (!__pyx_t_2) break;

    /* "map.to_py":206
 *     cdef map[X,Y].const_iterator iter = s.begin()
 *     while iter != s.end():
 *         key_value = &cython.operator.dereference(iter)             # <<<<<<<<<<<<<<
 *         o[key_value.first] = key_value.second
 *         cython.operator.preincrement(iter)
 */
    __pyx_v_key_value = (&(*__pyx_v_iter));

    /* "map.to_py":207
 *     while iter != s.end():
 *         key_value = &cython.operator.dereference(iter)
 *         o[key_value.first] = key_value.second             # <<<<<<<<<<<<<<
 *         cython.operator.preincrement(iter)
 *     return o
 */
    __pyx_t_1 = __pyx_convert_vector_to_py_int(__pyx_v_key_value->second); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 207, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = __pyx_convert_PyUnicode_string_to_py_std__in_string(__pyx_v_key_value->first); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 207, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    if (unlikely(PyDict_SetItem(__pyx_v_o, __pyx_t_3, __pyx_t_1) < 0)) __PYX_ERR(0, 207, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

    /* "map.to_py":208
 *         key_value = &cython.operator.dereference(iter)
 *         o[key_value.first] = key_value.second
 *         cython.operator.preincrement(iter)             # <<<<<<<<<<<<<<
 *     return o
 * 
 */
    (void)((++__pyx_v_iter));
  }

  /* "map.to_py":209
 *         o[key_value.first] = key_value.second
 *         cython.operator.preincrement(iter)
 *     return o             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_o);
  __pyx_r = __pyx_v_o;
  goto __pyx_L0;

  /* "map.to_py":201
 * 
 * @cname("__pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___")
 * cdef object __pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___(const map[X,Y]& s):             # <<<<<<<<<<<<<<
 *     o = {}
 *     cdef const map[X,Y].value_type *key_value
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("map.to_py.__pyx_convert_unordered_map_to_py_std_3a__3a_string____std_3a__3a_vector_3c_int_3e___", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_o);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "string.from_py":13
 * 
 * @cname("__pyx_convert_string_from_py_std__in_string")
 * cdef string __pyx_convert_string_from_py_std__in_string(object o) except *:             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t length = 0
 *     cdef const char* data = __Pyx_PyObject_AsStringAndSize(o, &length)
 */

static std::string __pyx_convert_string_from_py_std__in_string(PyObject *__pyx_v_o) {
  Py_ssize_t __pyx_v_length;
  char const *__pyx_v_data;
  std::string __pyx_r;
  __Pyx_RefNannyDeclarations
  char const *__pyx_t_1;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_string_from_py_std__in_string", 0);

  /* "string.from_py":14
 * @cname("__pyx_convert_string_from_py_std__in_string")
 * cdef string __pyx_convert_string_from_py_std__in_string(object o) except *:
 *     cdef Py_ssize_t length = 0             # <<<<<<<<<<<<<<
 *     cdef const char* data = __Pyx_PyObject_AsStringAndSize(o, &length)
 *     return string(data, length)
 */
  __pyx_v_length = 0;

  /* "string.from_py":15
 * cdef string __pyx_convert_string_from_py_std__in_string(object o) except *:
 *     cdef Py_ssize_t length = 0
 *     cdef const char* data = __Pyx_PyObject_AsStringAndSize(o, &length)             # <<<<<<<<<<<<<<
 *     return string(data, length)
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_AsStringAndSize(__pyx_v_o, (&__pyx_v_length)); if (unlikely(__pyx_t_1 == ((char const *)NULL))) __PYX_ERR(0, 15, __pyx_L1_error)
  __pyx_v_data = __pyx_t_1;

  /* "string.from_py":16
 *     cdef Py_ssize_t length = 0
 *     cdef const char* data = __Pyx_PyObject_AsStringAndSize(o, &length)
 *     return string(data, length)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = std::string(__pyx_v_data, __pyx_v_length);
  goto __pyx_L0;

  /* "string.from_py":13
 * 
 * @cname("__pyx_convert_string_from_py_std__in_string")
 * cdef string __pyx_convert_string_from_py_std__in_string(object o) except *:             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t length = 0
 *     cdef const char* data = __Pyx_PyObject_AsStringAndSize(o, &length)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_AddTraceback("string.from_py.__pyx_convert_string_from_py_std__in_string", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_pretend_to_initialize(&__pyx_r);
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "vector.from_py":45
 * 
 * @cname("__pyx_convert_vector_from_py_int")
 * cdef vector[X] __pyx_convert_vector_from_py_int(object o) except *:             # <<<<<<<<<<<<<<
 *     cdef vector[X] v
 *     for item in o:
 */

static std::vector<int>  __pyx_convert_vector_from_py_int(PyObject *__pyx_v_o) {
  std::vector<int>  __pyx_v_v;
  PyObject *__pyx_v_item = NULL;
  std::vector<int>  __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  Py_ssize_t __pyx_t_2;
  PyObject *(*__pyx_t_3)(PyObject *);
  PyObject *__pyx_t_4 = NULL;
  int __pyx_t_5;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_vector_from_py_int", 0);

  /* "vector.from_py":47
 * cdef vector[X] __pyx_convert_vector_from_py_int(object o) except *:
 *     cdef vector[X] v
 *     for item in o:             # <<<<<<<<<<<<<<
 *         v.push_back(<X>item)
 *     return v
 */
  if (likely(PyList_CheckExact(__pyx_v_o)) || PyTuple_CheckExact(__pyx_v_o)) {
    __pyx_t_1 = __pyx_v_o; __Pyx_INCREF(__pyx_t_1); __pyx_t_2 = 0;
    __pyx_t_3 = NULL;
  } else {
    __pyx_t_2 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_o); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 47, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_3 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 47, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_3)) {
      if (likely(PyList_CheckExact(__pyx_t_1))) {
        if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(0, 47, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 47, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      } else {
        if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) __PYX_ERR(0, 47, __pyx_L1_error)
        #else
        __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 47, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_4);
        #endif
      }
    } else {
      __pyx_t_4 = __pyx_t_3(__pyx_t_1);
      if (unlikely(!__pyx_t_4)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(0, 47, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_4);
    }
    __Pyx_XDECREF_SET(__pyx_v_item, __pyx_t_4);
    __pyx_t_4 = 0;

    /* "vector.from_py":48
 *     cdef vector[X] v
 *     for item in o:
 *         v.push_back(<X>item)             # <<<<<<<<<<<<<<
 *     return v
 * 
 */
    __pyx_t_5 = __Pyx_PyInt_As_int(__pyx_v_item); if (unlikely((__pyx_t_5 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 48, __pyx_L1_error)
    __pyx_v_v.push_back(((int)__pyx_t_5));

    /* "vector.from_py":47
 * cdef vector[X] __pyx_convert_vector_from_py_int(object o) except *:
 *     cdef vector[X] v
 *     for item in o:             # <<<<<<<<<<<<<<
 *         v.push_back(<X>item)
 *     return v
 */
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "vector.from_py":49
 *     for item in o:
 *         v.push_back(<X>item)
 *     return v             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_v;
  goto __pyx_L0;

  /* "vector.from_py":45
 * 
 * @cname("__pyx_convert_vector_from_py_int")
 * cdef vector[X] __pyx_convert_vector_from_py_int(object o) except *:             # <<<<<<<<<<<<<<
 *     cdef vector[X] v
 *     for item in o:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("vector.from_py.__pyx_convert_vector_from_py_int", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_pretend_to_initialize(&__pyx_r);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_item);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "map.from_py":174
 * 
 * @cname("__pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___")
 * cdef map[X,Y] __pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___(object o) except *:             # <<<<<<<<<<<<<<
 *     cdef dict d = o
 *     cdef map[X,Y] m
 */

static std::unordered_map<std::string,std::vector<int> >  __pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___(PyObject *__pyx_v_o) {
  PyObject *__pyx_v_d = 0;
  std::unordered_map<std::string,std::vector<int> >  __pyx_v_m;
  PyObject *__pyx_v_key = NULL;
  PyObject *__pyx_v_value = NULL;
  std::unordered_map<std::string,std::vector<int> >  __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  Py_ssize_t __pyx_t_2;
  Py_ssize_t __pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_t_7;
  std::string __pyx_t_8;
  std::vector<int>  __pyx_t_9;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___", 0);

  /* "map.from_py":175
 * @cname("__pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___")
 * cdef map[X,Y] __pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___(object o) except *:
 *     cdef dict d = o             # <<<<<<<<<<<<<<
 *     cdef map[X,Y] m
 *     for key, value in d.iteritems():
 */
  if (!(likely(PyDict_CheckExact(__pyx_v_o))||((__pyx_v_o) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "dict", Py_TYPE(__pyx_v_o)->tp_name), 0))) __PYX_ERR(0, 175, __pyx_L1_error)
  __pyx_t_1 = __pyx_v_o;
  __Pyx_INCREF(__pyx_t_1);
  __pyx_v_d = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "map.from_py":177
 *     cdef dict d = o
 *     cdef map[X,Y] m
 *     for key, value in d.iteritems():             # <<<<<<<<<<<<<<
 *         m.insert(pair[X,Y](<X>key, <Y>value))
 *     return m
 */
  __pyx_t_2 = 0;
  if (unlikely(__pyx_v_d == Py_None)) {
    PyErr_Format(PyExc_AttributeError, "'NoneType' object has no attribute '%.30s'", "iteritems");
    __PYX_ERR(0, 177, __pyx_L1_error)
  }
  __pyx_t_5 = __Pyx_dict_iterator(__pyx_v_d, 1, __pyx_n_s_iteritems, (&__pyx_t_3), (&__pyx_t_4)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 177, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_1);
  __pyx_t_1 = __pyx_t_5;
  __pyx_t_5 = 0;
  while (1) {
    __pyx_t_7 = __Pyx_dict_iter_next(__pyx_t_1, __pyx_t_3, &__pyx_t_2, &__pyx_t_5, &__pyx_t_6, NULL, __pyx_t_4);
    if (unlikely(__pyx_t_7 == 0)) break;
    if (unlikely(__pyx_t_7 == -1)) __PYX_ERR(0, 177, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_XDECREF_SET(__pyx_v_key, __pyx_t_5);
    __pyx_t_5 = 0;
    __Pyx_XDECREF_SET(__pyx_v_value, __pyx_t_6);
    __pyx_t_6 = 0;

    /* "map.from_py":178
 *     cdef map[X,Y] m
 *     for key, value in d.iteritems():
 *         m.insert(pair[X,Y](<X>key, <Y>value))             # <<<<<<<<<<<<<<
 *     return m
 * 
 */
    __pyx_t_8 = __pyx_convert_string_from_py_std__in_string(__pyx_v_key); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 178, __pyx_L1_error)
    __pyx_t_9 = __pyx_convert_vector_from_py_int(__pyx_v_value); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 178, __pyx_L1_error)
    __pyx_v_m.insert(std::pair<std::string,std::vector<int> > (((std::string)__pyx_t_8), ((std::vector<int> )__pyx_t_9)));
  }
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "map.from_py":179
 *     for key, value in d.iteritems():
 *         m.insert(pair[X,Y](<X>key, <Y>value))
 *     return m             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_m;
  goto __pyx_L0;

  /* "map.from_py":174
 * 
 * @cname("__pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___")
 * cdef map[X,Y] __pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___(object o) except *:             # <<<<<<<<<<<<<<
 *     cdef dict d = o
 *     cdef map[X,Y] m
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("map.from_py.__pyx_convert_unordered_map_from_py_std_3a__3a_string__and_std_3a__3a_vector_3c_int_3e___", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_pretend_to_initialize(&__pyx_r);
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_d);
  __Pyx_XDECREF(__pyx_v_key);
  __Pyx_XDECREF(__pyx_v_value);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":123
 *         cdef bint dtype_is_object
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,             # <<<<<<<<<<<<<<
 *                   mode="c", bint allocate_buffer=True):
 * 
 */

/* Python wrapper */
static int __pyx_array___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_array___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_shape = 0;
  Py_ssize_t __pyx_v_itemsize;
  PyObject *__pyx_v_format = 0;
  PyObject *__pyx_v_mode = 0;
  int __pyx_v_allocate_buffer;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_shape,&__pyx_n_s_itemsize,&__pyx_n_s_format,&__pyx_n_s_mode,&__pyx_n_s_allocate_buffer,0};
    PyObject* values[5] = {0,0,0,0,0};
    values[3] = ((PyObject *)__pyx_n_s_c);
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_shape)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_itemsize)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, 1); __PYX_ERR(0, 123, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_format)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, 2); __PYX_ERR(0, 123, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  3:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_mode);
          if (value) { values[3] = value; kw_args--; }
        }
        CYTHON_FALLTHROUGH;
        case  4:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_allocate_buffer);
          if (value) { values[4] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) __PYX_ERR(0, 123, __pyx_L3_error)
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
        CYTHON_FALLTHROUGH;
        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
        CYTHON_FALLTHROUGH;
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_shape = ((PyObject*)values[0]);
    __pyx_v_itemsize = __Pyx_PyIndex_AsSsize_t(values[1]); if (unlikely((__pyx_v_itemsize == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 123, __pyx_L3_error)
    __pyx_v_format = values[2];
    __pyx_v_mode = values[3];
    if (values[4]) {
      __pyx_v_allocate_buffer = __Pyx_PyObject_IsTrue(values[4]); if (unlikely((__pyx_v_allocate_buffer == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 124, __pyx_L3_error)
    } else {

      /* "View.MemoryView":124
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,
 *                   mode="c", bint allocate_buffer=True):             # <<<<<<<<<<<<<<
 * 
 *         cdef int idx
 */
      __pyx_v_allocate_buffer = ((int)1);
    }
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 123, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("View.MemoryView.array.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_shape), (&PyTuple_Type), 1, "shape", 1))) __PYX_ERR(0, 123, __pyx_L1_error)
  if (unlikely(((PyObject *)__pyx_v_format) == Py_None)) {
    PyErr_Format(PyExc_TypeError, "Argument '%.200s' must not be None", "format"); __PYX_ERR(0, 123, __pyx_L1_error)
  }
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(((struct __pyx_array_obj *)__pyx_v_self), __pyx_v_shape, __pyx_v_itemsize, __pyx_v_format, __pyx_v_mode, __pyx_v_allocate_buffer);

  /* "View.MemoryView":123
 *         cdef bint dtype_is_object
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,             # <<<<<<<<<<<<<<
 *                   mode="c", bint allocate_buffer=True):
 * 
 */

  /* function exit code */
  goto __pyx_L0;
  __pyx_L1_error:;
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer) {
  int __pyx_v_idx;
  Py_ssize_t __pyx_v_i;
  Py_ssize_t __pyx_v_dim;
  PyObject **__pyx_v_p;
  char __pyx_v_order;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  char *__pyx_t_7;
  int __pyx_t_8;
  Py_ssize_t __pyx_t_9;
  PyObject *__pyx_t_10 = NULL;
  Py_ssize_t __pyx_t_11;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__cinit__", 0);
  __Pyx_INCREF(__pyx_v_format);

  /* "View.MemoryView":130
 *         cdef PyObject **p
 * 
 *         self.ndim = <int> len(shape)             # <<<<<<<<<<<<<<
 *         self.itemsize = itemsize
 * 
 */
  if (unlikely(__pyx_v_shape == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
    __PYX_ERR(0, 130, __pyx_L1_error)
  }
  __pyx_t_1 = PyTuple_GET_SIZE(__pyx_v_shape); if (unlikely(__pyx_t_1 == ((Py_ssize_t)-1))) __PYX_ERR(0, 130, __pyx_L1_error)
  __pyx_v_self->ndim = ((int)__pyx_t_1);

  /* "View.MemoryView":131
 * 
 *         self.ndim = <int> len(shape)
 *         self.itemsize = itemsize             # <<<<<<<<<<<<<<
 * 
 *         if not self.ndim:
 */
  __pyx_v_self->itemsize = __pyx_v_itemsize;

  /* "View.MemoryView":133
 *         self.itemsize = itemsize
 * 
 *         if not self.ndim:             # <<<<<<<<<<<<<<
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 */
  __pyx_t_2 = ((!(__pyx_v_self->ndim != 0)) != 0);
  if (unlikely(__pyx_t_2)) {

    /* "View.MemoryView":134
 * 
 *         if not self.ndim:
 *             raise ValueError("Empty shape tuple for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if itemsize <= 0:
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__18, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 134, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __PYX_ERR(0, 134, __pyx_L1_error)

    /* "View.MemoryView":133
 *         self.itemsize = itemsize
 * 
 *         if not self.ndim:             # <<<<<<<<<<<<<<
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 */
  }

  /* "View.MemoryView":136
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 *         if itemsize <= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 */
  __pyx_t_2 = ((__pyx_v_itemsize <= 0) != 0);
  if (unlikely(__pyx_t_2)) {

    /* "View.MemoryView":137
 * 
 *         if itemsize <= 0:
 *             raise ValueError("itemsize <= 0 for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if not isinstance(format, bytes):
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__19, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 137, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __PYX_ERR(0, 137, __pyx_L1_error)

    /* "View.MemoryView":136
 *             raise ValueError("Empty shape tuple for cython.array")
 * 
 *         if itemsize <= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 */
  }

  /* "View.MemoryView":139
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 *         if not isinstance(format, bytes):             # <<<<<<<<<<<<<<
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string
 */
  __pyx_t_2 = PyBytes_Check(__pyx_v_format); 
  __pyx_t_4 = ((!(__pyx_t_2 != 0)) != 0);
  if (__pyx_t_4) {

    /* "View.MemoryView":140
 * 
 *         if not isinstance(format, bytes):
 *             format = format.encode('ASCII')             # <<<<<<<<<<<<<<
 *         self._format = format  # keep a reference to the byte string
 *         self.format = self._format
 */
    __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_format, __pyx_n_s_encode); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 140, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_6 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_5);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_5, function);
      }
    }
    __pyx_t_3 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_5, __pyx_t_6, __pyx_n_s_ASCII) : __Pyx_PyObject_CallOneArg(__pyx_t_5, __pyx_n_s_ASCII);
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 140, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF_SET(__pyx_v_format, __pyx_t_3);
    __pyx_t_3 = 0;

    /* "View.MemoryView":139
 *             raise ValueError("itemsize <= 0 for cython.array")
 * 
 *         if not isinstance(format, bytes):             # <<<<<<<<<<<<<<
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string
 */
  }

  /* "View.MemoryView":141
 *         if not isinstance(format, bytes):
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string             # <<<<<<<<<<<<<<
 *         self.format = self._format
 * 
 */
  if (!(likely(PyBytes_CheckExact(__pyx_v_format))||((__pyx_v_format) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "bytes", Py_TYPE(__pyx_v_format)->tp_name), 0))) __PYX_ERR(0, 141, __pyx_L1_error)
  __pyx_t_3 = __pyx_v_format;
  __Pyx_INCREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_3);
  __Pyx_GOTREF(__pyx_v_self->_format);
  __Pyx_DECREF(__pyx_v_self->_format);
  __pyx_v_self->_format = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "View.MemoryView":142
 *             format = format.encode('ASCII')
 *         self._format = format  # keep a reference to the byte string
 *         self.format = self._format             # <<<<<<<<<<<<<<
 * 
 * 
 */
  if (unlikely(__pyx_v_self->_format == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "expected bytes, NoneType found");
    __PYX_ERR(0, 142, __pyx_L1_error)
  }
  __pyx_t_7 = __Pyx_PyBytes_AsWritableString(__pyx_v_self->_format); if (unlikely((!__pyx_t_7) && PyErr_Occurred())) __PYX_ERR(0, 142, __pyx_L1_error)
  __pyx_v_self->format = __pyx_t_7;

  /* "View.MemoryView":145
 * 
 * 
 *         self._shape = <Py_ssize_t *> PyObject_Malloc(sizeof(Py_ssize_t)*self.ndim*2)             # <<<<<<<<<<<<<<
 *         self._strides = self._shape + self.ndim
 * 
 */
  __pyx_v_self->_shape = ((Py_ssize_t *)PyObject_Malloc((((sizeof(Py_ssize_t)) * __pyx_v_self->ndim) * 2)));

  /* "View.MemoryView":146
 * 
 *         self._shape = <Py_ssize_t *> PyObject_Malloc(sizeof(Py_ssize_t)*self.ndim*2)
 *         self._strides = self._shape + self.ndim             # <<<<<<<<<<<<<<
 * 
 *         if not self._shape:
 */
  __pyx_v_self->_strides = (__pyx_v_self->_shape + __pyx_v_self->ndim);

  /* "View.MemoryView":148
 *         self._strides = self._shape + self.ndim
 * 
 *         if not self._shape:             # <<<<<<<<<<<<<<
 *             raise MemoryError("unable to allocate shape and strides.")
 * 
 */
  __pyx_t_4 = ((!(__pyx_v_self->_shape != 0)) != 0);
  if (unlikely(__pyx_t_4)) {

    /* "View.MemoryView":149
 * 
 *         if not self._shape:
 *             raise MemoryError("unable to allocate shape and strides.")             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_MemoryError, __pyx_tuple__20, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 149, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __PYX_ERR(0, 149, __pyx_L1_error)

    /* "View.MemoryView":148
 *         self._strides = self._shape + self.ndim
 * 
 *         if not self._shape:             # <<<<<<<<<<<<<<
 *             raise MemoryError("unable to allocate shape and strides.")
 * 
 */
  }

  /* "View.MemoryView":152
 * 
 * 
 *         for idx, dim in enumerate(shape):             # <<<<<<<<<<<<<<
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 */
  __pyx_t_8 = 0;
  __pyx_t_3 = __pyx_v_shape; __Pyx_INCREF(__pyx_t_3); __pyx_t_1 = 0;
  for (;;) {
    if (__pyx_t_1 >= PyTuple_GET_SIZE(__pyx_t_3)) break;
    #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_1); __Pyx_INCREF(__pyx_t_5); __pyx_t_1++; if (unlikely(0 < 0)) __PYX_ERR(0, 152, __pyx_L1_error)
    #else
    __pyx_t_5 = PySequence_ITEM(__pyx_t_3, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 152, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    #endif
    __pyx_t_9 = __Pyx_PyIndex_AsSsize_t(__pyx_t_5); if (unlikely((__pyx_t_9 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 152, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_v_dim = __pyx_t_9;
    __pyx_v_idx = __pyx_t_8;
    __pyx_t_8 = (__pyx_t_8 + 1);

    /* "View.MemoryView":153
 * 
 *         for idx, dim in enumerate(shape):
 *             if dim <= 0:             # <<<<<<<<<<<<<<
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 *             self._shape[idx] = dim
 */
    __pyx_t_4 = ((__pyx_v_dim <= 0) != 0);
    if (unlikely(__pyx_t_4)) {

      /* "View.MemoryView":154
 *         for idx, dim in enumerate(shape):
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))             # <<<<<<<<<<<<<<
 *             self._shape[idx] = dim
 * 
 */
      __pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_idx); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 154, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_6 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 154, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_10 = PyTuple_New(2); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 154, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_10);
      __Pyx_GIVEREF(__pyx_t_5);
      PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_5);
      __Pyx_GIVEREF(__pyx_t_6);
      PyTuple_SET_ITEM(__pyx_t_10, 1, __pyx_t_6);
      __pyx_t_5 = 0;
      __pyx_t_6 = 0;
      __pyx_t_6 = __Pyx_PyString_Format(__pyx_kp_s_Invalid_shape_in_axis_d_d, __pyx_t_10); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 154, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __pyx_t_10 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_6); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 154, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_10);
      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      __Pyx_Raise(__pyx_t_10, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __PYX_ERR(0, 154, __pyx_L1_error)

      /* "View.MemoryView":153
 * 
 *         for idx, dim in enumerate(shape):
 *             if dim <= 0:             # <<<<<<<<<<<<<<
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 *             self._shape[idx] = dim
 */
    }

    /* "View.MemoryView":155
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 *             self._shape[idx] = dim             # <<<<<<<<<<<<<<
 * 
 *         cdef char order
 */
    (__pyx_v_self->_shape[__pyx_v_idx]) = __pyx_v_dim;

    /* "View.MemoryView":152
 * 
 * 
 *         for idx, dim in enumerate(shape):             # <<<<<<<<<<<<<<
 *             if dim <= 0:
 *                 raise ValueError("Invalid shape in axis %d: %d." % (idx, dim))
 */
  }
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "View.MemoryView":158
 * 
 *         cdef char order
 *         if mode == 'fortran':             # <<<<<<<<<<<<<<
 *             order = b'F'
 *             self.mode = u'fortran'
 */
  __pyx_t_4 = (__Pyx_PyString_Equals(__pyx_v_mode, __pyx_n_s_fortran, Py_EQ)); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 158, __pyx_L1_error)
  if (__pyx_t_4) {

    /* "View.MemoryView":159
 *         cdef char order
 *         if mode == 'fortran':
 *             order = b'F'             # <<<<<<<<<<<<<<
 *             self.mode = u'fortran'
 *         elif mode == 'c':
 */
    __pyx_v_order = 'F';

    /* "View.MemoryView":160
 *         if mode == 'fortran':
 *             order = b'F'
 *             self.mode = u'fortran'             # <<<<<<<<<<<<<<
 *         elif mode == 'c':
 *             order = b'C'
 */
    __Pyx_INCREF(__pyx_n_u_fortran);
    __Pyx_GIVEREF(__pyx_n_u_fortran);
    __Pyx_GOTREF(__pyx_v_self->mode);
    __Pyx_DECREF(__pyx_v_self->mode);
    __pyx_v_self->mode = __pyx_n_u_fortran;

    /* "View.MemoryView":158
 * 
 *         cdef char order
 *         if mode == 'fortran':             # <<<<<<<<<<<<<<
 *             order = b'F'
 *             self.mode = u'fortran'
 */
    goto __pyx_L10;
  }

  /* "View.MemoryView":161
 *             order = b'F'
 *             self.mode = u'fortran'
 *         elif mode == 'c':             # <<<<<<<<<<<<<<
 *             order = b'C'
 *             self.mode = u'c'
 */
  __pyx_t_4 = (__Pyx_PyString_Equals(__pyx_v_mode, __pyx_n_s_c, Py_EQ)); if (unlikely(__pyx_t_4 < 0)) __PYX_ERR(0, 161, __pyx_L1_error)
  if (likely(__pyx_t_4)) {

    /* "View.MemoryView":162
 *             self.mode = u'fortran'
 *         elif mode == 'c':
 *             order = b'C'             # <<<<<<<<<<<<<<
 *             self.mode = u'c'
 *         else:
 */
    __pyx_v_order = 'C';

    /* "View.MemoryView":163
 *         elif mode == 'c':
 *             order = b'C'
 *             self.mode = u'c'             # <<<<<<<<<<<<<<
 *         else:
 *             raise ValueError("Invalid mode, expected 'c' or 'fortran', got %s" % mode)
 */
    __Pyx_INCREF(__pyx_n_u_c);
    __Pyx_GIVEREF(__pyx_n_u_c);
    __Pyx_GOTREF(__pyx_v_self->mode);
    __Pyx_DECREF(__pyx_v_self->mode);
    __pyx_v_self->mode = __pyx_n_u_c;

    /* "View.MemoryView":161
 *             order = b'F'
 *             self.mode = u'fortran'
 *         elif mode == 'c':             # <<<<<<<<<<<<<<
 *             order = b'C'
 *             self.mode = u'c'
 */
    goto __pyx_L10;
  }

  /* "View.MemoryView":165
 *             self.mode = u'c'
 *         else:
 *             raise ValueError("Invalid mode, expected 'c' or 'fortran', got %s" % mode)             # <<<<<<<<<<<<<<
 * 
 *         self.len = fill_contig_strides_array(self._shape, self._strides,
 */
  /*else*/ {
    __pyx_t_3 = __Pyx_PyString_FormatSafe(__pyx_kp_s_Invalid_mode_expected_c_or_fortr, __pyx_v_mode); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 165, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_10 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_3); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 165, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_10);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __Pyx_Raise(__pyx_t_10, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
    __PYX_ERR(0, 165, __pyx_L1_error)
  }
  __pyx_L10:;

  /* "View.MemoryView":167
 *             raise ValueError("Invalid mode, expected 'c' or 'fortran', got %s" % mode)
 * 
 *         self.len = fill_contig_strides_array(self._shape, self._strides,             # <<<<<<<<<<<<<<
 *                                              itemsize, self.ndim, order)
 * 
 */
  __pyx_v_self->len = __pyx_fill_contig_strides_array(__pyx_v_self->_shape, __pyx_v_self->_strides, __pyx_v_itemsize, __pyx_v_self->ndim, __pyx_v_order);

  /* "View.MemoryView":170
 *                                              itemsize, self.ndim, order)
 * 
 *         self.free_data = allocate_buffer             # <<<<<<<<<<<<<<
 *         self.dtype_is_object = format == b'O'
 *         if allocate_buffer:
 */
  __pyx_v_self->free_data = __pyx_v_allocate_buffer;

  /* "View.MemoryView":171
 * 
 *         self.free_data = allocate_buffer
 *         self.dtype_is_object = format == b'O'             # <<<<<<<<<<<<<<
 *         if allocate_buffer:
 * 
 */
  __pyx_t_10 = PyObject_RichCompare(__pyx_v_format, __pyx_n_b_O, Py_EQ); __Pyx_XGOTREF(__pyx_t_10); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 171, __pyx_L1_error)
  __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_10); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 171, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
  __pyx_v_self->dtype_is_object = __pyx_t_4;

  /* "View.MemoryView":172
 *         self.free_data = allocate_buffer
 *         self.dtype_is_object = format == b'O'
 *         if allocate_buffer:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_4 = (__pyx_v_allocate_buffer != 0);
  if (__pyx_t_4) {

    /* "View.MemoryView":175
 * 
 * 
 *             self.data = <char *>malloc(self.len)             # <<<<<<<<<<<<<<
 *             if not self.data:
 *                 raise MemoryError("unable to allocate array data.")
 */
    __pyx_v_self->data = ((char *)malloc(__pyx_v_self->len));

    /* "View.MemoryView":176
 * 
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:             # <<<<<<<<<<<<<<
 *                 raise MemoryError("unable to allocate array data.")
 * 
 */
    __pyx_t_4 = ((!(__pyx_v_self->data != 0)) != 0);
    if (unlikely(__pyx_t_4)) {

      /* "View.MemoryView":177
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:
 *                 raise MemoryError("unable to allocate array data.")             # <<<<<<<<<<<<<<
 * 
 *             if self.dtype_is_object:
 */
      __pyx_t_10 = __Pyx_PyObject_Call(__pyx_builtin_MemoryError, __pyx_tuple__21, NULL); if (unlikely(!__pyx_t_10)) __PYX_ERR(0, 177, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_10);
      __Pyx_Raise(__pyx_t_10, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
      __PYX_ERR(0, 177, __pyx_L1_error)

      /* "View.MemoryView":176
 * 
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:             # <<<<<<<<<<<<<<
 *                 raise MemoryError("unable to allocate array data.")
 * 
 */
    }

    /* "View.MemoryView":179
 *                 raise MemoryError("unable to allocate array data.")
 * 
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):
 */
    __pyx_t_4 = (__pyx_v_self->dtype_is_object != 0);
    if (__pyx_t_4) {

      /* "View.MemoryView":180
 * 
 *             if self.dtype_is_object:
 *                 p = <PyObject **> self.data             # <<<<<<<<<<<<<<
 *                 for i in range(self.len / itemsize):
 *                     p[i] = Py_None
 */
      __pyx_v_p = ((PyObject **)__pyx_v_self->data);

      /* "View.MemoryView":181
 *             if self.dtype_is_object:
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):             # <<<<<<<<<<<<<<
 *                     p[i] = Py_None
 *                     Py_INCREF(Py_None)
 */
      if (unlikely(__pyx_v_itemsize == 0)) {
        PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");
        __PYX_ERR(0, 181, __pyx_L1_error)
      }
      else if (sizeof(Py_ssize_t) == sizeof(long) && (!(((Py_ssize_t)-1) > 0)) && unlikely(__pyx_v_itemsize == (Py_ssize_t)-1)  && unlikely(UNARY_NEG_WOULD_OVERFLOW(__pyx_v_self->len))) {
        PyErr_SetString(PyExc_OverflowError, "value too large to perform division");
        __PYX_ERR(0, 181, __pyx_L1_error)
      }
      __pyx_t_1 = __Pyx_div_Py_ssize_t(__pyx_v_self->len, __pyx_v_itemsize);
      __pyx_t_9 = __pyx_t_1;
      for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_9; __pyx_t_11+=1) {
        __pyx_v_i = __pyx_t_11;

        /* "View.MemoryView":182
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):
 *                     p[i] = Py_None             # <<<<<<<<<<<<<<
 *                     Py_INCREF(Py_None)
 * 
 */
        (__pyx_v_p[__pyx_v_i]) = Py_None;

        /* "View.MemoryView":183
 *                 for i in range(self.len / itemsize):
 *                     p[i] = Py_None
 *                     Py_INCREF(Py_None)             # <<<<<<<<<<<<<<
 * 
 *     @cname('getbuffer')
 */
        Py_INCREF(Py_None);
      }

      /* "View.MemoryView":179
 *                 raise MemoryError("unable to allocate array data.")
 * 
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 p = <PyObject **> self.data
 *                 for i in range(self.len / itemsize):
 */
    }

    /* "View.MemoryView":172
 *         self.free_data = allocate_buffer
 *         self.dtype_is_object = format == b'O'
 *         if allocate_buffer:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  }

  /* "View.MemoryView":123
 *         cdef bint dtype_is_object
 * 
 *     def __cinit__(array self, tuple shape, Py_ssize_t itemsize, format not None,             # <<<<<<<<<<<<<<
 *                   mode="c", bint allocate_buffer=True):
 * 
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_AddTraceback("View.MemoryView.array.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_format);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":186
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         cdef int bufmode = -1
 *         if self.mode == u"c":
 */

/* Python wrapper */
static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(((struct __pyx_array_obj *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_v_bufmode;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  char *__pyx_t_4;
  Py_ssize_t __pyx_t_5;
  int __pyx_t_6;
  Py_ssize_t *__pyx_t_7;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  if (__pyx_v_info == NULL) {
    PyErr_SetString(PyExc_BufferError, "PyObject_GetBuffer: view==NULL argument is obsolete");
    return -1;
  }
  __Pyx_RefNannySetupContext("__getbuffer__", 0);
  __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None);
  __Pyx_GIVEREF(__pyx_v_info->obj);

  /* "View.MemoryView":187
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         cdef int bufmode = -1             # <<<<<<<<<<<<<<
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 */
  __pyx_v_bufmode = -1;

  /* "View.MemoryView":188
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         cdef int bufmode = -1
 *         if self.mode == u"c":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":
 */
  __pyx_t_1 = (__Pyx_PyUnicode_Equals(__pyx_v_self->mode, __pyx_n_u_c, Py_EQ)); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(0, 188, __pyx_L1_error)
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":189
 *         cdef int bufmode = -1
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS             # <<<<<<<<<<<<<<
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 */
    __pyx_v_bufmode = (PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS);

    /* "View.MemoryView":188
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         cdef int bufmode = -1
 *         if self.mode == u"c":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":190
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 */
  __pyx_t_2 = (__Pyx_PyUnicode_Equals(__pyx_v_self->mode, __pyx_n_u_fortran, Py_EQ)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(0, 190, __pyx_L1_error)
  __pyx_t_1 = (__pyx_t_2 != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":191
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS             # <<<<<<<<<<<<<<
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 */
    __pyx_v_bufmode = (PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS);

    /* "View.MemoryView":190
 *         if self.mode == u"c":
 *             bufmode = PyBUF_C_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         elif self.mode == u"fortran":             # <<<<<<<<<<<<<<
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 */
  }
  __pyx_L3:;

  /* "View.MemoryView":192
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):             # <<<<<<<<<<<<<<
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data
 */
  __pyx_t_1 = ((!((__pyx_v_flags & __pyx_v_bufmode) != 0)) != 0);
  if (unlikely(__pyx_t_1)) {

    /* "View.MemoryView":193
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")             # <<<<<<<<<<<<<<
 *         info.buf = self.data
 *         info.len = self.len
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__22, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 193, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __PYX_ERR(0, 193, __pyx_L1_error)

    /* "View.MemoryView":192
 *         elif self.mode == u"fortran":
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):             # <<<<<<<<<<<<<<
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data
 */
  }

  /* "View.MemoryView":194
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data             # <<<<<<<<<<<<<<
 *         info.len = self.len
 *         info.ndim = self.ndim
 */
  __pyx_t_4 = __pyx_v_self->data;
  __pyx_v_info->buf = __pyx_t_4;

  /* "View.MemoryView":195
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")
 *         info.buf = self.data
 *         info.len = self.len             # <<<<<<<<<<<<<<
 *         info.ndim = self.ndim
 *         info.shape = self._shape
 */
  __pyx_t_5 = __pyx_v_self->len;
  __pyx_v_info->len = __pyx_t_5;

  /* "View.MemoryView":196
 *         info.buf = self.data
 *         info.len = self.len
 *         info.ndim = self.ndim             # <<<<<<<<<<<<<<
 *         info.shape = self._shape
 *         info.strides = self._strides
 */
  __pyx_t_6 = __pyx_v_self->ndim;
  __pyx_v_info->ndim = __pyx_t_6;

  /* "View.MemoryView":197
 *         info.len = self.len
 *         info.ndim = self.ndim
 *         info.shape = self._shape             # <<<<<<<<<<<<<<
 *         info.strides = self._strides
 *         info.suboffsets = NULL
 */
  __pyx_t_7 = __pyx_v_self->_shape;
  __pyx_v_info->shape = __pyx_t_7;

  /* "View.MemoryView":198
 *         info.ndim = self.ndim
 *         info.shape = self._shape
 *         info.strides = self._strides             # <<<<<<<<<<<<<<
 *         info.suboffsets = NULL
 *         info.itemsize = self.itemsize
 */
  __pyx_t_7 = __pyx_v_self->_strides;
  __pyx_v_info->strides = __pyx_t_7;

  /* "View.MemoryView":199
 *         info.shape = self._shape
 *         info.strides = self._strides
 *         info.suboffsets = NULL             # <<<<<<<<<<<<<<
 *         info.itemsize = self.itemsize
 *         info.readonly = 0
 */
  __pyx_v_info->suboffsets = NULL;

  /* "View.MemoryView":200
 *         info.strides = self._strides
 *         info.suboffsets = NULL
 *         info.itemsize = self.itemsize             # <<<<<<<<<<<<<<
 *         info.readonly = 0
 * 
 */
  __pyx_t_5 = __pyx_v_self->itemsize;
  __pyx_v_info->itemsize = __pyx_t_5;

  /* "View.MemoryView":201
 *         info.suboffsets = NULL
 *         info.itemsize = self.itemsize
 *         info.readonly = 0             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_FORMAT:
 */
  __pyx_v_info->readonly = 0;

  /* "View.MemoryView":203
 *         info.readonly = 0
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.format
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_FORMAT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":204
 * 
 *         if flags & PyBUF_FORMAT:
 *             info.format = self.format             # <<<<<<<<<<<<<<
 *         else:
 *             info.format = NULL
 */
    __pyx_t_4 = __pyx_v_self->format;
    __pyx_v_info->format = __pyx_t_4;

    /* "View.MemoryView":203
 *         info.readonly = 0
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.format
 *         else:
 */
    goto __pyx_L5;
  }

  /* "View.MemoryView":206
 *             info.format = self.format
 *         else:
 *             info.format = NULL             # <<<<<<<<<<<<<<
 * 
 *         info.obj = self
 */
  /*else*/ {
    __pyx_v_info->format = NULL;
  }
  __pyx_L5:;

  /* "View.MemoryView":208
 *             info.format = NULL
 * 
 *         info.obj = self             # <<<<<<<<<<<<<<
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")
 */
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  __Pyx_GOTREF(__pyx_v_info->obj);
  __Pyx_DECREF(__pyx_v_info->obj);
  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);

  /* "View.MemoryView":186
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         cdef int bufmode = -1
 *         if self.mode == u"c":
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.array.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  if (__pyx_v_info->obj != NULL) {
    __Pyx_GOTREF(__pyx_v_info->obj);
    __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0;
  }
  goto __pyx_L2;
  __pyx_L0:;
  if (__pyx_v_info->obj == Py_None) {
    __Pyx_GOTREF(__pyx_v_info->obj);
    __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0;
  }
  __pyx_L2:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":212
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")
 * 
 *     def __dealloc__(array self):             # <<<<<<<<<<<<<<
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 */

/* Python wrapper */
static void __pyx_array___dealloc__(PyObject *__pyx_v_self); /*proto*/
static void __pyx_array___dealloc__(PyObject *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0);
  __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(((struct __pyx_array_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("__dealloc__", 0);

  /* "View.MemoryView":213
 * 
 *     def __dealloc__(array self):
 *         if self.callback_free_data != NULL:             # <<<<<<<<<<<<<<
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 */
  __pyx_t_1 = ((__pyx_v_self->callback_free_data != NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":214
 *     def __dealloc__(array self):
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)             # <<<<<<<<<<<<<<
 *         elif self.free_data:
 *             if self.dtype_is_object:
 */
    __pyx_v_self->callback_free_data(__pyx_v_self->data);

    /* "View.MemoryView":213
 * 
 *     def __dealloc__(array self):
 *         if self.callback_free_data != NULL:             # <<<<<<<<<<<<<<
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":215
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 *         elif self.free_data:             # <<<<<<<<<<<<<<
 *             if self.dtype_is_object:
 *                 refcount_objects_in_slice(self.data, self._shape,
 */
  __pyx_t_1 = (__pyx_v_self->free_data != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":216
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 refcount_objects_in_slice(self.data, self._shape,
 *                                           self._strides, self.ndim, False)
 */
    __pyx_t_1 = (__pyx_v_self->dtype_is_object != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":217
 *         elif self.free_data:
 *             if self.dtype_is_object:
 *                 refcount_objects_in_slice(self.data, self._shape,             # <<<<<<<<<<<<<<
 *                                           self._strides, self.ndim, False)
 *             free(self.data)
 */
      __pyx_memoryview_refcount_objects_in_slice(__pyx_v_self->data, __pyx_v_self->_shape, __pyx_v_self->_strides, __pyx_v_self->ndim, 0);

      /* "View.MemoryView":216
 *             self.callback_free_data(self.data)
 *         elif self.free_data:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 refcount_objects_in_slice(self.data, self._shape,
 *                                           self._strides, self.ndim, False)
 */
    }

    /* "View.MemoryView":219
 *                 refcount_objects_in_slice(self.data, self._shape,
 *                                           self._strides, self.ndim, False)
 *             free(self.data)             # <<<<<<<<<<<<<<
 *         PyObject_Free(self._shape)
 * 
 */
    free(__pyx_v_self->data);

    /* "View.MemoryView":215
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 *         elif self.free_data:             # <<<<<<<<<<<<<<
 *             if self.dtype_is_object:
 *                 refcount_objects_in_slice(self.data, self._shape,
 */
  }
  __pyx_L3:;

  /* "View.MemoryView":220
 *                                           self._strides, self.ndim, False)
 *             free(self.data)
 *         PyObject_Free(self._shape)             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  PyObject_Free(__pyx_v_self->_shape);

  /* "View.MemoryView":212
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")
 * 
 *     def __dealloc__(array self):             # <<<<<<<<<<<<<<
 *         if self.callback_free_data != NULL:
 *             self.callback_free_data(self.data)
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":223
 * 
 *     @property
 *     def memview(self):             # <<<<<<<<<<<<<<
 *         return self.get_memview()
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_5array_7memview_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_5array_7memview_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_5array_7memview___get__(((struct __pyx_array_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":224
 *     @property
 *     def memview(self):
 *         return self.get_memview()             # <<<<<<<<<<<<<<
 * 
 *     @cname('get_memview')
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = ((struct __pyx_vtabstruct_array *)__pyx_v_self->__pyx_vtab)->get_memview(__pyx_v_self); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 224, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":223
 * 
 *     @property
 *     def memview(self):             # <<<<<<<<<<<<<<
 *         return self.get_memview()
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.array.memview.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":227
 * 
 *     @cname('get_memview')
 *     cdef get_memview(self):             # <<<<<<<<<<<<<<
 *         flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE
 *         return  memoryview(self, flags, self.dtype_is_object)
 */

static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *__pyx_v_self) {
  int __pyx_v_flags;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_memview", 0);

  /* "View.MemoryView":228
 *     @cname('get_memview')
 *     cdef get_memview(self):
 *         flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE             # <<<<<<<<<<<<<<
 *         return  memoryview(self, flags, self.dtype_is_object)
 * 
 */
  __pyx_v_flags = ((PyBUF_ANY_CONTIGUOUS | PyBUF_FORMAT) | PyBUF_WRITABLE);

  /* "View.MemoryView":229
 *     cdef get_memview(self):
 *         flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE
 *         return  memoryview(self, flags, self.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 *     def __len__(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_flags); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 229, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 229, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 229, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  PyTuple_SET_ITEM(__pyx_t_3, 0, ((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_2);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 229, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":227
 * 
 *     @cname('get_memview')
 *     cdef get_memview(self):             # <<<<<<<<<<<<<<
 *         flags =  PyBUF_ANY_CONTIGUOUS|PyBUF_FORMAT|PyBUF_WRITABLE
 *         return  memoryview(self, flags, self.dtype_is_object)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.array.get_memview", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":231
 *         return  memoryview(self, flags, self.dtype_is_object)
 * 
 *     def __len__(self):             # <<<<<<<<<<<<<<
 *         return self._shape[0]
 * 
 */

/* Python wrapper */
static Py_ssize_t __pyx_array___len__(PyObject *__pyx_v_self); /*proto*/
static Py_ssize_t __pyx_array___len__(PyObject *__pyx_v_self) {
  Py_ssize_t __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__len__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__len__(((struct __pyx_array_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static Py_ssize_t __pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__len__(struct __pyx_array_obj *__pyx_v_self) {
  Py_ssize_t __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__len__", 0);

  /* "View.MemoryView":232
 * 
 *     def __len__(self):
 *         return self._shape[0]             # <<<<<<<<<<<<<<
 * 
 *     def __getattr__(self, attr):
 */
  __pyx_r = (__pyx_v_self->_shape[0]);
  goto __pyx_L0;

  /* "View.MemoryView":231
 *         return  memoryview(self, flags, self.dtype_is_object)
 * 
 *     def __len__(self):             # <<<<<<<<<<<<<<
 *         return self._shape[0]
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":234
 *         return self._shape[0]
 * 
 *     def __getattr__(self, attr):             # <<<<<<<<<<<<<<
 *         return getattr(self.memview, attr)
 * 
 */

/* Python wrapper */
static PyObject *__pyx_array___getattr__(PyObject *__pyx_v_self, PyObject *__pyx_v_attr); /*proto*/
static PyObject *__pyx_array___getattr__(PyObject *__pyx_v_self, PyObject *__pyx_v_attr) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getattr__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getattr__(((struct __pyx_array_obj *)__pyx_v_self), ((PyObject *)__pyx_v_attr));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getattr__", 0);

  /* "View.MemoryView":235
 * 
 *     def __getattr__(self, attr):
 *         return getattr(self.memview, attr)             # <<<<<<<<<<<<<<
 * 
 *     def __getitem__(self, item):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_memview); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 235, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_GetAttr(__pyx_t_1, __pyx_v_attr); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 235, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":234
 *         return self._shape[0]
 * 
 *     def __getattr__(self, attr):             # <<<<<<<<<<<<<<
 *         return getattr(self.memview, attr)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.array.__getattr__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":237
 *         return getattr(self.memview, attr)
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.memview[item]
 * 
 */

/* Python wrapper */
static PyObject *__pyx_array___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item); /*proto*/
static PyObject *__pyx_array___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getitem__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__getitem__(((struct __pyx_array_obj *)__pyx_v_self), ((PyObject *)__pyx_v_item));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getitem__", 0);

  /* "View.MemoryView":238
 * 
 *     def __getitem__(self, item):
 *         return self.memview[item]             # <<<<<<<<<<<<<<
 * 
 *     def __setitem__(self, item, value):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_memview); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 238, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetItem(__pyx_t_1, __pyx_v_item); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 238, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":237
 *         return getattr(self.memview, attr)
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.memview[item]
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.array.__getitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":240
 *         return self.memview[item]
 * 
 *     def __setitem__(self, item, value):             # <<<<<<<<<<<<<<
 *         self.memview[item] = value
 * 
 */

/* Python wrapper */
static int __pyx_array___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /*proto*/
static int __pyx_array___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setitem__ (wrapper)", 0);
  __pyx_r = __pyx_array___pyx_pf_15View_dot_MemoryView_5array_12__setitem__(((struct __pyx_array_obj *)__pyx_v_self), ((PyObject *)__pyx_v_item), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_12__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setitem__", 0);

  /* "View.MemoryView":241
 * 
 *     def __setitem__(self, item, value):
 *         self.memview[item] = value             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_memview); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 241, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (unlikely(PyObject_SetItem(__pyx_t_1, __pyx_v_item, __pyx_v_value) < 0)) __PYX_ERR(0, 241, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "View.MemoryView":240
 *         return self.memview[item]
 * 
 *     def __setitem__(self, item, value):             # <<<<<<<<<<<<<<
 *         self.memview[item] = value
 * 
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.array.__setitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_array_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw___pyx_array_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_array___reduce_cython__(((struct __pyx_array_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_array___reduce_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__23, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 2, __pyx_L1_error)

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.array.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_array_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw___pyx_array_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_array_2__setstate_cython__(((struct __pyx_array_obj *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_array_2__setstate_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__24, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 4, __pyx_L1_error)

  /* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.array.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":245
 * 
 * @cname("__pyx_array_new")
 * cdef array array_cwrapper(tuple shape, Py_ssize_t itemsize, char *format,             # <<<<<<<<<<<<<<
 *                           char *mode, char *buf):
 *     cdef array result
 */

static struct __pyx_array_obj *__pyx_array_new(PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, char *__pyx_v_format, char *__pyx_v_mode, char *__pyx_v_buf) {
  struct __pyx_array_obj *__pyx_v_result = 0;
  struct __pyx_array_obj *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("array_cwrapper", 0);

  /* "View.MemoryView":249
 *     cdef array result
 * 
 *     if buf == NULL:             # <<<<<<<<<<<<<<
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 */
  __pyx_t_1 = ((__pyx_v_buf == NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":250
 * 
 *     if buf == NULL:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))             # <<<<<<<<<<<<<<
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),
 */
    __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_itemsize); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 250, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = __Pyx_PyBytes_FromString(__pyx_v_format); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 250, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = __Pyx_decode_c_string(__pyx_v_mode, 0, strlen(__pyx_v_mode), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 250, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyTuple_New(4); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 250, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_INCREF(__pyx_v_shape);
    __Pyx_GIVEREF(__pyx_v_shape);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_v_shape);
    __Pyx_GIVEREF(__pyx_t_2);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_2);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_t_3);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 3, __pyx_t_4);
    __pyx_t_2 = 0;
    __pyx_t_3 = 0;
    __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PyObject_Call(((PyObject *)__pyx_array_type), __pyx_t_5, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 250, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __pyx_v_result = ((struct __pyx_array_obj *)__pyx_t_4);
    __pyx_t_4 = 0;

    /* "View.MemoryView":249
 *     cdef array result
 * 
 *     if buf == NULL:             # <<<<<<<<<<<<<<
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":252
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),             # <<<<<<<<<<<<<<
 *                        allocate_buffer=False)
 *         result.data = buf
 */
  /*else*/ {
    __pyx_t_4 = PyInt_FromSsize_t(__pyx_v_itemsize); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 252, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = __Pyx_PyBytes_FromString(__pyx_v_format); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 252, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_3 = __Pyx_decode_c_string(__pyx_v_mode, 0, strlen(__pyx_v_mode), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 252, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_2 = PyTuple_New(4); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 252, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_INCREF(__pyx_v_shape);
    __Pyx_GIVEREF(__pyx_v_shape);
    PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_v_shape);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_2, 2, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_3);
    PyTuple_SET_ITEM(__pyx_t_2, 3, __pyx_t_3);
    __pyx_t_4 = 0;
    __pyx_t_5 = 0;
    __pyx_t_3 = 0;

    /* "View.MemoryView":253
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),
 *                        allocate_buffer=False)             # <<<<<<<<<<<<<<
 *         result.data = buf
 * 
 */
    __pyx_t_3 = __Pyx_PyDict_NewPresized(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 253, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_allocate_buffer, Py_False) < 0) __PYX_ERR(0, 253, __pyx_L1_error)

    /* "View.MemoryView":252
 *         result = array(shape, itemsize, format, mode.decode('ASCII'))
 *     else:
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),             # <<<<<<<<<<<<<<
 *                        allocate_buffer=False)
 *         result.data = buf
 */
    __pyx_t_5 = __Pyx_PyObject_Call(((PyObject *)__pyx_array_type), __pyx_t_2, __pyx_t_3); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 252, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_result = ((struct __pyx_array_obj *)__pyx_t_5);
    __pyx_t_5 = 0;

    /* "View.MemoryView":254
 *         result = array(shape, itemsize, format, mode.decode('ASCII'),
 *                        allocate_buffer=False)
 *         result.data = buf             # <<<<<<<<<<<<<<
 * 
 *     return result
 */
    __pyx_v_result->data = __pyx_v_buf;
  }
  __pyx_L3:;

  /* "View.MemoryView":256
 *         result.data = buf
 * 
 *     return result             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(((PyObject *)__pyx_r));
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = __pyx_v_result;
  goto __pyx_L0;

  /* "View.MemoryView":245
 * 
 * @cname("__pyx_array_new")
 * cdef array array_cwrapper(tuple shape, Py_ssize_t itemsize, char *format,             # <<<<<<<<<<<<<<
 *                           char *mode, char *buf):
 *     cdef array result
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.array_cwrapper", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XGIVEREF((PyObject *)__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":282
 * cdef class Enum(object):
 *     cdef object name
 *     def __init__(self, name):             # <<<<<<<<<<<<<<
 *         self.name = name
 *     def __repr__(self):
 */

/* Python wrapper */
static int __pyx_MemviewEnum___init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_MemviewEnum___init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_name = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_name,0};
    PyObject* values[1] = {0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_name)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(0, 282, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 1) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
    }
    __pyx_v_name = values[0];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__init__", 1, 1, 1, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 282, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("View.MemoryView.Enum.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(((struct __pyx_MemviewEnum_obj *)__pyx_v_self), __pyx_v_name);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__init__", 0);

  /* "View.MemoryView":283
 *     cdef object name
 *     def __init__(self, name):
 *         self.name = name             # <<<<<<<<<<<<<<
 *     def __repr__(self):
 *         return self.name
 */
  __Pyx_INCREF(__pyx_v_name);
  __Pyx_GIVEREF(__pyx_v_name);
  __Pyx_GOTREF(__pyx_v_self->name);
  __Pyx_DECREF(__pyx_v_self->name);
  __pyx_v_self->name = __pyx_v_name;

  /* "View.MemoryView":282
 * cdef class Enum(object):
 *     cdef object name
 *     def __init__(self, name):             # <<<<<<<<<<<<<<
 *         self.name = name
 *     def __repr__(self):
 */

  /* function exit code */
  __pyx_r = 0;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":284
 *     def __init__(self, name):
 *         self.name = name
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return self.name
 * 
 */

/* Python wrapper */
static PyObject *__pyx_MemviewEnum___repr__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_MemviewEnum___repr__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__repr__ (wrapper)", 0);
  __pyx_r = __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(((struct __pyx_MemviewEnum_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__repr__", 0);

  /* "View.MemoryView":285
 *         self.name = name
 *     def __repr__(self):
 *         return self.name             # <<<<<<<<<<<<<<
 * 
 * cdef generic = Enum("<strided and direct or indirect>")
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->name);
  __pyx_r = __pyx_v_self->name;
  goto __pyx_L0;

  /* "View.MemoryView":284
 *     def __init__(self, name):
 *         self.name = name
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return self.name
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     cdef tuple state
 *     cdef object _dict
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_MemviewEnum_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw___pyx_MemviewEnum_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_MemviewEnum___reduce_cython__(((struct __pyx_MemviewEnum_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_MemviewEnum___reduce_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self) {
  PyObject *__pyx_v_state = 0;
  PyObject *__pyx_v__dict = 0;
  int __pyx_v_use_setstate;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":5
 *     cdef object _dict
 *     cdef bint use_setstate
 *     state = (self.name,)             # <<<<<<<<<<<<<<
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:
 */
  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_v_self->name);
  __Pyx_GIVEREF(__pyx_v_self->name);
  PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v_self->name);
  __pyx_v_state = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "(tree fragment)":6
 *     cdef bint use_setstate
 *     state = (self.name,)
 *     _dict = getattr(self, '__dict__', None)             # <<<<<<<<<<<<<<
 *     if _dict is not None:
 *         state += (_dict,)
 */
  __pyx_t_1 = __Pyx_GetAttr3(((PyObject *)__pyx_v_self), __pyx_n_s_dict, Py_None); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 6, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v__dict = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "(tree fragment)":7
 *     state = (self.name,)
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:             # <<<<<<<<<<<<<<
 *         state += (_dict,)
 *         use_setstate = True
 */
  __pyx_t_2 = (__pyx_v__dict != Py_None);
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (__pyx_t_3) {

    /* "(tree fragment)":8
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:
 *         state += (_dict,)             # <<<<<<<<<<<<<<
 *         use_setstate = True
 *     else:
 */
    __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 8, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_v__dict);
    __Pyx_GIVEREF(__pyx_v__dict);
    PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v__dict);
    __pyx_t_4 = PyNumber_InPlaceAdd(__pyx_v_state, __pyx_t_1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 8, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF_SET(__pyx_v_state, ((PyObject*)__pyx_t_4));
    __pyx_t_4 = 0;

    /* "(tree fragment)":9
 *     if _dict is not None:
 *         state += (_dict,)
 *         use_setstate = True             # <<<<<<<<<<<<<<
 *     else:
 *         use_setstate = self.name is not None
 */
    __pyx_v_use_setstate = 1;

    /* "(tree fragment)":7
 *     state = (self.name,)
 *     _dict = getattr(self, '__dict__', None)
 *     if _dict is not None:             # <<<<<<<<<<<<<<
 *         state += (_dict,)
 *         use_setstate = True
 */
    goto __pyx_L3;
  }

  /* "(tree fragment)":11
 *         use_setstate = True
 *     else:
 *         use_setstate = self.name is not None             # <<<<<<<<<<<<<<
 *     if use_setstate:
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, None), state
 */
  /*else*/ {
    __pyx_t_3 = (__pyx_v_self->name != Py_None);
    __pyx_v_use_setstate = __pyx_t_3;
  }
  __pyx_L3:;

  /* "(tree fragment)":12
 *     else:
 *         use_setstate = self.name is not None
 *     if use_setstate:             # <<<<<<<<<<<<<<
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, None), state
 *     else:
 */
  __pyx_t_3 = (__pyx_v_use_setstate != 0);
  if (__pyx_t_3) {

    /* "(tree fragment)":13
 *         use_setstate = self.name is not None
 *     if use_setstate:
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, None), state             # <<<<<<<<<<<<<<
 *     else:
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, state)
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_GetModuleGlobalName(__pyx_t_4, __pyx_n_s_pyx_unpickle_Enum); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_1 = PyTuple_New(3); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_INCREF(__pyx_int_184977713);
    __Pyx_GIVEREF(__pyx_int_184977713);
    PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_int_184977713);
    __Pyx_INCREF(Py_None);
    __Pyx_GIVEREF(Py_None);
    PyTuple_SET_ITEM(__pyx_t_1, 2, Py_None);
    __pyx_t_5 = PyTuple_New(3); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 13, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_1);
    __Pyx_INCREF(__pyx_v_state);
    __Pyx_GIVEREF(__pyx_v_state);
    PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_v_state);
    __pyx_t_4 = 0;
    __pyx_t_1 = 0;
    __pyx_r = __pyx_t_5;
    __pyx_t_5 = 0;
    goto __pyx_L0;

    /* "(tree fragment)":12
 *     else:
 *         use_setstate = self.name is not None
 *     if use_setstate:             # <<<<<<<<<<<<<<
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, None), state
 *     else:
 */
  }

  /* "(tree fragment)":15
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, None), state
 *     else:
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, state)             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     __pyx_unpickle_Enum__set_state(self, __pyx_state)
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_pyx_unpickle_Enum); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __pyx_t_1 = PyTuple_New(3); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_GIVEREF(((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))));
    __Pyx_INCREF(__pyx_int_184977713);
    __Pyx_GIVEREF(__pyx_int_184977713);
    PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_int_184977713);
    __Pyx_INCREF(__pyx_v_state);
    __Pyx_GIVEREF(__pyx_v_state);
    PyTuple_SET_ITEM(__pyx_t_1, 2, __pyx_v_state);
    __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 15, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_GIVEREF(__pyx_t_5);
    PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_1);
    PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_1);
    __pyx_t_5 = 0;
    __pyx_t_1 = 0;
    __pyx_r = __pyx_t_4;
    __pyx_t_4 = 0;
    goto __pyx_L0;
  }

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     cdef tuple state
 *     cdef object _dict
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.Enum.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_state);
  __Pyx_XDECREF(__pyx_v__dict);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":16
 *     else:
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, state)
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_unpickle_Enum__set_state(self, __pyx_state)
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_MemviewEnum_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw___pyx_MemviewEnum_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_MemviewEnum_2__setstate_cython__(((struct __pyx_MemviewEnum_obj *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_MemviewEnum_2__setstate_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":17
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, state)
 * def __setstate_cython__(self, __pyx_state):
 *     __pyx_unpickle_Enum__set_state(self, __pyx_state)             # <<<<<<<<<<<<<<
 */
  if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(0, 17, __pyx_L1_error)
  __pyx_t_1 = __pyx_unpickle_Enum__set_state(__pyx_v_self, ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "(tree fragment)":16
 *     else:
 *         return __pyx_unpickle_Enum, (type(self), 0xb068931, state)
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_unpickle_Enum__set_state(self, __pyx_state)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.Enum.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":299
 * 
 * @cname('__pyx_align_pointer')
 * cdef void *align_pointer(void *memory, size_t alignment) nogil:             # <<<<<<<<<<<<<<
 *     "Align pointer memory on a given boundary"
 *     cdef Py_intptr_t aligned_p = <Py_intptr_t> memory
 */

static void *__pyx_align_pointer(void *__pyx_v_memory, size_t __pyx_v_alignment) {
  Py_intptr_t __pyx_v_aligned_p;
  size_t __pyx_v_offset;
  void *__pyx_r;
  int __pyx_t_1;

  /* "View.MemoryView":301
 * cdef void *align_pointer(void *memory, size_t alignment) nogil:
 *     "Align pointer memory on a given boundary"
 *     cdef Py_intptr_t aligned_p = <Py_intptr_t> memory             # <<<<<<<<<<<<<<
 *     cdef size_t offset
 * 
 */
  __pyx_v_aligned_p = ((Py_intptr_t)__pyx_v_memory);

  /* "View.MemoryView":305
 * 
 *     with cython.cdivision(True):
 *         offset = aligned_p % alignment             # <<<<<<<<<<<<<<
 * 
 *     if offset > 0:
 */
  __pyx_v_offset = (__pyx_v_aligned_p % __pyx_v_alignment);

  /* "View.MemoryView":307
 *         offset = aligned_p % alignment
 * 
 *     if offset > 0:             # <<<<<<<<<<<<<<
 *         aligned_p += alignment - offset
 * 
 */
  __pyx_t_1 = ((__pyx_v_offset > 0) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":308
 * 
 *     if offset > 0:
 *         aligned_p += alignment - offset             # <<<<<<<<<<<<<<
 * 
 *     return <void *> aligned_p
 */
    __pyx_v_aligned_p = (__pyx_v_aligned_p + (__pyx_v_alignment - __pyx_v_offset));

    /* "View.MemoryView":307
 *         offset = aligned_p % alignment
 * 
 *     if offset > 0:             # <<<<<<<<<<<<<<
 *         aligned_p += alignment - offset
 * 
 */
  }

  /* "View.MemoryView":310
 *         aligned_p += alignment - offset
 * 
 *     return <void *> aligned_p             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = ((void *)__pyx_v_aligned_p);
  goto __pyx_L0;

  /* "View.MemoryView":299
 * 
 * @cname('__pyx_align_pointer')
 * cdef void *align_pointer(void *memory, size_t alignment) nogil:             # <<<<<<<<<<<<<<
 *     "Align pointer memory on a given boundary"
 *     cdef Py_intptr_t aligned_p = <Py_intptr_t> memory
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":346
 *     cdef __Pyx_TypeInfo *typeinfo
 * 
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):             # <<<<<<<<<<<<<<
 *         self.obj = obj
 *         self.flags = flags
 */

/* Python wrapper */
static int __pyx_memoryview___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static int __pyx_memoryview___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v_obj = 0;
  int __pyx_v_flags;
  int __pyx_v_dtype_is_object;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_obj,&__pyx_n_s_flags,&__pyx_n_s_dtype_is_object,0};
    PyObject* values[3] = {0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_obj)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_flags)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 2, 3, 1); __PYX_ERR(0, 346, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (kw_args > 0) {
          PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_dtype_is_object);
          if (value) { values[2] = value; kw_args--; }
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) __PYX_ERR(0, 346, __pyx_L3_error)
      }
    } else {
      switch (PyTuple_GET_SIZE(__pyx_args)) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        break;
        default: goto __pyx_L5_argtuple_error;
      }
    }
    __pyx_v_obj = values[0];
    __pyx_v_flags = __Pyx_PyInt_As_int(values[1]); if (unlikely((__pyx_v_flags == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 346, __pyx_L3_error)
    if (values[2]) {
      __pyx_v_dtype_is_object = __Pyx_PyObject_IsTrue(values[2]); if (unlikely((__pyx_v_dtype_is_object == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 346, __pyx_L3_error)
    } else {
      __pyx_v_dtype_is_object = ((int)0);
    }
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 2, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 346, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("View.MemoryView.memoryview.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return -1;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_obj, __pyx_v_flags, __pyx_v_dtype_is_object);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__cinit__", 0);

  /* "View.MemoryView":347
 * 
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):
 *         self.obj = obj             # <<<<<<<<<<<<<<
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:
 */
  __Pyx_INCREF(__pyx_v_obj);
  __Pyx_GIVEREF(__pyx_v_obj);
  __Pyx_GOTREF(__pyx_v_self->obj);
  __Pyx_DECREF(__pyx_v_self->obj);
  __pyx_v_self->obj = __pyx_v_obj;

  /* "View.MemoryView":348
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):
 *         self.obj = obj
 *         self.flags = flags             # <<<<<<<<<<<<<<
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 */
  __pyx_v_self->flags = __pyx_v_flags;

  /* "View.MemoryView":349
 *         self.obj = obj
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:
 */
  __pyx_t_2 = (((PyObject *)Py_TYPE(((PyObject *)__pyx_v_self))) == ((PyObject *)__pyx_memoryview_type));
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (!__pyx_t_3) {
  } else {
    __pyx_t_1 = __pyx_t_3;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_3 = (__pyx_v_obj != Py_None);
  __pyx_t_2 = (__pyx_t_3 != 0);
  __pyx_t_1 = __pyx_t_2;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_1) {

    /* "View.MemoryView":350
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)             # <<<<<<<<<<<<<<
 *             if <PyObject *> self.view.obj == NULL:
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 */
    __pyx_t_4 = __Pyx_GetBuffer(__pyx_v_obj, (&__pyx_v_self->view), __pyx_v_flags); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(0, 350, __pyx_L1_error)

    /* "View.MemoryView":351
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:             # <<<<<<<<<<<<<<
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 *                 Py_INCREF(Py_None)
 */
    __pyx_t_1 = ((((PyObject *)__pyx_v_self->view.obj) == NULL) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":352
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:
 *                 (<__pyx_buffer *> &self.view).obj = Py_None             # <<<<<<<<<<<<<<
 *                 Py_INCREF(Py_None)
 * 
 */
      ((Py_buffer *)(&__pyx_v_self->view))->obj = Py_None;

      /* "View.MemoryView":353
 *             if <PyObject *> self.view.obj == NULL:
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 *                 Py_INCREF(Py_None)             # <<<<<<<<<<<<<<
 * 
 *         if not __PYX_CYTHON_ATOMICS_ENABLED():
 */
      Py_INCREF(Py_None);

      /* "View.MemoryView":351
 *         if type(self) is memoryview or obj is not None:
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:             # <<<<<<<<<<<<<<
 *                 (<__pyx_buffer *> &self.view).obj = Py_None
 *                 Py_INCREF(Py_None)
 */
    }

    /* "View.MemoryView":349
 *         self.obj = obj
 *         self.flags = flags
 *         if type(self) is memoryview or obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_GetBuffer(obj, &self.view, flags)
 *             if <PyObject *> self.view.obj == NULL:
 */
  }

  /* "View.MemoryView":355
 *                 Py_INCREF(Py_None)
 * 
 *         if not __PYX_CYTHON_ATOMICS_ENABLED():             # <<<<<<<<<<<<<<
 *             global __pyx_memoryview_thread_locks_used
 *             if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED:
 */
  __pyx_t_1 = ((!(__PYX_CYTHON_ATOMICS_ENABLED() != 0)) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":357
 *         if not __PYX_CYTHON_ATOMICS_ENABLED():
 *             global __pyx_memoryview_thread_locks_used
 *             if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED:             # <<<<<<<<<<<<<<
 *                 self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]
 *                 __pyx_memoryview_thread_locks_used += 1
 */
    __pyx_t_1 = ((__pyx_memoryview_thread_locks_used < 8) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":358
 *             global __pyx_memoryview_thread_locks_used
 *             if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED:
 *                 self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]             # <<<<<<<<<<<<<<
 *                 __pyx_memoryview_thread_locks_used += 1
 *             if self.lock is NULL:
 */
      __pyx_v_self->lock = (__pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]);

      /* "View.MemoryView":359
 *             if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED:
 *                 self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]
 *                 __pyx_memoryview_thread_locks_used += 1             # <<<<<<<<<<<<<<
 *             if self.lock is NULL:
 *                 self.lock = PyThread_allocate_lock()
 */
      __pyx_memoryview_thread_locks_used = (__pyx_memoryview_thread_locks_used + 1);

      /* "View.MemoryView":357
 *         if not __PYX_CYTHON_ATOMICS_ENABLED():
 *             global __pyx_memoryview_thread_locks_used
 *             if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED:             # <<<<<<<<<<<<<<
 *                 self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]
 *                 __pyx_memoryview_thread_locks_used += 1
 */
    }

    /* "View.MemoryView":360
 *                 self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]
 *                 __pyx_memoryview_thread_locks_used += 1
 *             if self.lock is NULL:             # <<<<<<<<<<<<<<
 *                 self.lock = PyThread_allocate_lock()
 *                 if self.lock is NULL:
 */
    __pyx_t_1 = ((__pyx_v_self->lock == NULL) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":361
 *                 __pyx_memoryview_thread_locks_used += 1
 *             if self.lock is NULL:
 *                 self.lock = PyThread_allocate_lock()             # <<<<<<<<<<<<<<
 *                 if self.lock is NULL:
 *                     raise MemoryError
 */
      __pyx_v_self->lock = PyThread_allocate_lock();

      /* "View.MemoryView":362
 *             if self.lock is NULL:
 *                 self.lock = PyThread_allocate_lock()
 *                 if self.lock is NULL:             # <<<<<<<<<<<<<<
 *                     raise MemoryError
 * 
 */
      __pyx_t_1 = ((__pyx_v_self->lock == NULL) != 0);
      if (unlikely(__pyx_t_1)) {

        /* "View.MemoryView":363
 *                 self.lock = PyThread_allocate_lock()
 *                 if self.lock is NULL:
 *                     raise MemoryError             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_FORMAT:
 */
        PyErr_NoMemory(); __PYX_ERR(0, 363, __pyx_L1_error)

        /* "View.MemoryView":362
 *             if self.lock is NULL:
 *                 self.lock = PyThread_allocate_lock()
 *                 if self.lock is NULL:             # <<<<<<<<<<<<<<
 *                     raise MemoryError
 * 
 */
      }

      /* "View.MemoryView":360
 *                 self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]
 *                 __pyx_memoryview_thread_locks_used += 1
 *             if self.lock is NULL:             # <<<<<<<<<<<<<<
 *                 self.lock = PyThread_allocate_lock()
 *                 if self.lock is NULL:
 */
    }

    /* "View.MemoryView":355
 *                 Py_INCREF(Py_None)
 * 
 *         if not __PYX_CYTHON_ATOMICS_ENABLED():             # <<<<<<<<<<<<<<
 *             global __pyx_memoryview_thread_locks_used
 *             if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED:
 */
  }

  /* "View.MemoryView":365
 *                     raise MemoryError
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0')
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_FORMAT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":366
 * 
 *         if flags & PyBUF_FORMAT:
 *             self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0')             # <<<<<<<<<<<<<<
 *         else:
 *             self.dtype_is_object = dtype_is_object
 */
    __pyx_t_2 = (((__pyx_v_self->view.format[0]) == 'O') != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L12_bool_binop_done;
    }
    __pyx_t_2 = (((__pyx_v_self->view.format[1]) == '\x00') != 0);
    __pyx_t_1 = __pyx_t_2;
    __pyx_L12_bool_binop_done:;
    __pyx_v_self->dtype_is_object = __pyx_t_1;

    /* "View.MemoryView":365
 *                     raise MemoryError
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0')
 *         else:
 */
    goto __pyx_L11;
  }

  /* "View.MemoryView":368
 *             self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0')
 *         else:
 *             self.dtype_is_object = dtype_is_object             # <<<<<<<<<<<<<<
 * 
 *         self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer(
 */
  /*else*/ {
    __pyx_v_self->dtype_is_object = __pyx_v_dtype_is_object;
  }
  __pyx_L11:;

  /* "View.MemoryView":370
 *             self.dtype_is_object = dtype_is_object
 * 
 *         self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer(             # <<<<<<<<<<<<<<
 *                   <void *> &self.acquisition_count[0], sizeof(__pyx_atomic_int))
 *         self.typeinfo = NULL
 */
  __pyx_v_self->acquisition_count_aligned_p = ((__pyx_atomic_int *)__pyx_align_pointer(((void *)(&(__pyx_v_self->acquisition_count[0]))), (sizeof(__pyx_atomic_int))));

  /* "View.MemoryView":372
 *         self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer(
 *                   <void *> &self.acquisition_count[0], sizeof(__pyx_atomic_int))
 *         self.typeinfo = NULL             # <<<<<<<<<<<<<<
 * 
 *     def __dealloc__(memoryview self):
 */
  __pyx_v_self->typeinfo = NULL;

  /* "View.MemoryView":346
 *     cdef __Pyx_TypeInfo *typeinfo
 * 
 *     def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False):             # <<<<<<<<<<<<<<
 *         self.obj = obj
 *         self.flags = flags
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_AddTraceback("View.MemoryView.memoryview.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":374
 *         self.typeinfo = NULL
 * 
 *     def __dealloc__(memoryview self):             # <<<<<<<<<<<<<<
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)
 */

/* Python wrapper */
static void __pyx_memoryview___dealloc__(PyObject *__pyx_v_self); /*proto*/
static void __pyx_memoryview___dealloc__(PyObject *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0);
  __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self) {
  int __pyx_v_i;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  int __pyx_t_5;
  PyThread_type_lock __pyx_t_6;
  PyThread_type_lock __pyx_t_7;
  __Pyx_RefNannySetupContext("__dealloc__", 0);

  /* "View.MemoryView":375
 * 
 *     def __dealloc__(memoryview self):
 *         if self.obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_ReleaseBuffer(&self.view)
 *         elif (<__pyx_buffer *> &self.view).obj == Py_None:
 */
  __pyx_t_1 = (__pyx_v_self->obj != Py_None);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":376
 *     def __dealloc__(memoryview self):
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)             # <<<<<<<<<<<<<<
 *         elif (<__pyx_buffer *> &self.view).obj == Py_None:
 * 
 */
    __Pyx_ReleaseBuffer((&__pyx_v_self->view));

    /* "View.MemoryView":375
 * 
 *     def __dealloc__(memoryview self):
 *         if self.obj is not None:             # <<<<<<<<<<<<<<
 *             __Pyx_ReleaseBuffer(&self.view)
 *         elif (<__pyx_buffer *> &self.view).obj == Py_None:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":377
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)
 *         elif (<__pyx_buffer *> &self.view).obj == Py_None:             # <<<<<<<<<<<<<<
 * 
 *             (<__pyx_buffer *> &self.view).obj = NULL
 */
  __pyx_t_2 = ((((Py_buffer *)(&__pyx_v_self->view))->obj == Py_None) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":379
 *         elif (<__pyx_buffer *> &self.view).obj == Py_None:
 * 
 *             (<__pyx_buffer *> &self.view).obj = NULL             # <<<<<<<<<<<<<<
 *             Py_DECREF(Py_None)
 * 
 */
    ((Py_buffer *)(&__pyx_v_self->view))->obj = NULL;

    /* "View.MemoryView":380
 * 
 *             (<__pyx_buffer *> &self.view).obj = NULL
 *             Py_DECREF(Py_None)             # <<<<<<<<<<<<<<
 * 
 *         cdef int i
 */
    Py_DECREF(Py_None);

    /* "View.MemoryView":377
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)
 *         elif (<__pyx_buffer *> &self.view).obj == Py_None:             # <<<<<<<<<<<<<<
 * 
 *             (<__pyx_buffer *> &self.view).obj = NULL
 */
  }
  __pyx_L3:;

  /* "View.MemoryView":384
 *         cdef int i
 *         global __pyx_memoryview_thread_locks_used
 *         if self.lock != NULL:             # <<<<<<<<<<<<<<
 *             for i in range(__pyx_memoryview_thread_locks_used):
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:
 */
  __pyx_t_2 = ((__pyx_v_self->lock != NULL) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":385
 *         global __pyx_memoryview_thread_locks_used
 *         if self.lock != NULL:
 *             for i in range(__pyx_memoryview_thread_locks_used):             # <<<<<<<<<<<<<<
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:
 *                     __pyx_memoryview_thread_locks_used -= 1
 */
    __pyx_t_3 = __pyx_memoryview_thread_locks_used;
    __pyx_t_4 = __pyx_t_3;
    for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
      __pyx_v_i = __pyx_t_5;

      /* "View.MemoryView":386
 *         if self.lock != NULL:
 *             for i in range(__pyx_memoryview_thread_locks_used):
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:             # <<<<<<<<<<<<<<
 *                     __pyx_memoryview_thread_locks_used -= 1
 *                     if i != __pyx_memoryview_thread_locks_used:
 */
      __pyx_t_2 = (((__pyx_memoryview_thread_locks[__pyx_v_i]) == __pyx_v_self->lock) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":387
 *             for i in range(__pyx_memoryview_thread_locks_used):
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:
 *                     __pyx_memoryview_thread_locks_used -= 1             # <<<<<<<<<<<<<<
 *                     if i != __pyx_memoryview_thread_locks_used:
 *                         __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = (
 */
        __pyx_memoryview_thread_locks_used = (__pyx_memoryview_thread_locks_used - 1);

        /* "View.MemoryView":388
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:
 *                     __pyx_memoryview_thread_locks_used -= 1
 *                     if i != __pyx_memoryview_thread_locks_used:             # <<<<<<<<<<<<<<
 *                         __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = (
 *                             __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used], __pyx_memoryview_thread_locks[i])
 */
        __pyx_t_2 = ((__pyx_v_i != __pyx_memoryview_thread_locks_used) != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":390
 *                     if i != __pyx_memoryview_thread_locks_used:
 *                         __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = (
 *                             __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used], __pyx_memoryview_thread_locks[i])             # <<<<<<<<<<<<<<
 *                     break
 *             else:
 */
          __pyx_t_6 = (__pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]);
          __pyx_t_7 = (__pyx_memoryview_thread_locks[__pyx_v_i]);

          /* "View.MemoryView":389
 *                     __pyx_memoryview_thread_locks_used -= 1
 *                     if i != __pyx_memoryview_thread_locks_used:
 *                         __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = (             # <<<<<<<<<<<<<<
 *                             __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used], __pyx_memoryview_thread_locks[i])
 *                     break
 */
          (__pyx_memoryview_thread_locks[__pyx_v_i]) = __pyx_t_6;
          (__pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]) = __pyx_t_7;

          /* "View.MemoryView":388
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:
 *                     __pyx_memoryview_thread_locks_used -= 1
 *                     if i != __pyx_memoryview_thread_locks_used:             # <<<<<<<<<<<<<<
 *                         __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = (
 *                             __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used], __pyx_memoryview_thread_locks[i])
 */
        }

        /* "View.MemoryView":391
 *                         __pyx_memoryview_thread_locks[i], __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] = (
 *                             __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used], __pyx_memoryview_thread_locks[i])
 *                     break             # <<<<<<<<<<<<<<
 *             else:
 *                 PyThread_free_lock(self.lock)
 */
        goto __pyx_L6_break;

        /* "View.MemoryView":386
 *         if self.lock != NULL:
 *             for i in range(__pyx_memoryview_thread_locks_used):
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:             # <<<<<<<<<<<<<<
 *                     __pyx_memoryview_thread_locks_used -= 1
 *                     if i != __pyx_memoryview_thread_locks_used:
 */
      }
    }
    /*else*/ {

      /* "View.MemoryView":393
 *                     break
 *             else:
 *                 PyThread_free_lock(self.lock)             # <<<<<<<<<<<<<<
 * 
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:
 */
      PyThread_free_lock(__pyx_v_self->lock);
    }
    __pyx_L6_break:;

    /* "View.MemoryView":384
 *         cdef int i
 *         global __pyx_memoryview_thread_locks_used
 *         if self.lock != NULL:             # <<<<<<<<<<<<<<
 *             for i in range(__pyx_memoryview_thread_locks_used):
 *                 if __pyx_memoryview_thread_locks[i] is self.lock:
 */
  }

  /* "View.MemoryView":374
 *         self.typeinfo = NULL
 * 
 *     def __dealloc__(memoryview self):             # <<<<<<<<<<<<<<
 *         if self.obj is not None:
 *             __Pyx_ReleaseBuffer(&self.view)
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":395
 *                 PyThread_free_lock(self.lock)
 * 
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:             # <<<<<<<<<<<<<<
 *         cdef Py_ssize_t dim
 *         cdef char *itemp = <char *> self.view.buf
 */

static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index) {
  Py_ssize_t __pyx_v_dim;
  char *__pyx_v_itemp;
  PyObject *__pyx_v_idx = NULL;
  char *__pyx_r;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  Py_ssize_t __pyx_t_3;
  PyObject *(*__pyx_t_4)(PyObject *);
  PyObject *__pyx_t_5 = NULL;
  Py_ssize_t __pyx_t_6;
  char *__pyx_t_7;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_item_pointer", 0);

  /* "View.MemoryView":397
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:
 *         cdef Py_ssize_t dim
 *         cdef char *itemp = <char *> self.view.buf             # <<<<<<<<<<<<<<
 * 
 *         for dim, idx in enumerate(index):
 */
  __pyx_v_itemp = ((char *)__pyx_v_self->view.buf);

  /* "View.MemoryView":399
 *         cdef char *itemp = <char *> self.view.buf
 * 
 *         for dim, idx in enumerate(index):             # <<<<<<<<<<<<<<
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)
 * 
 */
  __pyx_t_1 = 0;
  if (likely(PyList_CheckExact(__pyx_v_index)) || PyTuple_CheckExact(__pyx_v_index)) {
    __pyx_t_2 = __pyx_v_index; __Pyx_INCREF(__pyx_t_2); __pyx_t_3 = 0;
    __pyx_t_4 = NULL;
  } else {
    __pyx_t_3 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_index); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 399, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_4 = Py_TYPE(__pyx_t_2)->tp_iternext; if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 399, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_4)) {
      if (likely(PyList_CheckExact(__pyx_t_2))) {
        if (__pyx_t_3 >= PyList_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(0, 399, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 399, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      } else {
        if (__pyx_t_3 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(0, 399, __pyx_L1_error)
        #else
        __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 399, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_5);
        #endif
      }
    } else {
      __pyx_t_5 = __pyx_t_4(__pyx_t_2);
      if (unlikely(!__pyx_t_5)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(0, 399, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_5);
    }
    __Pyx_XDECREF_SET(__pyx_v_idx, __pyx_t_5);
    __pyx_t_5 = 0;
    __pyx_v_dim = __pyx_t_1;
    __pyx_t_1 = (__pyx_t_1 + 1);

    /* "View.MemoryView":400
 * 
 *         for dim, idx in enumerate(index):
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)             # <<<<<<<<<<<<<<
 * 
 *         return itemp
 */
    __pyx_t_6 = __Pyx_PyIndex_AsSsize_t(__pyx_v_idx); if (unlikely((__pyx_t_6 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 400, __pyx_L1_error)
    __pyx_t_7 = __pyx_pybuffer_index((&__pyx_v_self->view), __pyx_v_itemp, __pyx_t_6, __pyx_v_dim); if (unlikely(__pyx_t_7 == ((char *)NULL))) __PYX_ERR(0, 400, __pyx_L1_error)
    __pyx_v_itemp = __pyx_t_7;

    /* "View.MemoryView":399
 *         cdef char *itemp = <char *> self.view.buf
 * 
 *         for dim, idx in enumerate(index):             # <<<<<<<<<<<<<<
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)
 * 
 */
  }
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":402
 *             itemp = pybuffer_index(&self.view, itemp, idx, dim)
 * 
 *         return itemp             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_itemp;
  goto __pyx_L0;

  /* "View.MemoryView":395
 *                 PyThread_free_lock(self.lock)
 * 
 *     cdef char *get_item_pointer(memoryview self, object index) except NULL:             # <<<<<<<<<<<<<<
 *         cdef Py_ssize_t dim
 *         cdef char *itemp = <char *> self.view.buf
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview.get_item_pointer", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_idx);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":405
 * 
 * 
 *     def __getitem__(memoryview self, object index):             # <<<<<<<<<<<<<<
 *         if index is Ellipsis:
 *             return self
 */

/* Python wrapper */
static PyObject *__pyx_memoryview___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index); /*proto*/
static PyObject *__pyx_memoryview___getitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getitem__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(((struct __pyx_memoryview_obj *)__pyx_v_self), ((PyObject *)__pyx_v_index));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index) {
  PyObject *__pyx_v_have_slices = NULL;
  PyObject *__pyx_v_indices = NULL;
  char *__pyx_v_itemp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  char *__pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__getitem__", 0);

  /* "View.MemoryView":406
 * 
 *     def __getitem__(memoryview self, object index):
 *         if index is Ellipsis:             # <<<<<<<<<<<<<<
 *             return self
 * 
 */
  __pyx_t_1 = (__pyx_v_index == __pyx_builtin_Ellipsis);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":407
 *     def __getitem__(memoryview self, object index):
 *         if index is Ellipsis:
 *             return self             # <<<<<<<<<<<<<<
 * 
 *         have_slices, indices = _unellipsify(index, self.view.ndim)
 */
    __Pyx_XDECREF(__pyx_r);
    __Pyx_INCREF(((PyObject *)__pyx_v_self));
    __pyx_r = ((PyObject *)__pyx_v_self);
    goto __pyx_L0;

    /* "View.MemoryView":406
 * 
 *     def __getitem__(memoryview self, object index):
 *         if index is Ellipsis:             # <<<<<<<<<<<<<<
 *             return self
 * 
 */
  }

  /* "View.MemoryView":409
 *             return self
 * 
 *         have_slices, indices = _unellipsify(index, self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *         cdef char *itemp
 */
  __pyx_t_3 = _unellipsify(__pyx_v_index, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 409, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  if (likely(__pyx_t_3 != Py_None)) {
    PyObject* sequence = __pyx_t_3;
    Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
    if (unlikely(size != 2)) {
      if (size > 2) __Pyx_RaiseTooManyValuesError(2);
      else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
      __PYX_ERR(0, 409, __pyx_L1_error)
    }
    #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    __pyx_t_4 = PyTuple_GET_ITEM(sequence, 0); 
    __pyx_t_5 = PyTuple_GET_ITEM(sequence, 1); 
    __Pyx_INCREF(__pyx_t_4);
    __Pyx_INCREF(__pyx_t_5);
    #else
    __pyx_t_4 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 409, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 409, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    #endif
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  } else {
    __Pyx_RaiseNoneNotIterableError(); __PYX_ERR(0, 409, __pyx_L1_error)
  }
  __pyx_v_have_slices = __pyx_t_4;
  __pyx_t_4 = 0;
  __pyx_v_indices = __pyx_t_5;
  __pyx_t_5 = 0;

  /* "View.MemoryView":412
 * 
 *         cdef char *itemp
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             return memview_slice(self, indices)
 *         else:
 */
  __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_have_slices); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(0, 412, __pyx_L1_error)
  if (__pyx_t_2) {

    /* "View.MemoryView":413
 *         cdef char *itemp
 *         if have_slices:
 *             return memview_slice(self, indices)             # <<<<<<<<<<<<<<
 *         else:
 *             itemp = self.get_item_pointer(indices)
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_3 = ((PyObject *)__pyx_memview_slice(__pyx_v_self, __pyx_v_indices)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 413, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":412
 * 
 *         cdef char *itemp
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             return memview_slice(self, indices)
 *         else:
 */
  }

  /* "View.MemoryView":415
 *             return memview_slice(self, indices)
 *         else:
 *             itemp = self.get_item_pointer(indices)             # <<<<<<<<<<<<<<
 *             return self.convert_item_to_object(itemp)
 * 
 */
  /*else*/ {
    __pyx_t_6 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->get_item_pointer(__pyx_v_self, __pyx_v_indices); if (unlikely(__pyx_t_6 == ((char *)NULL))) __PYX_ERR(0, 415, __pyx_L1_error)
    __pyx_v_itemp = __pyx_t_6;

    /* "View.MemoryView":416
 *         else:
 *             itemp = self.get_item_pointer(indices)
 *             return self.convert_item_to_object(itemp)             # <<<<<<<<<<<<<<
 * 
 *     def __setitem__(memoryview self, object index, object value):
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_3 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->convert_item_to_object(__pyx_v_self, __pyx_v_itemp); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 416, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;
  }

  /* "View.MemoryView":405
 * 
 * 
 *     def __getitem__(memoryview self, object index):             # <<<<<<<<<<<<<<
 *         if index is Ellipsis:
 *             return self
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__getitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_have_slices);
  __Pyx_XDECREF(__pyx_v_indices);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":418
 *             return self.convert_item_to_object(itemp)
 * 
 *     def __setitem__(memoryview self, object index, object value):             # <<<<<<<<<<<<<<
 *         if self.view.readonly:
 *             raise TypeError("Cannot assign to read-only memoryview")
 */

/* Python wrapper */
static int __pyx_memoryview___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /*proto*/
static int __pyx_memoryview___setitem__(PyObject *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setitem__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(((struct __pyx_memoryview_obj *)__pyx_v_self), ((PyObject *)__pyx_v_index), ((PyObject *)__pyx_v_value));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value) {
  PyObject *__pyx_v_have_slices = NULL;
  PyObject *__pyx_v_obj = NULL;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setitem__", 0);
  __Pyx_INCREF(__pyx_v_index);

  /* "View.MemoryView":419
 * 
 *     def __setitem__(memoryview self, object index, object value):
 *         if self.view.readonly:             # <<<<<<<<<<<<<<
 *             raise TypeError("Cannot assign to read-only memoryview")
 * 
 */
  __pyx_t_1 = (__pyx_v_self->view.readonly != 0);
  if (unlikely(__pyx_t_1)) {

    /* "View.MemoryView":420
 *     def __setitem__(memoryview self, object index, object value):
 *         if self.view.readonly:
 *             raise TypeError("Cannot assign to read-only memoryview")             # <<<<<<<<<<<<<<
 * 
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 */
    __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__25, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 420, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_Raise(__pyx_t_2, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __PYX_ERR(0, 420, __pyx_L1_error)

    /* "View.MemoryView":419
 * 
 *     def __setitem__(memoryview self, object index, object value):
 *         if self.view.readonly:             # <<<<<<<<<<<<<<
 *             raise TypeError("Cannot assign to read-only memoryview")
 * 
 */
  }

  /* "View.MemoryView":422
 *             raise TypeError("Cannot assign to read-only memoryview")
 * 
 *         have_slices, index = _unellipsify(index, self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *         if have_slices:
 */
  __pyx_t_2 = _unellipsify(__pyx_v_index, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 422, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (likely(__pyx_t_2 != Py_None)) {
    PyObject* sequence = __pyx_t_2;
    Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
    if (unlikely(size != 2)) {
      if (size > 2) __Pyx_RaiseTooManyValuesError(2);
      else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
      __PYX_ERR(0, 422, __pyx_L1_error)
    }
    #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    __pyx_t_3 = PyTuple_GET_ITEM(sequence, 0); 
    __pyx_t_4 = PyTuple_GET_ITEM(sequence, 1); 
    __Pyx_INCREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_t_4);
    #else
    __pyx_t_3 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 422, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 422, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    #endif
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  } else {
    __Pyx_RaiseNoneNotIterableError(); __PYX_ERR(0, 422, __pyx_L1_error)
  }
  __pyx_v_have_slices = __pyx_t_3;
  __pyx_t_3 = 0;
  __Pyx_DECREF_SET(__pyx_v_index, __pyx_t_4);
  __pyx_t_4 = 0;

  /* "View.MemoryView":424
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 * 
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             obj = self.is_slice(value)
 *             if obj:
 */
  __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_v_have_slices); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(0, 424, __pyx_L1_error)
  if (__pyx_t_1) {

    /* "View.MemoryView":425
 * 
 *         if have_slices:
 *             obj = self.is_slice(value)             # <<<<<<<<<<<<<<
 *             if obj:
 *                 self.setitem_slice_assignment(self[index], obj)
 */
    __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->is_slice(__pyx_v_self, __pyx_v_value); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 425, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_v_obj = __pyx_t_2;
    __pyx_t_2 = 0;

    /* "View.MemoryView":426
 *         if have_slices:
 *             obj = self.is_slice(value)
 *             if obj:             # <<<<<<<<<<<<<<
 *                 self.setitem_slice_assignment(self[index], obj)
 *             else:
 */
    __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_v_obj); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(0, 426, __pyx_L1_error)
    if (__pyx_t_1) {

      /* "View.MemoryView":427
 *             obj = self.is_slice(value)
 *             if obj:
 *                 self.setitem_slice_assignment(self[index], obj)             # <<<<<<<<<<<<<<
 *             else:
 *                 self.setitem_slice_assign_scalar(self[index], value)
 */
      __pyx_t_2 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_self), __pyx_v_index); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 427, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __pyx_t_4 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->setitem_slice_assignment(__pyx_v_self, __pyx_t_2, __pyx_v_obj); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 427, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

      /* "View.MemoryView":426
 *         if have_slices:
 *             obj = self.is_slice(value)
 *             if obj:             # <<<<<<<<<<<<<<
 *                 self.setitem_slice_assignment(self[index], obj)
 *             else:
 */
      goto __pyx_L5;
    }

    /* "View.MemoryView":429
 *                 self.setitem_slice_assignment(self[index], obj)
 *             else:
 *                 self.setitem_slice_assign_scalar(self[index], value)             # <<<<<<<<<<<<<<
 *         else:
 *             self.setitem_indexed(index, value)
 */
    /*else*/ {
      __pyx_t_4 = __Pyx_PyObject_GetItem(((PyObject *)__pyx_v_self), __pyx_v_index); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 429, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_memoryview_type))))) __PYX_ERR(0, 429, __pyx_L1_error)
      __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->setitem_slice_assign_scalar(__pyx_v_self, ((struct __pyx_memoryview_obj *)__pyx_t_4), __pyx_v_value); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 429, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_2);
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    }
    __pyx_L5:;

    /* "View.MemoryView":424
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 * 
 *         if have_slices:             # <<<<<<<<<<<<<<
 *             obj = self.is_slice(value)
 *             if obj:
 */
    goto __pyx_L4;
  }

  /* "View.MemoryView":431
 *                 self.setitem_slice_assign_scalar(self[index], value)
 *         else:
 *             self.setitem_indexed(index, value)             # <<<<<<<<<<<<<<
 * 
 *     cdef is_slice(self, obj):
 */
  /*else*/ {
    __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->setitem_indexed(__pyx_v_self, __pyx_v_index, __pyx_v_value); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 431, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  }
  __pyx_L4:;

  /* "View.MemoryView":418
 *             return self.convert_item_to_object(itemp)
 * 
 *     def __setitem__(memoryview self, object index, object value):             # <<<<<<<<<<<<<<
 *         if self.view.readonly:
 *             raise TypeError("Cannot assign to read-only memoryview")
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__setitem__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_have_slices);
  __Pyx_XDECREF(__pyx_v_obj);
  __Pyx_XDECREF(__pyx_v_index);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":433
 *             self.setitem_indexed(index, value)
 * 
 *     cdef is_slice(self, obj):             # <<<<<<<<<<<<<<
 *         if not isinstance(obj, memoryview):
 *             try:
 */

static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_t_9;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("is_slice", 0);
  __Pyx_INCREF(__pyx_v_obj);

  /* "View.MemoryView":434
 * 
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):             # <<<<<<<<<<<<<<
 *             try:
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,
 */
  __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_obj, __pyx_memoryview_type); 
  __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":435
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):
 *             try:             # <<<<<<<<<<<<<<
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 */
    {
      __Pyx_PyThreadState_declare
      __Pyx_PyThreadState_assign
      __Pyx_ExceptionSave(&__pyx_t_3, &__pyx_t_4, &__pyx_t_5);
      __Pyx_XGOTREF(__pyx_t_3);
      __Pyx_XGOTREF(__pyx_t_4);
      __Pyx_XGOTREF(__pyx_t_5);
      /*try:*/ {

        /* "View.MemoryView":436
 *         if not isinstance(obj, memoryview):
 *             try:
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,             # <<<<<<<<<<<<<<
 *                                  self.dtype_is_object)
 *             except TypeError:
 */
        __pyx_t_6 = __Pyx_PyInt_From_int(((__pyx_v_self->flags & (~PyBUF_WRITABLE)) | PyBUF_ANY_CONTIGUOUS)); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 436, __pyx_L4_error)
        __Pyx_GOTREF(__pyx_t_6);

        /* "View.MemoryView":437
 *             try:
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)             # <<<<<<<<<<<<<<
 *             except TypeError:
 *                 return None
 */
        __pyx_t_7 = __Pyx_PyBool_FromLong(__pyx_v_self->dtype_is_object); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 437, __pyx_L4_error)
        __Pyx_GOTREF(__pyx_t_7);

        /* "View.MemoryView":436
 *         if not isinstance(obj, memoryview):
 *             try:
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,             # <<<<<<<<<<<<<<
 *                                  self.dtype_is_object)
 *             except TypeError:
 */
        __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 436, __pyx_L4_error)
        __Pyx_GOTREF(__pyx_t_8);
        __Pyx_INCREF(__pyx_v_obj);
        __Pyx_GIVEREF(__pyx_v_obj);
        PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_v_obj);
        __Pyx_GIVEREF(__pyx_t_6);
        PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_t_6);
        __Pyx_GIVEREF(__pyx_t_7);
        PyTuple_SET_ITEM(__pyx_t_8, 2, __pyx_t_7);
        __pyx_t_6 = 0;
        __pyx_t_7 = 0;
        __pyx_t_7 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_8, NULL); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 436, __pyx_L4_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        __Pyx_DECREF_SET(__pyx_v_obj, __pyx_t_7);
        __pyx_t_7 = 0;

        /* "View.MemoryView":435
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):
 *             try:             # <<<<<<<<<<<<<<
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 */
      }
      __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
      __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
      __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
      goto __pyx_L9_try_end;
      __pyx_L4_error:;
      __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
      __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
      __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;

      /* "View.MemoryView":438
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 *             except TypeError:             # <<<<<<<<<<<<<<
 *                 return None
 * 
 */
      __pyx_t_9 = __Pyx_PyErr_ExceptionMatches(__pyx_builtin_TypeError);
      if (__pyx_t_9) {
        __Pyx_AddTraceback("View.MemoryView.memoryview.is_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
        if (__Pyx_GetException(&__pyx_t_7, &__pyx_t_8, &__pyx_t_6) < 0) __PYX_ERR(0, 438, __pyx_L6_except_error)
        __Pyx_GOTREF(__pyx_t_7);
        __Pyx_GOTREF(__pyx_t_8);
        __Pyx_GOTREF(__pyx_t_6);

        /* "View.MemoryView":439
 *                                  self.dtype_is_object)
 *             except TypeError:
 *                 return None             # <<<<<<<<<<<<<<
 * 
 *         return obj
 */
        __Pyx_XDECREF(__pyx_r);
        __pyx_r = Py_None; __Pyx_INCREF(Py_None);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
        goto __pyx_L7_except_return;
      }
      goto __pyx_L6_except_error;
      __pyx_L6_except_error:;

      /* "View.MemoryView":435
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):
 *             try:             # <<<<<<<<<<<<<<
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,
 *                                  self.dtype_is_object)
 */
      __Pyx_XGIVEREF(__pyx_t_3);
      __Pyx_XGIVEREF(__pyx_t_4);
      __Pyx_XGIVEREF(__pyx_t_5);
      __Pyx_ExceptionReset(__pyx_t_3, __pyx_t_4, __pyx_t_5);
      goto __pyx_L1_error;
      __pyx_L7_except_return:;
      __Pyx_XGIVEREF(__pyx_t_3);
      __Pyx_XGIVEREF(__pyx_t_4);
      __Pyx_XGIVEREF(__pyx_t_5);
      __Pyx_ExceptionReset(__pyx_t_3, __pyx_t_4, __pyx_t_5);
      goto __pyx_L0;
      __pyx_L9_try_end:;
    }

    /* "View.MemoryView":434
 * 
 *     cdef is_slice(self, obj):
 *         if not isinstance(obj, memoryview):             # <<<<<<<<<<<<<<
 *             try:
 *                 obj = memoryview(obj, self.flags & ~PyBUF_WRITABLE | PyBUF_ANY_CONTIGUOUS,
 */
  }

  /* "View.MemoryView":441
 *                 return None
 * 
 *         return obj             # <<<<<<<<<<<<<<
 * 
 *     cdef setitem_slice_assignment(self, dst, src):
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_obj);
  __pyx_r = __pyx_v_obj;
  goto __pyx_L0;

  /* "View.MemoryView":433
 *             self.setitem_indexed(index, value)
 * 
 *     cdef is_slice(self, obj):             # <<<<<<<<<<<<<<
 *         if not isinstance(obj, memoryview):
 *             try:
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("View.MemoryView.memoryview.is_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_obj);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":443
 *         return obj
 * 
 *     cdef setitem_slice_assignment(self, dst, src):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice dst_slice
 *         cdef __Pyx_memviewslice src_slice
 */

static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_dst, PyObject *__pyx_v_src) {
  __Pyx_memviewslice __pyx_v_dst_slice;
  __Pyx_memviewslice __pyx_v_src_slice;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice *__pyx_t_1;
  __Pyx_memviewslice *__pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_t_5;
  int __pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("setitem_slice_assignment", 0);

  /* "View.MemoryView":447
 *         cdef __Pyx_memviewslice src_slice
 * 
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],             # <<<<<<<<<<<<<<
 *                                  get_slice_from_memview(dst, &dst_slice)[0],
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 */
  if (!(likely(((__pyx_v_src) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_src, __pyx_memoryview_type))))) __PYX_ERR(0, 447, __pyx_L1_error)
  __pyx_t_1 = __pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_src), (&__pyx_v_src_slice)); if (unlikely(__pyx_t_1 == ((__Pyx_memviewslice *)NULL))) __PYX_ERR(0, 447, __pyx_L1_error)

  /* "View.MemoryView":448
 * 
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],
 *                                  get_slice_from_memview(dst, &dst_slice)[0],             # <<<<<<<<<<<<<<
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 * 
 */
  if (!(likely(((__pyx_v_dst) == Py_None) || likely(__Pyx_TypeTest(__pyx_v_dst, __pyx_memoryview_type))))) __PYX_ERR(0, 448, __pyx_L1_error)
  __pyx_t_2 = __pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_dst), (&__pyx_v_dst_slice)); if (unlikely(__pyx_t_2 == ((__Pyx_memviewslice *)NULL))) __PYX_ERR(0, 448, __pyx_L1_error)

  /* "View.MemoryView":449
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],
 *                                  get_slice_from_memview(dst, &dst_slice)[0],
 *                                  src.ndim, dst.ndim, self.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):
 */
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_src, __pyx_n_s_ndim); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 449, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 449, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_dst, __pyx_n_s_ndim); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 449, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_5 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_5 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 449, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "View.MemoryView":447
 *         cdef __Pyx_memviewslice src_slice
 * 
 *         memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0],             # <<<<<<<<<<<<<<
 *                                  get_slice_from_memview(dst, &dst_slice)[0],
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 */
  __pyx_t_6 = __pyx_memoryview_copy_contents((__pyx_t_1[0]), (__pyx_t_2[0]), __pyx_t_4, __pyx_t_5, __pyx_v_self->dtype_is_object); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(0, 447, __pyx_L1_error)

  /* "View.MemoryView":443
 *         return obj
 * 
 *     cdef setitem_slice_assignment(self, dst, src):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice dst_slice
 *         cdef __Pyx_memviewslice src_slice
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.setitem_slice_assignment", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":451
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 * 
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):             # <<<<<<<<<<<<<<
 *         cdef int array[128]
 *         cdef void *tmp = NULL
 */

static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memoryview_obj *__pyx_v_self, struct __pyx_memoryview_obj *__pyx_v_dst, PyObject *__pyx_v_value) {
  int __pyx_v_array[0x80];
  void *__pyx_v_tmp;
  void *__pyx_v_item;
  __Pyx_memviewslice *__pyx_v_dst_slice;
  __Pyx_memviewslice __pyx_v_tmp_slice;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice *__pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_t_4;
  int __pyx_t_5;
  char const *__pyx_t_6;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  PyObject *__pyx_t_9 = NULL;
  PyObject *__pyx_t_10 = NULL;
  PyObject *__pyx_t_11 = NULL;
  PyObject *__pyx_t_12 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("setitem_slice_assign_scalar", 0);

  /* "View.MemoryView":453
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):
 *         cdef int array[128]
 *         cdef void *tmp = NULL             # <<<<<<<<<<<<<<
 *         cdef void *item
 * 
 */
  __pyx_v_tmp = NULL;

  /* "View.MemoryView":458
 *         cdef __Pyx_memviewslice *dst_slice
 *         cdef __Pyx_memviewslice tmp_slice
 *         dst_slice = get_slice_from_memview(dst, &tmp_slice)             # <<<<<<<<<<<<<<
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):
 */
  __pyx_t_1 = __pyx_memoryview_get_slice_from_memoryview(__pyx_v_dst, (&__pyx_v_tmp_slice)); if (unlikely(__pyx_t_1 == ((__Pyx_memviewslice *)NULL))) __PYX_ERR(0, 458, __pyx_L1_error)
  __pyx_v_dst_slice = __pyx_t_1;

  /* "View.MemoryView":460
 *         dst_slice = get_slice_from_memview(dst, &tmp_slice)
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):             # <<<<<<<<<<<<<<
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:
 */
  __pyx_t_2 = ((((size_t)__pyx_v_self->view.itemsize) > (sizeof(__pyx_v_array))) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":461
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):
 *             tmp = PyMem_Malloc(self.view.itemsize)             # <<<<<<<<<<<<<<
 *             if tmp == NULL:
 *                 raise MemoryError
 */
    __pyx_v_tmp = PyMem_Malloc(__pyx_v_self->view.itemsize);

    /* "View.MemoryView":462
 *         if <size_t>self.view.itemsize > sizeof(array):
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:             # <<<<<<<<<<<<<<
 *                 raise MemoryError
 *             item = tmp
 */
    __pyx_t_2 = ((__pyx_v_tmp == NULL) != 0);
    if (unlikely(__pyx_t_2)) {

      /* "View.MemoryView":463
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:
 *                 raise MemoryError             # <<<<<<<<<<<<<<
 *             item = tmp
 *         else:
 */
      PyErr_NoMemory(); __PYX_ERR(0, 463, __pyx_L1_error)

      /* "View.MemoryView":462
 *         if <size_t>self.view.itemsize > sizeof(array):
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:             # <<<<<<<<<<<<<<
 *                 raise MemoryError
 *             item = tmp
 */
    }

    /* "View.MemoryView":464
 *             if tmp == NULL:
 *                 raise MemoryError
 *             item = tmp             # <<<<<<<<<<<<<<
 *         else:
 *             item = <void *> array
 */
    __pyx_v_item = __pyx_v_tmp;

    /* "View.MemoryView":460
 *         dst_slice = get_slice_from_memview(dst, &tmp_slice)
 * 
 *         if <size_t>self.view.itemsize > sizeof(array):             # <<<<<<<<<<<<<<
 *             tmp = PyMem_Malloc(self.view.itemsize)
 *             if tmp == NULL:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":466
 *             item = tmp
 *         else:
 *             item = <void *> array             # <<<<<<<<<<<<<<
 * 
 *         try:
 */
  /*else*/ {
    __pyx_v_item = ((void *)__pyx_v_array);
  }
  __pyx_L3:;

  /* "View.MemoryView":468
 *             item = <void *> array
 * 
 *         try:             # <<<<<<<<<<<<<<
 *             if self.dtype_is_object:
 *                 (<PyObject **> item)[0] = <PyObject *> value
 */
  /*try:*/ {

    /* "View.MemoryView":469
 * 
 *         try:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 (<PyObject **> item)[0] = <PyObject *> value
 *             else:
 */
    __pyx_t_2 = (__pyx_v_self->dtype_is_object != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":470
 *         try:
 *             if self.dtype_is_object:
 *                 (<PyObject **> item)[0] = <PyObject *> value             # <<<<<<<<<<<<<<
 *             else:
 *                 self.assign_item_from_object(<char *> item, value)
 */
      (((PyObject **)__pyx_v_item)[0]) = ((PyObject *)__pyx_v_value);

      /* "View.MemoryView":469
 * 
 *         try:
 *             if self.dtype_is_object:             # <<<<<<<<<<<<<<
 *                 (<PyObject **> item)[0] = <PyObject *> value
 *             else:
 */
      goto __pyx_L8;
    }

    /* "View.MemoryView":472
 *                 (<PyObject **> item)[0] = <PyObject *> value
 *             else:
 *                 self.assign_item_from_object(<char *> item, value)             # <<<<<<<<<<<<<<
 * 
 * 
 */
    /*else*/ {
      __pyx_t_3 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->assign_item_from_object(__pyx_v_self, ((char *)__pyx_v_item), __pyx_v_value); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 472, __pyx_L6_error)
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    }
    __pyx_L8:;

    /* "View.MemoryView":476
 * 
 * 
 *             if self.view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,
 */
    __pyx_t_2 = ((__pyx_v_self->view.suboffsets != NULL) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":477
 * 
 *             if self.view.suboffsets != NULL:
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)             # <<<<<<<<<<<<<<
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,
 *                                 item, self.dtype_is_object)
 */
      __pyx_t_3 = assert_direct_dimensions(__pyx_v_self->view.suboffsets, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 477, __pyx_L6_error)
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

      /* "View.MemoryView":476
 * 
 * 
 *             if self.view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,
 */
    }

    /* "View.MemoryView":478
 *             if self.view.suboffsets != NULL:
 *                 assert_direct_dimensions(self.view.suboffsets, self.view.ndim)
 *             slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize,             # <<<<<<<<<<<<<<
 *                                 item, self.dtype_is_object)
 *         finally:
 */
    __pyx_memoryview_slice_assign_scalar(__pyx_v_dst_slice, __pyx_v_dst->view.ndim, __pyx_v_self->view.itemsize, __pyx_v_item, __pyx_v_self->dtype_is_object);
  }

  /* "View.MemoryView":481
 *                                 item, self.dtype_is_object)
 *         finally:
 *             PyMem_Free(tmp)             # <<<<<<<<<<<<<<
 * 
 *     cdef setitem_indexed(self, index, value):
 */
  /*finally:*/ {
    /*normal exit:*/{
      PyMem_Free(__pyx_v_tmp);
      goto __pyx_L7;
    }
    __pyx_L6_error:;
    /*exception exit:*/{
      __Pyx_PyThreadState_declare
      __Pyx_PyThreadState_assign
      __pyx_t_7 = 0; __pyx_t_8 = 0; __pyx_t_9 = 0; __pyx_t_10 = 0; __pyx_t_11 = 0; __pyx_t_12 = 0;
      __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
      if (PY_MAJOR_VERSION >= 3) __Pyx_ExceptionSwap(&__pyx_t_10, &__pyx_t_11, &__pyx_t_12);
      if ((PY_MAJOR_VERSION < 3) || unlikely(__Pyx_GetException(&__pyx_t_7, &__pyx_t_8, &__pyx_t_9) < 0)) __Pyx_ErrFetch(&__pyx_t_7, &__pyx_t_8, &__pyx_t_9);
      __Pyx_XGOTREF(__pyx_t_7);
      __Pyx_XGOTREF(__pyx_t_8);
      __Pyx_XGOTREF(__pyx_t_9);
      __Pyx_XGOTREF(__pyx_t_10);
      __Pyx_XGOTREF(__pyx_t_11);
      __Pyx_XGOTREF(__pyx_t_12);
      __pyx_t_4 = __pyx_lineno; __pyx_t_5 = __pyx_clineno; __pyx_t_6 = __pyx_filename;
      {
        PyMem_Free(__pyx_v_tmp);
      }
      if (PY_MAJOR_VERSION >= 3) {
        __Pyx_XGIVEREF(__pyx_t_10);
        __Pyx_XGIVEREF(__pyx_t_11);
        __Pyx_XGIVEREF(__pyx_t_12);
        __Pyx_ExceptionReset(__pyx_t_10, __pyx_t_11, __pyx_t_12);
      }
      __Pyx_XGIVEREF(__pyx_t_7);
      __Pyx_XGIVEREF(__pyx_t_8);
      __Pyx_XGIVEREF(__pyx_t_9);
      __Pyx_ErrRestore(__pyx_t_7, __pyx_t_8, __pyx_t_9);
      __pyx_t_7 = 0; __pyx_t_8 = 0; __pyx_t_9 = 0; __pyx_t_10 = 0; __pyx_t_11 = 0; __pyx_t_12 = 0;
      __pyx_lineno = __pyx_t_4; __pyx_clineno = __pyx_t_5; __pyx_filename = __pyx_t_6;
      goto __pyx_L1_error;
    }
    __pyx_L7:;
  }

  /* "View.MemoryView":451
 *                                  src.ndim, dst.ndim, self.dtype_is_object)
 * 
 *     cdef setitem_slice_assign_scalar(self, memoryview dst, value):             # <<<<<<<<<<<<<<
 *         cdef int array[128]
 *         cdef void *tmp = NULL
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.setitem_slice_assign_scalar", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":483
 *             PyMem_Free(tmp)
 * 
 *     cdef setitem_indexed(self, index, value):             # <<<<<<<<<<<<<<
 *         cdef char *itemp = self.get_item_pointer(index)
 *         self.assign_item_from_object(itemp, value)
 */

static PyObject *__pyx_memoryview_setitem_indexed(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value) {
  char *__pyx_v_itemp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  char *__pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("setitem_indexed", 0);

  /* "View.MemoryView":484
 * 
 *     cdef setitem_indexed(self, index, value):
 *         cdef char *itemp = self.get_item_pointer(index)             # <<<<<<<<<<<<<<
 *         self.assign_item_from_object(itemp, value)
 * 
 */
  __pyx_t_1 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->get_item_pointer(__pyx_v_self, __pyx_v_index); if (unlikely(__pyx_t_1 == ((char *)NULL))) __PYX_ERR(0, 484, __pyx_L1_error)
  __pyx_v_itemp = __pyx_t_1;

  /* "View.MemoryView":485
 *     cdef setitem_indexed(self, index, value):
 *         cdef char *itemp = self.get_item_pointer(index)
 *         self.assign_item_from_object(itemp, value)             # <<<<<<<<<<<<<<
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 */
  __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->assign_item_from_object(__pyx_v_self, __pyx_v_itemp, __pyx_v_value); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 485, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":483
 *             PyMem_Free(tmp)
 * 
 *     cdef setitem_indexed(self, index, value):             # <<<<<<<<<<<<<<
 *         cdef char *itemp = self.get_item_pointer(index)
 *         self.assign_item_from_object(itemp, value)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.setitem_indexed", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":487
 *         self.assign_item_from_object(itemp, value)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

static PyObject *__pyx_memoryview_convert_item_to_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp) {
  PyObject *__pyx_v_struct = NULL;
  PyObject *__pyx_v_bytesitem = 0;
  PyObject *__pyx_v_result = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  int __pyx_t_8;
  PyObject *__pyx_t_9 = NULL;
  size_t __pyx_t_10;
  int __pyx_t_11;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("convert_item_to_object", 0);

  /* "View.MemoryView":490
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 *         import struct             # <<<<<<<<<<<<<<
 *         cdef bytes bytesitem
 * 
 */
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_struct, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 490, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_struct = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "View.MemoryView":493
 *         cdef bytes bytesitem
 * 
 *         bytesitem = itemp[:self.view.itemsize]             # <<<<<<<<<<<<<<
 *         try:
 *             result = struct.unpack(self.view.format, bytesitem)
 */
  __pyx_t_1 = __Pyx_PyBytes_FromStringAndSize(__pyx_v_itemp + 0, __pyx_v_self->view.itemsize - 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 493, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_bytesitem = ((PyObject*)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":494
 * 
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:             # <<<<<<<<<<<<<<
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 */
  {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ExceptionSave(&__pyx_t_2, &__pyx_t_3, &__pyx_t_4);
    __Pyx_XGOTREF(__pyx_t_2);
    __Pyx_XGOTREF(__pyx_t_3);
    __Pyx_XGOTREF(__pyx_t_4);
    /*try:*/ {

      /* "View.MemoryView":495
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:
 *             result = struct.unpack(self.view.format, bytesitem)             # <<<<<<<<<<<<<<
 *         except struct.error:
 *             raise ValueError("Unable to convert item to object")
 */
      __pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_unpack); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 495, __pyx_L3_error)
      __Pyx_GOTREF(__pyx_t_5);
      __pyx_t_6 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 495, __pyx_L3_error)
      __Pyx_GOTREF(__pyx_t_6);
      __pyx_t_7 = NULL;
      __pyx_t_8 = 0;
      if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_5))) {
        __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_5);
        if (likely(__pyx_t_7)) {
          PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
          __Pyx_INCREF(__pyx_t_7);
          __Pyx_INCREF(function);
          __Pyx_DECREF_SET(__pyx_t_5, function);
          __pyx_t_8 = 1;
        }
      }
      #if CYTHON_FAST_PYCALL
      if (PyFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_t_6, __pyx_v_bytesitem};
        __pyx_t_1 = __Pyx_PyFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_8, 2+__pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 495, __pyx_L3_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      } else
      #endif
      #if CYTHON_FAST_PYCCALL
      if (__Pyx_PyFastCFunction_Check(__pyx_t_5)) {
        PyObject *__pyx_temp[3] = {__pyx_t_7, __pyx_t_6, __pyx_v_bytesitem};
        __pyx_t_1 = __Pyx_PyCFunction_FastCall(__pyx_t_5, __pyx_temp+1-__pyx_t_8, 2+__pyx_t_8); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 495, __pyx_L3_error)
        __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      } else
      #endif
      {
        __pyx_t_9 = PyTuple_New(2+__pyx_t_8); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 495, __pyx_L3_error)
        __Pyx_GOTREF(__pyx_t_9);
        if (__pyx_t_7) {
          __Pyx_GIVEREF(__pyx_t_7); PyTuple_SET_ITEM(__pyx_t_9, 0, __pyx_t_7); __pyx_t_7 = NULL;
        }
        __Pyx_GIVEREF(__pyx_t_6);
        PyTuple_SET_ITEM(__pyx_t_9, 0+__pyx_t_8, __pyx_t_6);
        __Pyx_INCREF(__pyx_v_bytesitem);
        __Pyx_GIVEREF(__pyx_v_bytesitem);
        PyTuple_SET_ITEM(__pyx_t_9, 1+__pyx_t_8, __pyx_v_bytesitem);
        __pyx_t_6 = 0;
        __pyx_t_1 = __Pyx_PyObject_Call(__pyx_t_5, __pyx_t_9, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 495, __pyx_L3_error)
        __Pyx_GOTREF(__pyx_t_1);
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      }
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __pyx_v_result = __pyx_t_1;
      __pyx_t_1 = 0;

      /* "View.MemoryView":494
 * 
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:             # <<<<<<<<<<<<<<
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 */
    }

    /* "View.MemoryView":499
 *             raise ValueError("Unable to convert item to object")
 *         else:
 *             if len(self.view.format) == 1:             # <<<<<<<<<<<<<<
 *                 return result[0]
 *             return result
 */
    /*else:*/ {
      __pyx_t_10 = strlen(__pyx_v_self->view.format); 
      __pyx_t_11 = ((__pyx_t_10 == 1) != 0);
      if (__pyx_t_11) {

        /* "View.MemoryView":500
 *         else:
 *             if len(self.view.format) == 1:
 *                 return result[0]             # <<<<<<<<<<<<<<
 *             return result
 * 
 */
        __Pyx_XDECREF(__pyx_r);
        __pyx_t_1 = __Pyx_GetItemInt(__pyx_v_result, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 500, __pyx_L5_except_error)
        __Pyx_GOTREF(__pyx_t_1);
        __pyx_r = __pyx_t_1;
        __pyx_t_1 = 0;
        goto __pyx_L6_except_return;

        /* "View.MemoryView":499
 *             raise ValueError("Unable to convert item to object")
 *         else:
 *             if len(self.view.format) == 1:             # <<<<<<<<<<<<<<
 *                 return result[0]
 *             return result
 */
      }

      /* "View.MemoryView":501
 *             if len(self.view.format) == 1:
 *                 return result[0]
 *             return result             # <<<<<<<<<<<<<<
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 */
      __Pyx_XDECREF(__pyx_r);
      __Pyx_INCREF(__pyx_v_result);
      __pyx_r = __pyx_v_result;
      goto __pyx_L6_except_return;
    }
    __pyx_L3_error:;
    __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;

    /* "View.MemoryView":496
 *         try:
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:             # <<<<<<<<<<<<<<
 *             raise ValueError("Unable to convert item to object")
 *         else:
 */
    __Pyx_ErrFetch(&__pyx_t_1, &__pyx_t_5, &__pyx_t_9);
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_error); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 496, __pyx_L5_except_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_8 = __Pyx_PyErr_GivenExceptionMatches(__pyx_t_1, __pyx_t_6);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_ErrRestore(__pyx_t_1, __pyx_t_5, __pyx_t_9);
    __pyx_t_1 = 0; __pyx_t_5 = 0; __pyx_t_9 = 0;
    if (__pyx_t_8) {
      __Pyx_AddTraceback("View.MemoryView.memoryview.convert_item_to_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
      if (__Pyx_GetException(&__pyx_t_9, &__pyx_t_5, &__pyx_t_1) < 0) __PYX_ERR(0, 496, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_9);
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_GOTREF(__pyx_t_1);

      /* "View.MemoryView":497
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 *             raise ValueError("Unable to convert item to object")             # <<<<<<<<<<<<<<
 *         else:
 *             if len(self.view.format) == 1:
 */
      __pyx_t_6 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__26, NULL); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 497, __pyx_L5_except_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_Raise(__pyx_t_6, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
      __PYX_ERR(0, 497, __pyx_L5_except_error)
    }
    goto __pyx_L5_except_error;
    __pyx_L5_except_error:;

    /* "View.MemoryView":494
 * 
 *         bytesitem = itemp[:self.view.itemsize]
 *         try:             # <<<<<<<<<<<<<<
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 */
    __Pyx_XGIVEREF(__pyx_t_2);
    __Pyx_XGIVEREF(__pyx_t_3);
    __Pyx_XGIVEREF(__pyx_t_4);
    __Pyx_ExceptionReset(__pyx_t_2, __pyx_t_3, __pyx_t_4);
    goto __pyx_L1_error;
    __pyx_L6_except_return:;
    __Pyx_XGIVEREF(__pyx_t_2);
    __Pyx_XGIVEREF(__pyx_t_3);
    __Pyx_XGIVEREF(__pyx_t_4);
    __Pyx_ExceptionReset(__pyx_t_2, __pyx_t_3, __pyx_t_4);
    goto __pyx_L0;
  }

  /* "View.MemoryView":487
 *         self.assign_item_from_object(itemp, value)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_AddTraceback("View.MemoryView.memoryview.convert_item_to_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_struct);
  __Pyx_XDECREF(__pyx_v_bytesitem);
  __Pyx_XDECREF(__pyx_v_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":503
 *             return result
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value) {
  PyObject *__pyx_v_struct = NULL;
  char __pyx_v_c;
  PyObject *__pyx_v_bytesvalue = 0;
  Py_ssize_t __pyx_v_i;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_t_7;
  PyObject *__pyx_t_8 = NULL;
  Py_ssize_t __pyx_t_9;
  PyObject *__pyx_t_10 = NULL;
  char *__pyx_t_11;
  char *__pyx_t_12;
  char *__pyx_t_13;
  char *__pyx_t_14;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("assign_item_from_object", 0);

  /* "View.MemoryView":506
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 *         import struct             # <<<<<<<<<<<<<<
 *         cdef char c
 *         cdef bytes bytesvalue
 */
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_struct, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 506, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_v_struct = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "View.MemoryView":511
 *         cdef Py_ssize_t i
 * 
 *         if isinstance(value, tuple):             # <<<<<<<<<<<<<<
 *             bytesvalue = struct.pack(self.view.format, *value)
 *         else:
 */
  __pyx_t_2 = PyTuple_Check(__pyx_v_value); 
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (__pyx_t_3) {

    /* "View.MemoryView":512
 * 
 *         if isinstance(value, tuple):
 *             bytesvalue = struct.pack(self.view.format, *value)             # <<<<<<<<<<<<<<
 *         else:
 *             bytesvalue = struct.pack(self.view.format, value)
 */
    __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_pack); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 512, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_4 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 512, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 512, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_GIVEREF(__pyx_t_4);
    PyTuple_SET_ITEM(__pyx_t_5, 0, __pyx_t_4);
    __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PySequence_Tuple(__pyx_v_value); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 512, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_6 = PyNumber_Add(__pyx_t_5, __pyx_t_4); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 512, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_1, __pyx_t_6, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 512, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (!(likely(PyBytes_CheckExact(__pyx_t_4))||((__pyx_t_4) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "bytes", Py_TYPE(__pyx_t_4)->tp_name), 0))) __PYX_ERR(0, 512, __pyx_L1_error)
    __pyx_v_bytesvalue = ((PyObject*)__pyx_t_4);
    __pyx_t_4 = 0;

    /* "View.MemoryView":511
 *         cdef Py_ssize_t i
 * 
 *         if isinstance(value, tuple):             # <<<<<<<<<<<<<<
 *             bytesvalue = struct.pack(self.view.format, *value)
 *         else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":514
 *             bytesvalue = struct.pack(self.view.format, *value)
 *         else:
 *             bytesvalue = struct.pack(self.view.format, value)             # <<<<<<<<<<<<<<
 * 
 *         for i, c in enumerate(bytesvalue):
 */
  /*else*/ {
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_struct, __pyx_n_s_pack); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 514, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_1 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 514, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = NULL;
    __pyx_t_7 = 0;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_6))) {
      __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_6);
      if (likely(__pyx_t_5)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_6);
        __Pyx_INCREF(__pyx_t_5);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_6, function);
        __pyx_t_7 = 1;
      }
    }
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(__pyx_t_6)) {
      PyObject *__pyx_temp[3] = {__pyx_t_5, __pyx_t_1, __pyx_v_value};
      __pyx_t_4 = __Pyx_PyFunction_FastCall(__pyx_t_6, __pyx_temp+1-__pyx_t_7, 2+__pyx_t_7); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 514, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    } else
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(__pyx_t_6)) {
      PyObject *__pyx_temp[3] = {__pyx_t_5, __pyx_t_1, __pyx_v_value};
      __pyx_t_4 = __Pyx_PyCFunction_FastCall(__pyx_t_6, __pyx_temp+1-__pyx_t_7, 2+__pyx_t_7); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 514, __pyx_L1_error)
      __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    } else
    #endif
    {
      __pyx_t_8 = PyTuple_New(2+__pyx_t_7); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 514, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_8);
      if (__pyx_t_5) {
        __Pyx_GIVEREF(__pyx_t_5); PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_t_5); __pyx_t_5 = NULL;
      }
      __Pyx_GIVEREF(__pyx_t_1);
      PyTuple_SET_ITEM(__pyx_t_8, 0+__pyx_t_7, __pyx_t_1);
      __Pyx_INCREF(__pyx_v_value);
      __Pyx_GIVEREF(__pyx_v_value);
      PyTuple_SET_ITEM(__pyx_t_8, 1+__pyx_t_7, __pyx_v_value);
      __pyx_t_1 = 0;
      __pyx_t_4 = __Pyx_PyObject_Call(__pyx_t_6, __pyx_t_8, NULL); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 514, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
    }
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (!(likely(PyBytes_CheckExact(__pyx_t_4))||((__pyx_t_4) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "bytes", Py_TYPE(__pyx_t_4)->tp_name), 0))) __PYX_ERR(0, 514, __pyx_L1_error)
    __pyx_v_bytesvalue = ((PyObject*)__pyx_t_4);
    __pyx_t_4 = 0;
  }
  __pyx_L3:;

  /* "View.MemoryView":516
 *             bytesvalue = struct.pack(self.view.format, value)
 * 
 *         for i, c in enumerate(bytesvalue):             # <<<<<<<<<<<<<<
 *             itemp[i] = c
 * 
 */
  __pyx_t_9 = 0;
  if (unlikely(__pyx_v_bytesvalue == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' is not iterable");
    __PYX_ERR(0, 516, __pyx_L1_error)
  }
  __Pyx_INCREF(__pyx_v_bytesvalue);
  __pyx_t_10 = __pyx_v_bytesvalue;
  __pyx_t_12 = PyBytes_AS_STRING(__pyx_t_10);
  __pyx_t_13 = (__pyx_t_12 + PyBytes_GET_SIZE(__pyx_t_10));
  for (__pyx_t_14 = __pyx_t_12; __pyx_t_14 < __pyx_t_13; __pyx_t_14++) {
    __pyx_t_11 = __pyx_t_14;
    __pyx_v_c = (__pyx_t_11[0]);

    /* "View.MemoryView":517
 * 
 *         for i, c in enumerate(bytesvalue):
 *             itemp[i] = c             # <<<<<<<<<<<<<<
 * 
 *     @cname('getbuffer')
 */
    __pyx_v_i = __pyx_t_9;

    /* "View.MemoryView":516
 *             bytesvalue = struct.pack(self.view.format, value)
 * 
 *         for i, c in enumerate(bytesvalue):             # <<<<<<<<<<<<<<
 *             itemp[i] = c
 * 
 */
    __pyx_t_9 = (__pyx_t_9 + 1);

    /* "View.MemoryView":517
 * 
 *         for i, c in enumerate(bytesvalue):
 *             itemp[i] = c             # <<<<<<<<<<<<<<
 * 
 *     @cname('getbuffer')
 */
    (__pyx_v_itemp[__pyx_v_i]) = __pyx_v_c;
  }
  __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;

  /* "View.MemoryView":503
 *             return result
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         """Only used if instantiated manually by the user, or if Cython doesn't
 *         know how to convert the type"""
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_XDECREF(__pyx_t_10);
  __Pyx_AddTraceback("View.MemoryView.memoryview.assign_item_from_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_struct);
  __Pyx_XDECREF(__pyx_v_bytesvalue);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":520
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         if flags & PyBUF_WRITABLE and self.view.readonly:
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")
 */

/* Python wrapper */
static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__getbuffer__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(((struct __pyx_memoryview_obj *)__pyx_v_self), ((Py_buffer *)__pyx_v_info), ((int)__pyx_v_flags));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  Py_ssize_t *__pyx_t_4;
  char *__pyx_t_5;
  void *__pyx_t_6;
  int __pyx_t_7;
  Py_ssize_t __pyx_t_8;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  if (__pyx_v_info == NULL) {
    PyErr_SetString(PyExc_BufferError, "PyObject_GetBuffer: view==NULL argument is obsolete");
    return -1;
  }
  __Pyx_RefNannySetupContext("__getbuffer__", 0);
  __pyx_v_info->obj = Py_None; __Pyx_INCREF(Py_None);
  __Pyx_GIVEREF(__pyx_v_info->obj);

  /* "View.MemoryView":521
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         if flags & PyBUF_WRITABLE and self.view.readonly:             # <<<<<<<<<<<<<<
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")
 * 
 */
  __pyx_t_2 = ((__pyx_v_flags & PyBUF_WRITABLE) != 0);
  if (__pyx_t_2) {
  } else {
    __pyx_t_1 = __pyx_t_2;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_2 = (__pyx_v_self->view.readonly != 0);
  __pyx_t_1 = __pyx_t_2;
  __pyx_L4_bool_binop_done:;
  if (unlikely(__pyx_t_1)) {

    /* "View.MemoryView":522
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         if flags & PyBUF_WRITABLE and self.view.readonly:
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_ND:
 */
    __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__27, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 522, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __PYX_ERR(0, 522, __pyx_L1_error)

    /* "View.MemoryView":521
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         if flags & PyBUF_WRITABLE and self.view.readonly:             # <<<<<<<<<<<<<<
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")
 * 
 */
  }

  /* "View.MemoryView":524
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")
 * 
 *         if flags & PyBUF_ND:             # <<<<<<<<<<<<<<
 *             info.shape = self.view.shape
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_ND) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":525
 * 
 *         if flags & PyBUF_ND:
 *             info.shape = self.view.shape             # <<<<<<<<<<<<<<
 *         else:
 *             info.shape = NULL
 */
    __pyx_t_4 = __pyx_v_self->view.shape;
    __pyx_v_info->shape = __pyx_t_4;

    /* "View.MemoryView":524
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")
 * 
 *         if flags & PyBUF_ND:             # <<<<<<<<<<<<<<
 *             info.shape = self.view.shape
 *         else:
 */
    goto __pyx_L6;
  }

  /* "View.MemoryView":527
 *             info.shape = self.view.shape
 *         else:
 *             info.shape = NULL             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_STRIDES:
 */
  /*else*/ {
    __pyx_v_info->shape = NULL;
  }
  __pyx_L6:;

  /* "View.MemoryView":529
 *             info.shape = NULL
 * 
 *         if flags & PyBUF_STRIDES:             # <<<<<<<<<<<<<<
 *             info.strides = self.view.strides
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_STRIDES) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":530
 * 
 *         if flags & PyBUF_STRIDES:
 *             info.strides = self.view.strides             # <<<<<<<<<<<<<<
 *         else:
 *             info.strides = NULL
 */
    __pyx_t_4 = __pyx_v_self->view.strides;
    __pyx_v_info->strides = __pyx_t_4;

    /* "View.MemoryView":529
 *             info.shape = NULL
 * 
 *         if flags & PyBUF_STRIDES:             # <<<<<<<<<<<<<<
 *             info.strides = self.view.strides
 *         else:
 */
    goto __pyx_L7;
  }

  /* "View.MemoryView":532
 *             info.strides = self.view.strides
 *         else:
 *             info.strides = NULL             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_INDIRECT:
 */
  /*else*/ {
    __pyx_v_info->strides = NULL;
  }
  __pyx_L7:;

  /* "View.MemoryView":534
 *             info.strides = NULL
 * 
 *         if flags & PyBUF_INDIRECT:             # <<<<<<<<<<<<<<
 *             info.suboffsets = self.view.suboffsets
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_INDIRECT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":535
 * 
 *         if flags & PyBUF_INDIRECT:
 *             info.suboffsets = self.view.suboffsets             # <<<<<<<<<<<<<<
 *         else:
 *             info.suboffsets = NULL
 */
    __pyx_t_4 = __pyx_v_self->view.suboffsets;
    __pyx_v_info->suboffsets = __pyx_t_4;

    /* "View.MemoryView":534
 *             info.strides = NULL
 * 
 *         if flags & PyBUF_INDIRECT:             # <<<<<<<<<<<<<<
 *             info.suboffsets = self.view.suboffsets
 *         else:
 */
    goto __pyx_L8;
  }

  /* "View.MemoryView":537
 *             info.suboffsets = self.view.suboffsets
 *         else:
 *             info.suboffsets = NULL             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_FORMAT:
 */
  /*else*/ {
    __pyx_v_info->suboffsets = NULL;
  }
  __pyx_L8:;

  /* "View.MemoryView":539
 *             info.suboffsets = NULL
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.view.format
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_flags & PyBUF_FORMAT) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":540
 * 
 *         if flags & PyBUF_FORMAT:
 *             info.format = self.view.format             # <<<<<<<<<<<<<<
 *         else:
 *             info.format = NULL
 */
    __pyx_t_5 = __pyx_v_self->view.format;
    __pyx_v_info->format = __pyx_t_5;

    /* "View.MemoryView":539
 *             info.suboffsets = NULL
 * 
 *         if flags & PyBUF_FORMAT:             # <<<<<<<<<<<<<<
 *             info.format = self.view.format
 *         else:
 */
    goto __pyx_L9;
  }

  /* "View.MemoryView":542
 *             info.format = self.view.format
 *         else:
 *             info.format = NULL             # <<<<<<<<<<<<<<
 * 
 *         info.buf = self.view.buf
 */
  /*else*/ {
    __pyx_v_info->format = NULL;
  }
  __pyx_L9:;

  /* "View.MemoryView":544
 *             info.format = NULL
 * 
 *         info.buf = self.view.buf             # <<<<<<<<<<<<<<
 *         info.ndim = self.view.ndim
 *         info.itemsize = self.view.itemsize
 */
  __pyx_t_6 = __pyx_v_self->view.buf;
  __pyx_v_info->buf = __pyx_t_6;

  /* "View.MemoryView":545
 * 
 *         info.buf = self.view.buf
 *         info.ndim = self.view.ndim             # <<<<<<<<<<<<<<
 *         info.itemsize = self.view.itemsize
 *         info.len = self.view.len
 */
  __pyx_t_7 = __pyx_v_self->view.ndim;
  __pyx_v_info->ndim = __pyx_t_7;

  /* "View.MemoryView":546
 *         info.buf = self.view.buf
 *         info.ndim = self.view.ndim
 *         info.itemsize = self.view.itemsize             # <<<<<<<<<<<<<<
 *         info.len = self.view.len
 *         info.readonly = self.view.readonly
 */
  __pyx_t_8 = __pyx_v_self->view.itemsize;
  __pyx_v_info->itemsize = __pyx_t_8;

  /* "View.MemoryView":547
 *         info.ndim = self.view.ndim
 *         info.itemsize = self.view.itemsize
 *         info.len = self.view.len             # <<<<<<<<<<<<<<
 *         info.readonly = self.view.readonly
 *         info.obj = self
 */
  __pyx_t_8 = __pyx_v_self->view.len;
  __pyx_v_info->len = __pyx_t_8;

  /* "View.MemoryView":548
 *         info.itemsize = self.view.itemsize
 *         info.len = self.view.len
 *         info.readonly = self.view.readonly             # <<<<<<<<<<<<<<
 *         info.obj = self
 * 
 */
  __pyx_t_1 = __pyx_v_self->view.readonly;
  __pyx_v_info->readonly = __pyx_t_1;

  /* "View.MemoryView":549
 *         info.len = self.view.len
 *         info.readonly = self.view.readonly
 *         info.obj = self             # <<<<<<<<<<<<<<
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")
 */
  __Pyx_INCREF(((PyObject *)__pyx_v_self));
  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
  __Pyx_GOTREF(__pyx_v_info->obj);
  __Pyx_DECREF(__pyx_v_info->obj);
  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);

  /* "View.MemoryView":520
 * 
 *     @cname('getbuffer')
 *     def __getbuffer__(self, Py_buffer *info, int flags):             # <<<<<<<<<<<<<<
 *         if flags & PyBUF_WRITABLE and self.view.readonly:
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")
 */

  /* function exit code */
  __pyx_r = 0;
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__getbuffer__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  if (__pyx_v_info->obj != NULL) {
    __Pyx_GOTREF(__pyx_v_info->obj);
    __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0;
  }
  goto __pyx_L2;
  __pyx_L0:;
  if (__pyx_v_info->obj == Py_None) {
    __Pyx_GOTREF(__pyx_v_info->obj);
    __Pyx_DECREF(__pyx_v_info->obj); __pyx_v_info->obj = 0;
  }
  __pyx_L2:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":555
 * 
 *     @property
 *     def T(self):             # <<<<<<<<<<<<<<
 *         cdef _memoryviewslice result = memoryview_copy(self)
 *         transpose_memslice(&result.from_slice)
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_1T_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_1T_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  struct __pyx_memoryviewslice_obj *__pyx_v_result = 0;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":556
 *     @property
 *     def T(self):
 *         cdef _memoryviewslice result = memoryview_copy(self)             # <<<<<<<<<<<<<<
 *         transpose_memslice(&result.from_slice)
 *         return result
 */
  __pyx_t_1 = __pyx_memoryview_copy_object(__pyx_v_self); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 556, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_memoryviewslice_type))))) __PYX_ERR(0, 556, __pyx_L1_error)
  __pyx_v_result = ((struct __pyx_memoryviewslice_obj *)__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":557
 *     def T(self):
 *         cdef _memoryviewslice result = memoryview_copy(self)
 *         transpose_memslice(&result.from_slice)             # <<<<<<<<<<<<<<
 *         return result
 * 
 */
  __pyx_t_2 = __pyx_memslice_transpose((&__pyx_v_result->from_slice)); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(0, 557, __pyx_L1_error)

  /* "View.MemoryView":558
 *         cdef _memoryviewslice result = memoryview_copy(self)
 *         transpose_memslice(&result.from_slice)
 *         return result             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = ((PyObject *)__pyx_v_result);
  goto __pyx_L0;

  /* "View.MemoryView":555
 * 
 *     @property
 *     def T(self):             # <<<<<<<<<<<<<<
 *         cdef _memoryviewslice result = memoryview_copy(self)
 *         transpose_memslice(&result.from_slice)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.T.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":561
 * 
 *     @property
 *     def base(self):             # <<<<<<<<<<<<<<
 *         return self.obj
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_4base_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_4base_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":562
 *     @property
 *     def base(self):
 *         return self.obj             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->obj);
  __pyx_r = __pyx_v_self->obj;
  goto __pyx_L0;

  /* "View.MemoryView":561
 * 
 *     @property
 *     def base(self):             # <<<<<<<<<<<<<<
 *         return self.obj
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":565
 * 
 *     @property
 *     def shape(self):             # <<<<<<<<<<<<<<
 *         return tuple([length for length in self.view.shape[:self.view.ndim]])
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_5shape_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_5shape_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_v_length;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  Py_ssize_t *__pyx_t_2;
  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":566
 *     @property
 *     def shape(self):
 *         return tuple([length for length in self.view.shape[:self.view.ndim]])             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 566, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_3 = (__pyx_v_self->view.shape + __pyx_v_self->view.ndim);
  for (__pyx_t_4 = __pyx_v_self->view.shape; __pyx_t_4 < __pyx_t_3; __pyx_t_4++) {
    __pyx_t_2 = __pyx_t_4;
    __pyx_v_length = (__pyx_t_2[0]);
    __pyx_t_5 = PyInt_FromSsize_t(__pyx_v_length); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 566, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    if (unlikely(__Pyx_ListComp_Append(__pyx_t_1, (PyObject*)__pyx_t_5))) __PYX_ERR(0, 566, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
  }
  __pyx_t_5 = PyList_AsTuple(((PyObject*)__pyx_t_1)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 566, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_r = __pyx_t_5;
  __pyx_t_5 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":565
 * 
 *     @property
 *     def shape(self):             # <<<<<<<<<<<<<<
 *         return tuple([length for length in self.view.shape[:self.view.ndim]])
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview.shape.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":569
 * 
 *     @property
 *     def strides(self):             # <<<<<<<<<<<<<<
 *         if self.view.strides == NULL:
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_7strides_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_7strides_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_v_stride;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;
  Py_ssize_t *__pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":570
 *     @property
 *     def strides(self):
 *         if self.view.strides == NULL:             # <<<<<<<<<<<<<<
 * 
 *             raise ValueError("Buffer view does not expose strides")
 */
  __pyx_t_1 = ((__pyx_v_self->view.strides == NULL) != 0);
  if (unlikely(__pyx_t_1)) {

    /* "View.MemoryView":572
 *         if self.view.strides == NULL:
 * 
 *             raise ValueError("Buffer view does not expose strides")             # <<<<<<<<<<<<<<
 * 
 *         return tuple([stride for stride in self.view.strides[:self.view.ndim]])
 */
    __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__28, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 572, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_Raise(__pyx_t_2, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __PYX_ERR(0, 572, __pyx_L1_error)

    /* "View.MemoryView":570
 *     @property
 *     def strides(self):
 *         if self.view.strides == NULL:             # <<<<<<<<<<<<<<
 * 
 *             raise ValueError("Buffer view does not expose strides")
 */
  }

  /* "View.MemoryView":574
 *             raise ValueError("Buffer view does not expose strides")
 * 
 *         return tuple([stride for stride in self.view.strides[:self.view.ndim]])             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 574, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_4 = (__pyx_v_self->view.strides + __pyx_v_self->view.ndim);
  for (__pyx_t_5 = __pyx_v_self->view.strides; __pyx_t_5 < __pyx_t_4; __pyx_t_5++) {
    __pyx_t_3 = __pyx_t_5;
    __pyx_v_stride = (__pyx_t_3[0]);
    __pyx_t_6 = PyInt_FromSsize_t(__pyx_v_stride); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 574, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    if (unlikely(__Pyx_ListComp_Append(__pyx_t_2, (PyObject*)__pyx_t_6))) __PYX_ERR(0, 574, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
  }
  __pyx_t_6 = PyList_AsTuple(((PyObject*)__pyx_t_2)); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 574, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_6);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_r = __pyx_t_6;
  __pyx_t_6 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":569
 * 
 *     @property
 *     def strides(self):             # <<<<<<<<<<<<<<
 *         if self.view.strides == NULL:
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("View.MemoryView.memoryview.strides.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":577
 * 
 *     @property
 *     def suboffsets(self):             # <<<<<<<<<<<<<<
 *         if self.view.suboffsets == NULL:
 *             return (-1,) * self.view.ndim
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_10suboffsets_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_10suboffsets_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_v_suboffset;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  Py_ssize_t *__pyx_t_4;
  Py_ssize_t *__pyx_t_5;
  Py_ssize_t *__pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":578
 *     @property
 *     def suboffsets(self):
 *         if self.view.suboffsets == NULL:             # <<<<<<<<<<<<<<
 *             return (-1,) * self.view.ndim
 * 
 */
  __pyx_t_1 = ((__pyx_v_self->view.suboffsets == NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":579
 *     def suboffsets(self):
 *         if self.view.suboffsets == NULL:
 *             return (-1,) * self.view.ndim             # <<<<<<<<<<<<<<
 * 
 *         return tuple([suboffset for suboffset in self.view.suboffsets[:self.view.ndim]])
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_self->view.ndim); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 579, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PyNumber_Multiply(__pyx_tuple__29, __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 579, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_r = __pyx_t_3;
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":578
 *     @property
 *     def suboffsets(self):
 *         if self.view.suboffsets == NULL:             # <<<<<<<<<<<<<<
 *             return (-1,) * self.view.ndim
 * 
 */
  }

  /* "View.MemoryView":581
 *             return (-1,) * self.view.ndim
 * 
 *         return tuple([suboffset for suboffset in self.view.suboffsets[:self.view.ndim]])             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 581, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_5 = (__pyx_v_self->view.suboffsets + __pyx_v_self->view.ndim);
  for (__pyx_t_6 = __pyx_v_self->view.suboffsets; __pyx_t_6 < __pyx_t_5; __pyx_t_6++) {
    __pyx_t_4 = __pyx_t_6;
    __pyx_v_suboffset = (__pyx_t_4[0]);
    __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_suboffset); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 581, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    if (unlikely(__Pyx_ListComp_Append(__pyx_t_3, (PyObject*)__pyx_t_2))) __PYX_ERR(0, 581, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  }
  __pyx_t_2 = PyList_AsTuple(((PyObject*)__pyx_t_3)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 581, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":577
 * 
 *     @property
 *     def suboffsets(self):             # <<<<<<<<<<<<<<
 *         if self.view.suboffsets == NULL:
 *             return (-1,) * self.view.ndim
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.suboffsets.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":584
 * 
 *     @property
 *     def ndim(self):             # <<<<<<<<<<<<<<
 *         return self.view.ndim
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_4ndim_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_4ndim_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":585
 *     @property
 *     def ndim(self):
 *         return self.view.ndim             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_self->view.ndim); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 585, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":584
 * 
 *     @property
 *     def ndim(self):             # <<<<<<<<<<<<<<
 *         return self.view.ndim
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.ndim.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":588
 * 
 *     @property
 *     def itemsize(self):             # <<<<<<<<<<<<<<
 *         return self.view.itemsize
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_8itemsize_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_8itemsize_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":589
 *     @property
 *     def itemsize(self):
 *         return self.view.itemsize             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = PyInt_FromSsize_t(__pyx_v_self->view.itemsize); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 589, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":588
 * 
 *     @property
 *     def itemsize(self):             # <<<<<<<<<<<<<<
 *         return self.view.itemsize
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.itemsize.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":592
 * 
 *     @property
 *     def nbytes(self):             # <<<<<<<<<<<<<<
 *         return self.size * self.view.itemsize
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_6nbytes_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_6nbytes_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":593
 *     @property
 *     def nbytes(self):
 *         return self.size * self.view.itemsize             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_size); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 593, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_self->view.itemsize); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 593, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyNumber_Multiply(__pyx_t_1, __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 593, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_r = __pyx_t_3;
  __pyx_t_3 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":592
 * 
 *     @property
 *     def nbytes(self):             # <<<<<<<<<<<<<<
 *         return self.size * self.view.itemsize
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.nbytes.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":596
 * 
 *     @property
 *     def size(self):             # <<<<<<<<<<<<<<
 *         if self._size is None:
 *             result = 1
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_4size_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_10memoryview_4size_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_v_result = NULL;
  PyObject *__pyx_v_length = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;
  Py_ssize_t *__pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":597
 *     @property
 *     def size(self):
 *         if self._size is None:             # <<<<<<<<<<<<<<
 *             result = 1
 * 
 */
  __pyx_t_1 = (__pyx_v_self->_size == Py_None);
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":598
 *     def size(self):
 *         if self._size is None:
 *             result = 1             # <<<<<<<<<<<<<<
 * 
 *             for length in self.view.shape[:self.view.ndim]:
 */
    __Pyx_INCREF(__pyx_int_1);
    __pyx_v_result = __pyx_int_1;

    /* "View.MemoryView":600
 *             result = 1
 * 
 *             for length in self.view.shape[:self.view.ndim]:             # <<<<<<<<<<<<<<
 *                 result *= length
 * 
 */
    __pyx_t_4 = (__pyx_v_self->view.shape + __pyx_v_self->view.ndim);
    for (__pyx_t_5 = __pyx_v_self->view.shape; __pyx_t_5 < __pyx_t_4; __pyx_t_5++) {
      __pyx_t_3 = __pyx_t_5;
      __pyx_t_6 = PyInt_FromSsize_t((__pyx_t_3[0])); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 600, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_XDECREF_SET(__pyx_v_length, __pyx_t_6);
      __pyx_t_6 = 0;

      /* "View.MemoryView":601
 * 
 *             for length in self.view.shape[:self.view.ndim]:
 *                 result *= length             # <<<<<<<<<<<<<<
 * 
 *             self._size = result
 */
      __pyx_t_6 = PyNumber_InPlaceMultiply(__pyx_v_result, __pyx_v_length); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 601, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_6);
      __Pyx_DECREF_SET(__pyx_v_result, __pyx_t_6);
      __pyx_t_6 = 0;
    }

    /* "View.MemoryView":603
 *                 result *= length
 * 
 *             self._size = result             # <<<<<<<<<<<<<<
 * 
 *         return self._size
 */
    __Pyx_INCREF(__pyx_v_result);
    __Pyx_GIVEREF(__pyx_v_result);
    __Pyx_GOTREF(__pyx_v_self->_size);
    __Pyx_DECREF(__pyx_v_self->_size);
    __pyx_v_self->_size = __pyx_v_result;

    /* "View.MemoryView":597
 *     @property
 *     def size(self):
 *         if self._size is None:             # <<<<<<<<<<<<<<
 *             result = 1
 * 
 */
  }

  /* "View.MemoryView":605
 *             self._size = result
 * 
 *         return self._size             # <<<<<<<<<<<<<<
 * 
 *     def __len__(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->_size);
  __pyx_r = __pyx_v_self->_size;
  goto __pyx_L0;

  /* "View.MemoryView":596
 * 
 *     @property
 *     def size(self):             # <<<<<<<<<<<<<<
 *         if self._size is None:
 *             result = 1
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("View.MemoryView.memoryview.size.__get__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_result);
  __Pyx_XDECREF(__pyx_v_length);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":607
 *         return self._size
 * 
 *     def __len__(self):             # <<<<<<<<<<<<<<
 *         if self.view.ndim >= 1:
 *             return self.view.shape[0]
 */

/* Python wrapper */
static Py_ssize_t __pyx_memoryview___len__(PyObject *__pyx_v_self); /*proto*/
static Py_ssize_t __pyx_memoryview___len__(PyObject *__pyx_v_self) {
  Py_ssize_t __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__len__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self) {
  Py_ssize_t __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("__len__", 0);

  /* "View.MemoryView":608
 * 
 *     def __len__(self):
 *         if self.view.ndim >= 1:             # <<<<<<<<<<<<<<
 *             return self.view.shape[0]
 * 
 */
  __pyx_t_1 = ((__pyx_v_self->view.ndim >= 1) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":609
 *     def __len__(self):
 *         if self.view.ndim >= 1:
 *             return self.view.shape[0]             # <<<<<<<<<<<<<<
 * 
 *         return 0
 */
    __pyx_r = (__pyx_v_self->view.shape[0]);
    goto __pyx_L0;

    /* "View.MemoryView":608
 * 
 *     def __len__(self):
 *         if self.view.ndim >= 1:             # <<<<<<<<<<<<<<
 *             return self.view.shape[0]
 * 
 */
  }

  /* "View.MemoryView":611
 *             return self.view.shape[0]
 * 
 *         return 0             # <<<<<<<<<<<<<<
 * 
 *     def __repr__(self):
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "View.MemoryView":607
 *         return self._size
 * 
 *     def __len__(self):             # <<<<<<<<<<<<<<
 *         if self.view.ndim >= 1:
 *             return self.view.shape[0]
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":613
 *         return 0
 * 
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,
 *                                                id(self))
 */

/* Python wrapper */
static PyObject *__pyx_memoryview___repr__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview___repr__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__repr__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__repr__", 0);

  /* "View.MemoryView":614
 * 
 *     def __repr__(self):
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,             # <<<<<<<<<<<<<<
 *                                                id(self))
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_base); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 614, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_class); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 614, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_name_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 614, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "View.MemoryView":615
 *     def __repr__(self):
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,
 *                                                id(self))             # <<<<<<<<<<<<<<
 * 
 *     def __str__(self):
 */
  __pyx_t_2 = __Pyx_PyObject_CallOneArg(__pyx_builtin_id, ((PyObject *)__pyx_v_self)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 615, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);

  /* "View.MemoryView":614
 * 
 *     def __repr__(self):
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,             # <<<<<<<<<<<<<<
 *                                                id(self))
 * 
 */
  __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 614, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_2);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyString_Format(__pyx_kp_s_MemoryView_of_r_at_0x_x, __pyx_t_3); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 614, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":613
 *         return 0
 * 
 *     def __repr__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r at 0x%x>" % (self.base.__class__.__name__,
 *                                                id(self))
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__repr__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":617
 *                                                id(self))
 * 
 *     def __str__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r object>" % (self.base.__class__.__name__,)
 * 
 */

/* Python wrapper */
static PyObject *__pyx_memoryview___str__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_memoryview___str__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__str__ (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__str__", 0);

  /* "View.MemoryView":618
 * 
 *     def __str__(self):
 *         return "<MemoryView of %r object>" % (self.base.__class__.__name__,)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_self), __pyx_n_s_base); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 618, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_class); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 618, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_name_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 618, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 618, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
  __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_PyString_Format(__pyx_kp_s_MemoryView_of_r_object, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 618, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":617
 *                                                id(self))
 * 
 *     def __str__(self):             # <<<<<<<<<<<<<<
 *         return "<MemoryView of %r object>" % (self.base.__class__.__name__,)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__str__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":621
 * 
 * 
 *     def is_c_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_is_c_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_is_c_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("is_c_contig (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice *__pyx_v_mslice;
  __Pyx_memviewslice __pyx_v_tmp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice *__pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("is_c_contig", 0);

  /* "View.MemoryView":624
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)             # <<<<<<<<<<<<<<
 *         return slice_is_contig(mslice[0], 'C', self.view.ndim)
 * 
 */
  __pyx_t_1 = __pyx_memoryview_get_slice_from_memoryview(__pyx_v_self, (&__pyx_v_tmp)); if (unlikely(__pyx_t_1 == ((__Pyx_memviewslice *)NULL))) __PYX_ERR(0, 624, __pyx_L1_error)
  __pyx_v_mslice = __pyx_t_1;

  /* "View.MemoryView":625
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)
 *         return slice_is_contig(mslice[0], 'C', self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *     def is_f_contig(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig((__pyx_v_mslice[0]), 'C', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 625, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":621
 * 
 * 
 *     def is_c_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.is_c_contig", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":627
 *         return slice_is_contig(mslice[0], 'C', self.view.ndim)
 * 
 *     def is_f_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_is_f_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_is_f_contig(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("is_f_contig (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice *__pyx_v_mslice;
  __Pyx_memviewslice __pyx_v_tmp;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice *__pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("is_f_contig", 0);

  /* "View.MemoryView":630
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)             # <<<<<<<<<<<<<<
 *         return slice_is_contig(mslice[0], 'F', self.view.ndim)
 * 
 */
  __pyx_t_1 = __pyx_memoryview_get_slice_from_memoryview(__pyx_v_self, (&__pyx_v_tmp)); if (unlikely(__pyx_t_1 == ((__Pyx_memviewslice *)NULL))) __PYX_ERR(0, 630, __pyx_L1_error)
  __pyx_v_mslice = __pyx_t_1;

  /* "View.MemoryView":631
 *         cdef __Pyx_memviewslice tmp
 *         mslice = get_slice_from_memview(self, &tmp)
 *         return slice_is_contig(mslice[0], 'F', self.view.ndim)             # <<<<<<<<<<<<<<
 * 
 *     def copy(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_memviewslice_is_contig((__pyx_v_mslice[0]), 'F', __pyx_v_self->view.ndim)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 631, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":627
 *         return slice_is_contig(mslice[0], 'C', self.view.ndim)
 * 
 *     def is_f_contig(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice *mslice
 *         cdef __Pyx_memviewslice tmp
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.is_f_contig", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":633
 *         return slice_is_contig(mslice[0], 'F', self.view.ndim)
 * 
 *     def copy(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice mslice
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_copy(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_copy(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("copy (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice __pyx_v_mslice;
  int __pyx_v_flags;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("copy", 0);

  /* "View.MemoryView":635
 *     def copy(self):
 *         cdef __Pyx_memviewslice mslice
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS             # <<<<<<<<<<<<<<
 * 
 *         slice_copy(self, &mslice)
 */
  __pyx_v_flags = (__pyx_v_self->flags & (~PyBUF_F_CONTIGUOUS));

  /* "View.MemoryView":637
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS
 * 
 *         slice_copy(self, &mslice)             # <<<<<<<<<<<<<<
 *         mslice = slice_copy_contig(&mslice, "c", self.view.ndim,
 *                                    self.view.itemsize,
 */
  __pyx_memoryview_slice_copy(__pyx_v_self, (&__pyx_v_mslice));

  /* "View.MemoryView":638
 * 
 *         slice_copy(self, &mslice)
 *         mslice = slice_copy_contig(&mslice, "c", self.view.ndim,             # <<<<<<<<<<<<<<
 *                                    self.view.itemsize,
 *                                    flags|PyBUF_C_CONTIGUOUS,
 */
  __pyx_t_1 = __pyx_memoryview_copy_new_contig((&__pyx_v_mslice), ((char *)"c"), __pyx_v_self->view.ndim, __pyx_v_self->view.itemsize, (__pyx_v_flags | PyBUF_C_CONTIGUOUS), __pyx_v_self->dtype_is_object); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 638, __pyx_L1_error)
  __pyx_v_mslice = __pyx_t_1;

  /* "View.MemoryView":643
 *                                    self.dtype_is_object)
 * 
 *         return memoryview_copy_from_slice(self, &mslice)             # <<<<<<<<<<<<<<
 * 
 *     def copy_fortran(self):
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = __pyx_memoryview_copy_object_from_slice(__pyx_v_self, (&__pyx_v_mslice)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 643, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":633
 *         return slice_is_contig(mslice[0], 'F', self.view.ndim)
 * 
 *     def copy(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice mslice
 *         cdef int flags = self.flags & ~PyBUF_F_CONTIGUOUS
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.copy", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":645
 *         return memoryview_copy_from_slice(self, &mslice)
 * 
 *     def copy_fortran(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice src, dst
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS
 */

/* Python wrapper */
static PyObject *__pyx_memoryview_copy_fortran(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_memoryview_copy_fortran(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("copy_fortran (wrapper)", 0);
  __pyx_r = __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self) {
  __Pyx_memviewslice __pyx_v_src;
  __Pyx_memviewslice __pyx_v_dst;
  int __pyx_v_flags;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_memviewslice __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("copy_fortran", 0);

  /* "View.MemoryView":647
 *     def copy_fortran(self):
 *         cdef __Pyx_memviewslice src, dst
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS             # <<<<<<<<<<<<<<
 * 
 *         slice_copy(self, &src)
 */
  __pyx_v_flags = (__pyx_v_self->flags & (~PyBUF_C_CONTIGUOUS));

  /* "View.MemoryView":649
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS
 * 
 *         slice_copy(self, &src)             # <<<<<<<<<<<<<<
 *         dst = slice_copy_contig(&src, "fortran", self.view.ndim,
 *                                 self.view.itemsize,
 */
  __pyx_memoryview_slice_copy(__pyx_v_self, (&__pyx_v_src));

  /* "View.MemoryView":650
 * 
 *         slice_copy(self, &src)
 *         dst = slice_copy_contig(&src, "fortran", self.view.ndim,             # <<<<<<<<<<<<<<
 *                                 self.view.itemsize,
 *                                 flags|PyBUF_F_CONTIGUOUS,
 */
  __pyx_t_1 = __pyx_memoryview_copy_new_contig((&__pyx_v_src), ((char *)"fortran"), __pyx_v_self->view.ndim, __pyx_v_self->view.itemsize, (__pyx_v_flags | PyBUF_F_CONTIGUOUS), __pyx_v_self->dtype_is_object); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 650, __pyx_L1_error)
  __pyx_v_dst = __pyx_t_1;

  /* "View.MemoryView":655
 *                                 self.dtype_is_object)
 * 
 *         return memoryview_copy_from_slice(self, &dst)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_2 = __pyx_memoryview_copy_object_from_slice(__pyx_v_self, (&__pyx_v_dst)); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 655, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_r = __pyx_t_2;
  __pyx_t_2 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":645
 *         return memoryview_copy_from_slice(self, &mslice)
 * 
 *     def copy_fortran(self):             # <<<<<<<<<<<<<<
 *         cdef __Pyx_memviewslice src, dst
 *         cdef int flags = self.flags & ~PyBUF_C_CONTIGUOUS
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView.memoryview.copy_fortran", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_memoryview_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw___pyx_memoryview_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_memoryview___reduce_cython__(((struct __pyx_memoryview_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_memoryview___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__30, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 2, __pyx_L1_error)

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_memoryview_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw___pyx_memoryview_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_memoryview_2__setstate_cython__(((struct __pyx_memoryview_obj *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_memoryview_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__31, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 4, __pyx_L1_error)

  /* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":659
 * 
 * @cname('__pyx_memoryview_new')
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):             # <<<<<<<<<<<<<<
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo
 */

static PyObject *__pyx_memoryview_new(PyObject *__pyx_v_o, int __pyx_v_flags, int __pyx_v_dtype_is_object, __Pyx_TypeInfo *__pyx_v_typeinfo) {
  struct __pyx_memoryview_obj *__pyx_v_result = 0;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_cwrapper", 0);

  /* "View.MemoryView":660
 * @cname('__pyx_memoryview_new')
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)             # <<<<<<<<<<<<<<
 *     result.typeinfo = typeinfo
 *     return result
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_flags); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 660, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 660, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 660, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(__pyx_v_o);
  __Pyx_GIVEREF(__pyx_v_o);
  PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_o);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_2);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryview_type), __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 660, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_result = ((struct __pyx_memoryview_obj *)__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":661
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo             # <<<<<<<<<<<<<<
 *     return result
 * 
 */
  __pyx_v_result->typeinfo = __pyx_v_typeinfo;

  /* "View.MemoryView":662
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo
 *     return result             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_check')
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = ((PyObject *)__pyx_v_result);
  goto __pyx_L0;

  /* "View.MemoryView":659
 * 
 * @cname('__pyx_memoryview_new')
 * cdef memoryview_cwrapper(object o, int flags, bint dtype_is_object, __Pyx_TypeInfo *typeinfo):             # <<<<<<<<<<<<<<
 *     cdef memoryview result = memoryview(o, flags, dtype_is_object)
 *     result.typeinfo = typeinfo
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview_cwrapper", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":665
 * 
 * @cname('__pyx_memoryview_check')
 * cdef inline bint memoryview_check(object o):             # <<<<<<<<<<<<<<
 *     return isinstance(o, memoryview)
 * 
 */

static CYTHON_INLINE int __pyx_memoryview_check(PyObject *__pyx_v_o) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  __Pyx_RefNannySetupContext("memoryview_check", 0);

  /* "View.MemoryView":666
 * @cname('__pyx_memoryview_check')
 * cdef inline bint memoryview_check(object o):
 *     return isinstance(o, memoryview)             # <<<<<<<<<<<<<<
 * 
 * cdef tuple _unellipsify(object index, int ndim):
 */
  __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_o, __pyx_memoryview_type); 
  __pyx_r = __pyx_t_1;
  goto __pyx_L0;

  /* "View.MemoryView":665
 * 
 * @cname('__pyx_memoryview_check')
 * cdef inline bint memoryview_check(object o):             # <<<<<<<<<<<<<<
 *     return isinstance(o, memoryview)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":668
 *     return isinstance(o, memoryview)
 * 
 * cdef tuple _unellipsify(object index, int ndim):             # <<<<<<<<<<<<<<
 *     """
 *     Replace all ellipses with full slices and fill incomplete indices with
 */

static PyObject *_unellipsify(PyObject *__pyx_v_index, int __pyx_v_ndim) {
  PyObject *__pyx_v_tup = NULL;
  PyObject *__pyx_v_result = NULL;
  int __pyx_v_have_slices;
  int __pyx_v_seen_ellipsis;
  CYTHON_UNUSED PyObject *__pyx_v_idx = NULL;
  PyObject *__pyx_v_item = NULL;
  Py_ssize_t __pyx_v_nslices;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  Py_ssize_t __pyx_t_5;
  PyObject *(*__pyx_t_6)(PyObject *);
  PyObject *__pyx_t_7 = NULL;
  Py_ssize_t __pyx_t_8;
  int __pyx_t_9;
  int __pyx_t_10;
  PyObject *__pyx_t_11 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("_unellipsify", 0);

  /* "View.MemoryView":673
 *     full slices.
 *     """
 *     if not isinstance(index, tuple):             # <<<<<<<<<<<<<<
 *         tup = (index,)
 *     else:
 */
  __pyx_t_1 = PyTuple_Check(__pyx_v_index); 
  __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":674
 *     """
 *     if not isinstance(index, tuple):
 *         tup = (index,)             # <<<<<<<<<<<<<<
 *     else:
 *         tup = index
 */
    __pyx_t_3 = PyTuple_New(1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 674, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_index);
    __Pyx_GIVEREF(__pyx_v_index);
    PyTuple_SET_ITEM(__pyx_t_3, 0, __pyx_v_index);
    __pyx_v_tup = __pyx_t_3;
    __pyx_t_3 = 0;

    /* "View.MemoryView":673
 *     full slices.
 *     """
 *     if not isinstance(index, tuple):             # <<<<<<<<<<<<<<
 *         tup = (index,)
 *     else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":676
 *         tup = (index,)
 *     else:
 *         tup = index             # <<<<<<<<<<<<<<
 * 
 *     result = []
 */
  /*else*/ {
    __Pyx_INCREF(__pyx_v_index);
    __pyx_v_tup = __pyx_v_index;
  }
  __pyx_L3:;

  /* "View.MemoryView":678
 *         tup = index
 * 
 *     result = []             # <<<<<<<<<<<<<<
 *     have_slices = False
 *     seen_ellipsis = False
 */
  __pyx_t_3 = PyList_New(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 678, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_v_result = ((PyObject*)__pyx_t_3);
  __pyx_t_3 = 0;

  /* "View.MemoryView":679
 * 
 *     result = []
 *     have_slices = False             # <<<<<<<<<<<<<<
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):
 */
  __pyx_v_have_slices = 0;

  /* "View.MemoryView":680
 *     result = []
 *     have_slices = False
 *     seen_ellipsis = False             # <<<<<<<<<<<<<<
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:
 */
  __pyx_v_seen_ellipsis = 0;

  /* "View.MemoryView":681
 *     have_slices = False
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):             # <<<<<<<<<<<<<<
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 */
  __Pyx_INCREF(__pyx_int_0);
  __pyx_t_3 = __pyx_int_0;
  if (likely(PyList_CheckExact(__pyx_v_tup)) || PyTuple_CheckExact(__pyx_v_tup)) {
    __pyx_t_4 = __pyx_v_tup; __Pyx_INCREF(__pyx_t_4); __pyx_t_5 = 0;
    __pyx_t_6 = NULL;
  } else {
    __pyx_t_5 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_v_tup); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 681, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_6 = Py_TYPE(__pyx_t_4)->tp_iternext; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 681, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_6)) {
      if (likely(PyList_CheckExact(__pyx_t_4))) {
        if (__pyx_t_5 >= PyList_GET_SIZE(__pyx_t_4)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_7 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_7); __pyx_t_5++; if (unlikely(0 < 0)) __PYX_ERR(0, 681, __pyx_L1_error)
        #else
        __pyx_t_7 = PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 681, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        #endif
      } else {
        if (__pyx_t_5 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_7 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_7); __pyx_t_5++; if (unlikely(0 < 0)) __PYX_ERR(0, 681, __pyx_L1_error)
        #else
        __pyx_t_7 = PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 681, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        #endif
      }
    } else {
      __pyx_t_7 = __pyx_t_6(__pyx_t_4);
      if (unlikely(!__pyx_t_7)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(0, 681, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_7);
    }
    __Pyx_XDECREF_SET(__pyx_v_item, __pyx_t_7);
    __pyx_t_7 = 0;
    __Pyx_INCREF(__pyx_t_3);
    __Pyx_XDECREF_SET(__pyx_v_idx, __pyx_t_3);
    __pyx_t_7 = __Pyx_PyInt_AddObjC(__pyx_t_3, __pyx_int_1, 1, 0, 0); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 681, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_3);
    __pyx_t_3 = __pyx_t_7;
    __pyx_t_7 = 0;

    /* "View.MemoryView":682
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:             # <<<<<<<<<<<<<<
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 */
    __pyx_t_2 = (__pyx_v_item == __pyx_builtin_Ellipsis);
    __pyx_t_1 = (__pyx_t_2 != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":683
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:
 *             if not seen_ellipsis:             # <<<<<<<<<<<<<<
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 *                 seen_ellipsis = True
 */
      __pyx_t_1 = ((!(__pyx_v_seen_ellipsis != 0)) != 0);
      if (__pyx_t_1) {

        /* "View.MemoryView":684
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))             # <<<<<<<<<<<<<<
 *                 seen_ellipsis = True
 *             else:
 */
        __pyx_t_8 = PyObject_Length(__pyx_v_tup); if (unlikely(__pyx_t_8 == ((Py_ssize_t)-1))) __PYX_ERR(0, 684, __pyx_L1_error)
        __pyx_t_7 = PyList_New(1 * ((((__pyx_v_ndim - __pyx_t_8) + 1)<0) ? 0:((__pyx_v_ndim - __pyx_t_8) + 1))); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 684, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        { Py_ssize_t __pyx_temp;
          for (__pyx_temp=0; __pyx_temp < ((__pyx_v_ndim - __pyx_t_8) + 1); __pyx_temp++) {
            __Pyx_INCREF(__pyx_slice__32);
            __Pyx_GIVEREF(__pyx_slice__32);
            PyList_SET_ITEM(__pyx_t_7, __pyx_temp, __pyx_slice__32);
          }
        }
        __pyx_t_9 = __Pyx_PyList_Extend(__pyx_v_result, __pyx_t_7); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 684, __pyx_L1_error)
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;

        /* "View.MemoryView":685
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 *                 seen_ellipsis = True             # <<<<<<<<<<<<<<
 *             else:
 *                 result.append(slice(None))
 */
        __pyx_v_seen_ellipsis = 1;

        /* "View.MemoryView":683
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:
 *             if not seen_ellipsis:             # <<<<<<<<<<<<<<
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 *                 seen_ellipsis = True
 */
        goto __pyx_L7;
      }

      /* "View.MemoryView":687
 *                 seen_ellipsis = True
 *             else:
 *                 result.append(slice(None))             # <<<<<<<<<<<<<<
 *             have_slices = True
 *         else:
 */
      /*else*/ {
        __pyx_t_9 = __Pyx_PyList_Append(__pyx_v_result, __pyx_slice__32); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 687, __pyx_L1_error)
      }
      __pyx_L7:;

      /* "View.MemoryView":688
 *             else:
 *                 result.append(slice(None))
 *             have_slices = True             # <<<<<<<<<<<<<<
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):
 */
      __pyx_v_have_slices = 1;

      /* "View.MemoryView":682
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):
 *         if item is Ellipsis:             # <<<<<<<<<<<<<<
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))
 */
      goto __pyx_L6;
    }

    /* "View.MemoryView":690
 *             have_slices = True
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):             # <<<<<<<<<<<<<<
 *                 raise TypeError("Cannot index with type '%s'" % type(item))
 * 
 */
    /*else*/ {
      __pyx_t_2 = PySlice_Check(__pyx_v_item); 
      __pyx_t_10 = ((!(__pyx_t_2 != 0)) != 0);
      if (__pyx_t_10) {
      } else {
        __pyx_t_1 = __pyx_t_10;
        goto __pyx_L9_bool_binop_done;
      }
      __pyx_t_10 = ((!(PyIndex_Check(__pyx_v_item) != 0)) != 0);
      __pyx_t_1 = __pyx_t_10;
      __pyx_L9_bool_binop_done:;
      if (unlikely(__pyx_t_1)) {

        /* "View.MemoryView":691
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):
 *                 raise TypeError("Cannot index with type '%s'" % type(item))             # <<<<<<<<<<<<<<
 * 
 *             have_slices = have_slices or isinstance(item, slice)
 */
        __pyx_t_7 = __Pyx_PyString_FormatSafe(__pyx_kp_s_Cannot_index_with_type_s, ((PyObject *)Py_TYPE(__pyx_v_item))); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 691, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_7);
        __pyx_t_11 = __Pyx_PyObject_CallOneArg(__pyx_builtin_TypeError, __pyx_t_7); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 691, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_11);
        __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
        __Pyx_Raise(__pyx_t_11, 0, 0, 0);
        __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
        __PYX_ERR(0, 691, __pyx_L1_error)

        /* "View.MemoryView":690
 *             have_slices = True
 *         else:
 *             if not isinstance(item, slice) and not PyIndex_Check(item):             # <<<<<<<<<<<<<<
 *                 raise TypeError("Cannot index with type '%s'" % type(item))
 * 
 */
      }

      /* "View.MemoryView":693
 *                 raise TypeError("Cannot index with type '%s'" % type(item))
 * 
 *             have_slices = have_slices or isinstance(item, slice)             # <<<<<<<<<<<<<<
 *             result.append(item)
 * 
 */
      __pyx_t_10 = (__pyx_v_have_slices != 0);
      if (!__pyx_t_10) {
      } else {
        __pyx_t_1 = __pyx_t_10;
        goto __pyx_L11_bool_binop_done;
      }
      __pyx_t_10 = PySlice_Check(__pyx_v_item); 
      __pyx_t_2 = (__pyx_t_10 != 0);
      __pyx_t_1 = __pyx_t_2;
      __pyx_L11_bool_binop_done:;
      __pyx_v_have_slices = __pyx_t_1;

      /* "View.MemoryView":694
 * 
 *             have_slices = have_slices or isinstance(item, slice)
 *             result.append(item)             # <<<<<<<<<<<<<<
 * 
 *     nslices = ndim - len(result)
 */
      __pyx_t_9 = __Pyx_PyList_Append(__pyx_v_result, __pyx_v_item); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 694, __pyx_L1_error)
    }
    __pyx_L6:;

    /* "View.MemoryView":681
 *     have_slices = False
 *     seen_ellipsis = False
 *     for idx, item in enumerate(tup):             # <<<<<<<<<<<<<<
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 */
  }
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "View.MemoryView":696
 *             result.append(item)
 * 
 *     nslices = ndim - len(result)             # <<<<<<<<<<<<<<
 *     if nslices:
 *         result.extend([slice(None)] * nslices)
 */
  __pyx_t_5 = PyList_GET_SIZE(__pyx_v_result); if (unlikely(__pyx_t_5 == ((Py_ssize_t)-1))) __PYX_ERR(0, 696, __pyx_L1_error)
  __pyx_v_nslices = (__pyx_v_ndim - __pyx_t_5);

  /* "View.MemoryView":697
 * 
 *     nslices = ndim - len(result)
 *     if nslices:             # <<<<<<<<<<<<<<
 *         result.extend([slice(None)] * nslices)
 * 
 */
  __pyx_t_1 = (__pyx_v_nslices != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":698
 *     nslices = ndim - len(result)
 *     if nslices:
 *         result.extend([slice(None)] * nslices)             # <<<<<<<<<<<<<<
 * 
 *     return have_slices or nslices, tuple(result)
 */
    __pyx_t_3 = PyList_New(1 * ((__pyx_v_nslices<0) ? 0:__pyx_v_nslices)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 698, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    { Py_ssize_t __pyx_temp;
      for (__pyx_temp=0; __pyx_temp < __pyx_v_nslices; __pyx_temp++) {
        __Pyx_INCREF(__pyx_slice__32);
        __Pyx_GIVEREF(__pyx_slice__32);
        PyList_SET_ITEM(__pyx_t_3, __pyx_temp, __pyx_slice__32);
      }
    }
    __pyx_t_9 = __Pyx_PyList_Extend(__pyx_v_result, __pyx_t_3); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 698, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

    /* "View.MemoryView":697
 * 
 *     nslices = ndim - len(result)
 *     if nslices:             # <<<<<<<<<<<<<<
 *         result.extend([slice(None)] * nslices)
 * 
 */
  }

  /* "View.MemoryView":700
 *         result.extend([slice(None)] * nslices)
 * 
 *     return have_slices or nslices, tuple(result)             # <<<<<<<<<<<<<<
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 */
  __Pyx_XDECREF(__pyx_r);
  if (!__pyx_v_have_slices) {
  } else {
    __pyx_t_4 = __Pyx_PyBool_FromLong(__pyx_v_have_slices); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 700, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __pyx_t_3 = __pyx_t_4;
    __pyx_t_4 = 0;
    goto __pyx_L14_bool_binop_done;
  }
  __pyx_t_4 = PyInt_FromSsize_t(__pyx_v_nslices); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 700, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_3 = __pyx_t_4;
  __pyx_t_4 = 0;
  __pyx_L14_bool_binop_done:;
  __pyx_t_4 = PyList_AsTuple(__pyx_v_result); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 700, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __pyx_t_11 = PyTuple_New(2); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 700, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_11);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_11, 0, __pyx_t_3);
  __Pyx_GIVEREF(__pyx_t_4);
  PyTuple_SET_ITEM(__pyx_t_11, 1, __pyx_t_4);
  __pyx_t_3 = 0;
  __pyx_t_4 = 0;
  __pyx_r = ((PyObject*)__pyx_t_11);
  __pyx_t_11 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":668
 *     return isinstance(o, memoryview)
 * 
 * cdef tuple _unellipsify(object index, int ndim):             # <<<<<<<<<<<<<<
 *     """
 *     Replace all ellipses with full slices and fill incomplete indices with
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_11);
  __Pyx_AddTraceback("View.MemoryView._unellipsify", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v_tup);
  __Pyx_XDECREF(__pyx_v_result);
  __Pyx_XDECREF(__pyx_v_idx);
  __Pyx_XDECREF(__pyx_v_item);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":702
 *     return have_slices or nslices, tuple(result)
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):             # <<<<<<<<<<<<<<
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 */

static PyObject *assert_direct_dimensions(Py_ssize_t *__pyx_v_suboffsets, int __pyx_v_ndim) {
  Py_ssize_t __pyx_v_suboffset;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  Py_ssize_t *__pyx_t_1;
  Py_ssize_t *__pyx_t_2;
  Py_ssize_t *__pyx_t_3;
  int __pyx_t_4;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("assert_direct_dimensions", 0);

  /* "View.MemoryView":703
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 *     for suboffset in suboffsets[:ndim]:             # <<<<<<<<<<<<<<
 *         if suboffset >= 0:
 *             raise ValueError("Indirect dimensions not supported")
 */
  __pyx_t_2 = (__pyx_v_suboffsets + __pyx_v_ndim);
  for (__pyx_t_3 = __pyx_v_suboffsets; __pyx_t_3 < __pyx_t_2; __pyx_t_3++) {
    __pyx_t_1 = __pyx_t_3;
    __pyx_v_suboffset = (__pyx_t_1[0]);

    /* "View.MemoryView":704
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("Indirect dimensions not supported")
 * 
 */
    __pyx_t_4 = ((__pyx_v_suboffset >= 0) != 0);
    if (unlikely(__pyx_t_4)) {

      /* "View.MemoryView":705
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 *             raise ValueError("Indirect dimensions not supported")             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_t_5 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__33, NULL); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 705, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_5);
      __Pyx_Raise(__pyx_t_5, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
      __PYX_ERR(0, 705, __pyx_L1_error)

      /* "View.MemoryView":704
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             raise ValueError("Indirect dimensions not supported")
 * 
 */
    }
  }

  /* "View.MemoryView":702
 *     return have_slices or nslices, tuple(result)
 * 
 * cdef assert_direct_dimensions(Py_ssize_t *suboffsets, int ndim):             # <<<<<<<<<<<<<<
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.assert_direct_dimensions", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":712
 * 
 * @cname('__pyx_memview_slice')
 * cdef memoryview memview_slice(memoryview memview, object indices):             # <<<<<<<<<<<<<<
 *     cdef int new_ndim = 0, suboffset_dim = -1, dim
 *     cdef bint negative_step
 */

static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_obj *__pyx_v_memview, PyObject *__pyx_v_indices) {
  int __pyx_v_new_ndim;
  int __pyx_v_suboffset_dim;
  int __pyx_v_dim;
  __Pyx_memviewslice __pyx_v_src;
  __Pyx_memviewslice __pyx_v_dst;
  __Pyx_memviewslice *__pyx_v_p_src;
  struct __pyx_memoryviewslice_obj *__pyx_v_memviewsliceobj = 0;
  __Pyx_memviewslice *__pyx_v_p_dst;
  int *__pyx_v_p_suboffset_dim;
  Py_ssize_t __pyx_v_start;
  Py_ssize_t __pyx_v_stop;
  Py_ssize_t __pyx_v_step;
  int __pyx_v_have_start;
  int __pyx_v_have_stop;
  int __pyx_v_have_step;
  PyObject *__pyx_v_index = NULL;
  struct __pyx_memoryview_obj *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  struct __pyx_memoryview_obj *__pyx_t_4;
  char *__pyx_t_5;
  int __pyx_t_6;
  Py_ssize_t __pyx_t_7;
  PyObject *(*__pyx_t_8)(PyObject *);
  PyObject *__pyx_t_9 = NULL;
  Py_ssize_t __pyx_t_10;
  int __pyx_t_11;
  Py_ssize_t __pyx_t_12;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memview_slice", 0);

  /* "View.MemoryView":713
 * @cname('__pyx_memview_slice')
 * cdef memoryview memview_slice(memoryview memview, object indices):
 *     cdef int new_ndim = 0, suboffset_dim = -1, dim             # <<<<<<<<<<<<<<
 *     cdef bint negative_step
 *     cdef __Pyx_memviewslice src, dst
 */
  __pyx_v_new_ndim = 0;
  __pyx_v_suboffset_dim = -1;

  /* "View.MemoryView":720
 * 
 * 
 *     memset(&dst, 0, sizeof(dst))             # <<<<<<<<<<<<<<
 * 
 *     cdef _memoryviewslice memviewsliceobj
 */
  (void)(memset((&__pyx_v_dst), 0, (sizeof(__pyx_v_dst))));

  /* "View.MemoryView":724
 *     cdef _memoryviewslice memviewsliceobj
 * 
 *     assert memview.view.ndim > 0             # <<<<<<<<<<<<<<
 * 
 *     if isinstance(memview, _memoryviewslice):
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    if (unlikely(!((__pyx_v_memview->view.ndim > 0) != 0))) {
      PyErr_SetNone(PyExc_AssertionError);
      __PYX_ERR(0, 724, __pyx_L1_error)
    }
  }
  #endif

  /* "View.MemoryView":726
 *     assert memview.view.ndim > 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         memviewsliceobj = memview
 *         p_src = &memviewsliceobj.from_slice
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":727
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         memviewsliceobj = memview             # <<<<<<<<<<<<<<
 *         p_src = &memviewsliceobj.from_slice
 *     else:
 */
    if (!(likely(((((PyObject *)__pyx_v_memview)) == Py_None) || likely(__Pyx_TypeTest(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type))))) __PYX_ERR(0, 727, __pyx_L1_error)
    __pyx_t_3 = ((PyObject *)__pyx_v_memview);
    __Pyx_INCREF(__pyx_t_3);
    __pyx_v_memviewsliceobj = ((struct __pyx_memoryviewslice_obj *)__pyx_t_3);
    __pyx_t_3 = 0;

    /* "View.MemoryView":728
 *     if isinstance(memview, _memoryviewslice):
 *         memviewsliceobj = memview
 *         p_src = &memviewsliceobj.from_slice             # <<<<<<<<<<<<<<
 *     else:
 *         slice_copy(memview, &src)
 */
    __pyx_v_p_src = (&__pyx_v_memviewsliceobj->from_slice);

    /* "View.MemoryView":726
 *     assert memview.view.ndim > 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         memviewsliceobj = memview
 *         p_src = &memviewsliceobj.from_slice
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":730
 *         p_src = &memviewsliceobj.from_slice
 *     else:
 *         slice_copy(memview, &src)             # <<<<<<<<<<<<<<
 *         p_src = &src
 * 
 */
  /*else*/ {
    __pyx_memoryview_slice_copy(__pyx_v_memview, (&__pyx_v_src));

    /* "View.MemoryView":731
 *     else:
 *         slice_copy(memview, &src)
 *         p_src = &src             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_v_p_src = (&__pyx_v_src);
  }
  __pyx_L3:;

  /* "View.MemoryView":737
 * 
 * 
 *     dst.memview = p_src.memview             # <<<<<<<<<<<<<<
 *     dst.data = p_src.data
 * 
 */
  __pyx_t_4 = __pyx_v_p_src->memview;
  __pyx_v_dst.memview = __pyx_t_4;

  /* "View.MemoryView":738
 * 
 *     dst.memview = p_src.memview
 *     dst.data = p_src.data             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_5 = __pyx_v_p_src->data;
  __pyx_v_dst.data = __pyx_t_5;

  /* "View.MemoryView":743
 * 
 * 
 *     cdef __Pyx_memviewslice *p_dst = &dst             # <<<<<<<<<<<<<<
 *     cdef int *p_suboffset_dim = &suboffset_dim
 *     cdef Py_ssize_t start, stop, step
 */
  __pyx_v_p_dst = (&__pyx_v_dst);

  /* "View.MemoryView":744
 * 
 *     cdef __Pyx_memviewslice *p_dst = &dst
 *     cdef int *p_suboffset_dim = &suboffset_dim             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t start, stop, step
 *     cdef bint have_start, have_stop, have_step
 */
  __pyx_v_p_suboffset_dim = (&__pyx_v_suboffset_dim);

  /* "View.MemoryView":748
 *     cdef bint have_start, have_stop, have_step
 * 
 *     for dim, index in enumerate(indices):             # <<<<<<<<<<<<<<
 *         if PyIndex_Check(index):
 *             slice_memviewslice(
 */
  __pyx_t_6 = 0;
  if (likely(PyList_CheckExact(__pyx_v_indices)) || PyTuple_CheckExact(__pyx_v_indices)) {
    __pyx_t_3 = __pyx_v_indices; __Pyx_INCREF(__pyx_t_3); __pyx_t_7 = 0;
    __pyx_t_8 = NULL;
  } else {
    __pyx_t_7 = -1; __pyx_t_3 = PyObject_GetIter(__pyx_v_indices); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 748, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_8 = Py_TYPE(__pyx_t_3)->tp_iternext; if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 748, __pyx_L1_error)
  }
  for (;;) {
    if (likely(!__pyx_t_8)) {
      if (likely(PyList_CheckExact(__pyx_t_3))) {
        if (__pyx_t_7 >= PyList_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_9 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_7); __Pyx_INCREF(__pyx_t_9); __pyx_t_7++; if (unlikely(0 < 0)) __PYX_ERR(0, 748, __pyx_L1_error)
        #else
        __pyx_t_9 = PySequence_ITEM(__pyx_t_3, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 748, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_9);
        #endif
      } else {
        if (__pyx_t_7 >= PyTuple_GET_SIZE(__pyx_t_3)) break;
        #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
        __pyx_t_9 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_7); __Pyx_INCREF(__pyx_t_9); __pyx_t_7++; if (unlikely(0 < 0)) __PYX_ERR(0, 748, __pyx_L1_error)
        #else
        __pyx_t_9 = PySequence_ITEM(__pyx_t_3, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 748, __pyx_L1_error)
        __Pyx_GOTREF(__pyx_t_9);
        #endif
      }
    } else {
      __pyx_t_9 = __pyx_t_8(__pyx_t_3);
      if (unlikely(!__pyx_t_9)) {
        PyObject* exc_type = PyErr_Occurred();
        if (exc_type) {
          if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
          else __PYX_ERR(0, 748, __pyx_L1_error)
        }
        break;
      }
      __Pyx_GOTREF(__pyx_t_9);
    }
    __Pyx_XDECREF_SET(__pyx_v_index, __pyx_t_9);
    __pyx_t_9 = 0;
    __pyx_v_dim = __pyx_t_6;
    __pyx_t_6 = (__pyx_t_6 + 1);

    /* "View.MemoryView":749
 * 
 *     for dim, index in enumerate(indices):
 *         if PyIndex_Check(index):             # <<<<<<<<<<<<<<
 *             slice_memviewslice(
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 */
    __pyx_t_2 = (PyIndex_Check(__pyx_v_index) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":753
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 *                 dim, new_ndim, p_suboffset_dim,
 *                 index, 0, 0, # start, stop, step             # <<<<<<<<<<<<<<
 *                 0, 0, 0, # have_{start,stop,step}
 *                 False)
 */
      __pyx_t_10 = __Pyx_PyIndex_AsSsize_t(__pyx_v_index); if (unlikely((__pyx_t_10 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 753, __pyx_L1_error)

      /* "View.MemoryView":750
 *     for dim, index in enumerate(indices):
 *         if PyIndex_Check(index):
 *             slice_memviewslice(             # <<<<<<<<<<<<<<
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 *                 dim, new_ndim, p_suboffset_dim,
 */
      __pyx_t_11 = __pyx_memoryview_slice_memviewslice(__pyx_v_p_dst, (__pyx_v_p_src->shape[__pyx_v_dim]), (__pyx_v_p_src->strides[__pyx_v_dim]), (__pyx_v_p_src->suboffsets[__pyx_v_dim]), __pyx_v_dim, __pyx_v_new_ndim, __pyx_v_p_suboffset_dim, __pyx_t_10, 0, 0, 0, 0, 0, 0); if (unlikely(__pyx_t_11 == ((int)-1))) __PYX_ERR(0, 750, __pyx_L1_error)

      /* "View.MemoryView":749
 * 
 *     for dim, index in enumerate(indices):
 *         if PyIndex_Check(index):             # <<<<<<<<<<<<<<
 *             slice_memviewslice(
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 */
      goto __pyx_L6;
    }

    /* "View.MemoryView":756
 *                 0, 0, 0, # have_{start,stop,step}
 *                 False)
 *         elif index is None:             # <<<<<<<<<<<<<<
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0
 */
    __pyx_t_2 = (__pyx_v_index == Py_None);
    __pyx_t_1 = (__pyx_t_2 != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":757
 *                 False)
 *         elif index is None:
 *             p_dst.shape[new_ndim] = 1             # <<<<<<<<<<<<<<
 *             p_dst.strides[new_ndim] = 0
 *             p_dst.suboffsets[new_ndim] = -1
 */
      (__pyx_v_p_dst->shape[__pyx_v_new_ndim]) = 1;

      /* "View.MemoryView":758
 *         elif index is None:
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0             # <<<<<<<<<<<<<<
 *             p_dst.suboffsets[new_ndim] = -1
 *             new_ndim += 1
 */
      (__pyx_v_p_dst->strides[__pyx_v_new_ndim]) = 0;

      /* "View.MemoryView":759
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0
 *             p_dst.suboffsets[new_ndim] = -1             # <<<<<<<<<<<<<<
 *             new_ndim += 1
 *         else:
 */
      (__pyx_v_p_dst->suboffsets[__pyx_v_new_ndim]) = -1L;

      /* "View.MemoryView":760
 *             p_dst.strides[new_ndim] = 0
 *             p_dst.suboffsets[new_ndim] = -1
 *             new_ndim += 1             # <<<<<<<<<<<<<<
 *         else:
 *             start = index.start or 0
 */
      __pyx_v_new_ndim = (__pyx_v_new_ndim + 1);

      /* "View.MemoryView":756
 *                 0, 0, 0, # have_{start,stop,step}
 *                 False)
 *         elif index is None:             # <<<<<<<<<<<<<<
 *             p_dst.shape[new_ndim] = 1
 *             p_dst.strides[new_ndim] = 0
 */
      goto __pyx_L6;
    }

    /* "View.MemoryView":762
 *             new_ndim += 1
 *         else:
 *             start = index.start or 0             # <<<<<<<<<<<<<<
 *             stop = index.stop or 0
 *             step = index.step or 0
 */
    /*else*/ {
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_start); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 762, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(0, 762, __pyx_L1_error)
      if (!__pyx_t_1) {
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else {
        __pyx_t_12 = __Pyx_PyIndex_AsSsize_t(__pyx_t_9); if (unlikely((__pyx_t_12 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 762, __pyx_L1_error)
        __pyx_t_10 = __pyx_t_12;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        goto __pyx_L7_bool_binop_done;
      }
      __pyx_t_10 = 0;
      __pyx_L7_bool_binop_done:;
      __pyx_v_start = __pyx_t_10;

      /* "View.MemoryView":763
 *         else:
 *             start = index.start or 0
 *             stop = index.stop or 0             # <<<<<<<<<<<<<<
 *             step = index.step or 0
 * 
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_stop); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 763, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(0, 763, __pyx_L1_error)
      if (!__pyx_t_1) {
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else {
        __pyx_t_12 = __Pyx_PyIndex_AsSsize_t(__pyx_t_9); if (unlikely((__pyx_t_12 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 763, __pyx_L1_error)
        __pyx_t_10 = __pyx_t_12;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        goto __pyx_L9_bool_binop_done;
      }
      __pyx_t_10 = 0;
      __pyx_L9_bool_binop_done:;
      __pyx_v_stop = __pyx_t_10;

      /* "View.MemoryView":764
 *             start = index.start or 0
 *             stop = index.stop or 0
 *             step = index.step or 0             # <<<<<<<<<<<<<<
 * 
 *             have_start = index.start is not None
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_step); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 764, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely(__pyx_t_1 < 0)) __PYX_ERR(0, 764, __pyx_L1_error)
      if (!__pyx_t_1) {
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      } else {
        __pyx_t_12 = __Pyx_PyIndex_AsSsize_t(__pyx_t_9); if (unlikely((__pyx_t_12 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 764, __pyx_L1_error)
        __pyx_t_10 = __pyx_t_12;
        __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
        goto __pyx_L11_bool_binop_done;
      }
      __pyx_t_10 = 0;
      __pyx_L11_bool_binop_done:;
      __pyx_v_step = __pyx_t_10;

      /* "View.MemoryView":766
 *             step = index.step or 0
 * 
 *             have_start = index.start is not None             # <<<<<<<<<<<<<<
 *             have_stop = index.stop is not None
 *             have_step = index.step is not None
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_start); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 766, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = (__pyx_t_9 != Py_None);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __pyx_v_have_start = __pyx_t_1;

      /* "View.MemoryView":767
 * 
 *             have_start = index.start is not None
 *             have_stop = index.stop is not None             # <<<<<<<<<<<<<<
 *             have_step = index.step is not None
 * 
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_stop); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 767, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = (__pyx_t_9 != Py_None);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __pyx_v_have_stop = __pyx_t_1;

      /* "View.MemoryView":768
 *             have_start = index.start is not None
 *             have_stop = index.stop is not None
 *             have_step = index.step is not None             # <<<<<<<<<<<<<<
 * 
 *             slice_memviewslice(
 */
      __pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_index, __pyx_n_s_step); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 768, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_9);
      __pyx_t_1 = (__pyx_t_9 != Py_None);
      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
      __pyx_v_have_step = __pyx_t_1;

      /* "View.MemoryView":770
 *             have_step = index.step is not None
 * 
 *             slice_memviewslice(             # <<<<<<<<<<<<<<
 *                 p_dst, p_src.shape[dim], p_src.strides[dim], p_src.suboffsets[dim],
 *                 dim, new_ndim, p_suboffset_dim,
 */
      __pyx_t_11 = __pyx_memoryview_slice_memviewslice(__pyx_v_p_dst, (__pyx_v_p_src->shape[__pyx_v_dim]), (__pyx_v_p_src->strides[__pyx_v_dim]), (__pyx_v_p_src->suboffsets[__pyx_v_dim]), __pyx_v_dim, __pyx_v_new_ndim, __pyx_v_p_suboffset_dim, __pyx_v_start, __pyx_v_stop, __pyx_v_step, __pyx_v_have_start, __pyx_v_have_stop, __pyx_v_have_step, 1); if (unlikely(__pyx_t_11 == ((int)-1))) __PYX_ERR(0, 770, __pyx_L1_error)

      /* "View.MemoryView":776
 *                 have_start, have_stop, have_step,
 *                 True)
 *             new_ndim += 1             # <<<<<<<<<<<<<<
 * 
 *     if isinstance(memview, _memoryviewslice):
 */
      __pyx_v_new_ndim = (__pyx_v_new_ndim + 1);
    }
    __pyx_L6:;

    /* "View.MemoryView":748
 *     cdef bint have_start, have_stop, have_step
 * 
 *     for dim, index in enumerate(indices):             # <<<<<<<<<<<<<<
 *         if PyIndex_Check(index):
 *             slice_memviewslice(
 */
  }
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;

  /* "View.MemoryView":778
 *             new_ndim += 1
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":779
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,
 */
    __Pyx_XDECREF(((PyObject *)__pyx_r));

    /* "View.MemoryView":780
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_dtype_func,
 *                                     memview.dtype_is_object)
 */
    if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); __PYX_ERR(0, 780, __pyx_L1_error) }

    /* "View.MemoryView":781
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 *     else:
 */
    if (unlikely(!__pyx_v_memviewsliceobj)) { __Pyx_RaiseUnboundLocalError("memviewsliceobj"); __PYX_ERR(0, 781, __pyx_L1_error) }

    /* "View.MemoryView":779
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         return memoryview_fromslice(dst, new_ndim,             # <<<<<<<<<<<<<<
 *                                     memviewsliceobj.to_object_func,
 *                                     memviewsliceobj.to_dtype_func,
 */
    __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, __pyx_v_memviewsliceobj->to_object_func, __pyx_v_memviewsliceobj->to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 779, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) __PYX_ERR(0, 779, __pyx_L1_error)
    __pyx_r = ((struct __pyx_memoryview_obj *)__pyx_t_3);
    __pyx_t_3 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":778
 *             new_ndim += 1
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         return memoryview_fromslice(dst, new_ndim,
 *                                     memviewsliceobj.to_object_func,
 */
  }

  /* "View.MemoryView":784
 *                                     memview.dtype_is_object)
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 * 
 */
  /*else*/ {
    __Pyx_XDECREF(((PyObject *)__pyx_r));

    /* "View.MemoryView":785
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,
 *                                     memview.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_t_3 = __pyx_memoryview_fromslice(__pyx_v_dst, __pyx_v_new_ndim, NULL, NULL, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 784, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);

    /* "View.MemoryView":784
 *                                     memview.dtype_is_object)
 *     else:
 *         return memoryview_fromslice(dst, new_ndim, NULL, NULL,             # <<<<<<<<<<<<<<
 *                                     memview.dtype_is_object)
 * 
 */
    if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_memoryview_type))))) __PYX_ERR(0, 784, __pyx_L1_error)
    __pyx_r = ((struct __pyx_memoryview_obj *)__pyx_t_3);
    __pyx_t_3 = 0;
    goto __pyx_L0;
  }

  /* "View.MemoryView":712
 * 
 * @cname('__pyx_memview_slice')
 * cdef memoryview memview_slice(memoryview memview, object indices):             # <<<<<<<<<<<<<<
 *     cdef int new_ndim = 0, suboffset_dim = -1, dim
 *     cdef bint negative_step
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_9);
  __Pyx_AddTraceback("View.MemoryView.memview_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_memviewsliceobj);
  __Pyx_XDECREF(__pyx_v_index);
  __Pyx_XGIVEREF((PyObject *)__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":809
 * 
 * @cname('__pyx_memoryview_slice_memviewslice')
 * cdef int slice_memviewslice(             # <<<<<<<<<<<<<<
 *         __Pyx_memviewslice *dst,
 *         Py_ssize_t shape, Py_ssize_t stride, Py_ssize_t suboffset,
 */

static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *__pyx_v_dst, Py_ssize_t __pyx_v_shape, Py_ssize_t __pyx_v_stride, Py_ssize_t __pyx_v_suboffset, int __pyx_v_dim, int __pyx_v_new_ndim, int *__pyx_v_suboffset_dim, Py_ssize_t __pyx_v_start, Py_ssize_t __pyx_v_stop, Py_ssize_t __pyx_v_step, int __pyx_v_have_start, int __pyx_v_have_stop, int __pyx_v_have_step, int __pyx_v_is_slice) {
  Py_ssize_t __pyx_v_new_shape;
  int __pyx_v_negative_step;
  int __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":829
 *     cdef bint negative_step
 * 
 *     if not is_slice:             # <<<<<<<<<<<<<<
 * 
 *         if start < 0:
 */
  __pyx_t_1 = ((!(__pyx_v_is_slice != 0)) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":831
 *     if not is_slice:
 * 
 *         if start < 0:             # <<<<<<<<<<<<<<
 *             start += shape
 *         if not 0 <= start < shape:
 */
    __pyx_t_1 = ((__pyx_v_start < 0) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":832
 * 
 *         if start < 0:
 *             start += shape             # <<<<<<<<<<<<<<
 *         if not 0 <= start < shape:
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 */
      __pyx_v_start = (__pyx_v_start + __pyx_v_shape);

      /* "View.MemoryView":831
 *     if not is_slice:
 * 
 *         if start < 0:             # <<<<<<<<<<<<<<
 *             start += shape
 *         if not 0 <= start < shape:
 */
    }

    /* "View.MemoryView":833
 *         if start < 0:
 *             start += shape
 *         if not 0 <= start < shape:             # <<<<<<<<<<<<<<
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 *     else:
 */
    __pyx_t_1 = (0 <= __pyx_v_start);
    if (__pyx_t_1) {
      __pyx_t_1 = (__pyx_v_start < __pyx_v_shape);
    }
    __pyx_t_2 = ((!(__pyx_t_1 != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":834
 *             start += shape
 *         if not 0 <= start < shape:
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)             # <<<<<<<<<<<<<<
 *     else:
 * 
 */
      __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, ((char *)"Index out of bounds (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(0, 834, __pyx_L1_error)

      /* "View.MemoryView":833
 *         if start < 0:
 *             start += shape
 *         if not 0 <= start < shape:             # <<<<<<<<<<<<<<
 *             _err_dim(IndexError, "Index out of bounds (axis %d)", dim)
 *     else:
 */
    }

    /* "View.MemoryView":829
 *     cdef bint negative_step
 * 
 *     if not is_slice:             # <<<<<<<<<<<<<<
 * 
 *         if start < 0:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":837
 *     else:
 * 
 *         negative_step = have_step != 0 and step < 0             # <<<<<<<<<<<<<<
 * 
 *         if have_step and step == 0:
 */
  /*else*/ {
    __pyx_t_1 = ((__pyx_v_have_step != 0) != 0);
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_1 = ((__pyx_v_step < 0) != 0);
    __pyx_t_2 = __pyx_t_1;
    __pyx_L6_bool_binop_done:;
    __pyx_v_negative_step = __pyx_t_2;

    /* "View.MemoryView":839
 *         negative_step = have_step != 0 and step < 0
 * 
 *         if have_step and step == 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)
 * 
 */
    __pyx_t_1 = (__pyx_v_have_step != 0);
    if (__pyx_t_1) {
    } else {
      __pyx_t_2 = __pyx_t_1;
      goto __pyx_L9_bool_binop_done;
    }
    __pyx_t_1 = ((__pyx_v_step == 0) != 0);
    __pyx_t_2 = __pyx_t_1;
    __pyx_L9_bool_binop_done:;
    if (__pyx_t_2) {

      /* "View.MemoryView":840
 * 
 *         if have_step and step == 0:
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, ((char *)"Step may not be zero (axis %d)"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(0, 840, __pyx_L1_error)

      /* "View.MemoryView":839
 *         negative_step = have_step != 0 and step < 0
 * 
 *         if have_step and step == 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Step may not be zero (axis %d)", dim)
 * 
 */
    }

    /* "View.MemoryView":843
 * 
 * 
 *         if have_start:             # <<<<<<<<<<<<<<
 *             if start < 0:
 *                 start += shape
 */
    __pyx_t_2 = (__pyx_v_have_start != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":844
 * 
 *         if have_start:
 *             if start < 0:             # <<<<<<<<<<<<<<
 *                 start += shape
 *                 if start < 0:
 */
      __pyx_t_2 = ((__pyx_v_start < 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":845
 *         if have_start:
 *             if start < 0:
 *                 start += shape             # <<<<<<<<<<<<<<
 *                 if start < 0:
 *                     start = 0
 */
        __pyx_v_start = (__pyx_v_start + __pyx_v_shape);

        /* "View.MemoryView":846
 *             if start < 0:
 *                 start += shape
 *                 if start < 0:             # <<<<<<<<<<<<<<
 *                     start = 0
 *             elif start >= shape:
 */
        __pyx_t_2 = ((__pyx_v_start < 0) != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":847
 *                 start += shape
 *                 if start < 0:
 *                     start = 0             # <<<<<<<<<<<<<<
 *             elif start >= shape:
 *                 if negative_step:
 */
          __pyx_v_start = 0;

          /* "View.MemoryView":846
 *             if start < 0:
 *                 start += shape
 *                 if start < 0:             # <<<<<<<<<<<<<<
 *                     start = 0
 *             elif start >= shape:
 */
        }

        /* "View.MemoryView":844
 * 
 *         if have_start:
 *             if start < 0:             # <<<<<<<<<<<<<<
 *                 start += shape
 *                 if start < 0:
 */
        goto __pyx_L12;
      }

      /* "View.MemoryView":848
 *                 if start < 0:
 *                     start = 0
 *             elif start >= shape:             # <<<<<<<<<<<<<<
 *                 if negative_step:
 *                     start = shape - 1
 */
      __pyx_t_2 = ((__pyx_v_start >= __pyx_v_shape) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":849
 *                     start = 0
 *             elif start >= shape:
 *                 if negative_step:             # <<<<<<<<<<<<<<
 *                     start = shape - 1
 *                 else:
 */
        __pyx_t_2 = (__pyx_v_negative_step != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":850
 *             elif start >= shape:
 *                 if negative_step:
 *                     start = shape - 1             # <<<<<<<<<<<<<<
 *                 else:
 *                     start = shape
 */
          __pyx_v_start = (__pyx_v_shape - 1);

          /* "View.MemoryView":849
 *                     start = 0
 *             elif start >= shape:
 *                 if negative_step:             # <<<<<<<<<<<<<<
 *                     start = shape - 1
 *                 else:
 */
          goto __pyx_L14;
        }

        /* "View.MemoryView":852
 *                     start = shape - 1
 *                 else:
 *                     start = shape             # <<<<<<<<<<<<<<
 *         else:
 *             if negative_step:
 */
        /*else*/ {
          __pyx_v_start = __pyx_v_shape;
        }
        __pyx_L14:;

        /* "View.MemoryView":848
 *                 if start < 0:
 *                     start = 0
 *             elif start >= shape:             # <<<<<<<<<<<<<<
 *                 if negative_step:
 *                     start = shape - 1
 */
      }
      __pyx_L12:;

      /* "View.MemoryView":843
 * 
 * 
 *         if have_start:             # <<<<<<<<<<<<<<
 *             if start < 0:
 *                 start += shape
 */
      goto __pyx_L11;
    }

    /* "View.MemoryView":854
 *                     start = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 start = shape - 1
 *             else:
 */
    /*else*/ {
      __pyx_t_2 = (__pyx_v_negative_step != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":855
 *         else:
 *             if negative_step:
 *                 start = shape - 1             # <<<<<<<<<<<<<<
 *             else:
 *                 start = 0
 */
        __pyx_v_start = (__pyx_v_shape - 1);

        /* "View.MemoryView":854
 *                     start = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 start = shape - 1
 *             else:
 */
        goto __pyx_L15;
      }

      /* "View.MemoryView":857
 *                 start = shape - 1
 *             else:
 *                 start = 0             # <<<<<<<<<<<<<<
 * 
 *         if have_stop:
 */
      /*else*/ {
        __pyx_v_start = 0;
      }
      __pyx_L15:;
    }
    __pyx_L11:;

    /* "View.MemoryView":859
 *                 start = 0
 * 
 *         if have_stop:             # <<<<<<<<<<<<<<
 *             if stop < 0:
 *                 stop += shape
 */
    __pyx_t_2 = (__pyx_v_have_stop != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":860
 * 
 *         if have_stop:
 *             if stop < 0:             # <<<<<<<<<<<<<<
 *                 stop += shape
 *                 if stop < 0:
 */
      __pyx_t_2 = ((__pyx_v_stop < 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":861
 *         if have_stop:
 *             if stop < 0:
 *                 stop += shape             # <<<<<<<<<<<<<<
 *                 if stop < 0:
 *                     stop = 0
 */
        __pyx_v_stop = (__pyx_v_stop + __pyx_v_shape);

        /* "View.MemoryView":862
 *             if stop < 0:
 *                 stop += shape
 *                 if stop < 0:             # <<<<<<<<<<<<<<
 *                     stop = 0
 *             elif stop > shape:
 */
        __pyx_t_2 = ((__pyx_v_stop < 0) != 0);
        if (__pyx_t_2) {

          /* "View.MemoryView":863
 *                 stop += shape
 *                 if stop < 0:
 *                     stop = 0             # <<<<<<<<<<<<<<
 *             elif stop > shape:
 *                 stop = shape
 */
          __pyx_v_stop = 0;

          /* "View.MemoryView":862
 *             if stop < 0:
 *                 stop += shape
 *                 if stop < 0:             # <<<<<<<<<<<<<<
 *                     stop = 0
 *             elif stop > shape:
 */
        }

        /* "View.MemoryView":860
 * 
 *         if have_stop:
 *             if stop < 0:             # <<<<<<<<<<<<<<
 *                 stop += shape
 *                 if stop < 0:
 */
        goto __pyx_L17;
      }

      /* "View.MemoryView":864
 *                 if stop < 0:
 *                     stop = 0
 *             elif stop > shape:             # <<<<<<<<<<<<<<
 *                 stop = shape
 *         else:
 */
      __pyx_t_2 = ((__pyx_v_stop > __pyx_v_shape) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":865
 *                     stop = 0
 *             elif stop > shape:
 *                 stop = shape             # <<<<<<<<<<<<<<
 *         else:
 *             if negative_step:
 */
        __pyx_v_stop = __pyx_v_shape;

        /* "View.MemoryView":864
 *                 if stop < 0:
 *                     stop = 0
 *             elif stop > shape:             # <<<<<<<<<<<<<<
 *                 stop = shape
 *         else:
 */
      }
      __pyx_L17:;

      /* "View.MemoryView":859
 *                 start = 0
 * 
 *         if have_stop:             # <<<<<<<<<<<<<<
 *             if stop < 0:
 *                 stop += shape
 */
      goto __pyx_L16;
    }

    /* "View.MemoryView":867
 *                 stop = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 stop = -1
 *             else:
 */
    /*else*/ {
      __pyx_t_2 = (__pyx_v_negative_step != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":868
 *         else:
 *             if negative_step:
 *                 stop = -1             # <<<<<<<<<<<<<<
 *             else:
 *                 stop = shape
 */
        __pyx_v_stop = -1L;

        /* "View.MemoryView":867
 *                 stop = shape
 *         else:
 *             if negative_step:             # <<<<<<<<<<<<<<
 *                 stop = -1
 *             else:
 */
        goto __pyx_L19;
      }

      /* "View.MemoryView":870
 *                 stop = -1
 *             else:
 *                 stop = shape             # <<<<<<<<<<<<<<
 * 
 *         if not have_step:
 */
      /*else*/ {
        __pyx_v_stop = __pyx_v_shape;
      }
      __pyx_L19:;
    }
    __pyx_L16:;

    /* "View.MemoryView":872
 *                 stop = shape
 * 
 *         if not have_step:             # <<<<<<<<<<<<<<
 *             step = 1
 * 
 */
    __pyx_t_2 = ((!(__pyx_v_have_step != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":873
 * 
 *         if not have_step:
 *             step = 1             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_step = 1;

      /* "View.MemoryView":872
 *                 stop = shape
 * 
 *         if not have_step:             # <<<<<<<<<<<<<<
 *             step = 1
 * 
 */
    }

    /* "View.MemoryView":877
 * 
 *         with cython.cdivision(True):
 *             new_shape = (stop - start) // step             # <<<<<<<<<<<<<<
 * 
 *             if (stop - start) - step * new_shape:
 */
    __pyx_v_new_shape = ((__pyx_v_stop - __pyx_v_start) / __pyx_v_step);

    /* "View.MemoryView":879
 *             new_shape = (stop - start) // step
 * 
 *             if (stop - start) - step * new_shape:             # <<<<<<<<<<<<<<
 *                 new_shape += 1
 * 
 */
    __pyx_t_2 = (((__pyx_v_stop - __pyx_v_start) - (__pyx_v_step * __pyx_v_new_shape)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":880
 * 
 *             if (stop - start) - step * new_shape:
 *                 new_shape += 1             # <<<<<<<<<<<<<<
 * 
 *         if new_shape < 0:
 */
      __pyx_v_new_shape = (__pyx_v_new_shape + 1);

      /* "View.MemoryView":879
 *             new_shape = (stop - start) // step
 * 
 *             if (stop - start) - step * new_shape:             # <<<<<<<<<<<<<<
 *                 new_shape += 1
 * 
 */
    }

    /* "View.MemoryView":882
 *                 new_shape += 1
 * 
 *         if new_shape < 0:             # <<<<<<<<<<<<<<
 *             new_shape = 0
 * 
 */
    __pyx_t_2 = ((__pyx_v_new_shape < 0) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":883
 * 
 *         if new_shape < 0:
 *             new_shape = 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_new_shape = 0;

      /* "View.MemoryView":882
 *                 new_shape += 1
 * 
 *         if new_shape < 0:             # <<<<<<<<<<<<<<
 *             new_shape = 0
 * 
 */
    }

    /* "View.MemoryView":886
 * 
 * 
 *         dst.strides[new_ndim] = stride * step             # <<<<<<<<<<<<<<
 *         dst.shape[new_ndim] = new_shape
 *         dst.suboffsets[new_ndim] = suboffset
 */
    (__pyx_v_dst->strides[__pyx_v_new_ndim]) = (__pyx_v_stride * __pyx_v_step);

    /* "View.MemoryView":887
 * 
 *         dst.strides[new_ndim] = stride * step
 *         dst.shape[new_ndim] = new_shape             # <<<<<<<<<<<<<<
 *         dst.suboffsets[new_ndim] = suboffset
 * 
 */
    (__pyx_v_dst->shape[__pyx_v_new_ndim]) = __pyx_v_new_shape;

    /* "View.MemoryView":888
 *         dst.strides[new_ndim] = stride * step
 *         dst.shape[new_ndim] = new_shape
 *         dst.suboffsets[new_ndim] = suboffset             # <<<<<<<<<<<<<<
 * 
 * 
 */
    (__pyx_v_dst->suboffsets[__pyx_v_new_ndim]) = __pyx_v_suboffset;
  }
  __pyx_L3:;

  /* "View.MemoryView":891
 * 
 * 
 *     if suboffset_dim[0] < 0:             # <<<<<<<<<<<<<<
 *         dst.data += start * stride
 *     else:
 */
  __pyx_t_2 = (((__pyx_v_suboffset_dim[0]) < 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":892
 * 
 *     if suboffset_dim[0] < 0:
 *         dst.data += start * stride             # <<<<<<<<<<<<<<
 *     else:
 *         dst.suboffsets[suboffset_dim[0]] += start * stride
 */
    __pyx_v_dst->data = (__pyx_v_dst->data + (__pyx_v_start * __pyx_v_stride));

    /* "View.MemoryView":891
 * 
 * 
 *     if suboffset_dim[0] < 0:             # <<<<<<<<<<<<<<
 *         dst.data += start * stride
 *     else:
 */
    goto __pyx_L23;
  }

  /* "View.MemoryView":894
 *         dst.data += start * stride
 *     else:
 *         dst.suboffsets[suboffset_dim[0]] += start * stride             # <<<<<<<<<<<<<<
 * 
 *     if suboffset >= 0:
 */
  /*else*/ {
    __pyx_t_3 = (__pyx_v_suboffset_dim[0]);
    (__pyx_v_dst->suboffsets[__pyx_t_3]) = ((__pyx_v_dst->suboffsets[__pyx_t_3]) + (__pyx_v_start * __pyx_v_stride));
  }
  __pyx_L23:;

  /* "View.MemoryView":896
 *         dst.suboffsets[suboffset_dim[0]] += start * stride
 * 
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         if not is_slice:
 *             if new_ndim == 0:
 */
  __pyx_t_2 = ((__pyx_v_suboffset >= 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":897
 * 
 *     if suboffset >= 0:
 *         if not is_slice:             # <<<<<<<<<<<<<<
 *             if new_ndim == 0:
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 */
    __pyx_t_2 = ((!(__pyx_v_is_slice != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":898
 *     if suboffset >= 0:
 *         if not is_slice:
 *             if new_ndim == 0:             # <<<<<<<<<<<<<<
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 *             else:
 */
      __pyx_t_2 = ((__pyx_v_new_ndim == 0) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":899
 *         if not is_slice:
 *             if new_ndim == 0:
 *                 dst.data = (<char **> dst.data)[0] + suboffset             # <<<<<<<<<<<<<<
 *             else:
 *                 _err_dim(IndexError, "All dimensions preceding dimension %d "
 */
        __pyx_v_dst->data = ((((char **)__pyx_v_dst->data)[0]) + __pyx_v_suboffset);

        /* "View.MemoryView":898
 *     if suboffset >= 0:
 *         if not is_slice:
 *             if new_ndim == 0:             # <<<<<<<<<<<<<<
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 *             else:
 */
        goto __pyx_L26;
      }

      /* "View.MemoryView":901
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 *             else:
 *                 _err_dim(IndexError, "All dimensions preceding dimension %d "             # <<<<<<<<<<<<<<
 *                                      "must be indexed and not sliced", dim)
 *         else:
 */
      /*else*/ {

        /* "View.MemoryView":902
 *             else:
 *                 _err_dim(IndexError, "All dimensions preceding dimension %d "
 *                                      "must be indexed and not sliced", dim)             # <<<<<<<<<<<<<<
 *         else:
 *             suboffset_dim[0] = new_ndim
 */
        __pyx_t_3 = __pyx_memoryview_err_dim(__pyx_builtin_IndexError, ((char *)"All dimensions preceding dimension %d must be indexed and not sliced"), __pyx_v_dim); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(0, 901, __pyx_L1_error)
      }
      __pyx_L26:;

      /* "View.MemoryView":897
 * 
 *     if suboffset >= 0:
 *         if not is_slice:             # <<<<<<<<<<<<<<
 *             if new_ndim == 0:
 *                 dst.data = (<char **> dst.data)[0] + suboffset
 */
      goto __pyx_L25;
    }

    /* "View.MemoryView":904
 *                                      "must be indexed and not sliced", dim)
 *         else:
 *             suboffset_dim[0] = new_ndim             # <<<<<<<<<<<<<<
 * 
 *     return 0
 */
    /*else*/ {
      (__pyx_v_suboffset_dim[0]) = __pyx_v_new_ndim;
    }
    __pyx_L25:;

    /* "View.MemoryView":896
 *         dst.suboffsets[suboffset_dim[0]] += start * stride
 * 
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         if not is_slice:
 *             if new_ndim == 0:
 */
  }

  /* "View.MemoryView":906
 *             suboffset_dim[0] = new_ndim
 * 
 *     return 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "View.MemoryView":809
 * 
 * @cname('__pyx_memoryview_slice_memviewslice')
 * cdef int slice_memviewslice(             # <<<<<<<<<<<<<<
 *         __Pyx_memviewslice *dst,
 *         Py_ssize_t shape, Py_ssize_t stride, Py_ssize_t suboffset,
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.slice_memviewslice", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = -1;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":912
 * 
 * @cname('__pyx_pybuffer_index')
 * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index,             # <<<<<<<<<<<<<<
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1
 */

static char *__pyx_pybuffer_index(Py_buffer *__pyx_v_view, char *__pyx_v_bufp, Py_ssize_t __pyx_v_index, Py_ssize_t __pyx_v_dim) {
  Py_ssize_t __pyx_v_shape;
  Py_ssize_t __pyx_v_stride;
  Py_ssize_t __pyx_v_suboffset;
  Py_ssize_t __pyx_v_itemsize;
  char *__pyx_v_resultp;
  char *__pyx_r;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("pybuffer_index", 0);

  /* "View.MemoryView":914
 * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index,
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t itemsize = view.itemsize
 *     cdef char *resultp
 */
  __pyx_v_suboffset = -1L;

  /* "View.MemoryView":915
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1
 *     cdef Py_ssize_t itemsize = view.itemsize             # <<<<<<<<<<<<<<
 *     cdef char *resultp
 * 
 */
  __pyx_t_1 = __pyx_v_view->itemsize;
  __pyx_v_itemsize = __pyx_t_1;

  /* "View.MemoryView":918
 *     cdef char *resultp
 * 
 *     if view.ndim == 0:             # <<<<<<<<<<<<<<
 *         shape = view.len / itemsize
 *         stride = itemsize
 */
  __pyx_t_2 = ((__pyx_v_view->ndim == 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":919
 * 
 *     if view.ndim == 0:
 *         shape = view.len / itemsize             # <<<<<<<<<<<<<<
 *         stride = itemsize
 *     else:
 */
    if (unlikely(__pyx_v_itemsize == 0)) {
      PyErr_SetString(PyExc_ZeroDivisionError, "integer division or modulo by zero");
      __PYX_ERR(0, 919, __pyx_L1_error)
    }
    else if (sizeof(Py_ssize_t) == sizeof(long) && (!(((Py_ssize_t)-1) > 0)) && unlikely(__pyx_v_itemsize == (Py_ssize_t)-1)  && unlikely(UNARY_NEG_WOULD_OVERFLOW(__pyx_v_view->len))) {
      PyErr_SetString(PyExc_OverflowError, "value too large to perform division");
      __PYX_ERR(0, 919, __pyx_L1_error)
    }
    __pyx_v_shape = __Pyx_div_Py_ssize_t(__pyx_v_view->len, __pyx_v_itemsize);

    /* "View.MemoryView":920
 *     if view.ndim == 0:
 *         shape = view.len / itemsize
 *         stride = itemsize             # <<<<<<<<<<<<<<
 *     else:
 *         shape = view.shape[dim]
 */
    __pyx_v_stride = __pyx_v_itemsize;

    /* "View.MemoryView":918
 *     cdef char *resultp
 * 
 *     if view.ndim == 0:             # <<<<<<<<<<<<<<
 *         shape = view.len / itemsize
 *         stride = itemsize
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":922
 *         stride = itemsize
 *     else:
 *         shape = view.shape[dim]             # <<<<<<<<<<<<<<
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:
 */
  /*else*/ {
    __pyx_v_shape = (__pyx_v_view->shape[__pyx_v_dim]);

    /* "View.MemoryView":923
 *     else:
 *         shape = view.shape[dim]
 *         stride = view.strides[dim]             # <<<<<<<<<<<<<<
 *         if view.suboffsets != NULL:
 *             suboffset = view.suboffsets[dim]
 */
    __pyx_v_stride = (__pyx_v_view->strides[__pyx_v_dim]);

    /* "View.MemoryView":924
 *         shape = view.shape[dim]
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *             suboffset = view.suboffsets[dim]
 * 
 */
    __pyx_t_2 = ((__pyx_v_view->suboffsets != NULL) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":925
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:
 *             suboffset = view.suboffsets[dim]             # <<<<<<<<<<<<<<
 * 
 *     if index < 0:
 */
      __pyx_v_suboffset = (__pyx_v_view->suboffsets[__pyx_v_dim]);

      /* "View.MemoryView":924
 *         shape = view.shape[dim]
 *         stride = view.strides[dim]
 *         if view.suboffsets != NULL:             # <<<<<<<<<<<<<<
 *             suboffset = view.suboffsets[dim]
 * 
 */
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":927
 *             suboffset = view.suboffsets[dim]
 * 
 *     if index < 0:             # <<<<<<<<<<<<<<
 *         index += view.shape[dim]
 *         if index < 0:
 */
  __pyx_t_2 = ((__pyx_v_index < 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":928
 * 
 *     if index < 0:
 *         index += view.shape[dim]             # <<<<<<<<<<<<<<
 *         if index < 0:
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 */
    __pyx_v_index = (__pyx_v_index + (__pyx_v_view->shape[__pyx_v_dim]));

    /* "View.MemoryView":929
 *     if index < 0:
 *         index += view.shape[dim]
 *         if index < 0:             # <<<<<<<<<<<<<<
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
    __pyx_t_2 = ((__pyx_v_index < 0) != 0);
    if (unlikely(__pyx_t_2)) {

      /* "View.MemoryView":930
 *         index += view.shape[dim]
 *         if index < 0:
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)             # <<<<<<<<<<<<<<
 * 
 *     if index >= shape:
 */
      __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 930, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_3);
      __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 930, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_4);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_builtin_IndexError, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 930, __pyx_L1_error)
      __Pyx_GOTREF(__pyx_t_3);
      __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
      __Pyx_Raise(__pyx_t_3, 0, 0, 0);
      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
      __PYX_ERR(0, 930, __pyx_L1_error)

      /* "View.MemoryView":929
 *     if index < 0:
 *         index += view.shape[dim]
 *         if index < 0:             # <<<<<<<<<<<<<<
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
    }

    /* "View.MemoryView":927
 *             suboffset = view.suboffsets[dim]
 * 
 *     if index < 0:             # <<<<<<<<<<<<<<
 *         index += view.shape[dim]
 *         if index < 0:
 */
  }

  /* "View.MemoryView":932
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 *     if index >= shape:             # <<<<<<<<<<<<<<
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
  __pyx_t_2 = ((__pyx_v_index >= __pyx_v_shape) != 0);
  if (unlikely(__pyx_t_2)) {

    /* "View.MemoryView":933
 * 
 *     if index >= shape:
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)             # <<<<<<<<<<<<<<
 * 
 *     resultp = bufp + index * stride
 */
    __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_dim); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 933, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __pyx_t_4 = __Pyx_PyString_Format(__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 933, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_t_3 = __Pyx_PyObject_CallOneArg(__pyx_builtin_IndexError, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 933, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_Raise(__pyx_t_3, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __PYX_ERR(0, 933, __pyx_L1_error)

    /* "View.MemoryView":932
 *             raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 *     if index >= shape:             # <<<<<<<<<<<<<<
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 */
  }

  /* "View.MemoryView":935
 *         raise IndexError("Out of bounds on buffer access (axis %d)" % dim)
 * 
 *     resultp = bufp + index * stride             # <<<<<<<<<<<<<<
 *     if suboffset >= 0:
 *         resultp = (<char **> resultp)[0] + suboffset
 */
  __pyx_v_resultp = (__pyx_v_bufp + (__pyx_v_index * __pyx_v_stride));

  /* "View.MemoryView":936
 * 
 *     resultp = bufp + index * stride
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         resultp = (<char **> resultp)[0] + suboffset
 * 
 */
  __pyx_t_2 = ((__pyx_v_suboffset >= 0) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":937
 *     resultp = bufp + index * stride
 *     if suboffset >= 0:
 *         resultp = (<char **> resultp)[0] + suboffset             # <<<<<<<<<<<<<<
 * 
 *     return resultp
 */
    __pyx_v_resultp = ((((char **)__pyx_v_resultp)[0]) + __pyx_v_suboffset);

    /* "View.MemoryView":936
 * 
 *     resultp = bufp + index * stride
 *     if suboffset >= 0:             # <<<<<<<<<<<<<<
 *         resultp = (<char **> resultp)[0] + suboffset
 * 
 */
  }

  /* "View.MemoryView":939
 *         resultp = (<char **> resultp)[0] + suboffset
 * 
 *     return resultp             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_resultp;
  goto __pyx_L0;

  /* "View.MemoryView":912
 * 
 * @cname('__pyx_pybuffer_index')
 * cdef char *pybuffer_index(Py_buffer *view, char *bufp, Py_ssize_t index,             # <<<<<<<<<<<<<<
 *                           Py_ssize_t dim) except NULL:
 *     cdef Py_ssize_t shape, stride, suboffset = -1
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("View.MemoryView.pybuffer_index", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":945
 * 
 * @cname('__pyx_memslice_transpose')
 * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0:             # <<<<<<<<<<<<<<
 *     cdef int ndim = memslice.memview.view.ndim
 * 
 */

static int __pyx_memslice_transpose(__Pyx_memviewslice *__pyx_v_memslice) {
  int __pyx_v_ndim;
  Py_ssize_t *__pyx_v_shape;
  Py_ssize_t *__pyx_v_strides;
  int __pyx_v_i;
  int __pyx_v_j;
  int __pyx_r;
  int __pyx_t_1;
  Py_ssize_t *__pyx_t_2;
  long __pyx_t_3;
  long __pyx_t_4;
  Py_ssize_t __pyx_t_5;
  Py_ssize_t __pyx_t_6;
  int __pyx_t_7;
  int __pyx_t_8;
  int __pyx_t_9;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":946
 * @cname('__pyx_memslice_transpose')
 * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0:
 *     cdef int ndim = memslice.memview.view.ndim             # <<<<<<<<<<<<<<
 * 
 *     cdef Py_ssize_t *shape = memslice.shape
 */
  __pyx_t_1 = __pyx_v_memslice->memview->view.ndim;
  __pyx_v_ndim = __pyx_t_1;

  /* "View.MemoryView":948
 *     cdef int ndim = memslice.memview.view.ndim
 * 
 *     cdef Py_ssize_t *shape = memslice.shape             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t *strides = memslice.strides
 * 
 */
  __pyx_t_2 = __pyx_v_memslice->shape;
  __pyx_v_shape = __pyx_t_2;

  /* "View.MemoryView":949
 * 
 *     cdef Py_ssize_t *shape = memslice.shape
 *     cdef Py_ssize_t *strides = memslice.strides             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = __pyx_v_memslice->strides;
  __pyx_v_strides = __pyx_t_2;

  /* "View.MemoryView":953
 * 
 *     cdef int i, j
 *     for i in range(ndim / 2):             # <<<<<<<<<<<<<<
 *         j = ndim - 1 - i
 *         strides[i], strides[j] = strides[j], strides[i]
 */
  __pyx_t_3 = __Pyx_div_long(__pyx_v_ndim, 2);
  __pyx_t_4 = __pyx_t_3;
  for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_4; __pyx_t_1+=1) {
    __pyx_v_i = __pyx_t_1;

    /* "View.MemoryView":954
 *     cdef int i, j
 *     for i in range(ndim / 2):
 *         j = ndim - 1 - i             # <<<<<<<<<<<<<<
 *         strides[i], strides[j] = strides[j], strides[i]
 *         shape[i], shape[j] = shape[j], shape[i]
 */
    __pyx_v_j = ((__pyx_v_ndim - 1) - __pyx_v_i);

    /* "View.MemoryView":955
 *     for i in range(ndim / 2):
 *         j = ndim - 1 - i
 *         strides[i], strides[j] = strides[j], strides[i]             # <<<<<<<<<<<<<<
 *         shape[i], shape[j] = shape[j], shape[i]
 * 
 */
    __pyx_t_5 = (__pyx_v_strides[__pyx_v_j]);
    __pyx_t_6 = (__pyx_v_strides[__pyx_v_i]);
    (__pyx_v_strides[__pyx_v_i]) = __pyx_t_5;
    (__pyx_v_strides[__pyx_v_j]) = __pyx_t_6;

    /* "View.MemoryView":956
 *         j = ndim - 1 - i
 *         strides[i], strides[j] = strides[j], strides[i]
 *         shape[i], shape[j] = shape[j], shape[i]             # <<<<<<<<<<<<<<
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:
 */
    __pyx_t_6 = (__pyx_v_shape[__pyx_v_j]);
    __pyx_t_5 = (__pyx_v_shape[__pyx_v_i]);
    (__pyx_v_shape[__pyx_v_i]) = __pyx_t_6;
    (__pyx_v_shape[__pyx_v_j]) = __pyx_t_5;

    /* "View.MemoryView":958
 *         shape[i], shape[j] = shape[j], shape[i]
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:             # <<<<<<<<<<<<<<
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")
 * 
 */
    __pyx_t_8 = (((__pyx_v_memslice->suboffsets[__pyx_v_i]) >= 0) != 0);
    if (!__pyx_t_8) {
    } else {
      __pyx_t_7 = __pyx_t_8;
      goto __pyx_L6_bool_binop_done;
    }
    __pyx_t_8 = (((__pyx_v_memslice->suboffsets[__pyx_v_j]) >= 0) != 0);
    __pyx_t_7 = __pyx_t_8;
    __pyx_L6_bool_binop_done:;
    if (__pyx_t_7) {

      /* "View.MemoryView":959
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")             # <<<<<<<<<<<<<<
 * 
 *     return 1
 */
      __pyx_t_9 = __pyx_memoryview_err(__pyx_builtin_ValueError, ((char *)"Cannot transpose memoryview with indirect dimensions")); if (unlikely(__pyx_t_9 == ((int)-1))) __PYX_ERR(0, 959, __pyx_L1_error)

      /* "View.MemoryView":958
 *         shape[i], shape[j] = shape[j], shape[i]
 * 
 *         if memslice.suboffsets[i] >= 0 or memslice.suboffsets[j] >= 0:             # <<<<<<<<<<<<<<
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")
 * 
 */
    }
  }

  /* "View.MemoryView":961
 *             _err(ValueError, "Cannot transpose memoryview with indirect dimensions")
 * 
 *     return 1             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = 1;
  goto __pyx_L0;

  /* "View.MemoryView":945
 * 
 * @cname('__pyx_memslice_transpose')
 * cdef int transpose_memslice(__Pyx_memviewslice *memslice) nogil except 0:             # <<<<<<<<<<<<<<
 *     cdef int ndim = memslice.memview.view.ndim
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.transpose_memslice", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = 0;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":978
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     def __dealloc__(self):             # <<<<<<<<<<<<<<
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 */

/* Python wrapper */
static void __pyx_memoryviewslice___dealloc__(PyObject *__pyx_v_self); /*proto*/
static void __pyx_memoryviewslice___dealloc__(PyObject *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0);
  __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(((struct __pyx_memoryviewslice_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__dealloc__", 0);

  /* "View.MemoryView":979
 * 
 *     def __dealloc__(self):
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)             # <<<<<<<<<<<<<<
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 */
  __PYX_XDEC_MEMVIEW((&__pyx_v_self->from_slice), 1);

  /* "View.MemoryView":978
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     def __dealloc__(self):             # <<<<<<<<<<<<<<
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":981
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         if self.to_object_func != NULL:
 *             return self.to_object_func(itemp)
 */

static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("convert_item_to_object", 0);

  /* "View.MemoryView":982
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 *         if self.to_object_func != NULL:             # <<<<<<<<<<<<<<
 *             return self.to_object_func(itemp)
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_self->to_object_func != NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":983
 *     cdef convert_item_to_object(self, char *itemp):
 *         if self.to_object_func != NULL:
 *             return self.to_object_func(itemp)             # <<<<<<<<<<<<<<
 *         else:
 *             return memoryview.convert_item_to_object(self, itemp)
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_2 = __pyx_v_self->to_object_func(__pyx_v_itemp); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 983, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_r = __pyx_t_2;
    __pyx_t_2 = 0;
    goto __pyx_L0;

    /* "View.MemoryView":982
 * 
 *     cdef convert_item_to_object(self, char *itemp):
 *         if self.to_object_func != NULL:             # <<<<<<<<<<<<<<
 *             return self.to_object_func(itemp)
 *         else:
 */
  }

  /* "View.MemoryView":985
 *             return self.to_object_func(itemp)
 *         else:
 *             return memoryview.convert_item_to_object(self, itemp)             # <<<<<<<<<<<<<<
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 */
  /*else*/ {
    __Pyx_XDECREF(__pyx_r);
    __pyx_t_2 = __pyx_memoryview_convert_item_to_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 985, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_r = __pyx_t_2;
    __pyx_t_2 = 0;
    goto __pyx_L0;
  }

  /* "View.MemoryView":981
 *         __PYX_XDEC_MEMVIEW(&self.from_slice, 1)
 * 
 *     cdef convert_item_to_object(self, char *itemp):             # <<<<<<<<<<<<<<
 *         if self.to_object_func != NULL:
 *             return self.to_object_func(itemp)
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_AddTraceback("View.MemoryView._memoryviewslice.convert_item_to_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":987
 *             return memoryview.convert_item_to_object(self, itemp)
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         if self.to_dtype_func != NULL:
 *             self.to_dtype_func(itemp, value)
 */

static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("assign_item_from_object", 0);

  /* "View.MemoryView":988
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 *         if self.to_dtype_func != NULL:             # <<<<<<<<<<<<<<
 *             self.to_dtype_func(itemp, value)
 *         else:
 */
  __pyx_t_1 = ((__pyx_v_self->to_dtype_func != NULL) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":989
 *     cdef assign_item_from_object(self, char *itemp, object value):
 *         if self.to_dtype_func != NULL:
 *             self.to_dtype_func(itemp, value)             # <<<<<<<<<<<<<<
 *         else:
 *             memoryview.assign_item_from_object(self, itemp, value)
 */
    __pyx_t_2 = __pyx_v_self->to_dtype_func(__pyx_v_itemp, __pyx_v_value); if (unlikely(__pyx_t_2 == ((int)0))) __PYX_ERR(0, 989, __pyx_L1_error)

    /* "View.MemoryView":988
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):
 *         if self.to_dtype_func != NULL:             # <<<<<<<<<<<<<<
 *             self.to_dtype_func(itemp, value)
 *         else:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":991
 *             self.to_dtype_func(itemp, value)
 *         else:
 *             memoryview.assign_item_from_object(self, itemp, value)             # <<<<<<<<<<<<<<
 * 
 *     @property
 */
  /*else*/ {
    __pyx_t_3 = __pyx_memoryview_assign_item_from_object(((struct __pyx_memoryview_obj *)__pyx_v_self), __pyx_v_itemp, __pyx_v_value); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 991, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  }
  __pyx_L3:;

  /* "View.MemoryView":987
 *             return memoryview.convert_item_to_object(self, itemp)
 * 
 *     cdef assign_item_from_object(self, char *itemp, object value):             # <<<<<<<<<<<<<<
 *         if self.to_dtype_func != NULL:
 *             self.to_dtype_func(itemp, value)
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView._memoryviewslice.assign_item_from_object", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":994
 * 
 *     @property
 *     def base(self):             # <<<<<<<<<<<<<<
 *         return self.from_object
 * 
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_16_memoryviewslice_4base_1__get__(PyObject *__pyx_v_self); /*proto*/
static PyObject *__pyx_pw_15View_dot_MemoryView_16_memoryviewslice_4base_1__get__(PyObject *__pyx_v_self) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__ (wrapper)", 0);
  __pyx_r = __pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(((struct __pyx_memoryviewslice_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__get__", 0);

  /* "View.MemoryView":995
 *     @property
 *     def base(self):
 *         return self.from_object             # <<<<<<<<<<<<<<
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v_self->from_object);
  __pyx_r = __pyx_v_self->from_object;
  goto __pyx_L0;

  /* "View.MemoryView":994
 * 
 *     @property
 *     def base(self):             # <<<<<<<<<<<<<<
 *         return self.from_object
 * 
 */

  /* function exit code */
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_memoryviewslice_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused); /*proto*/
static PyObject *__pyx_pw___pyx_memoryviewslice_1__reduce_cython__(PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *unused) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_memoryviewslice___reduce_cython__(((struct __pyx_memoryviewslice_obj *)__pyx_v_self));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_memoryviewslice___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__reduce_cython__", 0);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__34, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 2, __pyx_L1_error)

  /* "(tree fragment)":1
 * def __reduce_cython__(self):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView._memoryviewslice.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

/* Python wrapper */
static PyObject *__pyx_pw___pyx_memoryviewslice_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state); /*proto*/
static PyObject *__pyx_pw___pyx_memoryviewslice_3__setstate_cython__(PyObject *__pyx_v_self, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__setstate_cython__ (wrapper)", 0);
  __pyx_r = __pyx_pf___pyx_memoryviewslice_2__setstate_cython__(((struct __pyx_memoryviewslice_obj *)__pyx_v_self), ((PyObject *)__pyx_v___pyx_state));

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf___pyx_memoryviewslice_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__setstate_cython__", 0);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_t_1 = __Pyx_PyObject_Call(__pyx_builtin_TypeError, __pyx_tuple__35, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 4, __pyx_L1_error)

  /* "(tree fragment)":3
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):             # <<<<<<<<<<<<<<
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView._memoryviewslice.__setstate_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1001
 * 
 * @cname('__pyx_memoryview_fromslice')
 * cdef memoryview_fromslice(__Pyx_memviewslice memviewslice,             # <<<<<<<<<<<<<<
 *                           int ndim,
 *                           object (*to_object_func)(char *),
 */

static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice __pyx_v_memviewslice, int __pyx_v_ndim, PyObject *(*__pyx_v_to_object_func)(char *), int (*__pyx_v_to_dtype_func)(char *, PyObject *), int __pyx_v_dtype_is_object) {
  struct __pyx_memoryviewslice_obj *__pyx_v_result = 0;
  Py_ssize_t __pyx_v_suboffset;
  PyObject *__pyx_v_length = NULL;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  __Pyx_TypeInfo *__pyx_t_4;
  Py_buffer __pyx_t_5;
  Py_ssize_t *__pyx_t_6;
  Py_ssize_t *__pyx_t_7;
  Py_ssize_t *__pyx_t_8;
  Py_ssize_t __pyx_t_9;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_fromslice", 0);

  /* "View.MemoryView":1009
 *     cdef _memoryviewslice result
 * 
 *     if <PyObject *> memviewslice.memview == Py_None:             # <<<<<<<<<<<<<<
 *         return None
 * 
 */
  __pyx_t_1 = ((((PyObject *)__pyx_v_memviewslice.memview) == Py_None) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1010
 * 
 *     if <PyObject *> memviewslice.memview == Py_None:
 *         return None             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __Pyx_XDECREF(__pyx_r);
    __pyx_r = Py_None; __Pyx_INCREF(Py_None);
    goto __pyx_L0;

    /* "View.MemoryView":1009
 *     cdef _memoryviewslice result
 * 
 *     if <PyObject *> memviewslice.memview == Py_None:             # <<<<<<<<<<<<<<
 *         return None
 * 
 */
  }

  /* "View.MemoryView":1015
 * 
 * 
 *     result = _memoryviewslice(None, 0, dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 *     result.from_slice = memviewslice
 */
  __pyx_t_2 = __Pyx_PyBool_FromLong(__pyx_v_dtype_is_object); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1015, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyTuple_New(3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1015, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_INCREF(Py_None);
  __Pyx_GIVEREF(Py_None);
  PyTuple_SET_ITEM(__pyx_t_3, 0, Py_None);
  __Pyx_INCREF(__pyx_int_0);
  __Pyx_GIVEREF(__pyx_int_0);
  PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_int_0);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_3, 2, __pyx_t_2);
  __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_memoryviewslice_type), __pyx_t_3, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1015, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __pyx_v_result = ((struct __pyx_memoryviewslice_obj *)__pyx_t_2);
  __pyx_t_2 = 0;

  /* "View.MemoryView":1017
 *     result = _memoryviewslice(None, 0, dtype_is_object)
 * 
 *     result.from_slice = memviewslice             # <<<<<<<<<<<<<<
 *     __PYX_INC_MEMVIEW(&memviewslice, 1)
 * 
 */
  __pyx_v_result->from_slice = __pyx_v_memviewslice;

  /* "View.MemoryView":1018
 * 
 *     result.from_slice = memviewslice
 *     __PYX_INC_MEMVIEW(&memviewslice, 1)             # <<<<<<<<<<<<<<
 * 
 *     result.from_object = (<memoryview> memviewslice.memview).base
 */
  __PYX_INC_MEMVIEW((&__pyx_v_memviewslice), 1);

  /* "View.MemoryView":1020
 *     __PYX_INC_MEMVIEW(&memviewslice, 1)
 * 
 *     result.from_object = (<memoryview> memviewslice.memview).base             # <<<<<<<<<<<<<<
 *     result.typeinfo = memviewslice.memview.typeinfo
 * 
 */
  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v_memviewslice.memview), __pyx_n_s_base); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1020, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_2);
  __Pyx_GOTREF(__pyx_v_result->from_object);
  __Pyx_DECREF(__pyx_v_result->from_object);
  __pyx_v_result->from_object = __pyx_t_2;
  __pyx_t_2 = 0;

  /* "View.MemoryView":1021
 * 
 *     result.from_object = (<memoryview> memviewslice.memview).base
 *     result.typeinfo = memviewslice.memview.typeinfo             # <<<<<<<<<<<<<<
 * 
 *     result.view = memviewslice.memview.view
 */
  __pyx_t_4 = __pyx_v_memviewslice.memview->typeinfo;
  __pyx_v_result->__pyx_base.typeinfo = __pyx_t_4;

  /* "View.MemoryView":1023
 *     result.typeinfo = memviewslice.memview.typeinfo
 * 
 *     result.view = memviewslice.memview.view             # <<<<<<<<<<<<<<
 *     result.view.buf = <void *> memviewslice.data
 *     result.view.ndim = ndim
 */
  __pyx_t_5 = __pyx_v_memviewslice.memview->view;
  __pyx_v_result->__pyx_base.view = __pyx_t_5;

  /* "View.MemoryView":1024
 * 
 *     result.view = memviewslice.memview.view
 *     result.view.buf = <void *> memviewslice.data             # <<<<<<<<<<<<<<
 *     result.view.ndim = ndim
 *     (<__pyx_buffer *> &result.view).obj = Py_None
 */
  __pyx_v_result->__pyx_base.view.buf = ((void *)__pyx_v_memviewslice.data);

  /* "View.MemoryView":1025
 *     result.view = memviewslice.memview.view
 *     result.view.buf = <void *> memviewslice.data
 *     result.view.ndim = ndim             # <<<<<<<<<<<<<<
 *     (<__pyx_buffer *> &result.view).obj = Py_None
 *     Py_INCREF(Py_None)
 */
  __pyx_v_result->__pyx_base.view.ndim = __pyx_v_ndim;

  /* "View.MemoryView":1026
 *     result.view.buf = <void *> memviewslice.data
 *     result.view.ndim = ndim
 *     (<__pyx_buffer *> &result.view).obj = Py_None             # <<<<<<<<<<<<<<
 *     Py_INCREF(Py_None)
 * 
 */
  ((Py_buffer *)(&__pyx_v_result->__pyx_base.view))->obj = Py_None;

  /* "View.MemoryView":1027
 *     result.view.ndim = ndim
 *     (<__pyx_buffer *> &result.view).obj = Py_None
 *     Py_INCREF(Py_None)             # <<<<<<<<<<<<<<
 * 
 *     if (<memoryview>memviewslice.memview).flags & PyBUF_WRITABLE:
 */
  Py_INCREF(Py_None);

  /* "View.MemoryView":1029
 *     Py_INCREF(Py_None)
 * 
 *     if (<memoryview>memviewslice.memview).flags & PyBUF_WRITABLE:             # <<<<<<<<<<<<<<
 *         result.flags = PyBUF_RECORDS
 *     else:
 */
  __pyx_t_1 = ((((struct __pyx_memoryview_obj *)__pyx_v_memviewslice.memview)->flags & PyBUF_WRITABLE) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1030
 * 
 *     if (<memoryview>memviewslice.memview).flags & PyBUF_WRITABLE:
 *         result.flags = PyBUF_RECORDS             # <<<<<<<<<<<<<<
 *     else:
 *         result.flags = PyBUF_RECORDS_RO
 */
    __pyx_v_result->__pyx_base.flags = PyBUF_RECORDS;

    /* "View.MemoryView":1029
 *     Py_INCREF(Py_None)
 * 
 *     if (<memoryview>memviewslice.memview).flags & PyBUF_WRITABLE:             # <<<<<<<<<<<<<<
 *         result.flags = PyBUF_RECORDS
 *     else:
 */
    goto __pyx_L4;
  }

  /* "View.MemoryView":1032
 *         result.flags = PyBUF_RECORDS
 *     else:
 *         result.flags = PyBUF_RECORDS_RO             # <<<<<<<<<<<<<<
 * 
 *     result.view.shape = <Py_ssize_t *> result.from_slice.shape
 */
  /*else*/ {
    __pyx_v_result->__pyx_base.flags = PyBUF_RECORDS_RO;
  }
  __pyx_L4:;

  /* "View.MemoryView":1034
 *         result.flags = PyBUF_RECORDS_RO
 * 
 *     result.view.shape = <Py_ssize_t *> result.from_slice.shape             # <<<<<<<<<<<<<<
 *     result.view.strides = <Py_ssize_t *> result.from_slice.strides
 * 
 */
  __pyx_v_result->__pyx_base.view.shape = ((Py_ssize_t *)__pyx_v_result->from_slice.shape);

  /* "View.MemoryView":1035
 * 
 *     result.view.shape = <Py_ssize_t *> result.from_slice.shape
 *     result.view.strides = <Py_ssize_t *> result.from_slice.strides             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_v_result->__pyx_base.view.strides = ((Py_ssize_t *)__pyx_v_result->from_slice.strides);

  /* "View.MemoryView":1038
 * 
 * 
 *     result.view.suboffsets = NULL             # <<<<<<<<<<<<<<
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:
 */
  __pyx_v_result->__pyx_base.view.suboffsets = NULL;

  /* "View.MemoryView":1039
 * 
 *     result.view.suboffsets = NULL
 *     for suboffset in result.from_slice.suboffsets[:ndim]:             # <<<<<<<<<<<<<<
 *         if suboffset >= 0:
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 */
  __pyx_t_7 = (__pyx_v_result->from_slice.suboffsets + __pyx_v_ndim);
  for (__pyx_t_8 = __pyx_v_result->from_slice.suboffsets; __pyx_t_8 < __pyx_t_7; __pyx_t_8++) {
    __pyx_t_6 = __pyx_t_8;
    __pyx_v_suboffset = (__pyx_t_6[0]);

    /* "View.MemoryView":1040
 *     result.view.suboffsets = NULL
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 *             break
 */
    __pyx_t_1 = ((__pyx_v_suboffset >= 0) != 0);
    if (__pyx_t_1) {

      /* "View.MemoryView":1041
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_result->__pyx_base.view.suboffsets = ((Py_ssize_t *)__pyx_v_result->from_slice.suboffsets);

      /* "View.MemoryView":1042
 *         if suboffset >= 0:
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 *             break             # <<<<<<<<<<<<<<
 * 
 *     result.view.len = result.view.itemsize
 */
      goto __pyx_L6_break;

      /* "View.MemoryView":1040
 *     result.view.suboffsets = NULL
 *     for suboffset in result.from_slice.suboffsets[:ndim]:
 *         if suboffset >= 0:             # <<<<<<<<<<<<<<
 *             result.view.suboffsets = <Py_ssize_t *> result.from_slice.suboffsets
 *             break
 */
    }
  }
  __pyx_L6_break:;

  /* "View.MemoryView":1044
 *             break
 * 
 *     result.view.len = result.view.itemsize             # <<<<<<<<<<<<<<
 *     for length in result.view.shape[:ndim]:
 *         result.view.len *= length
 */
  __pyx_t_9 = __pyx_v_result->__pyx_base.view.itemsize;
  __pyx_v_result->__pyx_base.view.len = __pyx_t_9;

  /* "View.MemoryView":1045
 * 
 *     result.view.len = result.view.itemsize
 *     for length in result.view.shape[:ndim]:             # <<<<<<<<<<<<<<
 *         result.view.len *= length
 * 
 */
  __pyx_t_7 = (__pyx_v_result->__pyx_base.view.shape + __pyx_v_ndim);
  for (__pyx_t_8 = __pyx_v_result->__pyx_base.view.shape; __pyx_t_8 < __pyx_t_7; __pyx_t_8++) {
    __pyx_t_6 = __pyx_t_8;
    __pyx_t_2 = PyInt_FromSsize_t((__pyx_t_6[0])); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1045, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_XDECREF_SET(__pyx_v_length, __pyx_t_2);
    __pyx_t_2 = 0;

    /* "View.MemoryView":1046
 *     result.view.len = result.view.itemsize
 *     for length in result.view.shape[:ndim]:
 *         result.view.len *= length             # <<<<<<<<<<<<<<
 * 
 *     result.to_object_func = to_object_func
 */
    __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_result->__pyx_base.view.len); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1046, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __pyx_t_3 = PyNumber_InPlaceMultiply(__pyx_t_2, __pyx_v_length); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1046, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __pyx_t_9 = __Pyx_PyIndex_AsSsize_t(__pyx_t_3); if (unlikely((__pyx_t_9 == (Py_ssize_t)-1) && PyErr_Occurred())) __PYX_ERR(0, 1046, __pyx_L1_error)
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    __pyx_v_result->__pyx_base.view.len = __pyx_t_9;
  }

  /* "View.MemoryView":1048
 *         result.view.len *= length
 * 
 *     result.to_object_func = to_object_func             # <<<<<<<<<<<<<<
 *     result.to_dtype_func = to_dtype_func
 * 
 */
  __pyx_v_result->to_object_func = __pyx_v_to_object_func;

  /* "View.MemoryView":1049
 * 
 *     result.to_object_func = to_object_func
 *     result.to_dtype_func = to_dtype_func             # <<<<<<<<<<<<<<
 * 
 *     return result
 */
  __pyx_v_result->to_dtype_func = __pyx_v_to_dtype_func;

  /* "View.MemoryView":1051
 *     result.to_dtype_func = to_dtype_func
 * 
 *     return result             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_get_slice_from_memoryview')
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(((PyObject *)__pyx_v_result));
  __pyx_r = ((PyObject *)__pyx_v_result);
  goto __pyx_L0;

  /* "View.MemoryView":1001
 * 
 * @cname('__pyx_memoryview_fromslice')
 * cdef memoryview_fromslice(__Pyx_memviewslice memviewslice,             # <<<<<<<<<<<<<<
 *                           int ndim,
 *                           object (*to_object_func)(char *),
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.memoryview_fromslice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_result);
  __Pyx_XDECREF(__pyx_v_length);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1054
 * 
 * @cname('__pyx_memoryview_get_slice_from_memoryview')
 * cdef __Pyx_memviewslice *get_slice_from_memview(memoryview memview,             # <<<<<<<<<<<<<<
 *                                                    __Pyx_memviewslice *mslice) except NULL:
 *     cdef _memoryviewslice obj
 */

static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __pyx_memoryview_obj *__pyx_v_memview, __Pyx_memviewslice *__pyx_v_mslice) {
  struct __pyx_memoryviewslice_obj *__pyx_v_obj = 0;
  __Pyx_memviewslice *__pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *__pyx_t_3 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("get_slice_from_memview", 0);

  /* "View.MemoryView":1057
 *                                                    __Pyx_memviewslice *mslice) except NULL:
 *     cdef _memoryviewslice obj
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         obj = memview
 *         return &obj.from_slice
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1058
 *     cdef _memoryviewslice obj
 *     if isinstance(memview, _memoryviewslice):
 *         obj = memview             # <<<<<<<<<<<<<<
 *         return &obj.from_slice
 *     else:
 */
    if (!(likely(((((PyObject *)__pyx_v_memview)) == Py_None) || likely(__Pyx_TypeTest(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type))))) __PYX_ERR(0, 1058, __pyx_L1_error)
    __pyx_t_3 = ((PyObject *)__pyx_v_memview);
    __Pyx_INCREF(__pyx_t_3);
    __pyx_v_obj = ((struct __pyx_memoryviewslice_obj *)__pyx_t_3);
    __pyx_t_3 = 0;

    /* "View.MemoryView":1059
 *     if isinstance(memview, _memoryviewslice):
 *         obj = memview
 *         return &obj.from_slice             # <<<<<<<<<<<<<<
 *     else:
 *         slice_copy(memview, mslice)
 */
    __pyx_r = (&__pyx_v_obj->from_slice);
    goto __pyx_L0;

    /* "View.MemoryView":1057
 *                                                    __Pyx_memviewslice *mslice) except NULL:
 *     cdef _memoryviewslice obj
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         obj = memview
 *         return &obj.from_slice
 */
  }

  /* "View.MemoryView":1061
 *         return &obj.from_slice
 *     else:
 *         slice_copy(memview, mslice)             # <<<<<<<<<<<<<<
 *         return mslice
 * 
 */
  /*else*/ {
    __pyx_memoryview_slice_copy(__pyx_v_memview, __pyx_v_mslice);

    /* "View.MemoryView":1062
 *     else:
 *         slice_copy(memview, mslice)
 *         return mslice             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_slice_copy')
 */
    __pyx_r = __pyx_v_mslice;
    goto __pyx_L0;
  }

  /* "View.MemoryView":1054
 * 
 * @cname('__pyx_memoryview_get_slice_from_memoryview')
 * cdef __Pyx_memviewslice *get_slice_from_memview(memoryview memview,             # <<<<<<<<<<<<<<
 *                                                    __Pyx_memviewslice *mslice) except NULL:
 *     cdef _memoryviewslice obj
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_AddTraceback("View.MemoryView.get_slice_from_memview", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF((PyObject *)__pyx_v_obj);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1065
 * 
 * @cname('__pyx_memoryview_slice_copy')
 * cdef void slice_copy(memoryview memview, __Pyx_memviewslice *dst):             # <<<<<<<<<<<<<<
 *     cdef int dim
 *     cdef (Py_ssize_t*) shape, strides, suboffsets
 */

static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *__pyx_v_memview, __Pyx_memviewslice *__pyx_v_dst) {
  int __pyx_v_dim;
  Py_ssize_t *__pyx_v_shape;
  Py_ssize_t *__pyx_v_strides;
  Py_ssize_t *__pyx_v_suboffsets;
  __Pyx_RefNannyDeclarations
  Py_ssize_t *__pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  Py_ssize_t __pyx_t_5;
  __Pyx_RefNannySetupContext("slice_copy", 0);

  /* "View.MemoryView":1069
 *     cdef (Py_ssize_t*) shape, strides, suboffsets
 * 
 *     shape = memview.view.shape             # <<<<<<<<<<<<<<
 *     strides = memview.view.strides
 *     suboffsets = memview.view.suboffsets
 */
  __pyx_t_1 = __pyx_v_memview->view.shape;
  __pyx_v_shape = __pyx_t_1;

  /* "View.MemoryView":1070
 * 
 *     shape = memview.view.shape
 *     strides = memview.view.strides             # <<<<<<<<<<<<<<
 *     suboffsets = memview.view.suboffsets
 * 
 */
  __pyx_t_1 = __pyx_v_memview->view.strides;
  __pyx_v_strides = __pyx_t_1;

  /* "View.MemoryView":1071
 *     shape = memview.view.shape
 *     strides = memview.view.strides
 *     suboffsets = memview.view.suboffsets             # <<<<<<<<<<<<<<
 * 
 *     dst.memview = <__pyx_memoryview *> memview
 */
  __pyx_t_1 = __pyx_v_memview->view.suboffsets;
  __pyx_v_suboffsets = __pyx_t_1;

  /* "View.MemoryView":1073
 *     suboffsets = memview.view.suboffsets
 * 
 *     dst.memview = <__pyx_memoryview *> memview             # <<<<<<<<<<<<<<
 *     dst.data = <char *> memview.view.buf
 * 
 */
  __pyx_v_dst->memview = ((struct __pyx_memoryview_obj *)__pyx_v_memview);

  /* "View.MemoryView":1074
 * 
 *     dst.memview = <__pyx_memoryview *> memview
 *     dst.data = <char *> memview.view.buf             # <<<<<<<<<<<<<<
 * 
 *     for dim in range(memview.view.ndim):
 */
  __pyx_v_dst->data = ((char *)__pyx_v_memview->view.buf);

  /* "View.MemoryView":1076
 *     dst.data = <char *> memview.view.buf
 * 
 *     for dim in range(memview.view.ndim):             # <<<<<<<<<<<<<<
 *         dst.shape[dim] = shape[dim]
 *         dst.strides[dim] = strides[dim]
 */
  __pyx_t_2 = __pyx_v_memview->view.ndim;
  __pyx_t_3 = __pyx_t_2;
  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
    __pyx_v_dim = __pyx_t_4;

    /* "View.MemoryView":1077
 * 
 *     for dim in range(memview.view.ndim):
 *         dst.shape[dim] = shape[dim]             # <<<<<<<<<<<<<<
 *         dst.strides[dim] = strides[dim]
 *         dst.suboffsets[dim] = suboffsets[dim] if suboffsets else -1
 */
    (__pyx_v_dst->shape[__pyx_v_dim]) = (__pyx_v_shape[__pyx_v_dim]);

    /* "View.MemoryView":1078
 *     for dim in range(memview.view.ndim):
 *         dst.shape[dim] = shape[dim]
 *         dst.strides[dim] = strides[dim]             # <<<<<<<<<<<<<<
 *         dst.suboffsets[dim] = suboffsets[dim] if suboffsets else -1
 * 
 */
    (__pyx_v_dst->strides[__pyx_v_dim]) = (__pyx_v_strides[__pyx_v_dim]);

    /* "View.MemoryView":1079
 *         dst.shape[dim] = shape[dim]
 *         dst.strides[dim] = strides[dim]
 *         dst.suboffsets[dim] = suboffsets[dim] if suboffsets else -1             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_object')
 */
    if ((__pyx_v_suboffsets != 0)) {
      __pyx_t_5 = (__pyx_v_suboffsets[__pyx_v_dim]);
    } else {
      __pyx_t_5 = -1L;
    }
    (__pyx_v_dst->suboffsets[__pyx_v_dim]) = __pyx_t_5;
  }

  /* "View.MemoryView":1065
 * 
 * @cname('__pyx_memoryview_slice_copy')
 * cdef void slice_copy(memoryview memview, __Pyx_memviewslice *dst):             # <<<<<<<<<<<<<<
 *     cdef int dim
 *     cdef (Py_ssize_t*) shape, strides, suboffsets
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":1082
 * 
 * @cname('__pyx_memoryview_copy_object')
 * cdef memoryview_copy(memoryview memview):             # <<<<<<<<<<<<<<
 *     "Create a new memoryview object"
 *     cdef __Pyx_memviewslice memviewslice
 */

static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *__pyx_v_memview) {
  __Pyx_memviewslice __pyx_v_memviewslice;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_copy", 0);

  /* "View.MemoryView":1085
 *     "Create a new memoryview object"
 *     cdef __Pyx_memviewslice memviewslice
 *     slice_copy(memview, &memviewslice)             # <<<<<<<<<<<<<<
 *     return memoryview_copy_from_slice(memview, &memviewslice)
 * 
 */
  __pyx_memoryview_slice_copy(__pyx_v_memview, (&__pyx_v_memviewslice));

  /* "View.MemoryView":1086
 *     cdef __Pyx_memviewslice memviewslice
 *     slice_copy(memview, &memviewslice)
 *     return memoryview_copy_from_slice(memview, &memviewslice)             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_object_from_slice')
 */
  __Pyx_XDECREF(__pyx_r);
  __pyx_t_1 = __pyx_memoryview_copy_object_from_slice(__pyx_v_memview, (&__pyx_v_memviewslice)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1086, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_r = __pyx_t_1;
  __pyx_t_1 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":1082
 * 
 * @cname('__pyx_memoryview_copy_object')
 * cdef memoryview_copy(memoryview memview):             # <<<<<<<<<<<<<<
 *     "Create a new memoryview object"
 *     cdef __Pyx_memviewslice memviewslice
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_AddTraceback("View.MemoryView.memoryview_copy", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1089
 * 
 * @cname('__pyx_memoryview_copy_object_from_slice')
 * cdef memoryview_copy_from_slice(memoryview memview, __Pyx_memviewslice *memviewslice):             # <<<<<<<<<<<<<<
 *     """
 *     Create a new memoryview object from a given memoryview object and slice.
 */

static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview_obj *__pyx_v_memview, __Pyx_memviewslice *__pyx_v_memviewslice) {
  PyObject *(*__pyx_v_to_object_func)(char *);
  int (*__pyx_v_to_dtype_func)(char *, PyObject *);
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  int __pyx_t_2;
  PyObject *(*__pyx_t_3)(char *);
  int (*__pyx_t_4)(char *, PyObject *);
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("memoryview_copy_from_slice", 0);

  /* "View.MemoryView":1096
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 */
  __pyx_t_1 = __Pyx_TypeCheck(((PyObject *)__pyx_v_memview), __pyx_memoryviewslice_type); 
  __pyx_t_2 = (__pyx_t_1 != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1097
 * 
 *     if isinstance(memview, _memoryviewslice):
 *         to_object_func = (<_memoryviewslice> memview).to_object_func             # <<<<<<<<<<<<<<
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 *     else:
 */
    __pyx_t_3 = ((struct __pyx_memoryviewslice_obj *)__pyx_v_memview)->to_object_func;
    __pyx_v_to_object_func = __pyx_t_3;

    /* "View.MemoryView":1098
 *     if isinstance(memview, _memoryviewslice):
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func             # <<<<<<<<<<<<<<
 *     else:
 *         to_object_func = NULL
 */
    __pyx_t_4 = ((struct __pyx_memoryviewslice_obj *)__pyx_v_memview)->to_dtype_func;
    __pyx_v_to_dtype_func = __pyx_t_4;

    /* "View.MemoryView":1096
 *     cdef int (*to_dtype_func)(char *, object) except 0
 * 
 *     if isinstance(memview, _memoryviewslice):             # <<<<<<<<<<<<<<
 *         to_object_func = (<_memoryviewslice> memview).to_object_func
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1100
 *         to_dtype_func = (<_memoryviewslice> memview).to_dtype_func
 *     else:
 *         to_object_func = NULL             # <<<<<<<<<<<<<<
 *         to_dtype_func = NULL
 * 
 */
  /*else*/ {
    __pyx_v_to_object_func = NULL;

    /* "View.MemoryView":1101
 *     else:
 *         to_object_func = NULL
 *         to_dtype_func = NULL             # <<<<<<<<<<<<<<
 * 
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,
 */
    __pyx_v_to_dtype_func = NULL;
  }
  __pyx_L3:;

  /* "View.MemoryView":1103
 *         to_dtype_func = NULL
 * 
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,             # <<<<<<<<<<<<<<
 *                                 to_object_func, to_dtype_func,
 *                                 memview.dtype_is_object)
 */
  __Pyx_XDECREF(__pyx_r);

  /* "View.MemoryView":1105
 *     return memoryview_fromslice(memviewslice[0], memview.view.ndim,
 *                                 to_object_func, to_dtype_func,
 *                                 memview.dtype_is_object)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_5 = __pyx_memoryview_fromslice((__pyx_v_memviewslice[0]), __pyx_v_memview->view.ndim, __pyx_v_to_object_func, __pyx_v_to_dtype_func, __pyx_v_memview->dtype_is_object); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1103, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_5);
  __pyx_r = __pyx_t_5;
  __pyx_t_5 = 0;
  goto __pyx_L0;

  /* "View.MemoryView":1089
 * 
 * @cname('__pyx_memoryview_copy_object_from_slice')
 * cdef memoryview_copy_from_slice(memoryview memview, __Pyx_memviewslice *memviewslice):             # <<<<<<<<<<<<<<
 *     """
 *     Create a new memoryview object from a given memoryview object and slice.
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView.memoryview_copy_from_slice", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "View.MemoryView":1111
 * 
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:             # <<<<<<<<<<<<<<
 *     if arg < 0:
 *         return -arg
 */

static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) {
  Py_ssize_t __pyx_r;
  int __pyx_t_1;

  /* "View.MemoryView":1112
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:             # <<<<<<<<<<<<<<
 *         return -arg
 *     else:
 */
  __pyx_t_1 = ((__pyx_v_arg < 0) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1113
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:
 *         return -arg             # <<<<<<<<<<<<<<
 *     else:
 *         return arg
 */
    __pyx_r = (-__pyx_v_arg);
    goto __pyx_L0;

    /* "View.MemoryView":1112
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:
 *     if arg < 0:             # <<<<<<<<<<<<<<
 *         return -arg
 *     else:
 */
  }

  /* "View.MemoryView":1115
 *         return -arg
 *     else:
 *         return arg             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_get_best_slice_order')
 */
  /*else*/ {
    __pyx_r = __pyx_v_arg;
    goto __pyx_L0;
  }

  /* "View.MemoryView":1111
 * 
 * 
 * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil:             # <<<<<<<<<<<<<<
 *     if arg < 0:
 *         return -arg
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1118
 * 
 * @cname('__pyx_get_best_slice_order')
 * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     Figure out the best memory access order for a given slice.
 */

static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int __pyx_v_ndim) {
  int __pyx_v_i;
  Py_ssize_t __pyx_v_c_stride;
  Py_ssize_t __pyx_v_f_stride;
  char __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;

  /* "View.MemoryView":1123
 *     """
 *     cdef int i
 *     cdef Py_ssize_t c_stride = 0             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t f_stride = 0
 * 
 */
  __pyx_v_c_stride = 0;

  /* "View.MemoryView":1124
 *     cdef int i
 *     cdef Py_ssize_t c_stride = 0
 *     cdef Py_ssize_t f_stride = 0             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim - 1, -1, -1):
 */
  __pyx_v_f_stride = 0;

  /* "View.MemoryView":1126
 *     cdef Py_ssize_t f_stride = 0
 * 
 *     for i in range(ndim - 1, -1, -1):             # <<<<<<<<<<<<<<
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]
 */
  for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1; __pyx_t_1-=1) {
    __pyx_v_i = __pyx_t_1;

    /* "View.MemoryView":1127
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             c_stride = mslice.strides[i]
 *             break
 */
    __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1128
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_c_stride = (__pyx_v_mslice->strides[__pyx_v_i]);

      /* "View.MemoryView":1129
 *         if mslice.shape[i] > 1:
 *             c_stride = mslice.strides[i]
 *             break             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim):
 */
      goto __pyx_L4_break;

      /* "View.MemoryView":1127
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             c_stride = mslice.strides[i]
 *             break
 */
    }
  }
  __pyx_L4_break:;

  /* "View.MemoryView":1131
 *             break
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]
 */
  __pyx_t_1 = __pyx_v_ndim;
  __pyx_t_3 = __pyx_t_1;
  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
    __pyx_v_i = __pyx_t_4;

    /* "View.MemoryView":1132
 * 
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             f_stride = mslice.strides[i]
 *             break
 */
    __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1133
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]             # <<<<<<<<<<<<<<
 *             break
 * 
 */
      __pyx_v_f_stride = (__pyx_v_mslice->strides[__pyx_v_i]);

      /* "View.MemoryView":1134
 *         if mslice.shape[i] > 1:
 *             f_stride = mslice.strides[i]
 *             break             # <<<<<<<<<<<<<<
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):
 */
      goto __pyx_L7_break;

      /* "View.MemoryView":1132
 * 
 *     for i in range(ndim):
 *         if mslice.shape[i] > 1:             # <<<<<<<<<<<<<<
 *             f_stride = mslice.strides[i]
 *             break
 */
    }
  }
  __pyx_L7_break:;

  /* "View.MemoryView":1136
 *             break
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):             # <<<<<<<<<<<<<<
 *         return 'C'
 *     else:
 */
  __pyx_t_2 = ((abs_py_ssize_t(__pyx_v_c_stride) <= abs_py_ssize_t(__pyx_v_f_stride)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1137
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):
 *         return 'C'             # <<<<<<<<<<<<<<
 *     else:
 *         return 'F'
 */
    __pyx_r = 'C';
    goto __pyx_L0;

    /* "View.MemoryView":1136
 *             break
 * 
 *     if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride):             # <<<<<<<<<<<<<<
 *         return 'C'
 *     else:
 */
  }

  /* "View.MemoryView":1139
 *         return 'C'
 *     else:
 *         return 'F'             # <<<<<<<<<<<<<<
 * 
 * @cython.cdivision(True)
 */
  /*else*/ {
    __pyx_r = 'F';
    goto __pyx_L0;
  }

  /* "View.MemoryView":1118
 * 
 * @cname('__pyx_get_best_slice_order')
 * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     Figure out the best memory access order for a given slice.
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1142
 * 
 * @cython.cdivision(True)
 * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides,             # <<<<<<<<<<<<<<
 *                                    char *dst_data, Py_ssize_t *dst_strides,
 *                                    Py_ssize_t *src_shape, Py_ssize_t *dst_shape,
 */

static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v_src_strides, char *__pyx_v_dst_data, Py_ssize_t *__pyx_v_dst_strides, Py_ssize_t *__pyx_v_src_shape, Py_ssize_t *__pyx_v_dst_shape, int __pyx_v_ndim, size_t __pyx_v_itemsize) {
  CYTHON_UNUSED Py_ssize_t __pyx_v_i;
  CYTHON_UNUSED Py_ssize_t __pyx_v_src_extent;
  Py_ssize_t __pyx_v_dst_extent;
  Py_ssize_t __pyx_v_src_stride;
  Py_ssize_t __pyx_v_dst_stride;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  Py_ssize_t __pyx_t_4;
  Py_ssize_t __pyx_t_5;
  Py_ssize_t __pyx_t_6;

  /* "View.MemoryView":1149
 * 
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t src_extent = src_shape[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]
 */
  __pyx_v_src_extent = (__pyx_v_src_shape[0]);

  /* "View.MemoryView":1150
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t src_extent = src_shape[0]
 *     cdef Py_ssize_t dst_extent = dst_shape[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t src_stride = src_strides[0]
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 */
  __pyx_v_dst_extent = (__pyx_v_dst_shape[0]);

  /* "View.MemoryView":1151
 *     cdef Py_ssize_t src_extent = src_shape[0]
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 */
  __pyx_v_src_stride = (__pyx_v_src_strides[0]);

  /* "View.MemoryView":1152
 *     cdef Py_ssize_t dst_extent = dst_shape[0]
 *     cdef Py_ssize_t src_stride = src_strides[0]
 *     cdef Py_ssize_t dst_stride = dst_strides[0]             # <<<<<<<<<<<<<<
 * 
 *     if ndim == 1:
 */
  __pyx_v_dst_stride = (__pyx_v_dst_strides[0]);

  /* "View.MemoryView":1154
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 */
  __pyx_t_1 = ((__pyx_v_ndim == 1) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1155
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
    __pyx_t_2 = ((__pyx_v_src_stride > 0) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L5_bool_binop_done;
    }
    __pyx_t_2 = ((__pyx_v_dst_stride > 0) != 0);
    if (__pyx_t_2) {
    } else {
      __pyx_t_1 = __pyx_t_2;
      goto __pyx_L5_bool_binop_done;
    }

    /* "View.MemoryView":1156
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):             # <<<<<<<<<<<<<<
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 *        else:
 */
    __pyx_t_2 = (((size_t)__pyx_v_src_stride) == __pyx_v_itemsize);
    if (__pyx_t_2) {
      __pyx_t_2 = (__pyx_v_itemsize == ((size_t)__pyx_v_dst_stride));
    }
    __pyx_t_3 = (__pyx_t_2 != 0);
    __pyx_t_1 = __pyx_t_3;
    __pyx_L5_bool_binop_done:;

    /* "View.MemoryView":1155
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
    if (__pyx_t_1) {

      /* "View.MemoryView":1157
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)             # <<<<<<<<<<<<<<
 *        else:
 *            for i in range(dst_extent):
 */
      (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, (__pyx_v_itemsize * __pyx_v_dst_extent)));

      /* "View.MemoryView":1155
 * 
 *     if ndim == 1:
 *        if (src_stride > 0 and dst_stride > 0 and             # <<<<<<<<<<<<<<
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 */
      goto __pyx_L4;
    }

    /* "View.MemoryView":1159
 *            memcpy(dst_data, src_data, itemsize * dst_extent)
 *        else:
 *            for i in range(dst_extent):             # <<<<<<<<<<<<<<
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride
 */
    /*else*/ {
      __pyx_t_4 = __pyx_v_dst_extent;
      __pyx_t_5 = __pyx_t_4;
      for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
        __pyx_v_i = __pyx_t_6;

        /* "View.MemoryView":1160
 *        else:
 *            for i in range(dst_extent):
 *                memcpy(dst_data, src_data, itemsize)             # <<<<<<<<<<<<<<
 *                src_data += src_stride
 *                dst_data += dst_stride
 */
        (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, __pyx_v_itemsize));

        /* "View.MemoryView":1161
 *            for i in range(dst_extent):
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride             # <<<<<<<<<<<<<<
 *                dst_data += dst_stride
 *     else:
 */
        __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride);

        /* "View.MemoryView":1162
 *                memcpy(dst_data, src_data, itemsize)
 *                src_data += src_stride
 *                dst_data += dst_stride             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(dst_extent):
 */
        __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride);
      }
    }
    __pyx_L4:;

    /* "View.MemoryView":1154
 *     cdef Py_ssize_t dst_stride = dst_strides[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *        if (src_stride > 0 and dst_stride > 0 and
 *            <size_t> src_stride == itemsize == <size_t> dst_stride):
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1164
 *                dst_data += dst_stride
 *     else:
 *         for i in range(dst_extent):             # <<<<<<<<<<<<<<
 *             _copy_strided_to_strided(src_data, src_strides + 1,
 *                                      dst_data, dst_strides + 1,
 */
  /*else*/ {
    __pyx_t_4 = __pyx_v_dst_extent;
    __pyx_t_5 = __pyx_t_4;
    for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
      __pyx_v_i = __pyx_t_6;

      /* "View.MemoryView":1165
 *     else:
 *         for i in range(dst_extent):
 *             _copy_strided_to_strided(src_data, src_strides + 1,             # <<<<<<<<<<<<<<
 *                                      dst_data, dst_strides + 1,
 *                                      src_shape + 1, dst_shape + 1,
 */
      _copy_strided_to_strided(__pyx_v_src_data, (__pyx_v_src_strides + 1), __pyx_v_dst_data, (__pyx_v_dst_strides + 1), (__pyx_v_src_shape + 1), (__pyx_v_dst_shape + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize);

      /* "View.MemoryView":1169
 *                                      src_shape + 1, dst_shape + 1,
 *                                      ndim - 1, itemsize)
 *             src_data += src_stride             # <<<<<<<<<<<<<<
 *             dst_data += dst_stride
 * 
 */
      __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride);

      /* "View.MemoryView":1170
 *                                      ndim - 1, itemsize)
 *             src_data += src_stride
 *             dst_data += dst_stride             # <<<<<<<<<<<<<<
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,
 */
      __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride);
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":1142
 * 
 * @cython.cdivision(True)
 * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides,             # <<<<<<<<<<<<<<
 *                                    char *dst_data, Py_ssize_t *dst_strides,
 *                                    Py_ssize_t *src_shape, Py_ssize_t *dst_shape,
 */

  /* function exit code */
}

/* "View.MemoryView":1172
 *             dst_data += dst_stride
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 */

static void copy_strided_to_strided(__Pyx_memviewslice *__pyx_v_src, __Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize) {

  /* "View.MemoryView":1175
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 *     _copy_strided_to_strided(src.data, src.strides, dst.data, dst.strides,             # <<<<<<<<<<<<<<
 *                              src.shape, dst.shape, ndim, itemsize)
 * 
 */
  _copy_strided_to_strided(__pyx_v_src->data, __pyx_v_src->strides, __pyx_v_dst->data, __pyx_v_dst->strides, __pyx_v_src->shape, __pyx_v_dst->shape, __pyx_v_ndim, __pyx_v_itemsize);

  /* "View.MemoryView":1172
 *             dst_data += dst_stride
 * 
 * cdef void copy_strided_to_strided(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice *dst,
 *                                   int ndim, size_t itemsize) nogil:
 */

  /* function exit code */
}

/* "View.MemoryView":1179
 * 
 * @cname('__pyx_memoryview_slice_get_size')
 * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     "Return the size of the memory occupied by the slice in number of bytes"
 *     cdef Py_ssize_t shape, size = src.memview.view.itemsize
 */

static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_src, int __pyx_v_ndim) {
  Py_ssize_t __pyx_v_shape;
  Py_ssize_t __pyx_v_size;
  Py_ssize_t __pyx_r;
  Py_ssize_t __pyx_t_1;
  Py_ssize_t *__pyx_t_2;
  Py_ssize_t *__pyx_t_3;
  Py_ssize_t *__pyx_t_4;

  /* "View.MemoryView":1181
 * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil:
 *     "Return the size of the memory occupied by the slice in number of bytes"
 *     cdef Py_ssize_t shape, size = src.memview.view.itemsize             # <<<<<<<<<<<<<<
 * 
 *     for shape in src.shape[:ndim]:
 */
  __pyx_t_1 = __pyx_v_src->memview->view.itemsize;
  __pyx_v_size = __pyx_t_1;

  /* "View.MemoryView":1183
 *     cdef Py_ssize_t shape, size = src.memview.view.itemsize
 * 
 *     for shape in src.shape[:ndim]:             # <<<<<<<<<<<<<<
 *         size *= shape
 * 
 */
  __pyx_t_3 = (__pyx_v_src->shape + __pyx_v_ndim);
  for (__pyx_t_4 = __pyx_v_src->shape; __pyx_t_4 < __pyx_t_3; __pyx_t_4++) {
    __pyx_t_2 = __pyx_t_4;
    __pyx_v_shape = (__pyx_t_2[0]);

    /* "View.MemoryView":1184
 * 
 *     for shape in src.shape[:ndim]:
 *         size *= shape             # <<<<<<<<<<<<<<
 * 
 *     return size
 */
    __pyx_v_size = (__pyx_v_size * __pyx_v_shape);
  }

  /* "View.MemoryView":1186
 *         size *= shape
 * 
 *     return size             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_fill_contig_strides_array')
 */
  __pyx_r = __pyx_v_size;
  goto __pyx_L0;

  /* "View.MemoryView":1179
 * 
 * @cname('__pyx_memoryview_slice_get_size')
 * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil:             # <<<<<<<<<<<<<<
 *     "Return the size of the memory occupied by the slice in number of bytes"
 *     cdef Py_ssize_t shape, size = src.memview.view.itemsize
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1189
 * 
 * @cname('__pyx_fill_contig_strides_array')
 * cdef Py_ssize_t fill_contig_strides_array(             # <<<<<<<<<<<<<<
 *                 Py_ssize_t *shape, Py_ssize_t *strides, Py_ssize_t stride,
 *                 int ndim, char order) nogil:
 */

static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, Py_ssize_t __pyx_v_stride, int __pyx_v_ndim, char __pyx_v_order) {
  int __pyx_v_idx;
  Py_ssize_t __pyx_r;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;

  /* "View.MemoryView":1198
 *     cdef int idx
 * 
 *     if order == 'F':             # <<<<<<<<<<<<<<
 *         for idx in range(ndim):
 *             strides[idx] = stride
 */
  __pyx_t_1 = ((__pyx_v_order == 'F') != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1199
 * 
 *     if order == 'F':
 *         for idx in range(ndim):             # <<<<<<<<<<<<<<
 *             strides[idx] = stride
 *             stride *= shape[idx]
 */
    __pyx_t_2 = __pyx_v_ndim;
    __pyx_t_3 = __pyx_t_2;
    for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
      __pyx_v_idx = __pyx_t_4;

      /* "View.MemoryView":1200
 *     if order == 'F':
 *         for idx in range(ndim):
 *             strides[idx] = stride             # <<<<<<<<<<<<<<
 *             stride *= shape[idx]
 *     else:
 */
      (__pyx_v_strides[__pyx_v_idx]) = __pyx_v_stride;

      /* "View.MemoryView":1201
 *         for idx in range(ndim):
 *             strides[idx] = stride
 *             stride *= shape[idx]             # <<<<<<<<<<<<<<
 *     else:
 *         for idx in range(ndim - 1, -1, -1):
 */
      __pyx_v_stride = (__pyx_v_stride * (__pyx_v_shape[__pyx_v_idx]));
    }

    /* "View.MemoryView":1198
 *     cdef int idx
 * 
 *     if order == 'F':             # <<<<<<<<<<<<<<
 *         for idx in range(ndim):
 *             strides[idx] = stride
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1203
 *             stride *= shape[idx]
 *     else:
 *         for idx in range(ndim - 1, -1, -1):             # <<<<<<<<<<<<<<
 *             strides[idx] = stride
 *             stride *= shape[idx]
 */
  /*else*/ {
    for (__pyx_t_2 = (__pyx_v_ndim - 1); __pyx_t_2 > -1; __pyx_t_2-=1) {
      __pyx_v_idx = __pyx_t_2;

      /* "View.MemoryView":1204
 *     else:
 *         for idx in range(ndim - 1, -1, -1):
 *             strides[idx] = stride             # <<<<<<<<<<<<<<
 *             stride *= shape[idx]
 * 
 */
      (__pyx_v_strides[__pyx_v_idx]) = __pyx_v_stride;

      /* "View.MemoryView":1205
 *         for idx in range(ndim - 1, -1, -1):
 *             strides[idx] = stride
 *             stride *= shape[idx]             # <<<<<<<<<<<<<<
 * 
 *     return stride
 */
      __pyx_v_stride = (__pyx_v_stride * (__pyx_v_shape[__pyx_v_idx]));
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":1207
 *             stride *= shape[idx]
 * 
 *     return stride             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_data_to_temp')
 */
  __pyx_r = __pyx_v_stride;
  goto __pyx_L0;

  /* "View.MemoryView":1189
 * 
 * @cname('__pyx_fill_contig_strides_array')
 * cdef Py_ssize_t fill_contig_strides_array(             # <<<<<<<<<<<<<<
 *                 Py_ssize_t *shape, Py_ssize_t *strides, Py_ssize_t stride,
 *                 int ndim, char order) nogil:
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1210
 * 
 * @cname('__pyx_memoryview_copy_data_to_temp')
 * cdef void *copy_data_to_temp(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                              __Pyx_memviewslice *tmpslice,
 *                              char order,
 */

static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *__pyx_v_src, __Pyx_memviewslice *__pyx_v_tmpslice, char __pyx_v_order, int __pyx_v_ndim) {
  int __pyx_v_i;
  void *__pyx_v_result;
  size_t __pyx_v_itemsize;
  size_t __pyx_v_size;
  void *__pyx_r;
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  struct __pyx_memoryview_obj *__pyx_t_4;
  int __pyx_t_5;
  int __pyx_t_6;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":1221
 *     cdef void *result
 * 
 *     cdef size_t itemsize = src.memview.view.itemsize             # <<<<<<<<<<<<<<
 *     cdef size_t size = slice_get_size(src, ndim)
 * 
 */
  __pyx_t_1 = __pyx_v_src->memview->view.itemsize;
  __pyx_v_itemsize = __pyx_t_1;

  /* "View.MemoryView":1222
 * 
 *     cdef size_t itemsize = src.memview.view.itemsize
 *     cdef size_t size = slice_get_size(src, ndim)             # <<<<<<<<<<<<<<
 * 
 *     result = malloc(size)
 */
  __pyx_v_size = __pyx_memoryview_slice_get_size(__pyx_v_src, __pyx_v_ndim);

  /* "View.MemoryView":1224
 *     cdef size_t size = slice_get_size(src, ndim)
 * 
 *     result = malloc(size)             # <<<<<<<<<<<<<<
 *     if not result:
 *         _err(MemoryError, NULL)
 */
  __pyx_v_result = malloc(__pyx_v_size);

  /* "View.MemoryView":1225
 * 
 *     result = malloc(size)
 *     if not result:             # <<<<<<<<<<<<<<
 *         _err(MemoryError, NULL)
 * 
 */
  __pyx_t_2 = ((!(__pyx_v_result != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1226
 *     result = malloc(size)
 *     if not result:
 *         _err(MemoryError, NULL)             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_t_3 = __pyx_memoryview_err(__pyx_builtin_MemoryError, NULL); if (unlikely(__pyx_t_3 == ((int)-1))) __PYX_ERR(0, 1226, __pyx_L1_error)

    /* "View.MemoryView":1225
 * 
 *     result = malloc(size)
 *     if not result:             # <<<<<<<<<<<<<<
 *         _err(MemoryError, NULL)
 * 
 */
  }

  /* "View.MemoryView":1229
 * 
 * 
 *     tmpslice.data = <char *> result             # <<<<<<<<<<<<<<
 *     tmpslice.memview = src.memview
 *     for i in range(ndim):
 */
  __pyx_v_tmpslice->data = ((char *)__pyx_v_result);

  /* "View.MemoryView":1230
 * 
 *     tmpslice.data = <char *> result
 *     tmpslice.memview = src.memview             # <<<<<<<<<<<<<<
 *     for i in range(ndim):
 *         tmpslice.shape[i] = src.shape[i]
 */
  __pyx_t_4 = __pyx_v_src->memview;
  __pyx_v_tmpslice->memview = __pyx_t_4;

  /* "View.MemoryView":1231
 *     tmpslice.data = <char *> result
 *     tmpslice.memview = src.memview
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         tmpslice.shape[i] = src.shape[i]
 *         tmpslice.suboffsets[i] = -1
 */
  __pyx_t_3 = __pyx_v_ndim;
  __pyx_t_5 = __pyx_t_3;
  for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
    __pyx_v_i = __pyx_t_6;

    /* "View.MemoryView":1232
 *     tmpslice.memview = src.memview
 *     for i in range(ndim):
 *         tmpslice.shape[i] = src.shape[i]             # <<<<<<<<<<<<<<
 *         tmpslice.suboffsets[i] = -1
 * 
 */
    (__pyx_v_tmpslice->shape[__pyx_v_i]) = (__pyx_v_src->shape[__pyx_v_i]);

    /* "View.MemoryView":1233
 *     for i in range(ndim):
 *         tmpslice.shape[i] = src.shape[i]
 *         tmpslice.suboffsets[i] = -1             # <<<<<<<<<<<<<<
 * 
 *     fill_contig_strides_array(&tmpslice.shape[0], &tmpslice.strides[0], itemsize,
 */
    (__pyx_v_tmpslice->suboffsets[__pyx_v_i]) = -1L;
  }

  /* "View.MemoryView":1235
 *         tmpslice.suboffsets[i] = -1
 * 
 *     fill_contig_strides_array(&tmpslice.shape[0], &tmpslice.strides[0], itemsize,             # <<<<<<<<<<<<<<
 *                               ndim, order)
 * 
 */
  (void)(__pyx_fill_contig_strides_array((&(__pyx_v_tmpslice->shape[0])), (&(__pyx_v_tmpslice->strides[0])), __pyx_v_itemsize, __pyx_v_ndim, __pyx_v_order));

  /* "View.MemoryView":1239
 * 
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         if tmpslice.shape[i] == 1:
 *             tmpslice.strides[i] = 0
 */
  __pyx_t_3 = __pyx_v_ndim;
  __pyx_t_5 = __pyx_t_3;
  for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
    __pyx_v_i = __pyx_t_6;

    /* "View.MemoryView":1240
 * 
 *     for i in range(ndim):
 *         if tmpslice.shape[i] == 1:             # <<<<<<<<<<<<<<
 *             tmpslice.strides[i] = 0
 * 
 */
    __pyx_t_2 = (((__pyx_v_tmpslice->shape[__pyx_v_i]) == 1) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1241
 *     for i in range(ndim):
 *         if tmpslice.shape[i] == 1:
 *             tmpslice.strides[i] = 0             # <<<<<<<<<<<<<<
 * 
 *     if slice_is_contig(src[0], order, ndim):
 */
      (__pyx_v_tmpslice->strides[__pyx_v_i]) = 0;

      /* "View.MemoryView":1240
 * 
 *     for i in range(ndim):
 *         if tmpslice.shape[i] == 1:             # <<<<<<<<<<<<<<
 *             tmpslice.strides[i] = 0
 * 
 */
    }
  }

  /* "View.MemoryView":1243
 *             tmpslice.strides[i] = 0
 * 
 *     if slice_is_contig(src[0], order, ndim):             # <<<<<<<<<<<<<<
 *         memcpy(result, src.data, size)
 *     else:
 */
  __pyx_t_2 = (__pyx_memviewslice_is_contig((__pyx_v_src[0]), __pyx_v_order, __pyx_v_ndim) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1244
 * 
 *     if slice_is_contig(src[0], order, ndim):
 *         memcpy(result, src.data, size)             # <<<<<<<<<<<<<<
 *     else:
 *         copy_strided_to_strided(src, tmpslice, ndim, itemsize)
 */
    (void)(memcpy(__pyx_v_result, __pyx_v_src->data, __pyx_v_size));

    /* "View.MemoryView":1243
 *             tmpslice.strides[i] = 0
 * 
 *     if slice_is_contig(src[0], order, ndim):             # <<<<<<<<<<<<<<
 *         memcpy(result, src.data, size)
 *     else:
 */
    goto __pyx_L9;
  }

  /* "View.MemoryView":1246
 *         memcpy(result, src.data, size)
 *     else:
 *         copy_strided_to_strided(src, tmpslice, ndim, itemsize)             # <<<<<<<<<<<<<<
 * 
 *     return result
 */
  /*else*/ {
    copy_strided_to_strided(__pyx_v_src, __pyx_v_tmpslice, __pyx_v_ndim, __pyx_v_itemsize);
  }
  __pyx_L9:;

  /* "View.MemoryView":1248
 *         copy_strided_to_strided(src, tmpslice, ndim, itemsize)
 * 
 *     return result             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_r = __pyx_v_result;
  goto __pyx_L0;

  /* "View.MemoryView":1210
 * 
 * @cname('__pyx_memoryview_copy_data_to_temp')
 * cdef void *copy_data_to_temp(__Pyx_memviewslice *src,             # <<<<<<<<<<<<<<
 *                              __Pyx_memviewslice *tmpslice,
 *                              char order,
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.copy_data_to_temp", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = NULL;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1253
 * 
 * @cname('__pyx_memoryview_err_extents')
 * cdef int _err_extents(int i, Py_ssize_t extent1,             # <<<<<<<<<<<<<<
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %
 */

static int __pyx_memoryview_err_extents(int __pyx_v_i, Py_ssize_t __pyx_v_extent1, Py_ssize_t __pyx_v_extent2) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("_err_extents", 0);

  /* "View.MemoryView":1256
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %
 *                                                         (i, extent1, extent2))             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_err_dim')
 */
  __pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_i); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1256, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = PyInt_FromSsize_t(__pyx_v_extent1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1256, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = PyInt_FromSsize_t(__pyx_v_extent2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1256, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1256, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_GIVEREF(__pyx_t_1);
  PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_2);
  PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_2);
  __Pyx_GIVEREF(__pyx_t_3);
  PyTuple_SET_ITEM(__pyx_t_4, 2, __pyx_t_3);
  __pyx_t_1 = 0;
  __pyx_t_2 = 0;
  __pyx_t_3 = 0;

  /* "View.MemoryView":1255
 * cdef int _err_extents(int i, Py_ssize_t extent1,
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %             # <<<<<<<<<<<<<<
 *                                                         (i, extent1, extent2))
 * 
 */
  __pyx_t_3 = __Pyx_PyString_Format(__pyx_kp_s_got_differing_extents_in_dimensi, __pyx_t_4); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1255, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __pyx_t_4 = __Pyx_PyObject_CallOneArg(__pyx_builtin_ValueError, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1255, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_Raise(__pyx_t_4, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  __PYX_ERR(0, 1255, __pyx_L1_error)

  /* "View.MemoryView":1253
 * 
 * @cname('__pyx_memoryview_err_extents')
 * cdef int _err_extents(int i, Py_ssize_t extent1,             # <<<<<<<<<<<<<<
 *                              Py_ssize_t extent2) except -1 with gil:
 *     raise ValueError("got differing extents in dimension %d (got %d and %d)" %
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("View.MemoryView._err_extents", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  __Pyx_PyGILState_Release(__pyx_gilstate_save);
  #endif
  return __pyx_r;
}

/* "View.MemoryView":1259
 * 
 * @cname('__pyx_memoryview_err_dim')
 * cdef int _err_dim(object error, char *msg, int dim) except -1 with gil:             # <<<<<<<<<<<<<<
 *     raise error(msg.decode('ascii') % dim)
 * 
 */

static int __pyx_memoryview_err_dim(PyObject *__pyx_v_error, char *__pyx_v_msg, int __pyx_v_dim) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("_err_dim", 0);
  __Pyx_INCREF(__pyx_v_error);

  /* "View.MemoryView":1260
 * @cname('__pyx_memoryview_err_dim')
 * cdef int _err_dim(object error, char *msg, int dim) except -1 with gil:
 *     raise error(msg.decode('ascii') % dim)             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_err')
 */
  __pyx_t_2 = __Pyx_decode_c_string(__pyx_v_msg, 0, strlen(__pyx_v_msg), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1260, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_dim); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1260, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_3);
  __pyx_t_4 = PyUnicode_Format(__pyx_t_2, __pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1260, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_INCREF(__pyx_v_error);
  __pyx_t_3 = __pyx_v_error; __pyx_t_2 = NULL;
  if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_3))) {
    __pyx_t_2 = PyMethod_GET_SELF(__pyx_t_3);
    if (likely(__pyx_t_2)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
      __Pyx_INCREF(__pyx_t_2);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_3, function);
    }
  }
  __pyx_t_1 = (__pyx_t_2) ? __Pyx_PyObject_Call2Args(__pyx_t_3, __pyx_t_2, __pyx_t_4) : __Pyx_PyObject_CallOneArg(__pyx_t_3, __pyx_t_4);
  __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
  if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1260, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
  __Pyx_Raise(__pyx_t_1, 0, 0, 0);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __PYX_ERR(0, 1260, __pyx_L1_error)

  /* "View.MemoryView":1259
 * 
 * @cname('__pyx_memoryview_err_dim')
 * cdef int _err_dim(object error, char *msg, int dim) except -1 with gil:             # <<<<<<<<<<<<<<
 *     raise error(msg.decode('ascii') % dim)
 * 
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_AddTraceback("View.MemoryView._err_dim", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __Pyx_XDECREF(__pyx_v_error);
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  __Pyx_PyGILState_Release(__pyx_gilstate_save);
  #endif
  return __pyx_r;
}

/* "View.MemoryView":1263
 * 
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:             # <<<<<<<<<<<<<<
 *     if msg != NULL:
 *         raise error(msg.decode('ascii'))
 */

static int __pyx_memoryview_err(PyObject *__pyx_v_error, char *__pyx_v_msg) {
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  int __pyx_t_1;
  PyObject *__pyx_t_2 = NULL;
  PyObject *__pyx_t_3 = NULL;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("_err", 0);
  __Pyx_INCREF(__pyx_v_error);

  /* "View.MemoryView":1264
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:
 *     if msg != NULL:             # <<<<<<<<<<<<<<
 *         raise error(msg.decode('ascii'))
 *     else:
 */
  __pyx_t_1 = ((__pyx_v_msg != NULL) != 0);
  if (unlikely(__pyx_t_1)) {

    /* "View.MemoryView":1265
 * cdef int _err(object error, char *msg) except -1 with gil:
 *     if msg != NULL:
 *         raise error(msg.decode('ascii'))             # <<<<<<<<<<<<<<
 *     else:
 *         raise error
 */
    __pyx_t_3 = __Pyx_decode_c_string(__pyx_v_msg, 0, strlen(__pyx_v_msg), NULL, NULL, PyUnicode_DecodeASCII); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1265, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_3);
    __Pyx_INCREF(__pyx_v_error);
    __pyx_t_4 = __pyx_v_error; __pyx_t_5 = NULL;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_4))) {
      __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_4);
      if (likely(__pyx_t_5)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
        __Pyx_INCREF(__pyx_t_5);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_4, function);
      }
    }
    __pyx_t_2 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_4, __pyx_t_5, __pyx_t_3) : __Pyx_PyObject_CallOneArg(__pyx_t_4, __pyx_t_3);
    __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
    __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
    if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1265, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_2);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __Pyx_Raise(__pyx_t_2, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
    __PYX_ERR(0, 1265, __pyx_L1_error)

    /* "View.MemoryView":1264
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:
 *     if msg != NULL:             # <<<<<<<<<<<<<<
 *         raise error(msg.decode('ascii'))
 *     else:
 */
  }

  /* "View.MemoryView":1267
 *         raise error(msg.decode('ascii'))
 *     else:
 *         raise error             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_copy_contents')
 */
  /*else*/ {
    __Pyx_Raise(__pyx_v_error, 0, 0, 0);
    __PYX_ERR(0, 1267, __pyx_L1_error)
  }

  /* "View.MemoryView":1263
 * 
 * @cname('__pyx_memoryview_err')
 * cdef int _err(object error, char *msg) except -1 with gil:             # <<<<<<<<<<<<<<
 *     if msg != NULL:
 *         raise error(msg.decode('ascii'))
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_2);
  __Pyx_XDECREF(__pyx_t_3);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_AddTraceback("View.MemoryView._err", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = -1;
  __Pyx_XDECREF(__pyx_v_error);
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  __Pyx_PyGILState_Release(__pyx_gilstate_save);
  #endif
  return __pyx_r;
}

/* "View.MemoryView":1270
 * 
 * @cname('__pyx_memoryview_copy_contents')
 * cdef int memoryview_copy_contents(__Pyx_memviewslice src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice dst,
 *                                   int src_ndim, int dst_ndim,
 */

static int __pyx_memoryview_copy_contents(__Pyx_memviewslice __pyx_v_src, __Pyx_memviewslice __pyx_v_dst, int __pyx_v_src_ndim, int __pyx_v_dst_ndim, int __pyx_v_dtype_is_object) {
  void *__pyx_v_tmpdata;
  size_t __pyx_v_itemsize;
  int __pyx_v_i;
  char __pyx_v_order;
  int __pyx_v_broadcasting;
  int __pyx_v_direct_copy;
  __Pyx_memviewslice __pyx_v_tmp;
  int __pyx_v_ndim;
  int __pyx_r;
  Py_ssize_t __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;
  int __pyx_t_4;
  int __pyx_t_5;
  int __pyx_t_6;
  void *__pyx_t_7;
  int __pyx_t_8;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;

  /* "View.MemoryView":1278
 *     Check for overlapping memory and verify the shapes.
 *     """
 *     cdef void *tmpdata = NULL             # <<<<<<<<<<<<<<
 *     cdef size_t itemsize = src.memview.view.itemsize
 *     cdef int i
 */
  __pyx_v_tmpdata = NULL;

  /* "View.MemoryView":1279
 *     """
 *     cdef void *tmpdata = NULL
 *     cdef size_t itemsize = src.memview.view.itemsize             # <<<<<<<<<<<<<<
 *     cdef int i
 *     cdef char order = get_best_order(&src, src_ndim)
 */
  __pyx_t_1 = __pyx_v_src.memview->view.itemsize;
  __pyx_v_itemsize = __pyx_t_1;

  /* "View.MemoryView":1281
 *     cdef size_t itemsize = src.memview.view.itemsize
 *     cdef int i
 *     cdef char order = get_best_order(&src, src_ndim)             # <<<<<<<<<<<<<<
 *     cdef bint broadcasting = False
 *     cdef bint direct_copy = False
 */
  __pyx_v_order = __pyx_get_best_slice_order((&__pyx_v_src), __pyx_v_src_ndim);

  /* "View.MemoryView":1282
 *     cdef int i
 *     cdef char order = get_best_order(&src, src_ndim)
 *     cdef bint broadcasting = False             # <<<<<<<<<<<<<<
 *     cdef bint direct_copy = False
 *     cdef __Pyx_memviewslice tmp
 */
  __pyx_v_broadcasting = 0;

  /* "View.MemoryView":1283
 *     cdef char order = get_best_order(&src, src_ndim)
 *     cdef bint broadcasting = False
 *     cdef bint direct_copy = False             # <<<<<<<<<<<<<<
 *     cdef __Pyx_memviewslice tmp
 * 
 */
  __pyx_v_direct_copy = 0;

  /* "View.MemoryView":1286
 *     cdef __Pyx_memviewslice tmp
 * 
 *     if src_ndim < dst_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:
 */
  __pyx_t_2 = ((__pyx_v_src_ndim < __pyx_v_dst_ndim) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1287
 * 
 *     if src_ndim < dst_ndim:
 *         broadcast_leading(&src, src_ndim, dst_ndim)             # <<<<<<<<<<<<<<
 *     elif dst_ndim < src_ndim:
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 */
    __pyx_memoryview_broadcast_leading((&__pyx_v_src), __pyx_v_src_ndim, __pyx_v_dst_ndim);

    /* "View.MemoryView":1286
 *     cdef __Pyx_memviewslice tmp
 * 
 *     if src_ndim < dst_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1288
 *     if src_ndim < dst_ndim:
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 * 
 */
  __pyx_t_2 = ((__pyx_v_dst_ndim < __pyx_v_src_ndim) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1289
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:
 *         broadcast_leading(&dst, dst_ndim, src_ndim)             # <<<<<<<<<<<<<<
 * 
 *     cdef int ndim = max(src_ndim, dst_ndim)
 */
    __pyx_memoryview_broadcast_leading((&__pyx_v_dst), __pyx_v_dst_ndim, __pyx_v_src_ndim);

    /* "View.MemoryView":1288
 *     if src_ndim < dst_ndim:
 *         broadcast_leading(&src, src_ndim, dst_ndim)
 *     elif dst_ndim < src_ndim:             # <<<<<<<<<<<<<<
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 * 
 */
  }
  __pyx_L3:;

  /* "View.MemoryView":1291
 *         broadcast_leading(&dst, dst_ndim, src_ndim)
 * 
 *     cdef int ndim = max(src_ndim, dst_ndim)             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim):
 */
  __pyx_t_3 = __pyx_v_dst_ndim;
  __pyx_t_4 = __pyx_v_src_ndim;
  if (((__pyx_t_3 > __pyx_t_4) != 0)) {
    __pyx_t_5 = __pyx_t_3;
  } else {
    __pyx_t_5 = __pyx_t_4;
  }
  __pyx_v_ndim = __pyx_t_5;

  /* "View.MemoryView":1293
 *     cdef int ndim = max(src_ndim, dst_ndim)
 * 
 *     for i in range(ndim):             # <<<<<<<<<<<<<<
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:
 */
  __pyx_t_5 = __pyx_v_ndim;
  __pyx_t_3 = __pyx_t_5;
  for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
    __pyx_v_i = __pyx_t_4;

    /* "View.MemoryView":1294
 * 
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:             # <<<<<<<<<<<<<<
 *             if src.shape[i] == 1:
 *                 broadcasting = True
 */
    __pyx_t_2 = (((__pyx_v_src.shape[__pyx_v_i]) != (__pyx_v_dst.shape[__pyx_v_i])) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1295
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:             # <<<<<<<<<<<<<<
 *                 broadcasting = True
 *                 src.strides[i] = 0
 */
      __pyx_t_2 = (((__pyx_v_src.shape[__pyx_v_i]) == 1) != 0);
      if (__pyx_t_2) {

        /* "View.MemoryView":1296
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:
 *                 broadcasting = True             # <<<<<<<<<<<<<<
 *                 src.strides[i] = 0
 *             else:
 */
        __pyx_v_broadcasting = 1;

        /* "View.MemoryView":1297
 *             if src.shape[i] == 1:
 *                 broadcasting = True
 *                 src.strides[i] = 0             # <<<<<<<<<<<<<<
 *             else:
 *                 _err_extents(i, dst.shape[i], src.shape[i])
 */
        (__pyx_v_src.strides[__pyx_v_i]) = 0;

        /* "View.MemoryView":1295
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:
 *             if src.shape[i] == 1:             # <<<<<<<<<<<<<<
 *                 broadcasting = True
 *                 src.strides[i] = 0
 */
        goto __pyx_L7;
      }

      /* "View.MemoryView":1299
 *                 src.strides[i] = 0
 *             else:
 *                 _err_extents(i, dst.shape[i], src.shape[i])             # <<<<<<<<<<<<<<
 * 
 *         if src.suboffsets[i] >= 0:
 */
      /*else*/ {
        __pyx_t_6 = __pyx_memoryview_err_extents(__pyx_v_i, (__pyx_v_dst.shape[__pyx_v_i]), (__pyx_v_src.shape[__pyx_v_i])); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(0, 1299, __pyx_L1_error)
      }
      __pyx_L7:;

      /* "View.MemoryView":1294
 * 
 *     for i in range(ndim):
 *         if src.shape[i] != dst.shape[i]:             # <<<<<<<<<<<<<<
 *             if src.shape[i] == 1:
 *                 broadcasting = True
 */
    }

    /* "View.MemoryView":1301
 *                 _err_extents(i, dst.shape[i], src.shape[i])
 * 
 *         if src.suboffsets[i] >= 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 */
    __pyx_t_2 = (((__pyx_v_src.suboffsets[__pyx_v_i]) >= 0) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1302
 * 
 *         if src.suboffsets[i] >= 0:
 *             _err_dim(ValueError, "Dimension %d is not direct", i)             # <<<<<<<<<<<<<<
 * 
 *     if slices_overlap(&src, &dst, ndim, itemsize):
 */
      __pyx_t_6 = __pyx_memoryview_err_dim(__pyx_builtin_ValueError, ((char *)"Dimension %d is not direct"), __pyx_v_i); if (unlikely(__pyx_t_6 == ((int)-1))) __PYX_ERR(0, 1302, __pyx_L1_error)

      /* "View.MemoryView":1301
 *                 _err_extents(i, dst.shape[i], src.shape[i])
 * 
 *         if src.suboffsets[i] >= 0:             # <<<<<<<<<<<<<<
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 */
    }
  }

  /* "View.MemoryView":1304
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 *     if slices_overlap(&src, &dst, ndim, itemsize):             # <<<<<<<<<<<<<<
 * 
 *         if not slice_is_contig(src, order, ndim):
 */
  __pyx_t_2 = (__pyx_slices_overlap((&__pyx_v_src), (&__pyx_v_dst), __pyx_v_ndim, __pyx_v_itemsize) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1306
 *     if slices_overlap(&src, &dst, ndim, itemsize):
 * 
 *         if not slice_is_contig(src, order, ndim):             # <<<<<<<<<<<<<<
 *             order = get_best_order(&dst, ndim)
 * 
 */
    __pyx_t_2 = ((!(__pyx_memviewslice_is_contig(__pyx_v_src, __pyx_v_order, __pyx_v_ndim) != 0)) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1307
 * 
 *         if not slice_is_contig(src, order, ndim):
 *             order = get_best_order(&dst, ndim)             # <<<<<<<<<<<<<<
 * 
 *         tmpdata = copy_data_to_temp(&src, &tmp, order, ndim)
 */
      __pyx_v_order = __pyx_get_best_slice_order((&__pyx_v_dst), __pyx_v_ndim);

      /* "View.MemoryView":1306
 *     if slices_overlap(&src, &dst, ndim, itemsize):
 * 
 *         if not slice_is_contig(src, order, ndim):             # <<<<<<<<<<<<<<
 *             order = get_best_order(&dst, ndim)
 * 
 */
    }

    /* "View.MemoryView":1309
 *             order = get_best_order(&dst, ndim)
 * 
 *         tmpdata = copy_data_to_temp(&src, &tmp, order, ndim)             # <<<<<<<<<<<<<<
 *         src = tmp
 * 
 */
    __pyx_t_7 = __pyx_memoryview_copy_data_to_temp((&__pyx_v_src), (&__pyx_v_tmp), __pyx_v_order, __pyx_v_ndim); if (unlikely(__pyx_t_7 == ((void *)NULL))) __PYX_ERR(0, 1309, __pyx_L1_error)
    __pyx_v_tmpdata = __pyx_t_7;

    /* "View.MemoryView":1310
 * 
 *         tmpdata = copy_data_to_temp(&src, &tmp, order, ndim)
 *         src = tmp             # <<<<<<<<<<<<<<
 * 
 *     if not broadcasting:
 */
    __pyx_v_src = __pyx_v_tmp;

    /* "View.MemoryView":1304
 *             _err_dim(ValueError, "Dimension %d is not direct", i)
 * 
 *     if slices_overlap(&src, &dst, ndim, itemsize):             # <<<<<<<<<<<<<<
 * 
 *         if not slice_is_contig(src, order, ndim):
 */
  }

  /* "View.MemoryView":1312
 *         src = tmp
 * 
 *     if not broadcasting:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = ((!(__pyx_v_broadcasting != 0)) != 0);
  if (__pyx_t_2) {

    /* "View.MemoryView":1315
 * 
 * 
 *         if slice_is_contig(src, 'C', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):
 */
    __pyx_t_2 = (__pyx_memviewslice_is_contig(__pyx_v_src, 'C', __pyx_v_ndim) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1316
 * 
 *         if slice_is_contig(src, 'C', ndim):
 *             direct_copy = slice_is_contig(dst, 'C', ndim)             # <<<<<<<<<<<<<<
 *         elif slice_is_contig(src, 'F', ndim):
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 */
      __pyx_v_direct_copy = __pyx_memviewslice_is_contig(__pyx_v_dst, 'C', __pyx_v_ndim);

      /* "View.MemoryView":1315
 * 
 * 
 *         if slice_is_contig(src, 'C', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):
 */
      goto __pyx_L12;
    }

    /* "View.MemoryView":1317
 *         if slice_is_contig(src, 'C', ndim):
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 */
    __pyx_t_2 = (__pyx_memviewslice_is_contig(__pyx_v_src, 'F', __pyx_v_ndim) != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1318
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):
 *             direct_copy = slice_is_contig(dst, 'F', ndim)             # <<<<<<<<<<<<<<
 * 
 *         if direct_copy:
 */
      __pyx_v_direct_copy = __pyx_memviewslice_is_contig(__pyx_v_dst, 'F', __pyx_v_ndim);

      /* "View.MemoryView":1317
 *         if slice_is_contig(src, 'C', ndim):
 *             direct_copy = slice_is_contig(dst, 'C', ndim)
 *         elif slice_is_contig(src, 'F', ndim):             # <<<<<<<<<<<<<<
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 */
    }
    __pyx_L12:;

    /* "View.MemoryView":1320
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 *         if direct_copy:             # <<<<<<<<<<<<<<
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 */
    __pyx_t_2 = (__pyx_v_direct_copy != 0);
    if (__pyx_t_2) {

      /* "View.MemoryView":1322
 *         if direct_copy:
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 */
      __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0);

      /* "View.MemoryView":1323
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))             # <<<<<<<<<<<<<<
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)
 */
      (void)(memcpy(__pyx_v_dst.data, __pyx_v_src.data, __pyx_memoryview_slice_get_size((&__pyx_v_src), __pyx_v_ndim)));

      /* "View.MemoryView":1324
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)             # <<<<<<<<<<<<<<
 *             free(tmpdata)
 *             return 0
 */
      __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 1);

      /* "View.MemoryView":1325
 *             memcpy(dst.data, src.data, slice_get_size(&src, ndim))
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)             # <<<<<<<<<<<<<<
 *             return 0
 * 
 */
      free(__pyx_v_tmpdata);

      /* "View.MemoryView":1326
 *             refcount_copying(&dst, dtype_is_object, ndim, True)
 *             free(tmpdata)
 *             return 0             # <<<<<<<<<<<<<<
 * 
 *     if order == 'F' == get_best_order(&dst, ndim):
 */
      __pyx_r = 0;
      goto __pyx_L0;

      /* "View.MemoryView":1320
 *             direct_copy = slice_is_contig(dst, 'F', ndim)
 * 
 *         if direct_copy:             # <<<<<<<<<<<<<<
 * 
 *             refcount_copying(&dst, dtype_is_object, ndim, False)
 */
    }

    /* "View.MemoryView":1312
 *         src = tmp
 * 
 *     if not broadcasting:             # <<<<<<<<<<<<<<
 * 
 * 
 */
  }

  /* "View.MemoryView":1328
 *             return 0
 * 
 *     if order == 'F' == get_best_order(&dst, ndim):             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_2 = (__pyx_v_order == 'F');
  if (__pyx_t_2) {
    __pyx_t_2 = ('F' == __pyx_get_best_slice_order((&__pyx_v_dst), __pyx_v_ndim));
  }
  __pyx_t_8 = (__pyx_t_2 != 0);
  if (__pyx_t_8) {

    /* "View.MemoryView":1331
 * 
 * 
 *         transpose_memslice(&src)             # <<<<<<<<<<<<<<
 *         transpose_memslice(&dst)
 * 
 */
    __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_src)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(0, 1331, __pyx_L1_error)

    /* "View.MemoryView":1332
 * 
 *         transpose_memslice(&src)
 *         transpose_memslice(&dst)             # <<<<<<<<<<<<<<
 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
 */
    __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_dst)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(0, 1332, __pyx_L1_error)

    /* "View.MemoryView":1328
 *             return 0
 * 
 *     if order == 'F' == get_best_order(&dst, ndim):             # <<<<<<<<<<<<<<
 * 
 * 
 */
  }

  /* "View.MemoryView":1334
 *         transpose_memslice(&dst)
 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
 *     copy_strided_to_strided(&src, &dst, ndim, itemsize)
 *     refcount_copying(&dst, dtype_is_object, ndim, True)
 */
  __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0);

  /* "View.MemoryView":1335
 * 
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
 *     copy_strided_to_strided(&src, &dst, ndim, itemsize)             # <<<<<<<<<<<<<<
 *     refcount_copying(&dst, dtype_is_object, ndim, True)
 * 
 */
  copy_strided_to_strided((&__pyx_v_src), (&__pyx_v_dst), __pyx_v_ndim, __pyx_v_itemsize);

  /* "View.MemoryView":1336
 *     refcount_copying(&dst, dtype_is_object, ndim, False)
 *     copy_strided_to_strided(&src, &dst, ndim, itemsize)
 *     refcount_copying(&dst, dtype_is_object, ndim, True)             # <<<<<<<<<<<<<<
 * 
 *     free(tmpdata)
 */
  __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 1);

  /* "View.MemoryView":1338
 *     refcount_copying(&dst, dtype_is_object, ndim, True)
 * 
 *     free(tmpdata)             # <<<<<<<<<<<<<<
 *     return 0
 * 
 */
  free(__pyx_v_tmpdata);

  /* "View.MemoryView":1339
 * 
 *     free(tmpdata)
 *     return 0             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_broadcast_leading')
 */
  __pyx_r = 0;
  goto __pyx_L0;

  /* "View.MemoryView":1270
 * 
 * @cname('__pyx_memoryview_copy_contents')
 * cdef int memoryview_copy_contents(__Pyx_memviewslice src,             # <<<<<<<<<<<<<<
 *                                   __Pyx_memviewslice dst,
 *                                   int src_ndim, int dst_ndim,
 */

  /* function exit code */
  __pyx_L1_error:;
  {
    #ifdef WITH_THREAD
    PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
    #endif
    __Pyx_AddTraceback("View.MemoryView.memoryview_copy_contents", __pyx_clineno, __pyx_lineno, __pyx_filename);
    #ifdef WITH_THREAD
    __Pyx_PyGILState_Release(__pyx_gilstate_save);
    #endif
  }
  __pyx_r = -1;
  __pyx_L0:;
  return __pyx_r;
}

/* "View.MemoryView":1342
 * 
 * @cname('__pyx_memoryview_broadcast_leading')
 * cdef void broadcast_leading(__Pyx_memviewslice *mslice,             # <<<<<<<<<<<<<<
 *                             int ndim,
 *                             int ndim_other) nogil:
 */

static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *__pyx_v_mslice, int __pyx_v_ndim, int __pyx_v_ndim_other) {
  int __pyx_v_i;
  int __pyx_v_offset;
  int __pyx_t_1;
  int __pyx_t_2;
  int __pyx_t_3;

  /* "View.MemoryView":1346
 *                             int ndim_other) nogil:
 *     cdef int i
 *     cdef int offset = ndim_other - ndim             # <<<<<<<<<<<<<<
 * 
 *     for i in range(ndim - 1, -1, -1):
 */
  __pyx_v_offset = (__pyx_v_ndim_other - __pyx_v_ndim);

  /* "View.MemoryView":1348
 *     cdef int offset = ndim_other - ndim
 * 
 *     for i in range(ndim - 1, -1, -1):             # <<<<<<<<<<<<<<
 *         mslice.shape[i + offset] = mslice.shape[i]
 *         mslice.strides[i + offset] = mslice.strides[i]
 */
  for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1; __pyx_t_1-=1) {
    __pyx_v_i = __pyx_t_1;

    /* "View.MemoryView":1349
 * 
 *     for i in range(ndim - 1, -1, -1):
 *         mslice.shape[i + offset] = mslice.shape[i]             # <<<<<<<<<<<<<<
 *         mslice.strides[i + offset] = mslice.strides[i]
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]
 */
    (__pyx_v_mslice->shape[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->shape[__pyx_v_i]);

    /* "View.MemoryView":1350
 *     for i in range(ndim - 1, -1, -1):
 *         mslice.shape[i + offset] = mslice.shape[i]
 *         mslice.strides[i + offset] = mslice.strides[i]             # <<<<<<<<<<<<<<
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]
 * 
 */
    (__pyx_v_mslice->strides[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->strides[__pyx_v_i]);

    /* "View.MemoryView":1351
 *         mslice.shape[i + offset] = mslice.shape[i]
 *         mslice.strides[i + offset] = mslice.strides[i]
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]             # <<<<<<<<<<<<<<
 * 
 *     for i in range(offset):
 */
    (__pyx_v_mslice->suboffsets[(__pyx_v_i + __pyx_v_offset)]) = (__pyx_v_mslice->suboffsets[__pyx_v_i]);
  }

  /* "View.MemoryView":1353
 *         mslice.suboffsets[i + offset] = mslice.suboffsets[i]
 * 
 *     for i in range(offset):             # <<<<<<<<<<<<<<
 *         mslice.shape[i] = 1
 *         mslice.strides[i] = mslice.strides[0]
 */
  __pyx_t_1 = __pyx_v_offset;
  __pyx_t_2 = __pyx_t_1;
  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
    __pyx_v_i = __pyx_t_3;

    /* "View.MemoryView":1354
 * 
 *     for i in range(offset):
 *         mslice.shape[i] = 1             # <<<<<<<<<<<<<<
 *         mslice.strides[i] = mslice.strides[0]
 *         mslice.suboffsets[i] = -1
 */
    (__pyx_v_mslice->shape[__pyx_v_i]) = 1;

    /* "View.MemoryView":1355
 *     for i in range(offset):
 *         mslice.shape[i] = 1
 *         mslice.strides[i] = mslice.strides[0]             # <<<<<<<<<<<<<<
 *         mslice.suboffsets[i] = -1
 * 
 */
    (__pyx_v_mslice->strides[__pyx_v_i]) = (__pyx_v_mslice->strides[0]);

    /* "View.MemoryView":1356
 *         mslice.shape[i] = 1
 *         mslice.strides[i] = mslice.strides[0]
 *         mslice.suboffsets[i] = -1             # <<<<<<<<<<<<<<
 * 
 * 
 */
    (__pyx_v_mslice->suboffsets[__pyx_v_i]) = -1L;
  }

  /* "View.MemoryView":1342
 * 
 * @cname('__pyx_memoryview_broadcast_leading')
 * cdef void broadcast_leading(__Pyx_memviewslice *mslice,             # <<<<<<<<<<<<<<
 *                             int ndim,
 *                             int ndim_other) nogil:
 */

  /* function exit code */
}

/* "View.MemoryView":1364
 * 
 * @cname('__pyx_memoryview_refcount_copying')
 * cdef void refcount_copying(__Pyx_memviewslice *dst, bint dtype_is_object,             # <<<<<<<<<<<<<<
 *                            int ndim, bint inc) nogil:
 * 
 */

static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *__pyx_v_dst, int __pyx_v_dtype_is_object, int __pyx_v_ndim, int __pyx_v_inc) {
  int __pyx_t_1;

  /* "View.MemoryView":1368
 * 
 * 
 *     if dtype_is_object:             # <<<<<<<<<<<<<<
 *         refcount_objects_in_slice_with_gil(dst.data, dst.shape,
 *                                            dst.strides, ndim, inc)
 */
  __pyx_t_1 = (__pyx_v_dtype_is_object != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1369
 * 
 *     if dtype_is_object:
 *         refcount_objects_in_slice_with_gil(dst.data, dst.shape,             # <<<<<<<<<<<<<<
 *                                            dst.strides, ndim, inc)
 * 
 */
    __pyx_memoryview_refcount_objects_in_slice_with_gil(__pyx_v_dst->data, __pyx_v_dst->shape, __pyx_v_dst->strides, __pyx_v_ndim, __pyx_v_inc);

    /* "View.MemoryView":1368
 * 
 * 
 *     if dtype_is_object:             # <<<<<<<<<<<<<<
 *         refcount_objects_in_slice_with_gil(dst.data, dst.shape,
 *                                            dst.strides, ndim, inc)
 */
  }

  /* "View.MemoryView":1364
 * 
 * @cname('__pyx_memoryview_refcount_copying')
 * cdef void refcount_copying(__Pyx_memviewslice *dst, bint dtype_is_object,             # <<<<<<<<<<<<<<
 *                            int ndim, bint inc) nogil:
 * 
 */

  /* function exit code */
}

/* "View.MemoryView":1373
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice_with_gil')
 * cdef void refcount_objects_in_slice_with_gil(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                              Py_ssize_t *strides, int ndim,
 *                                              bint inc) with gil:
 */

static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, int __pyx_v_inc) {
  __Pyx_RefNannyDeclarations
  #ifdef WITH_THREAD
  PyGILState_STATE __pyx_gilstate_save = __Pyx_PyGILState_Ensure();
  #endif
  __Pyx_RefNannySetupContext("refcount_objects_in_slice_with_gil", 0);

  /* "View.MemoryView":1376
 *                                              Py_ssize_t *strides, int ndim,
 *                                              bint inc) with gil:
 *     refcount_objects_in_slice(data, shape, strides, ndim, inc)             # <<<<<<<<<<<<<<
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice')
 */
  __pyx_memoryview_refcount_objects_in_slice(__pyx_v_data, __pyx_v_shape, __pyx_v_strides, __pyx_v_ndim, __pyx_v_inc);

  /* "View.MemoryView":1373
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice_with_gil')
 * cdef void refcount_objects_in_slice_with_gil(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                              Py_ssize_t *strides, int ndim,
 *                                              bint inc) with gil:
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  #ifdef WITH_THREAD
  __Pyx_PyGILState_Release(__pyx_gilstate_save);
  #endif
}

/* "View.MemoryView":1379
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice')
 * cdef void refcount_objects_in_slice(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                     Py_ssize_t *strides, int ndim, bint inc):
 *     cdef Py_ssize_t i
 */

static void __pyx_memoryview_refcount_objects_in_slice(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, int __pyx_v_inc) {
  CYTHON_UNUSED Py_ssize_t __pyx_v_i;
  __Pyx_RefNannyDeclarations
  Py_ssize_t __pyx_t_1;
  Py_ssize_t __pyx_t_2;
  Py_ssize_t __pyx_t_3;
  int __pyx_t_4;
  __Pyx_RefNannySetupContext("refcount_objects_in_slice", 0);

  /* "View.MemoryView":1383
 *     cdef Py_ssize_t i
 * 
 *     for i in range(shape[0]):             # <<<<<<<<<<<<<<
 *         if ndim == 1:
 *             if inc:
 */
  __pyx_t_1 = (__pyx_v_shape[0]);
  __pyx_t_2 = __pyx_t_1;
  for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
    __pyx_v_i = __pyx_t_3;

    /* "View.MemoryView":1384
 * 
 *     for i in range(shape[0]):
 *         if ndim == 1:             # <<<<<<<<<<<<<<
 *             if inc:
 *                 Py_INCREF((<PyObject **> data)[0])
 */
    __pyx_t_4 = ((__pyx_v_ndim == 1) != 0);
    if (__pyx_t_4) {

      /* "View.MemoryView":1385
 *     for i in range(shape[0]):
 *         if ndim == 1:
 *             if inc:             # <<<<<<<<<<<<<<
 *                 Py_INCREF((<PyObject **> data)[0])
 *             else:
 */
      __pyx_t_4 = (__pyx_v_inc != 0);
      if (__pyx_t_4) {

        /* "View.MemoryView":1386
 *         if ndim == 1:
 *             if inc:
 *                 Py_INCREF((<PyObject **> data)[0])             # <<<<<<<<<<<<<<
 *             else:
 *                 Py_DECREF((<PyObject **> data)[0])
 */
        Py_INCREF((((PyObject **)__pyx_v_data)[0]));

        /* "View.MemoryView":1385
 *     for i in range(shape[0]):
 *         if ndim == 1:
 *             if inc:             # <<<<<<<<<<<<<<
 *                 Py_INCREF((<PyObject **> data)[0])
 *             else:
 */
        goto __pyx_L6;
      }

      /* "View.MemoryView":1388
 *                 Py_INCREF((<PyObject **> data)[0])
 *             else:
 *                 Py_DECREF((<PyObject **> data)[0])             # <<<<<<<<<<<<<<
 *         else:
 *             refcount_objects_in_slice(data, shape + 1, strides + 1,
 */
      /*else*/ {
        Py_DECREF((((PyObject **)__pyx_v_data)[0]));
      }
      __pyx_L6:;

      /* "View.MemoryView":1384
 * 
 *     for i in range(shape[0]):
 *         if ndim == 1:             # <<<<<<<<<<<<<<
 *             if inc:
 *                 Py_INCREF((<PyObject **> data)[0])
 */
      goto __pyx_L5;
    }

    /* "View.MemoryView":1390
 *                 Py_DECREF((<PyObject **> data)[0])
 *         else:
 *             refcount_objects_in_slice(data, shape + 1, strides + 1,             # <<<<<<<<<<<<<<
 *                                       ndim - 1, inc)
 * 
 */
    /*else*/ {

      /* "View.MemoryView":1391
 *         else:
 *             refcount_objects_in_slice(data, shape + 1, strides + 1,
 *                                       ndim - 1, inc)             # <<<<<<<<<<<<<<
 * 
 *         data += strides[0]
 */
      __pyx_memoryview_refcount_objects_in_slice(__pyx_v_data, (__pyx_v_shape + 1), (__pyx_v_strides + 1), (__pyx_v_ndim - 1), __pyx_v_inc);
    }
    __pyx_L5:;

    /* "View.MemoryView":1393
 *                                       ndim - 1, inc)
 * 
 *         data += strides[0]             # <<<<<<<<<<<<<<
 * 
 * 
 */
    __pyx_v_data = (__pyx_v_data + (__pyx_v_strides[0]));
  }

  /* "View.MemoryView":1379
 * 
 * @cname('__pyx_memoryview_refcount_objects_in_slice')
 * cdef void refcount_objects_in_slice(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                                     Py_ssize_t *strides, int ndim, bint inc):
 *     cdef Py_ssize_t i
 */

  /* function exit code */
  __Pyx_RefNannyFinishContext();
}

/* "View.MemoryView":1399
 * 
 * @cname('__pyx_memoryview_slice_assign_scalar')
 * cdef void slice_assign_scalar(__Pyx_memviewslice *dst, int ndim,             # <<<<<<<<<<<<<<
 *                               size_t itemsize, void *item,
 *                               bint dtype_is_object) nogil:
 */

static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize, void *__pyx_v_item, int __pyx_v_dtype_is_object) {

  /* "View.MemoryView":1402
 *                               size_t itemsize, void *item,
 *                               bint dtype_is_object) nogil:
 *     refcount_copying(dst, dtype_is_object, ndim, False)             # <<<<<<<<<<<<<<
 *     _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim,
 *                          itemsize, item)
 */
  __pyx_memoryview_refcount_copying(__pyx_v_dst, __pyx_v_dtype_is_object, __pyx_v_ndim, 0);

  /* "View.MemoryView":1403
 *                               bint dtype_is_object) nogil:
 *     refcount_copying(dst, dtype_is_object, ndim, False)
 *     _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim,             # <<<<<<<<<<<<<<
 *                          itemsize, item)
 *     refcount_copying(dst, dtype_is_object, ndim, True)
 */
  __pyx_memoryview__slice_assign_scalar(__pyx_v_dst->data, __pyx_v_dst->shape, __pyx_v_dst->strides, __pyx_v_ndim, __pyx_v_itemsize, __pyx_v_item);

  /* "View.MemoryView":1405
 *     _slice_assign_scalar(dst.data, dst.shape, dst.strides, ndim,
 *                          itemsize, item)
 *     refcount_copying(dst, dtype_is_object, ndim, True)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_memoryview_refcount_copying(__pyx_v_dst, __pyx_v_dtype_is_object, __pyx_v_ndim, 1);

  /* "View.MemoryView":1399
 * 
 * @cname('__pyx_memoryview_slice_assign_scalar')
 * cdef void slice_assign_scalar(__Pyx_memviewslice *dst, int ndim,             # <<<<<<<<<<<<<<
 *                               size_t itemsize, void *item,
 *                               bint dtype_is_object) nogil:
 */

  /* function exit code */
}

/* "View.MemoryView":1409
 * 
 * @cname('__pyx_memoryview__slice_assign_scalar')
 * cdef void _slice_assign_scalar(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                               Py_ssize_t *strides, int ndim,
 *                               size_t itemsize, void *item) nogil:
 */

static void __pyx_memoryview__slice_assign_scalar(char *__pyx_v_data, Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, int __pyx_v_ndim, size_t __pyx_v_itemsize, void *__pyx_v_item) {
  CYTHON_UNUSED Py_ssize_t __pyx_v_i;
  Py_ssize_t __pyx_v_stride;
  Py_ssize_t __pyx_v_extent;
  int __pyx_t_1;
  Py_ssize_t __pyx_t_2;
  Py_ssize_t __pyx_t_3;
  Py_ssize_t __pyx_t_4;

  /* "View.MemoryView":1413
 *                               size_t itemsize, void *item) nogil:
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t stride = strides[0]             # <<<<<<<<<<<<<<
 *     cdef Py_ssize_t extent = shape[0]
 * 
 */
  __pyx_v_stride = (__pyx_v_strides[0]);

  /* "View.MemoryView":1414
 *     cdef Py_ssize_t i
 *     cdef Py_ssize_t stride = strides[0]
 *     cdef Py_ssize_t extent = shape[0]             # <<<<<<<<<<<<<<
 * 
 *     if ndim == 1:
 */
  __pyx_v_extent = (__pyx_v_shape[0]);

  /* "View.MemoryView":1416
 *     cdef Py_ssize_t extent = shape[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)
 */
  __pyx_t_1 = ((__pyx_v_ndim == 1) != 0);
  if (__pyx_t_1) {

    /* "View.MemoryView":1417
 * 
 *     if ndim == 1:
 *         for i in range(extent):             # <<<<<<<<<<<<<<
 *             memcpy(data, item, itemsize)
 *             data += stride
 */
    __pyx_t_2 = __pyx_v_extent;
    __pyx_t_3 = __pyx_t_2;
    for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
      __pyx_v_i = __pyx_t_4;

      /* "View.MemoryView":1418
 *     if ndim == 1:
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)             # <<<<<<<<<<<<<<
 *             data += stride
 *     else:
 */
      (void)(memcpy(__pyx_v_data, __pyx_v_item, __pyx_v_itemsize));

      /* "View.MemoryView":1419
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)
 *             data += stride             # <<<<<<<<<<<<<<
 *     else:
 *         for i in range(extent):
 */
      __pyx_v_data = (__pyx_v_data + __pyx_v_stride);
    }

    /* "View.MemoryView":1416
 *     cdef Py_ssize_t extent = shape[0]
 * 
 *     if ndim == 1:             # <<<<<<<<<<<<<<
 *         for i in range(extent):
 *             memcpy(data, item, itemsize)
 */
    goto __pyx_L3;
  }

  /* "View.MemoryView":1421
 *             data += stride
 *     else:
 *         for i in range(extent):             # <<<<<<<<<<<<<<
 *             _slice_assign_scalar(data, shape + 1, strides + 1,
 *                                 ndim - 1, itemsize, item)
 */
  /*else*/ {
    __pyx_t_2 = __pyx_v_extent;
    __pyx_t_3 = __pyx_t_2;
    for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
      __pyx_v_i = __pyx_t_4;

      /* "View.MemoryView":1422
 *     else:
 *         for i in range(extent):
 *             _slice_assign_scalar(data, shape + 1, strides + 1,             # <<<<<<<<<<<<<<
 *                                 ndim - 1, itemsize, item)
 *             data += stride
 */
      __pyx_memoryview__slice_assign_scalar(__pyx_v_data, (__pyx_v_shape + 1), (__pyx_v_strides + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize, __pyx_v_item);

      /* "View.MemoryView":1424
 *             _slice_assign_scalar(data, shape + 1, strides + 1,
 *                                 ndim - 1, itemsize, item)
 *             data += stride             # <<<<<<<<<<<<<<
 * 
 * 
 */
      __pyx_v_data = (__pyx_v_data + __pyx_v_stride);
    }
  }
  __pyx_L3:;

  /* "View.MemoryView":1409
 * 
 * @cname('__pyx_memoryview__slice_assign_scalar')
 * cdef void _slice_assign_scalar(char *data, Py_ssize_t *shape,             # <<<<<<<<<<<<<<
 *                               Py_ssize_t *strides, int ndim,
 *                               size_t itemsize, void *item) nogil:
 */

  /* function exit code */
}

/* "(tree fragment)":1
 * def __pyx_unpickle_Enum(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */

/* Python wrapper */
static PyObject *__pyx_pw_15View_dot_MemoryView_1__pyx_unpickle_Enum(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static PyMethodDef __pyx_mdef_15View_dot_MemoryView_1__pyx_unpickle_Enum = {"__pyx_unpickle_Enum", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_15View_dot_MemoryView_1__pyx_unpickle_Enum, METH_VARARGS|METH_KEYWORDS, 0};
static PyObject *__pyx_pw_15View_dot_MemoryView_1__pyx_unpickle_Enum(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  PyObject *__pyx_v___pyx_type = 0;
  long __pyx_v___pyx_checksum;
  PyObject *__pyx_v___pyx_state = 0;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  PyObject *__pyx_r = 0;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__pyx_unpickle_Enum (wrapper)", 0);
  {
    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_pyx_type,&__pyx_n_s_pyx_checksum,&__pyx_n_s_pyx_state,0};
    PyObject* values[3] = {0,0,0};
    if (unlikely(__pyx_kwds)) {
      Py_ssize_t kw_args;
      const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
      switch (pos_args) {
        case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
        CYTHON_FALLTHROUGH;
        case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
        CYTHON_FALLTHROUGH;
        case  1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
        CYTHON_FALLTHROUGH;
        case  0: break;
        default: goto __pyx_L5_argtuple_error;
      }
      kw_args = PyDict_Size(__pyx_kwds);
      switch (pos_args) {
        case  0:
        if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_type)) != 0)) kw_args--;
        else goto __pyx_L5_argtuple_error;
        CYTHON_FALLTHROUGH;
        case  1:
        if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_checksum)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_Enum", 1, 3, 3, 1); __PYX_ERR(0, 1, __pyx_L3_error)
        }
        CYTHON_FALLTHROUGH;
        case  2:
        if (likely((values[2] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_pyx_state)) != 0)) kw_args--;
        else {
          __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_Enum", 1, 3, 3, 2); __PYX_ERR(0, 1, __pyx_L3_error)
        }
      }
      if (unlikely(kw_args > 0)) {
        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__pyx_unpickle_Enum") < 0)) __PYX_ERR(0, 1, __pyx_L3_error)
      }
    } else if (PyTuple_GET_SIZE(__pyx_args) != 3) {
      goto __pyx_L5_argtuple_error;
    } else {
      values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
      values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
      values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
    }
    __pyx_v___pyx_type = values[0];
    __pyx_v___pyx_checksum = __Pyx_PyInt_As_long(values[1]); if (unlikely((__pyx_v___pyx_checksum == (long)-1) && PyErr_Occurred())) __PYX_ERR(0, 1, __pyx_L3_error)
    __pyx_v___pyx_state = values[2];
  }
  goto __pyx_L4_argument_unpacking_done;
  __pyx_L5_argtuple_error:;
  __Pyx_RaiseArgtupleInvalid("__pyx_unpickle_Enum", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 1, __pyx_L3_error)
  __pyx_L3_error:;
  __Pyx_AddTraceback("View.MemoryView.__pyx_unpickle_Enum", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __Pyx_RefNannyFinishContext();
  return NULL;
  __pyx_L4_argument_unpacking_done:;
  __pyx_r = __pyx_pf_15View_dot_MemoryView___pyx_unpickle_Enum(__pyx_self, __pyx_v___pyx_type, __pyx_v___pyx_checksum, __pyx_v___pyx_state);

  /* function exit code */
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

static PyObject *__pyx_pf_15View_dot_MemoryView___pyx_unpickle_Enum(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_v___pyx_PickleError = 0;
  PyObject *__pyx_v___pyx_result = 0;
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  int __pyx_t_3;
  PyObject *__pyx_t_4 = NULL;
  PyObject *__pyx_t_5 = NULL;
  PyObject *__pyx_t_6 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_unpickle_Enum", 0);

  /* "(tree fragment)":4
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0xb068931, 0x82a3537, 0x6ae9995):             # <<<<<<<<<<<<<<
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))" % __pyx_checksum)
 */
  __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_2 = (__Pyx_PySequence_ContainsTF(__pyx_t_1, __pyx_tuple__36, Py_NE)); if (unlikely(__pyx_t_2 < 0)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_3 = (__pyx_t_2 != 0);
  if (__pyx_t_3) {

    /* "(tree fragment)":5
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0xb068931, 0x82a3537, 0x6ae9995):
 *         from pickle import PickleError as __pyx_PickleError             # <<<<<<<<<<<<<<
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))" % __pyx_checksum)
 *     __pyx_result = Enum.__new__(__pyx_type)
 */
    __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_n_s_PickleError);
    __Pyx_GIVEREF(__pyx_n_s_PickleError);
    PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_PickleError);
    __pyx_t_4 = __Pyx_Import(__pyx_n_s_pickle, __pyx_t_1, 0); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_4, __pyx_n_s_PickleError); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 5, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_INCREF(__pyx_t_1);
    __pyx_v___pyx_PickleError = __pyx_t_1;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "(tree fragment)":6
 *     if __pyx_checksum not in (0xb068931, 0x82a3537, 0x6ae9995):
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))" % __pyx_checksum)             # <<<<<<<<<<<<<<
 *     __pyx_result = Enum.__new__(__pyx_type)
 *     if __pyx_state is not None:
 */
    __pyx_t_1 = __Pyx_PyInt_From_long(__pyx_v___pyx_checksum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __pyx_t_5 = __Pyx_PyString_Format(__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_3, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_5);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_INCREF(__pyx_v___pyx_PickleError);
    __pyx_t_1 = __pyx_v___pyx_PickleError; __pyx_t_6 = NULL;
    if (CYTHON_UNPACK_METHODS && unlikely(PyMethod_Check(__pyx_t_1))) {
      __pyx_t_6 = PyMethod_GET_SELF(__pyx_t_1);
      if (likely(__pyx_t_6)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
        __Pyx_INCREF(__pyx_t_6);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_1, function);
      }
    }
    __pyx_t_4 = (__pyx_t_6) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_6, __pyx_t_5) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_t_5);
    __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
    __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
    if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 6, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
    __Pyx_Raise(__pyx_t_4, 0, 0, 0);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
    __PYX_ERR(0, 6, __pyx_L1_error)

    /* "(tree fragment)":4
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0xb068931, 0x82a3537, 0x6ae9995):             # <<<<<<<<<<<<<<
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))" % __pyx_checksum)
 */
  }

  /* "(tree fragment)":7
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))" % __pyx_checksum)
 *     __pyx_result = Enum.__new__(__pyx_type)             # <<<<<<<<<<<<<<
 *     if __pyx_state is not None:
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)
 */
  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_MemviewEnum_type), __pyx_n_s_new); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 7, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_t_5 = NULL;
  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_1))) {
    __pyx_t_5 = PyMethod_GET_SELF(__pyx_t_1);
    if (likely(__pyx_t_5)) {
      PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
      __Pyx_INCREF(__pyx_t_5);
      __Pyx_INCREF(function);
      __Pyx_DECREF_SET(__pyx_t_1, function);
    }
  }
  __pyx_t_4 = (__pyx_t_5) ? __Pyx_PyObject_Call2Args(__pyx_t_1, __pyx_t_5, __pyx_v___pyx_type) : __Pyx_PyObject_CallOneArg(__pyx_t_1, __pyx_v___pyx_type);
  __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
  if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 7, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_4);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_v___pyx_result = __pyx_t_4;
  __pyx_t_4 = 0;

  /* "(tree fragment)":8
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))" % __pyx_checksum)
 *     __pyx_result = Enum.__new__(__pyx_type)
 *     if __pyx_state is not None:             # <<<<<<<<<<<<<<
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)
 *     return __pyx_result
 */
  __pyx_t_3 = (__pyx_v___pyx_state != Py_None);
  __pyx_t_2 = (__pyx_t_3 != 0);
  if (__pyx_t_2) {

    /* "(tree fragment)":9
 *     __pyx_result = Enum.__new__(__pyx_type)
 *     if __pyx_state is not None:
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)             # <<<<<<<<<<<<<<
 *     return __pyx_result
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):
 */
    if (!(likely(PyTuple_CheckExact(__pyx_v___pyx_state))||((__pyx_v___pyx_state) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "tuple", Py_TYPE(__pyx_v___pyx_state)->tp_name), 0))) __PYX_ERR(0, 9, __pyx_L1_error)
    __pyx_t_4 = __pyx_unpickle_Enum__set_state(((struct __pyx_MemviewEnum_obj *)__pyx_v___pyx_result), ((PyObject*)__pyx_v___pyx_state)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 9, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_4);
    __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;

    /* "(tree fragment)":8
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0xb068931, 0x82a3537, 0x6ae9995) = (name))" % __pyx_checksum)
 *     __pyx_result = Enum.__new__(__pyx_type)
 *     if __pyx_state is not None:             # <<<<<<<<<<<<<<
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)
 *     return __pyx_result
 */
  }

  /* "(tree fragment)":10
 *     if __pyx_state is not None:
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)
 *     return __pyx_result             # <<<<<<<<<<<<<<
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):
 *     __pyx_result.name = __pyx_state[0]
 */
  __Pyx_XDECREF(__pyx_r);
  __Pyx_INCREF(__pyx_v___pyx_result);
  __pyx_r = __pyx_v___pyx_result;
  goto __pyx_L0;

  /* "(tree fragment)":1
 * def __pyx_unpickle_Enum(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_4);
  __Pyx_XDECREF(__pyx_t_5);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_AddTraceback("View.MemoryView.__pyx_unpickle_Enum", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = NULL;
  __pyx_L0:;
  __Pyx_XDECREF(__pyx_v___pyx_PickleError);
  __Pyx_XDECREF(__pyx_v___pyx_result);
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}

/* "(tree fragment)":11
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.name = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 */

static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *__pyx_v___pyx_result, PyObject *__pyx_v___pyx_state) {
  PyObject *__pyx_r = NULL;
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_t_2;
  Py_ssize_t __pyx_t_3;
  int __pyx_t_4;
  int __pyx_t_5;
  PyObject *__pyx_t_6 = NULL;
  PyObject *__pyx_t_7 = NULL;
  PyObject *__pyx_t_8 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__pyx_unpickle_Enum__set_state", 0);

  /* "(tree fragment)":12
 *     return __pyx_result
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):
 *     __pyx_result.name = __pyx_state[0]             # <<<<<<<<<<<<<<
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 *         __pyx_result.__dict__.update(__pyx_state[1])
 */
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
    __PYX_ERR(0, 12, __pyx_L1_error)
  }
  __pyx_t_1 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 12, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_1);
  __Pyx_GOTREF(__pyx_v___pyx_result->name);
  __Pyx_DECREF(__pyx_v___pyx_result->name);
  __pyx_v___pyx_result->name = __pyx_t_1;
  __pyx_t_1 = 0;

  /* "(tree fragment)":13
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):
 *     __pyx_result.name = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):             # <<<<<<<<<<<<<<
 *         __pyx_result.__dict__.update(__pyx_state[1])
 */
  if (unlikely(__pyx_v___pyx_state == Py_None)) {
    PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
    __PYX_ERR(0, 13, __pyx_L1_error)
  }
  __pyx_t_3 = PyTuple_GET_SIZE(__pyx_v___pyx_state); if (unlikely(__pyx_t_3 == ((Py_ssize_t)-1))) __PYX_ERR(0, 13, __pyx_L1_error)
  __pyx_t_4 = ((__pyx_t_3 > 1) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_2 = __pyx_t_4;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_4 = __Pyx_HasAttr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(0, 13, __pyx_L1_error)
  __pyx_t_5 = (__pyx_t_4 != 0);
  __pyx_t_2 = __pyx_t_5;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_2) {

    /* "(tree fragment)":14
 *     __pyx_result.name = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 *         __pyx_result.__dict__.update(__pyx_state[1])             # <<<<<<<<<<<<<<
 */
    __pyx_t_6 = __Pyx_PyObject_GetAttrStr(((PyObject *)__pyx_v___pyx_result), __pyx_n_s_dict); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_7 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_update); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_7);
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (unlikely(__pyx_v___pyx_state == Py_None)) {
      PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
      __PYX_ERR(0, 14, __pyx_L1_error)
    }
    __pyx_t_6 = __Pyx_GetItemInt_Tuple(__pyx_v___pyx_state, 1, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_6);
    __pyx_t_8 = NULL;
    if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_7))) {
      __pyx_t_8 = PyMethod_GET_SELF(__pyx_t_7);
      if (likely(__pyx_t_8)) {
        PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_7);
        __Pyx_INCREF(__pyx_t_8);
        __Pyx_INCREF(function);
        __Pyx_DECREF_SET(__pyx_t_7, function);
      }
    }
    __pyx_t_1 = (__pyx_t_8) ? __Pyx_PyObject_Call2Args(__pyx_t_7, __pyx_t_8, __pyx_t_6) : __Pyx_PyObject_CallOneArg(__pyx_t_7, __pyx_t_6);
    __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
    __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
    if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 14, __pyx_L1_error)
    __Pyx_GOTREF(__pyx_t_1);
    __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

    /* "(tree fragment)":13
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):
 *     __pyx_result.name = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):             # <<<<<<<<<<<<<<
 *         __pyx_result.__dict__.update(__pyx_state[1])
 */
  }

  /* "(tree fragment)":11
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.name = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 */

  /* function exit code */
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_6);
  __Pyx_XDECREF(__pyx_t_7);
  __Pyx_XDECREF(__pyx_t_8);
  __Pyx_AddTraceback("View.MemoryView.__pyx_unpickle_Enum__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_XGIVEREF(__pyx_r);
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
}
static struct __pyx_vtabstruct_5dysgu_5graph_ClipScoper __pyx_vtable_5dysgu_5graph_ClipScoper;

static PyObject *__pyx_tp_new_5dysgu_5graph_ClipScoper(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_5dysgu_5graph_ClipScoper *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_5dysgu_5graph_ClipScoper *)o);
  p->__pyx_vtab = __pyx_vtabptr_5dysgu_5graph_ClipScoper;
  new((void*)&(p->scope_left)) std::deque<std::pair<int,int> > ();
  new((void*)&(p->scope_right)) std::deque<std::pair<int,int> > ();
  new((void*)&(p->read_minimizers_left)) MinimizerTable();
  new((void*)&(p->read_minimizers_right)) MinimizerTable();
  new((void*)&(p->clip_table_left)) robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> > ();
  new((void*)&(p->clip_table_right)) robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> > ();
  p->rds_clip = Py_None; Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_5dysgu_5graph_ClipScoper(PyObject *o) {
  struct __pyx_obj_5dysgu_5graph_ClipScoper *p = (struct __pyx_obj_5dysgu_5graph_ClipScoper *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  __Pyx_call_destructor(p->scope_left);
  __Pyx_call_destructor(p->scope_right);
  __Pyx_call_destructor(p->read_minimizers_left);
  __Pyx_call_destructor(p->read_minimizers_right);
  __Pyx_call_destructor(p->clip_table_left);
  __Pyx_call_destructor(p->clip_table_right);
  Py_CLEAR(p->rds_clip);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_5dysgu_5graph_ClipScoper(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_5dysgu_5graph_ClipScoper *p = (struct __pyx_obj_5dysgu_5graph_ClipScoper *)o;
  if (p->rds_clip) {
    e = (*v)(p->rds_clip, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_5dysgu_5graph_ClipScoper(PyObject *o) {
  PyObject* tmp;
  struct __pyx_obj_5dysgu_5graph_ClipScoper *p = (struct __pyx_obj_5dysgu_5graph_ClipScoper *)o;
  tmp = ((PyObject*)p->rds_clip);
  p->rds_clip = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyMethodDef __pyx_methods_5dysgu_5graph_ClipScoper[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_10ClipScoper_3__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_10ClipScoper_5__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static PyTypeObject __pyx_type_5dysgu_5graph_ClipScoper = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.ClipScoper", /*tp_name*/
  sizeof(struct __pyx_obj_5dysgu_5graph_ClipScoper), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_5dysgu_5graph_ClipScoper, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_5dysgu_5graph_ClipScoper, /*tp_traverse*/
  __pyx_tp_clear_5dysgu_5graph_ClipScoper, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_5dysgu_5graph_ClipScoper, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_5dysgu_5graph_10ClipScoper_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_5dysgu_5graph_ClipScoper, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_5dysgu_5graph_PairedEndScoper __pyx_vtable_5dysgu_5graph_PairedEndScoper;

static PyObject *__pyx_tp_new_5dysgu_5graph_PairedEndScoper(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_5dysgu_5graph_PairedEndScoper *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)o);
  p->__pyx_vtab = __pyx_vtabptr_5dysgu_5graph_PairedEndScoper;
  new((void*)&(p->loci)) std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> ();
  new((void*)&(p->chrom_scope)) std::vector<std::multimap<int,struct __pyx_t_5dysgu_5graph_LocalVal> > ();
  return o;
}

static void __pyx_tp_dealloc_5dysgu_5graph_PairedEndScoper(PyObject *o) {
  struct __pyx_obj_5dysgu_5graph_PairedEndScoper *p = (struct __pyx_obj_5dysgu_5graph_PairedEndScoper *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  __Pyx_call_destructor(p->loci);
  __Pyx_call_destructor(p->chrom_scope);
  (*Py_TYPE(o)->tp_free)(o);
}

static PyMethodDef __pyx_methods_5dysgu_5graph_PairedEndScoper[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_15PairedEndScoper_3__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_15PairedEndScoper_5__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static PyTypeObject __pyx_type_5dysgu_5graph_PairedEndScoper = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.PairedEndScoper", /*tp_name*/
  sizeof(struct __pyx_obj_5dysgu_5graph_PairedEndScoper), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_5dysgu_5graph_PairedEndScoper, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  0, /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_5dysgu_5graph_PairedEndScoper, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_5dysgu_5graph_15PairedEndScoper_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_5dysgu_5graph_PairedEndScoper, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_5dysgu_5graph_TemplateEdges __pyx_vtable_5dysgu_5graph_TemplateEdges;

static PyObject *__pyx_tp_new_5dysgu_5graph_TemplateEdges(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_5dysgu_5graph_TemplateEdges *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_5dysgu_5graph_TemplateEdges *)o);
  p->__pyx_vtab = __pyx_vtabptr_5dysgu_5graph_TemplateEdges;
  new((void*)&(p->templates_s)) std::unordered_map<std::string,std::vector<int> > ();
  return o;
}

static void __pyx_tp_dealloc_5dysgu_5graph_TemplateEdges(PyObject *o) {
  struct __pyx_obj_5dysgu_5graph_TemplateEdges *p = (struct __pyx_obj_5dysgu_5graph_TemplateEdges *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  __Pyx_call_destructor(p->templates_s);
  (*Py_TYPE(o)->tp_free)(o);
}

static PyObject *__pyx_getprop_5dysgu_5graph_13TemplateEdges_templates_s(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_13TemplateEdges_11templates_s_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_13TemplateEdges_templates_s(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_13TemplateEdges_11templates_s_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyMethodDef __pyx_methods_5dysgu_5graph_TemplateEdges[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_13TemplateEdges_3__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_13TemplateEdges_5__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_5dysgu_5graph_TemplateEdges[] = {
  {(char *)"templates_s", __pyx_getprop_5dysgu_5graph_13TemplateEdges_templates_s, __pyx_setprop_5dysgu_5graph_13TemplateEdges_templates_s, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type_5dysgu_5graph_TemplateEdges = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.TemplateEdges", /*tp_name*/
  sizeof(struct __pyx_obj_5dysgu_5graph_TemplateEdges), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_5dysgu_5graph_TemplateEdges, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  0, /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_5dysgu_5graph_TemplateEdges, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_5dysgu_5graph_TemplateEdges, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_5dysgu_5graph_13TemplateEdges_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_5dysgu_5graph_TemplateEdges, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};

static PyObject *__pyx_tp_new_5dysgu_5graph_NodeName(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  return o;
}

static void __pyx_tp_dealloc_5dysgu_5graph_NodeName(PyObject *o) {
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  (*Py_TYPE(o)->tp_free)(o);
}

static PyObject *__pyx_getprop_5dysgu_5graph_8NodeName_hash_name(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_8NodeName_9hash_name_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_8NodeName_hash_name(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_8NodeName_9hash_name_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_5graph_8NodeName_tell(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_8NodeName_4tell_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_8NodeName_tell(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_8NodeName_4tell_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_5graph_8NodeName_pos(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_8NodeName_3pos_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_8NodeName_pos(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_8NodeName_3pos_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_5graph_8NodeName_cigar_index(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_8NodeName_11cigar_index_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_8NodeName_cigar_index(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_8NodeName_11cigar_index_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_5graph_8NodeName_event_pos(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_8NodeName_9event_pos_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_8NodeName_event_pos(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_8NodeName_9event_pos_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_5graph_8NodeName_flag(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_8NodeName_4flag_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_8NodeName_flag(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_8NodeName_4flag_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyObject *__pyx_getprop_5dysgu_5graph_8NodeName_chrom(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_5dysgu_5graph_8NodeName_5chrom_1__get__(o);
}

static int __pyx_setprop_5dysgu_5graph_8NodeName_chrom(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
  if (v) {
    return __pyx_pw_5dysgu_5graph_8NodeName_5chrom_3__set__(o, v);
  }
  else {
    PyErr_SetString(PyExc_NotImplementedError, "__del__");
    return -1;
  }
}

static PyMethodDef __pyx_methods_5dysgu_5graph_NodeName[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_8NodeName_3__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_8NodeName_5__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_5dysgu_5graph_NodeName[] = {
  {(char *)"hash_name", __pyx_getprop_5dysgu_5graph_8NodeName_hash_name, __pyx_setprop_5dysgu_5graph_8NodeName_hash_name, (char *)0, 0},
  {(char *)"tell", __pyx_getprop_5dysgu_5graph_8NodeName_tell, __pyx_setprop_5dysgu_5graph_8NodeName_tell, (char *)0, 0},
  {(char *)"pos", __pyx_getprop_5dysgu_5graph_8NodeName_pos, __pyx_setprop_5dysgu_5graph_8NodeName_pos, (char *)0, 0},
  {(char *)"cigar_index", __pyx_getprop_5dysgu_5graph_8NodeName_cigar_index, __pyx_setprop_5dysgu_5graph_8NodeName_cigar_index, (char *)0, 0},
  {(char *)"event_pos", __pyx_getprop_5dysgu_5graph_8NodeName_event_pos, __pyx_setprop_5dysgu_5graph_8NodeName_event_pos, (char *)0, 0},
  {(char *)"flag", __pyx_getprop_5dysgu_5graph_8NodeName_flag, __pyx_setprop_5dysgu_5graph_8NodeName_flag, (char *)0, 0},
  {(char *)"chrom", __pyx_getprop_5dysgu_5graph_8NodeName_chrom, __pyx_setprop_5dysgu_5graph_8NodeName_chrom, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type_5dysgu_5graph_NodeName = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.NodeName", /*tp_name*/
  sizeof(struct __pyx_obj_5dysgu_5graph_NodeName), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_5dysgu_5graph_NodeName, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  0, /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_5dysgu_5graph_NodeName, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_5dysgu_5graph_NodeName, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_5dysgu_5graph_8NodeName_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_5dysgu_5graph_NodeName, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_5dysgu_5graph_NodeToName __pyx_vtable_5dysgu_5graph_NodeToName;

static PyObject *__pyx_tp_new_5dysgu_5graph_NodeToName(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_5dysgu_5graph_NodeToName *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_5dysgu_5graph_NodeToName *)o);
  p->__pyx_vtab = __pyx_vtabptr_5dysgu_5graph_NodeToName;
  new((void*)&(p->h)) std::vector<uint64_t> ();
  new((void*)&(p->f)) std::vector<uint16_t> ();
  new((void*)&(p->p)) std::vector<uint32_t> ();
  new((void*)&(p->c)) std::vector<uint16_t> ();
  new((void*)&(p->t)) std::vector<uint64_t> ();
  new((void*)&(p->cigar_index)) std::vector<int32_t> ();
  new((void*)&(p->event_pos)) std::vector<uint32_t> ();
  if (unlikely(__pyx_pw_5dysgu_5graph_10NodeToName_1__cinit__(o, __pyx_empty_tuple, NULL) < 0)) goto bad;
  return o;
  bad:
  Py_DECREF(o); o = 0;
  return NULL;
}

static void __pyx_tp_dealloc_5dysgu_5graph_NodeToName(PyObject *o) {
  struct __pyx_obj_5dysgu_5graph_NodeToName *p = (struct __pyx_obj_5dysgu_5graph_NodeToName *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  __Pyx_call_destructor(p->h);
  __Pyx_call_destructor(p->f);
  __Pyx_call_destructor(p->p);
  __Pyx_call_destructor(p->c);
  __Pyx_call_destructor(p->t);
  __Pyx_call_destructor(p->cigar_index);
  __Pyx_call_destructor(p->event_pos);
  (*Py_TYPE(o)->tp_free)(o);
}
static PyObject *__pyx_sq_item_5dysgu_5graph_NodeToName(PyObject *o, Py_ssize_t i) {
  PyObject *r;
  PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
  r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
  Py_DECREF(x);
  return r;
}

static PyMethodDef __pyx_methods_5dysgu_5graph_NodeToName[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_10NodeToName_5__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_5dysgu_5graph_10NodeToName_7__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_NodeToName = {
  0, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_5dysgu_5graph_NodeToName, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_NodeToName = {
  0, /*mp_length*/
  __pyx_pw_5dysgu_5graph_10NodeToName_3__getitem__, /*mp_subscript*/
  0, /*mp_ass_subscript*/
};

static PyTypeObject __pyx_type_5dysgu_5graph_NodeToName = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.NodeToName", /*tp_name*/
  sizeof(struct __pyx_obj_5dysgu_5graph_NodeToName), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_5dysgu_5graph_NodeToName, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_NodeToName, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_NodeToName, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  0, /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_5dysgu_5graph_NodeToName, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_5dysgu_5graph_NodeToName, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_array __pyx_vtable_array;

static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_array_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_array_obj *)o);
  p->__pyx_vtab = __pyx_vtabptr_array;
  p->mode = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->_format = ((PyObject*)Py_None); Py_INCREF(Py_None);
  if (unlikely(__pyx_array___cinit__(o, a, k) < 0)) goto bad;
  return o;
  bad:
  Py_DECREF(o); o = 0;
  return NULL;
}

static void __pyx_tp_dealloc_array(PyObject *o) {
  struct __pyx_array_obj *p = (struct __pyx_array_obj *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1);
    __pyx_array___dealloc__(o);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->mode);
  Py_CLEAR(p->_format);
  (*Py_TYPE(o)->tp_free)(o);
}
static PyObject *__pyx_sq_item_array(PyObject *o, Py_ssize_t i) {
  PyObject *r;
  PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
  r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
  Py_DECREF(x);
  return r;
}

static int __pyx_mp_ass_subscript_array(PyObject *o, PyObject *i, PyObject *v) {
  if (v) {
    return __pyx_array___setitem__(o, i, v);
  }
  else {
    PyErr_Format(PyExc_NotImplementedError,
      "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name);
    return -1;
  }
}

static PyObject *__pyx_tp_getattro_array(PyObject *o, PyObject *n) {
  PyObject *v = __Pyx_PyObject_GenericGetAttr(o, n);
  if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) {
    PyErr_Clear();
    v = __pyx_array___getattr__(o, n);
  }
  return v;
}

static PyObject *__pyx_getprop___pyx_array_memview(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_5array_7memview_1__get__(o);
}

static PyMethodDef __pyx_methods_array[] = {
  {"__getattr__", (PyCFunction)__pyx_array___getattr__, METH_O|METH_COEXIST, 0},
  {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_array_1__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_array_3__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_array[] = {
  {(char *)"memview", __pyx_getprop___pyx_array_memview, 0, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_array = {
  __pyx_array___len__, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_array, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_array = {
  __pyx_array___len__, /*mp_length*/
  __pyx_array___getitem__, /*mp_subscript*/
  __pyx_mp_ass_subscript_array, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_array = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  __pyx_array_getbuffer, /*bf_getbuffer*/
  0, /*bf_releasebuffer*/
};

static PyTypeObject __pyx_type___pyx_array = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.array", /*tp_name*/
  sizeof(struct __pyx_array_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_array, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_array, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_array, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  __pyx_tp_getattro_array, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_array, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  0, /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_array, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_array, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_array, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};

static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_MemviewEnum_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_MemviewEnum_obj *)o);
  p->name = Py_None; Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_Enum(PyObject *o) {
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  Py_CLEAR(p->name);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_Enum(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  if (p->name) {
    e = (*v)(p->name, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_Enum(PyObject *o) {
  PyObject* tmp;
  struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o;
  tmp = ((PyObject*)p->name);
  p->name = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyMethodDef __pyx_methods_Enum[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_MemviewEnum_1__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_MemviewEnum_3__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static PyTypeObject __pyx_type___pyx_MemviewEnum = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.Enum", /*tp_name*/
  sizeof(struct __pyx_MemviewEnum_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_Enum, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  __pyx_MemviewEnum___repr__, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_Enum, /*tp_traverse*/
  __pyx_tp_clear_Enum, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_Enum, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_MemviewEnum___init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_Enum, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct_memoryview __pyx_vtable_memoryview;

static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_memoryview_obj *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_memoryview_obj *)o);
  p->__pyx_vtab = __pyx_vtabptr_memoryview;
  p->obj = Py_None; Py_INCREF(Py_None);
  p->_size = Py_None; Py_INCREF(Py_None);
  p->_array_interface = Py_None; Py_INCREF(Py_None);
  p->view.obj = NULL;
  if (unlikely(__pyx_memoryview___cinit__(o, a, k) < 0)) goto bad;
  return o;
  bad:
  Py_DECREF(o); o = 0;
  return NULL;
}

static void __pyx_tp_dealloc_memoryview(PyObject *o) {
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1);
    __pyx_memoryview___dealloc__(o);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->obj);
  Py_CLEAR(p->_size);
  Py_CLEAR(p->_array_interface);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_memoryview(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  if (p->obj) {
    e = (*v)(p->obj, a); if (e) return e;
  }
  if (p->_size) {
    e = (*v)(p->_size, a); if (e) return e;
  }
  if (p->_array_interface) {
    e = (*v)(p->_array_interface, a); if (e) return e;
  }
  if (p->view.obj) {
    e = (*v)(p->view.obj, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_memoryview(PyObject *o) {
  PyObject* tmp;
  struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o;
  tmp = ((PyObject*)p->obj);
  p->obj = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->_size);
  p->_size = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->_array_interface);
  p->_array_interface = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  Py_CLEAR(p->view.obj);
  return 0;
}
static PyObject *__pyx_sq_item_memoryview(PyObject *o, Py_ssize_t i) {
  PyObject *r;
  PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
  r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
  Py_DECREF(x);
  return r;
}

static int __pyx_mp_ass_subscript_memoryview(PyObject *o, PyObject *i, PyObject *v) {
  if (v) {
    return __pyx_memoryview___setitem__(o, i, v);
  }
  else {
    PyErr_Format(PyExc_NotImplementedError,
      "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name);
    return -1;
  }
}

static PyObject *__pyx_getprop___pyx_memoryview_T(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_1T_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_base(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_4base_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_shape(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_5shape_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_strides(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_7strides_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_suboffsets(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_10suboffsets_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_ndim(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_4ndim_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_itemsize(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_8itemsize_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_nbytes(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_6nbytes_1__get__(o);
}

static PyObject *__pyx_getprop___pyx_memoryview_size(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_10memoryview_4size_1__get__(o);
}

static PyMethodDef __pyx_methods_memoryview[] = {
  {"is_c_contig", (PyCFunction)__pyx_memoryview_is_c_contig, METH_NOARGS, 0},
  {"is_f_contig", (PyCFunction)__pyx_memoryview_is_f_contig, METH_NOARGS, 0},
  {"copy", (PyCFunction)__pyx_memoryview_copy, METH_NOARGS, 0},
  {"copy_fortran", (PyCFunction)__pyx_memoryview_copy_fortran, METH_NOARGS, 0},
  {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_memoryview_1__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_memoryview_3__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets_memoryview[] = {
  {(char *)"T", __pyx_getprop___pyx_memoryview_T, 0, (char *)0, 0},
  {(char *)"base", __pyx_getprop___pyx_memoryview_base, 0, (char *)0, 0},
  {(char *)"shape", __pyx_getprop___pyx_memoryview_shape, 0, (char *)0, 0},
  {(char *)"strides", __pyx_getprop___pyx_memoryview_strides, 0, (char *)0, 0},
  {(char *)"suboffsets", __pyx_getprop___pyx_memoryview_suboffsets, 0, (char *)0, 0},
  {(char *)"ndim", __pyx_getprop___pyx_memoryview_ndim, 0, (char *)0, 0},
  {(char *)"itemsize", __pyx_getprop___pyx_memoryview_itemsize, 0, (char *)0, 0},
  {(char *)"nbytes", __pyx_getprop___pyx_memoryview_nbytes, 0, (char *)0, 0},
  {(char *)"size", __pyx_getprop___pyx_memoryview_size, 0, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PySequenceMethods __pyx_tp_as_sequence_memoryview = {
  __pyx_memoryview___len__, /*sq_length*/
  0, /*sq_concat*/
  0, /*sq_repeat*/
  __pyx_sq_item_memoryview, /*sq_item*/
  0, /*sq_slice*/
  0, /*sq_ass_item*/
  0, /*sq_ass_slice*/
  0, /*sq_contains*/
  0, /*sq_inplace_concat*/
  0, /*sq_inplace_repeat*/
};

static PyMappingMethods __pyx_tp_as_mapping_memoryview = {
  __pyx_memoryview___len__, /*mp_length*/
  __pyx_memoryview___getitem__, /*mp_subscript*/
  __pyx_mp_ass_subscript_memoryview, /*mp_ass_subscript*/
};

static PyBufferProcs __pyx_tp_as_buffer_memoryview = {
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getreadbuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getwritebuffer*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getsegcount*/
  #endif
  #if PY_MAJOR_VERSION < 3
  0, /*bf_getcharbuffer*/
  #endif
  __pyx_memoryview_getbuffer, /*bf_getbuffer*/
  0, /*bf_releasebuffer*/
};

static PyTypeObject __pyx_type___pyx_memoryview = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph.memoryview", /*tp_name*/
  sizeof(struct __pyx_memoryview_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_memoryview, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  __pyx_memoryview___repr__, /*tp_repr*/
  0, /*tp_as_number*/
  &__pyx_tp_as_sequence_memoryview, /*tp_as_sequence*/
  &__pyx_tp_as_mapping_memoryview, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  __pyx_memoryview___str__, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  &__pyx_tp_as_buffer_memoryview, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  0, /*tp_doc*/
  __pyx_tp_traverse_memoryview, /*tp_traverse*/
  __pyx_tp_clear_memoryview, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_memoryview, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets_memoryview, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_memoryview, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};
static struct __pyx_vtabstruct__memoryviewslice __pyx_vtable__memoryviewslice;

static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k) {
  struct __pyx_memoryviewslice_obj *p;
  PyObject *o = __pyx_tp_new_memoryview(t, a, k);
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_memoryviewslice_obj *)o);
  p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_memoryview*)__pyx_vtabptr__memoryviewslice;
  p->from_object = Py_None; Py_INCREF(Py_None);
  p->from_slice.memview = NULL;
  return o;
}

static void __pyx_tp_dealloc__memoryviewslice(PyObject *o) {
  struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1);
    __pyx_memoryviewslice___dealloc__(o);
    __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->from_object);
  PyObject_GC_Track(o);
  __pyx_tp_dealloc_memoryview(o);
}

static int __pyx_tp_traverse__memoryviewslice(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o;
  e = __pyx_tp_traverse_memoryview(o, v, a); if (e) return e;
  if (p->from_object) {
    e = (*v)(p->from_object, a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear__memoryviewslice(PyObject *o) {
  PyObject* tmp;
  struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o;
  __pyx_tp_clear_memoryview(o);
  tmp = ((PyObject*)p->from_object);
  p->from_object = Py_None; Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  __PYX_XDEC_MEMVIEW(&p->from_slice, 1);
  return 0;
}

static PyObject *__pyx_getprop___pyx_memoryviewslice_base(PyObject *o, CYTHON_UNUSED void *x) {
  return __pyx_pw_15View_dot_MemoryView_16_memoryviewslice_4base_1__get__(o);
}

static PyMethodDef __pyx_methods__memoryviewslice[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_memoryviewslice_1__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_memoryviewslice_3__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static struct PyGetSetDef __pyx_getsets__memoryviewslice[] = {
  {(char *)"base", __pyx_getprop___pyx_memoryviewslice_base, 0, (char *)0, 0},
  {0, 0, 0, 0, 0}
};

static PyTypeObject __pyx_type___pyx_memoryviewslice = {
  PyVarObject_HEAD_INIT(0, 0)
  "dysgu.graph._memoryviewslice", /*tp_name*/
  sizeof(struct __pyx_memoryviewslice_obj), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc__memoryviewslice, /*tp_dealloc*/
  #if PY_VERSION_HEX < 0x030800b4
  0, /*tp_print*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4
  0, /*tp_vectorcall_offset*/
  #endif
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY
  __pyx_memoryview___repr__, /*tp_repr*/
  #else
  0, /*tp_repr*/
  #endif
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  #if CYTHON_COMPILING_IN_PYPY
  __pyx_memoryview___str__, /*tp_str*/
  #else
  0, /*tp_str*/
  #endif
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  "Internal class for passing memoryview slices to Python", /*tp_doc*/
  __pyx_tp_traverse__memoryviewslice, /*tp_traverse*/
  __pyx_tp_clear__memoryviewslice, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods__memoryviewslice, /*tp_methods*/
  0, /*tp_members*/
  __pyx_getsets__memoryviewslice, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  0, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new__memoryviewslice, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
  0, /*tp_vectorcall*/
  #endif
  #if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
  0, /*tp_print*/
  #endif
  #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
  0, /*tp_pypy_flags*/
  #endif
};

static PyMethodDef __pyx_methods[] = {
  {"construct_graph", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_1construct_graph, METH_VARARGS|METH_KEYWORDS, 0},
  {"break_large_component", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_3break_large_component, METH_VARARGS|METH_KEYWORDS, 0},
  {"proc_component", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5dysgu_5graph_5proc_component, METH_VARARGS|METH_KEYWORDS, 0},
  {0, 0, 0, 0}
};

#if PY_MAJOR_VERSION >= 3
#if CYTHON_PEP489_MULTI_PHASE_INIT
static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/
static int __pyx_pymod_exec_graph(PyObject* module); /*proto*/
static PyModuleDef_Slot __pyx_moduledef_slots[] = {
  {Py_mod_create, (void*)__pyx_pymod_create},
  {Py_mod_exec, (void*)__pyx_pymod_exec_graph},
  {0, NULL}
};
#endif

static struct PyModuleDef __pyx_moduledef = {
    PyModuleDef_HEAD_INIT,
    "graph",
    0, /* m_doc */
  #if CYTHON_PEP489_MULTI_PHASE_INIT
    0, /* m_size */
  #else
    -1, /* m_size */
  #endif
    __pyx_methods /* m_methods */,
  #if CYTHON_PEP489_MULTI_PHASE_INIT
    __pyx_moduledef_slots, /* m_slots */
  #else
    NULL, /* m_reload */
  #endif
    NULL, /* m_traverse */
    NULL, /* m_clear */
    NULL /* m_free */
};
#endif
#ifndef CYTHON_SMALL_CODE
#if defined(__clang__)
    #define CYTHON_SMALL_CODE
#elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3))
    #define CYTHON_SMALL_CODE __attribute__((cold))
#else
    #define CYTHON_SMALL_CODE
#endif
#endif

static __Pyx_StringTabEntry __pyx_string_tab[] = {
  {&__pyx_n_s_ASCII, __pyx_k_ASCII, sizeof(__pyx_k_ASCII), 0, 0, 1, 1},
  {&__pyx_kp_u_Added, __pyx_k_Added, sizeof(__pyx_k_Added), 0, 1, 0, 0},
  {&__pyx_n_s_BadClipCounter, __pyx_k_BadClipCounter, sizeof(__pyx_k_BadClipCounter), 0, 0, 1, 1},
  {&__pyx_kp_s_Buffer_view_does_not_expose_stri, __pyx_k_Buffer_view_does_not_expose_stri, sizeof(__pyx_k_Buffer_view_does_not_expose_stri), 0, 0, 1, 0},
  {&__pyx_kp_u_Building_graph_with_clustering_b, __pyx_k_Building_graph_with_clustering_b, sizeof(__pyx_k_Building_graph_with_clustering_b), 0, 1, 0, 0},
  {&__pyx_kp_s_Can_only_create_a_buffer_that_is, __pyx_k_Can_only_create_a_buffer_that_is, sizeof(__pyx_k_Can_only_create_a_buffer_that_is), 0, 0, 1, 0},
  {&__pyx_kp_s_Cannot_assign_to_read_only_memor, __pyx_k_Cannot_assign_to_read_only_memor, sizeof(__pyx_k_Cannot_assign_to_read_only_memor), 0, 0, 1, 0},
  {&__pyx_kp_s_Cannot_create_writable_memory_vi, __pyx_k_Cannot_create_writable_memory_vi, sizeof(__pyx_k_Cannot_create_writable_memory_vi), 0, 0, 1, 0},
  {&__pyx_kp_s_Cannot_index_with_type_s, __pyx_k_Cannot_index_with_type_s, sizeof(__pyx_k_Cannot_index_with_type_s), 0, 0, 1, 0},
  {&__pyx_n_s_ClipScoper, __pyx_k_ClipScoper, sizeof(__pyx_k_ClipScoper), 0, 0, 1, 1},
  {&__pyx_n_u_D, __pyx_k_D, sizeof(__pyx_k_D), 0, 1, 0, 1},
  {&__pyx_n_u_DEL, __pyx_k_DEL, sizeof(__pyx_k_DEL), 0, 1, 0, 1},
  {&__pyx_n_s_Ellipsis, __pyx_k_Ellipsis, sizeof(__pyx_k_Ellipsis), 0, 0, 1, 1},
  {&__pyx_kp_s_Empty_shape_tuple_for_cython_arr, __pyx_k_Empty_shape_tuple_for_cython_arr, sizeof(__pyx_k_Empty_shape_tuple_for_cython_arr), 0, 0, 1, 0},
  {&__pyx_n_s_G, __pyx_k_G, sizeof(__pyx_k_G), 0, 0, 1, 1},
  {&__pyx_n_u_I, __pyx_k_I, sizeof(__pyx_k_I), 0, 1, 0, 1},
  {&__pyx_n_u_INS, __pyx_k_INS, sizeof(__pyx_k_INS), 0, 1, 0, 1},
  {&__pyx_n_s_ImportError, __pyx_k_ImportError, sizeof(__pyx_k_ImportError), 0, 0, 1, 1},
  {&__pyx_kp_s_Incompatible_checksums_0x_x_vs_0, __pyx_k_Incompatible_checksums_0x_x_vs_0, sizeof(__pyx_k_Incompatible_checksums_0x_x_vs_0), 0, 0, 1, 0},
  {&__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_2, __pyx_k_Incompatible_checksums_0x_x_vs_0_2, sizeof(__pyx_k_Incompatible_checksums_0x_x_vs_0_2), 0, 0, 1, 0},
  {&__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_3, __pyx_k_Incompatible_checksums_0x_x_vs_0_3, sizeof(__pyx_k_Incompatible_checksums_0x_x_vs_0_3), 0, 0, 1, 0},
  {&__pyx_n_s_IndexError, __pyx_k_IndexError, sizeof(__pyx_k_IndexError), 0, 0, 1, 1},
  {&__pyx_kp_s_Indirect_dimensions_not_supporte, __pyx_k_Indirect_dimensions_not_supporte, sizeof(__pyx_k_Indirect_dimensions_not_supporte), 0, 0, 1, 0},
  {&__pyx_kp_s_Invalid_mode_expected_c_or_fortr, __pyx_k_Invalid_mode_expected_c_or_fortr, sizeof(__pyx_k_Invalid_mode_expected_c_or_fortr), 0, 0, 1, 0},
  {&__pyx_kp_s_Invalid_shape_in_axis_d_d, __pyx_k_Invalid_shape_in_axis_d_d, sizeof(__pyx_k_Invalid_shape_in_axis_d_d), 0, 0, 1, 0},
  {&__pyx_n_u_L, __pyx_k_L, sizeof(__pyx_k_L), 0, 1, 0, 1},
  {&__pyx_kp_u_M_X, __pyx_k_M_X, sizeof(__pyx_k_M_X), 0, 1, 0, 0},
  {&__pyx_n_s_MemoryError, __pyx_k_MemoryError, sizeof(__pyx_k_MemoryError), 0, 0, 1, 1},
  {&__pyx_kp_s_MemoryView_of_r_at_0x_x, __pyx_k_MemoryView_of_r_at_0x_x, sizeof(__pyx_k_MemoryView_of_r_at_0x_x), 0, 0, 1, 0},
  {&__pyx_kp_s_MemoryView_of_r_object, __pyx_k_MemoryView_of_r_object, sizeof(__pyx_k_MemoryView_of_r_object), 0, 0, 1, 0},
  {&__pyx_n_s_NodeName, __pyx_k_NodeName, sizeof(__pyx_k_NodeName), 0, 0, 1, 1},
  {&__pyx_n_s_NodeToName, __pyx_k_NodeToName, sizeof(__pyx_k_NodeToName), 0, 0, 1, 1},
  {&__pyx_n_b_O, __pyx_k_O, sizeof(__pyx_k_O), 0, 0, 0, 1},
  {&__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_k_Out_of_bounds_on_buffer_access_a, sizeof(__pyx_k_Out_of_bounds_on_buffer_access_a), 0, 0, 1, 0},
  {&__pyx_n_s_PairedEndScoper, __pyx_k_PairedEndScoper, sizeof(__pyx_k_PairedEndScoper), 0, 0, 1, 1},
  {&__pyx_n_s_PickleError, __pyx_k_PickleError, sizeof(__pyx_k_PickleError), 0, 0, 1, 1},
  {&__pyx_n_u_SA, __pyx_k_SA, sizeof(__pyx_k_SA), 0, 1, 0, 1},
  {&__pyx_n_u_SH, __pyx_k_SH, sizeof(__pyx_k_SH), 0, 1, 0, 1},
  {&__pyx_n_s_SiteAdder, __pyx_k_SiteAdder, sizeof(__pyx_k_SiteAdder), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder___contains, __pyx_k_SiteAdder___contains, sizeof(__pyx_k_SiteAdder___contains), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder___getitem, __pyx_k_SiteAdder___getitem, sizeof(__pyx_k_SiteAdder___getitem), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder___init, __pyx_k_SiteAdder___init, sizeof(__pyx_k_SiteAdder___init), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder___init___locals_lambda, __pyx_k_SiteAdder___init___locals_lambda, sizeof(__pyx_k_SiteAdder___init___locals_lambda), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder_add_any_sites, __pyx_k_SiteAdder_add_any_sites, sizeof(__pyx_k_SiteAdder_add_any_sites), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder_add_to_scope, __pyx_k_SiteAdder_add_to_scope, sizeof(__pyx_k_SiteAdder_add_to_scope), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder_add_to_scope_locals_la, __pyx_k_SiteAdder_add_to_scope_locals_la, sizeof(__pyx_k_SiteAdder_add_to_scope_locals_la), 0, 0, 1, 1},
  {&__pyx_n_s_SiteAdder_find_nearest_site, __pyx_k_SiteAdder_find_nearest_site, sizeof(__pyx_k_SiteAdder_find_nearest_site), 0, 0, 1, 1},
  {&__pyx_n_s_SortedList, __pyx_k_SortedList, sizeof(__pyx_k_SortedList), 0, 0, 1, 1},
  {&__pyx_n_s_TemplateEdges, __pyx_k_TemplateEdges, sizeof(__pyx_k_TemplateEdges), 0, 0, 1, 1},
  {&__pyx_n_s_TypeError, __pyx_k_TypeError, sizeof(__pyx_k_TypeError), 0, 0, 1, 1},
  {&__pyx_kp_s_Unable_to_convert_item_to_object, __pyx_k_Unable_to_convert_item_to_object, sizeof(__pyx_k_Unable_to_convert_item_to_object), 0, 0, 1, 0},
  {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1},
  {&__pyx_n_s_View_MemoryView, __pyx_k_View_MemoryView, sizeof(__pyx_k_View_MemoryView), 0, 0, 1, 1},
  {&__pyx_kp_u__10, __pyx_k__10, sizeof(__pyx_k__10), 0, 1, 0, 0},
  {&__pyx_kp_u__11, __pyx_k__11, sizeof(__pyx_k__11), 0, 1, 0, 0},
  {&__pyx_kp_u__13, __pyx_k__13, sizeof(__pyx_k__13), 0, 1, 0, 0},
  {&__pyx_kp_u__7, __pyx_k__7, sizeof(__pyx_k__7), 0, 1, 0, 0},
  {&__pyx_kp_u__8, __pyx_k__8, sizeof(__pyx_k__8), 0, 1, 0, 0},
  {&__pyx_kp_u__9, __pyx_k__9, sizeof(__pyx_k__9), 0, 1, 0, 0},
  {&__pyx_n_s_add, __pyx_k_add, sizeof(__pyx_k_add), 0, 0, 1, 1},
  {&__pyx_n_s_addEdge, __pyx_k_addEdge, sizeof(__pyx_k_addEdge), 0, 0, 1, 1},
  {&__pyx_n_s_addNode, __pyx_k_addNode, sizeof(__pyx_k_addNode), 0, 0, 1, 1},
  {&__pyx_n_s_add_any_sites, __pyx_k_add_any_sites, sizeof(__pyx_k_add_any_sites), 0, 0, 1, 1},
  {&__pyx_n_s_add_to_buffer, __pyx_k_add_to_buffer, sizeof(__pyx_k_add_to_buffer), 0, 0, 1, 1},
  {&__pyx_n_s_add_to_scope, __pyx_k_add_to_scope, sizeof(__pyx_k_add_to_scope), 0, 0, 1, 1},
  {&__pyx_n_s_alignments_from_sa_tag_locals_la, __pyx_k_alignments_from_sa_tag_locals_la, sizeof(__pyx_k_alignments_from_sa_tag_locals_la), 0, 0, 1, 1},
  {&__pyx_n_s_allocate_buffer, __pyx_k_allocate_buffer, sizeof(__pyx_k_allocate_buffer), 0, 0, 1, 1},
  {&__pyx_n_s_append, __pyx_k_append, sizeof(__pyx_k_append), 0, 0, 1, 1},
  {&__pyx_n_s_array, __pyx_k_array, sizeof(__pyx_k_array), 0, 0, 1, 1},
  {&__pyx_n_s_base, __pyx_k_base, sizeof(__pyx_k_base), 0, 0, 1, 1},
  {&__pyx_n_s_bisect_left, __pyx_k_bisect_left, sizeof(__pyx_k_bisect_left), 0, 0, 1, 1},
  {&__pyx_n_s_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 0, 1, 1},
  {&__pyx_n_u_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 1, 0, 1},
  {&__pyx_n_s_chrom, __pyx_k_chrom, sizeof(__pyx_k_chrom), 0, 0, 1, 1},
  {&__pyx_n_s_chrom2, __pyx_k_chrom2, sizeof(__pyx_k_chrom2), 0, 0, 1, 1},
  {&__pyx_n_s_cigar_index, __pyx_k_cigar_index, sizeof(__pyx_k_cigar_index), 0, 0, 1, 1},
  {&__pyx_n_s_cigartuples, __pyx_k_cigartuples, sizeof(__pyx_k_cigartuples), 0, 0, 1, 1},
  {&__pyx_n_s_class, __pyx_k_class, sizeof(__pyx_k_class), 0, 0, 1, 1},
  {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1},
  {&__pyx_n_s_clip_l, __pyx_k_clip_l, sizeof(__pyx_k_clip_l), 0, 0, 1, 1},
  {&__pyx_n_s_clip_length, __pyx_k_clip_length, sizeof(__pyx_k_clip_length), 0, 0, 1, 1},
  {&__pyx_n_s_clst_dist, __pyx_k_clst_dist, sizeof(__pyx_k_clst_dist), 0, 0, 1, 1},
  {&__pyx_n_s_cluster_dist, __pyx_k_cluster_dist, sizeof(__pyx_k_cluster_dist), 0, 0, 1, 1},
  {&__pyx_n_s_clustering_dist, __pyx_k_clustering_dist, sizeof(__pyx_k_clustering_dist), 0, 0, 1, 1},
  {&__pyx_n_s_collections, __pyx_k_collections, sizeof(__pyx_k_collections), 0, 0, 1, 1},
  {&__pyx_n_s_component, __pyx_k_component, sizeof(__pyx_k_component), 0, 0, 1, 1},
  {&__pyx_n_s_contains, __pyx_k_contains, sizeof(__pyx_k_contains), 0, 0, 1, 1},
  {&__pyx_n_s_contigs, __pyx_k_contigs, sizeof(__pyx_k_contigs), 0, 0, 1, 1},
  {&__pyx_kp_s_contiguous_and_direct, __pyx_k_contiguous_and_direct, sizeof(__pyx_k_contiguous_and_direct), 0, 0, 1, 0},
  {&__pyx_kp_s_contiguous_and_indirect, __pyx_k_contiguous_and_indirect, sizeof(__pyx_k_contiguous_and_indirect), 0, 0, 1, 0},
  {&__pyx_n_s_count, __pyx_k_count, sizeof(__pyx_k_count), 0, 0, 1, 1},
  {&__pyx_n_s_current_chrom, __pyx_k_current_chrom, sizeof(__pyx_k_current_chrom), 0, 0, 1, 1},
  {&__pyx_n_s_current_index, __pyx_k_current_index, sizeof(__pyx_k_current_index), 0, 0, 1, 1},
  {&__pyx_kp_u_d_A_Z_1, __pyx_k_d_A_Z_1, sizeof(__pyx_k_d_A_Z_1), 0, 1, 0, 0},
  {&__pyx_n_s_debug, __pyx_k_debug, sizeof(__pyx_k_debug), 0, 0, 1, 1},
  {&__pyx_n_s_defaultdict, __pyx_k_defaultdict, sizeof(__pyx_k_defaultdict), 0, 0, 1, 1},
  {&__pyx_n_s_deque, __pyx_k_deque, sizeof(__pyx_k_deque), 0, 0, 1, 1},
  {&__pyx_n_s_dict, __pyx_k_dict, sizeof(__pyx_k_dict), 0, 0, 1, 1},
  {&__pyx_n_s_doc, __pyx_k_doc, sizeof(__pyx_k_doc), 0, 0, 1, 1},
  {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1},
  {&__pyx_n_s_dtype_is_object, __pyx_k_dtype_is_object, sizeof(__pyx_k_dtype_is_object), 0, 0, 1, 1},
  {&__pyx_n_s_dysgu_extra_metrics, __pyx_k_dysgu_extra_metrics, sizeof(__pyx_k_dysgu_extra_metrics), 0, 0, 1, 1},
  {&__pyx_n_s_dysgu_graph, __pyx_k_dysgu_graph, sizeof(__pyx_k_dysgu_graph), 0, 0, 1, 1},
  {&__pyx_kp_s_dysgu_graph_pyx, __pyx_k_dysgu_graph_pyx, sizeof(__pyx_k_dysgu_graph_pyx), 0, 0, 1, 0},
  {&__pyx_n_s_dysgu_io_funcs, __pyx_k_dysgu_io_funcs, sizeof(__pyx_k_dysgu_io_funcs), 0, 0, 1, 1},
  {&__pyx_n_s_dysgu_map_set_utils, __pyx_k_dysgu_map_set_utils, sizeof(__pyx_k_dysgu_map_set_utils), 0, 0, 1, 1},
  {&__pyx_n_s_echo, __pyx_k_echo, sizeof(__pyx_k_echo), 0, 0, 1, 1},
  {&__pyx_n_s_encode, __pyx_k_encode, sizeof(__pyx_k_encode), 0, 0, 1, 1},
  {&__pyx_n_s_encoding, __pyx_k_encoding, sizeof(__pyx_k_encoding), 0, 0, 1, 1},
  {&__pyx_n_s_end, __pyx_k_end, sizeof(__pyx_k_end), 0, 0, 1, 1},
  {&__pyx_n_s_enumerate, __pyx_k_enumerate, sizeof(__pyx_k_enumerate), 0, 0, 1, 1},
  {&__pyx_n_s_error, __pyx_k_error, sizeof(__pyx_k_error), 0, 0, 1, 1},
  {&__pyx_n_s_event_pos, __pyx_k_event_pos, sizeof(__pyx_k_event_pos), 0, 0, 1, 1},
  {&__pyx_n_s_extend, __pyx_k_extend, sizeof(__pyx_k_extend), 0, 0, 1, 1},
  {&__pyx_n_s_f, __pyx_k_f, sizeof(__pyx_k_f), 0, 0, 1, 1},
  {&__pyx_n_s_file_index, __pyx_k_file_index, sizeof(__pyx_k_file_index), 0, 0, 1, 1},
  {&__pyx_n_s_find_nearest_site, __pyx_k_find_nearest_site, sizeof(__pyx_k_find_nearest_site), 0, 0, 1, 1},
  {&__pyx_n_s_findall, __pyx_k_findall, sizeof(__pyx_k_findall), 0, 0, 1, 1},
  {&__pyx_n_s_flag, __pyx_k_flag, sizeof(__pyx_k_flag), 0, 0, 1, 1},
  {&__pyx_n_s_flags, __pyx_k_flags, sizeof(__pyx_k_flags), 0, 0, 1, 1},
  {&__pyx_n_s_format, __pyx_k_format, sizeof(__pyx_k_format), 0, 0, 1, 1},
  {&__pyx_n_s_fortran, __pyx_k_fortran, sizeof(__pyx_k_fortran), 0, 0, 1, 1},
  {&__pyx_n_u_fortran, __pyx_k_fortran, sizeof(__pyx_k_fortran), 0, 1, 0, 1},
  {&__pyx_n_s_fromiter, __pyx_k_fromiter, sizeof(__pyx_k_fromiter), 0, 0, 1, 1},
  {&__pyx_n_s_genome_scanner, __pyx_k_genome_scanner, sizeof(__pyx_k_genome_scanner), 0, 0, 1, 1},
  {&__pyx_n_s_get_tag, __pyx_k_get_tag, sizeof(__pyx_k_get_tag), 0, 0, 1, 1},
  {&__pyx_n_s_getitem, __pyx_k_getitem, sizeof(__pyx_k_getitem), 0, 0, 1, 1},
  {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1},
  {&__pyx_n_s_gettid, __pyx_k_gettid, sizeof(__pyx_k_gettid), 0, 0, 1, 1},
  {&__pyx_kp_s_got_differing_extents_in_dimensi, __pyx_k_got_differing_extents_in_dimensi, sizeof(__pyx_k_got_differing_extents_in_dimensi), 0, 0, 1, 0},
  {&__pyx_n_s_h, __pyx_k_h, sizeof(__pyx_k_h), 0, 0, 1, 1},
  {&__pyx_n_s_hasEdge, __pyx_k_hasEdge, sizeof(__pyx_k_hasEdge), 0, 0, 1, 1},
  {&__pyx_n_s_has_tag, __pyx_k_has_tag, sizeof(__pyx_k_has_tag), 0, 0, 1, 1},
  {&__pyx_n_s_header, __pyx_k_header, sizeof(__pyx_k_header), 0, 0, 1, 1},
  {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1},
  {&__pyx_n_s_id, __pyx_k_id, sizeof(__pyx_k_id), 0, 0, 1, 1},
  {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
  {&__pyx_n_s_infer_read_length, __pyx_k_infer_read_length, sizeof(__pyx_k_infer_read_length), 0, 0, 1, 1},
  {&__pyx_n_s_infile, __pyx_k_infile, sizeof(__pyx_k_infile), 0, 0, 1, 1},
  {&__pyx_n_s_info, __pyx_k_info, sizeof(__pyx_k_info), 0, 0, 1, 1},
  {&__pyx_n_u_info, __pyx_k_info, sizeof(__pyx_k_info), 0, 1, 0, 1},
  {&__pyx_n_s_init, __pyx_k_init, sizeof(__pyx_k_init), 0, 0, 1, 1},
  {&__pyx_n_u_input, __pyx_k_input, sizeof(__pyx_k_input), 0, 1, 0, 1},
  {&__pyx_n_s_intersecter, __pyx_k_intersecter, sizeof(__pyx_k_intersecter), 0, 0, 1, 1},
  {&__pyx_n_s_item, __pyx_k_item, sizeof(__pyx_k_item), 0, 0, 1, 1},
  {&__pyx_n_s_items, __pyx_k_items, sizeof(__pyx_k_items), 0, 0, 1, 1},
  {&__pyx_n_s_itemsize, __pyx_k_itemsize, sizeof(__pyx_k_itemsize), 0, 0, 1, 1},
  {&__pyx_kp_s_itemsize_0_for_cython_array, __pyx_k_itemsize_0_for_cython_array, sizeof(__pyx_k_itemsize_0_for_cython_array), 0, 0, 1, 0},
  {&__pyx_n_s_iter_genome, __pyx_k_iter_genome, sizeof(__pyx_k_iter_genome), 0, 0, 1, 1},
  {&__pyx_n_s_iteritems, __pyx_k_iteritems, sizeof(__pyx_k_iteritems), 0, 0, 1, 1},
  {&__pyx_n_s_k, __pyx_k_k, sizeof(__pyx_k_k), 0, 0, 1, 1},
  {&__pyx_n_s_key, __pyx_k_key, sizeof(__pyx_k_key), 0, 0, 1, 1},
  {&__pyx_n_u_l, __pyx_k_l, sizeof(__pyx_k_l), 0, 1, 0, 1},
  {&__pyx_n_s_left_dis, __pyx_k_left_dis, sizeof(__pyx_k_left_dis), 0, 0, 1, 1},
  {&__pyx_n_s_left_index, __pyx_k_left_index, sizeof(__pyx_k_left_index), 0, 0, 1, 1},
  {&__pyx_n_s_left_p, __pyx_k_left_p, sizeof(__pyx_k_left_p), 0, 0, 1, 1},
  {&__pyx_n_s_length, __pyx_k_length, sizeof(__pyx_k_length), 0, 0, 1, 1},
  {&__pyx_n_s_logging, __pyx_k_logging, sizeof(__pyx_k_logging), 0, 0, 1, 1},
  {&__pyx_n_s_lookup, __pyx_k_lookup, sizeof(__pyx_k_lookup), 0, 0, 1, 1},
  {&__pyx_n_s_low_mem, __pyx_k_low_mem, sizeof(__pyx_k_low_mem), 0, 0, 1, 1},
  {&__pyx_n_s_m, __pyx_k_m, sizeof(__pyx_k_m), 0, 0, 1, 1},
  {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
  {&__pyx_n_s_mapq, __pyx_k_mapq, sizeof(__pyx_k_mapq), 0, 0, 1, 1},
  {&__pyx_n_s_mapq_thresh, __pyx_k_mapq_thresh, sizeof(__pyx_k_mapq_thresh), 0, 0, 1, 1},
  {&__pyx_n_s_max_dist, __pyx_k_max_dist, sizeof(__pyx_k_max_dist), 0, 0, 1, 1},
  {&__pyx_n_s_memview, __pyx_k_memview, sizeof(__pyx_k_memview), 0, 0, 1, 1},
  {&__pyx_n_s_metaclass, __pyx_k_metaclass, sizeof(__pyx_k_metaclass), 0, 0, 1, 1},
  {&__pyx_n_s_min_support, __pyx_k_min_support, sizeof(__pyx_k_min_support), 0, 0, 1, 1},
  {&__pyx_n_s_min_sv_size, __pyx_k_min_sv_size, sizeof(__pyx_k_min_sv_size), 0, 0, 1, 1},
  {&__pyx_n_s_minimizer_breadth, __pyx_k_minimizer_breadth, sizeof(__pyx_k_minimizer_breadth), 0, 0, 1, 1},
  {&__pyx_n_s_minimizer_dist, __pyx_k_minimizer_dist, sizeof(__pyx_k_minimizer_dist), 0, 0, 1, 1},
  {&__pyx_n_s_minimizer_support_thresh, __pyx_k_minimizer_support_thresh, sizeof(__pyx_k_minimizer_support_thresh), 0, 0, 1, 1},
  {&__pyx_n_s_mm_only, __pyx_k_mm_only, sizeof(__pyx_k_mm_only), 0, 0, 1, 1},
  {&__pyx_n_s_mode, __pyx_k_mode, sizeof(__pyx_k_mode), 0, 0, 1, 1},
  {&__pyx_n_s_module, __pyx_k_module, sizeof(__pyx_k_module), 0, 0, 1, 1},
  {&__pyx_n_u_n2n, __pyx_k_n2n, sizeof(__pyx_k_n2n), 0, 1, 0, 1},
  {&__pyx_n_s_n_references, __pyx_k_n_references, sizeof(__pyx_k_n_references), 0, 0, 1, 1},
  {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
  {&__pyx_n_s_name_2, __pyx_k_name_2, sizeof(__pyx_k_name_2), 0, 0, 1, 1},
  {&__pyx_n_s_namedtuple, __pyx_k_namedtuple, sizeof(__pyx_k_namedtuple), 0, 0, 1, 1},
  {&__pyx_n_s_ndim, __pyx_k_ndim, sizeof(__pyx_k_ndim), 0, 0, 1, 1},
  {&__pyx_n_s_neighbors, __pyx_k_neighbors, sizeof(__pyx_k_neighbors), 0, 0, 1, 1},
  {&__pyx_n_s_new, __pyx_k_new, sizeof(__pyx_k_new), 0, 0, 1, 1},
  {&__pyx_kp_s_no_default___reduce___due_to_non, __pyx_k_no_default___reduce___due_to_non, sizeof(__pyx_k_no_default___reduce___due_to_non), 0, 0, 1, 0},
  {&__pyx_n_s_node_name, __pyx_k_node_name, sizeof(__pyx_k_node_name), 0, 0, 1, 1},
  {&__pyx_n_s_node_to_name, __pyx_k_node_to_name, sizeof(__pyx_k_node_to_name), 0, 0, 1, 1},
  {&__pyx_n_s_norm, __pyx_k_norm, sizeof(__pyx_k_norm), 0, 0, 1, 1},
  {&__pyx_n_s_norm_thresh, __pyx_k_norm_thresh, sizeof(__pyx_k_norm_thresh), 0, 0, 1, 1},
  {&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1},
  {&__pyx_n_s_nreferences, __pyx_k_nreferences, sizeof(__pyx_k_nreferences), 0, 0, 1, 1},
  {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
  {&__pyx_kp_u_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 1, 0, 0},
  {&__pyx_kp_u_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 1, 0, 0},
  {&__pyx_n_s_obj, __pyx_k_obj, sizeof(__pyx_k_obj), 0, 0, 1, 1},
  {&__pyx_n_s_overlap_regions, __pyx_k_overlap_regions, sizeof(__pyx_k_overlap_regions), 0, 0, 1, 1},
  {&__pyx_n_s_p, __pyx_k_p, sizeof(__pyx_k_p), 0, 0, 1, 1},
  {&__pyx_n_s_pack, __pyx_k_pack, sizeof(__pyx_k_pack), 0, 0, 1, 1},
  {&__pyx_n_s_paired_end, __pyx_k_paired_end, sizeof(__pyx_k_paired_end), 0, 0, 1, 1},
  {&__pyx_n_u_parts, __pyx_k_parts, sizeof(__pyx_k_parts), 0, 1, 0, 1},
  {&__pyx_n_s_pe_scope, __pyx_k_pe_scope, sizeof(__pyx_k_pe_scope), 0, 0, 1, 1},
  {&__pyx_n_s_pickle, __pyx_k_pickle, sizeof(__pyx_k_pickle), 0, 0, 1, 1},
  {&__pyx_n_s_pnext, __pyx_k_pnext, sizeof(__pyx_k_pnext), 0, 0, 1, 1},
  {&__pyx_n_s_pop, __pyx_k_pop, sizeof(__pyx_k_pop), 0, 0, 1, 1},
  {&__pyx_n_s_popleft, __pyx_k_popleft, sizeof(__pyx_k_popleft), 0, 0, 1, 1},
  {&__pyx_n_s_pos, __pyx_k_pos, sizeof(__pyx_k_pos), 0, 0, 1, 1},
  {&__pyx_n_s_prepare, __pyx_k_prepare, sizeof(__pyx_k_prepare), 0, 0, 1, 1},
  {&__pyx_n_s_procs, __pyx_k_procs, sizeof(__pyx_k_procs), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_PickleError, __pyx_k_pyx_PickleError, sizeof(__pyx_k_pyx_PickleError), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_checksum, __pyx_k_pyx_checksum, sizeof(__pyx_k_pyx_checksum), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_getbuffer, __pyx_k_pyx_getbuffer, sizeof(__pyx_k_pyx_getbuffer), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_result, __pyx_k_pyx_result, sizeof(__pyx_k_pyx_result), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_type, __pyx_k_pyx_type, sizeof(__pyx_k_pyx_type), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_unpickle_Enum, __pyx_k_pyx_unpickle_Enum, sizeof(__pyx_k_pyx_unpickle_Enum), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_unpickle_NodeName, __pyx_k_pyx_unpickle_NodeName, sizeof(__pyx_k_pyx_unpickle_NodeName), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_unpickle_TemplateEdges, __pyx_k_pyx_unpickle_TemplateEdges, sizeof(__pyx_k_pyx_unpickle_TemplateEdges), 0, 0, 1, 1},
  {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1},
  {&__pyx_n_s_qname, __pyx_k_qname, sizeof(__pyx_k_qname), 0, 0, 1, 1},
  {&__pyx_n_s_qualname, __pyx_k_qualname, sizeof(__pyx_k_qualname), 0, 0, 1, 1},
  {&__pyx_n_s_query_alignment_start, __pyx_k_query_alignment_start, sizeof(__pyx_k_query_alignment_start), 0, 0, 1, 1},
  {&__pyx_n_s_query_qualities, __pyx_k_query_qualities, sizeof(__pyx_k_query_qualities), 0, 0, 1, 1},
  {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1},
  {&__pyx_n_s_re, __pyx_k_re, sizeof(__pyx_k_re), 0, 0, 1, 1},
  {&__pyx_n_s_read_buffer, __pyx_k_read_buffer, sizeof(__pyx_k_read_buffer), 0, 0, 1, 1},
  {&__pyx_n_s_read_enum, __pyx_k_read_enum, sizeof(__pyx_k_read_enum), 0, 0, 1, 1},
  {&__pyx_n_s_read_length, __pyx_k_read_length, sizeof(__pyx_k_read_length), 0, 0, 1, 1},
  {&__pyx_n_u_reads, __pyx_k_reads, sizeof(__pyx_k_reads), 0, 1, 0, 1},
  {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1},
  {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1},
  {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1},
  {&__pyx_n_s_reference_end, __pyx_k_reference_end, sizeof(__pyx_k_reference_end), 0, 0, 1, 1},
  {&__pyx_n_s_right_dis, __pyx_k_right_dis, sizeof(__pyx_k_right_dis), 0, 0, 1, 1},
  {&__pyx_n_s_right_p, __pyx_k_right_p, sizeof(__pyx_k_right_p), 0, 0, 1, 1},
  {&__pyx_n_s_rname, __pyx_k_rname, sizeof(__pyx_k_rname), 0, 0, 1, 1},
  {&__pyx_n_s_rnext, __pyx_k_rnext, sizeof(__pyx_k_rnext), 0, 0, 1, 1},
  {&__pyx_n_s_s, __pyx_k_s, sizeof(__pyx_k_s), 0, 0, 1, 1},
  {&__pyx_n_u_s_between, __pyx_k_s_between, sizeof(__pyx_k_s_between), 0, 1, 0, 1},
  {&__pyx_n_u_s_within, __pyx_k_s_within, sizeof(__pyx_k_s_within), 0, 1, 0, 1},
  {&__pyx_n_s_scope, __pyx_k_scope, sizeof(__pyx_k_scope), 0, 0, 1, 1},
  {&__pyx_n_s_scope_back, __pyx_k_scope_back, sizeof(__pyx_k_scope_back), 0, 0, 1, 1},
  {&__pyx_n_s_scope_dist, __pyx_k_scope_dist, sizeof(__pyx_k_scope_dist), 0, 0, 1, 1},
  {&__pyx_n_s_scope_front, __pyx_k_scope_front, sizeof(__pyx_k_scope_front), 0, 0, 1, 1},
  {&__pyx_n_s_self, __pyx_k_self, sizeof(__pyx_k_self), 0, 0, 1, 1},
  {&__pyx_kp_s_self_chrom_scope_self_loci_canno, __pyx_k_self_chrom_scope_self_loci_canno, sizeof(__pyx_k_self_chrom_scope_self_loci_canno), 0, 0, 1, 0},
  {&__pyx_kp_s_self_clip_table_left_self_clip_t, __pyx_k_self_clip_table_left_self_clip_t, sizeof(__pyx_k_self_clip_table_left_self_clip_t), 0, 0, 1, 0},
  {&__pyx_n_s_seq, __pyx_k_seq, sizeof(__pyx_k_seq), 0, 0, 1, 1},
  {&__pyx_n_s_setstate, __pyx_k_setstate, sizeof(__pyx_k_setstate), 0, 0, 1, 1},
  {&__pyx_n_s_setstate_cython, __pyx_k_setstate_cython, sizeof(__pyx_k_setstate_cython), 0, 0, 1, 1},
  {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1},
  {&__pyx_n_s_site, __pyx_k_site, sizeof(__pyx_k_site), 0, 0, 1, 1},
  {&__pyx_n_s_sites, __pyx_k_sites, sizeof(__pyx_k_sites), 0, 0, 1, 1},
  {&__pyx_n_s_sites_index, __pyx_k_sites_index, sizeof(__pyx_k_sites_index), 0, 0, 1, 1},
  {&__pyx_n_s_sites_index_r, __pyx_k_sites_index_r, sizeof(__pyx_k_sites_index_r), 0, 0, 1, 1},
  {&__pyx_n_s_sites_queue, __pyx_k_sites_queue, sizeof(__pyx_k_sites_queue), 0, 0, 1, 1},
  {&__pyx_n_s_sites_scope, __pyx_k_sites_scope, sizeof(__pyx_k_sites_scope), 0, 0, 1, 1},
  {&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1},
  {&__pyx_n_s_sorted, __pyx_k_sorted, sizeof(__pyx_k_sorted), 0, 0, 1, 1},
  {&__pyx_n_s_sortedcontainers, __pyx_k_sortedcontainers, sizeof(__pyx_k_sortedcontainers), 0, 0, 1, 1},
  {&__pyx_n_s_sortedlist, __pyx_k_sortedlist, sizeof(__pyx_k_sortedlist), 0, 0, 1, 1},
  {&__pyx_n_s_spd_thresh, __pyx_k_spd_thresh, sizeof(__pyx_k_spd_thresh), 0, 0, 1, 1},
  {&__pyx_n_s_split, __pyx_k_split, sizeof(__pyx_k_split), 0, 0, 1, 1},
  {&__pyx_n_s_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 0, 1, 1},
  {&__pyx_n_u_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 1, 0, 1},
  {&__pyx_n_s_step, __pyx_k_step, sizeof(__pyx_k_step), 0, 0, 1, 1},
  {&__pyx_n_s_stop, __pyx_k_stop, sizeof(__pyx_k_stop), 0, 0, 1, 1},
  {&__pyx_kp_s_strided_and_direct, __pyx_k_strided_and_direct, sizeof(__pyx_k_strided_and_direct), 0, 0, 1, 0},
  {&__pyx_kp_s_strided_and_direct_or_indirect, __pyx_k_strided_and_direct_or_indirect, sizeof(__pyx_k_strided_and_direct_or_indirect), 0, 0, 1, 0},
  {&__pyx_kp_s_strided_and_indirect, __pyx_k_strided_and_indirect, sizeof(__pyx_k_strided_and_indirect), 0, 0, 1, 0},
  {&__pyx_kp_s_stringsource, __pyx_k_stringsource, sizeof(__pyx_k_stringsource), 0, 0, 1, 0},
  {&__pyx_n_s_struct, __pyx_k_struct, sizeof(__pyx_k_struct), 0, 0, 1, 1},
  {&__pyx_n_s_svlen, __pyx_k_svlen, sizeof(__pyx_k_svlen), 0, 0, 1, 1},
  {&__pyx_n_s_svtype, __pyx_k_svtype, sizeof(__pyx_k_svtype), 0, 0, 1, 1},
  {&__pyx_n_s_t, __pyx_k_t, sizeof(__pyx_k_t), 0, 0, 1, 1},
  {&__pyx_n_s_temp_dir, __pyx_k_temp_dir, sizeof(__pyx_k_temp_dir), 0, 0, 1, 1},
  {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
  {&__pyx_n_s_thresh, __pyx_k_thresh, sizeof(__pyx_k_thresh), 0, 0, 1, 1},
  {&__pyx_n_s_time, __pyx_k_time, sizeof(__pyx_k_time), 0, 0, 1, 1},
  {&__pyx_n_s_tlen, __pyx_k_tlen, sizeof(__pyx_k_tlen), 0, 0, 1, 1},
  {&__pyx_n_s_trust_ins_len, __pyx_k_trust_ins_len, sizeof(__pyx_k_trust_ins_len), 0, 0, 1, 1},
  {&__pyx_n_u_uint32, __pyx_k_uint32, sizeof(__pyx_k_uint32), 0, 1, 0, 1},
  {&__pyx_kp_s_unable_to_allocate_array_data, __pyx_k_unable_to_allocate_array_data, sizeof(__pyx_k_unable_to_allocate_array_data), 0, 0, 1, 0},
  {&__pyx_kp_s_unable_to_allocate_shape_and_str, __pyx_k_unable_to_allocate_shape_and_str, sizeof(__pyx_k_unable_to_allocate_shape_and_str), 0, 0, 1, 0},
  {&__pyx_n_s_unpack, __pyx_k_unpack, sizeof(__pyx_k_unpack), 0, 0, 1, 1},
  {&__pyx_n_s_update, __pyx_k_update, sizeof(__pyx_k_update), 0, 0, 1, 1},
  {&__pyx_n_u_utf8, __pyx_k_utf8, sizeof(__pyx_k_utf8), 0, 1, 0, 1},
  {&__pyx_n_s_v, __pyx_k_v, sizeof(__pyx_k_v), 0, 0, 1, 1},
  {&__pyx_kp_u_variants_from_input_sites, __pyx_k_variants_from_input_sites, sizeof(__pyx_k_variants_from_input_sites), 0, 1, 0, 0},
  {&__pyx_n_s_w, __pyx_k_w, sizeof(__pyx_k_w), 0, 0, 1, 1},
  {&__pyx_n_s_weight, __pyx_k_weight, sizeof(__pyx_k_weight), 0, 0, 1, 1},
  {0, 0, 0, 0, 0, 0, 0}
};
static CYTHON_SMALL_CODE int __Pyx_InitCachedBuiltins(void) {
  __pyx_builtin_TypeError = __Pyx_GetBuiltinName(__pyx_n_s_TypeError); if (!__pyx_builtin_TypeError) __PYX_ERR(0, 2, __pyx_L1_error)
  __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(1, 347, __pyx_L1_error)
  __pyx_builtin_sorted = __Pyx_GetBuiltinName(__pyx_n_s_sorted); if (!__pyx_builtin_sorted) __PYX_ERR(1, 754, __pyx_L1_error)
  __pyx_builtin_enumerate = __Pyx_GetBuiltinName(__pyx_n_s_enumerate); if (!__pyx_builtin_enumerate) __PYX_ERR(1, 1333, __pyx_L1_error)
  __pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_n_s_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(2, 944, __pyx_L1_error)
  __pyx_builtin_MemoryError = __Pyx_GetBuiltinName(__pyx_n_s_MemoryError); if (!__pyx_builtin_MemoryError) __PYX_ERR(3, 109, __pyx_L1_error)
  __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 134, __pyx_L1_error)
  __pyx_builtin_Ellipsis = __Pyx_GetBuiltinName(__pyx_n_s_Ellipsis); if (!__pyx_builtin_Ellipsis) __PYX_ERR(0, 406, __pyx_L1_error)
  __pyx_builtin_id = __Pyx_GetBuiltinName(__pyx_n_s_id); if (!__pyx_builtin_id) __PYX_ERR(0, 615, __pyx_L1_error)
  __pyx_builtin_IndexError = __Pyx_GetBuiltinName(__pyx_n_s_IndexError); if (!__pyx_builtin_IndexError) __PYX_ERR(0, 834, __pyx_L1_error)
  return 0;
  __pyx_L1_error:;
  return -1;
}

static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 */
  __pyx_tuple_ = PyTuple_Pack(1, __pyx_kp_s_self_clip_table_left_self_clip_t); if (unlikely(!__pyx_tuple_)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple_);
  __Pyx_GIVEREF(__pyx_tuple_);

  /* "(tree fragment)":4
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.clip_table_left,self.clip_table_right,self.read_minimizers_left,self.read_minimizers_right,self.scope_left,self.scope_right cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 */
  __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_s_self_clip_table_left_self_clip_t); if (unlikely(!__pyx_tuple__2)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__2);
  __Pyx_GIVEREF(__pyx_tuple__2);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 */
  __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_s_self_chrom_scope_self_loci_canno); if (unlikely(!__pyx_tuple__3)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__3);
  __Pyx_GIVEREF(__pyx_tuple__3);

  /* "(tree fragment)":4
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("self.chrom_scope,self.loci cannot be converted to a Python object for pickling")             # <<<<<<<<<<<<<<
 */
  __pyx_tuple__4 = PyTuple_Pack(1, __pyx_kp_s_self_chrom_scope_self_loci_canno); if (unlikely(!__pyx_tuple__4)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__4);
  __Pyx_GIVEREF(__pyx_tuple__4);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_tuple__5 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__5)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__5);
  __Pyx_GIVEREF(__pyx_tuple__5);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_tuple__6 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__6)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__6);
  __Pyx_GIVEREF(__pyx_tuple__6);

  /* "dysgu/graph.pyx":732
 *             break  # End
 * 
 *         sa = sa_block.split(",", 5)             # <<<<<<<<<<<<<<
 *         mq = int(sa[4])  # filter by mapq at later stage
 *         chrom2 = gettid(sa[0])
 */
  __pyx_tuple__12 = PyTuple_Pack(2, __pyx_kp_u__11, __pyx_int_5); if (unlikely(!__pyx_tuple__12)) __PYX_ERR(1, 732, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__12);
  __Pyx_GIVEREF(__pyx_tuple__12);

  /* "(tree fragment)":4
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 *     if __pyx_checksum not in (0x4a9a3f4, 0x8465993, 0x2f47083):             # <<<<<<<<<<<<<<
 *         from pickle import PickleError as __pyx_PickleError
 *         raise __pyx_PickleError("Incompatible checksums (0x%x vs (0x4a9a3f4, 0x8465993, 0x2f47083) = (templates_s))" % __pyx_checksum)
 */
  __pyx_tuple__14 = PyTuple_Pack(3, __pyx_int_78226420, __pyx_int_138828179, __pyx_int_49574019); if (unlikely(!__pyx_tuple__14)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__14);
  __Pyx_GIVEREF(__pyx_tuple__14);
  __pyx_tuple__15 = PyTuple_Pack(3, __pyx_int_68233231, __pyx_int_154740188, __pyx_int_19559303); if (unlikely(!__pyx_tuple__15)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__15);
  __Pyx_GIVEREF(__pyx_tuple__15);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":944
 *         __pyx_import_array()
 *     except Exception:
 *         raise ImportError("numpy.core.multiarray failed to import")             # <<<<<<<<<<<<<<
 * 
 * cdef inline int import_umath() except -1:
 */
  __pyx_tuple__16 = PyTuple_Pack(1, __pyx_kp_u_numpy_core_multiarray_failed_to); if (unlikely(!__pyx_tuple__16)) __PYX_ERR(2, 944, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__16);
  __Pyx_GIVEREF(__pyx_tuple__16);

  /* "../_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/python3.10/site-packages/numpy/__init__.pxd":950
 *         _import_umath()
 *     except Exception:
 *         raise ImportError("numpy.core.umath failed to import")             # <<<<<<<<<<<<<<
 * 
 * cdef inline int import_ufunc() except -1:
 */
  __pyx_tuple__17 = PyTuple_Pack(1, __pyx_kp_u_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__17)) __PYX_ERR(2, 950, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__17);
  __Pyx_GIVEREF(__pyx_tuple__17);

  /* "View.MemoryView":134
 * 
 *         if not self.ndim:
 *             raise ValueError("Empty shape tuple for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if itemsize <= 0:
 */
  __pyx_tuple__18 = PyTuple_Pack(1, __pyx_kp_s_Empty_shape_tuple_for_cython_arr); if (unlikely(!__pyx_tuple__18)) __PYX_ERR(0, 134, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__18);
  __Pyx_GIVEREF(__pyx_tuple__18);

  /* "View.MemoryView":137
 * 
 *         if itemsize <= 0:
 *             raise ValueError("itemsize <= 0 for cython.array")             # <<<<<<<<<<<<<<
 * 
 *         if not isinstance(format, bytes):
 */
  __pyx_tuple__19 = PyTuple_Pack(1, __pyx_kp_s_itemsize_0_for_cython_array); if (unlikely(!__pyx_tuple__19)) __PYX_ERR(0, 137, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__19);
  __Pyx_GIVEREF(__pyx_tuple__19);

  /* "View.MemoryView":149
 * 
 *         if not self._shape:
 *             raise MemoryError("unable to allocate shape and strides.")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__20 = PyTuple_Pack(1, __pyx_kp_s_unable_to_allocate_shape_and_str); if (unlikely(!__pyx_tuple__20)) __PYX_ERR(0, 149, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__20);
  __Pyx_GIVEREF(__pyx_tuple__20);

  /* "View.MemoryView":177
 *             self.data = <char *>malloc(self.len)
 *             if not self.data:
 *                 raise MemoryError("unable to allocate array data.")             # <<<<<<<<<<<<<<
 * 
 *             if self.dtype_is_object:
 */
  __pyx_tuple__21 = PyTuple_Pack(1, __pyx_kp_s_unable_to_allocate_array_data); if (unlikely(!__pyx_tuple__21)) __PYX_ERR(0, 177, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__21);
  __Pyx_GIVEREF(__pyx_tuple__21);

  /* "View.MemoryView":193
 *             bufmode = PyBUF_F_CONTIGUOUS | PyBUF_ANY_CONTIGUOUS
 *         if not (flags & bufmode):
 *             raise ValueError("Can only create a buffer that is contiguous in memory.")             # <<<<<<<<<<<<<<
 *         info.buf = self.data
 *         info.len = self.len
 */
  __pyx_tuple__22 = PyTuple_Pack(1, __pyx_kp_s_Can_only_create_a_buffer_that_is); if (unlikely(!__pyx_tuple__22)) __PYX_ERR(0, 193, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__22);
  __Pyx_GIVEREF(__pyx_tuple__22);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_tuple__23 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__23)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__23);
  __Pyx_GIVEREF(__pyx_tuple__23);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_tuple__24 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__24)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__24);
  __Pyx_GIVEREF(__pyx_tuple__24);

  /* "View.MemoryView":420
 *     def __setitem__(memoryview self, object index, object value):
 *         if self.view.readonly:
 *             raise TypeError("Cannot assign to read-only memoryview")             # <<<<<<<<<<<<<<
 * 
 *         have_slices, index = _unellipsify(index, self.view.ndim)
 */
  __pyx_tuple__25 = PyTuple_Pack(1, __pyx_kp_s_Cannot_assign_to_read_only_memor); if (unlikely(!__pyx_tuple__25)) __PYX_ERR(0, 420, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__25);
  __Pyx_GIVEREF(__pyx_tuple__25);

  /* "View.MemoryView":497
 *             result = struct.unpack(self.view.format, bytesitem)
 *         except struct.error:
 *             raise ValueError("Unable to convert item to object")             # <<<<<<<<<<<<<<
 *         else:
 *             if len(self.view.format) == 1:
 */
  __pyx_tuple__26 = PyTuple_Pack(1, __pyx_kp_s_Unable_to_convert_item_to_object); if (unlikely(!__pyx_tuple__26)) __PYX_ERR(0, 497, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__26);
  __Pyx_GIVEREF(__pyx_tuple__26);

  /* "View.MemoryView":522
 *     def __getbuffer__(self, Py_buffer *info, int flags):
 *         if flags & PyBUF_WRITABLE and self.view.readonly:
 *             raise ValueError("Cannot create writable memory view from read-only memoryview")             # <<<<<<<<<<<<<<
 * 
 *         if flags & PyBUF_ND:
 */
  __pyx_tuple__27 = PyTuple_Pack(1, __pyx_kp_s_Cannot_create_writable_memory_vi); if (unlikely(!__pyx_tuple__27)) __PYX_ERR(0, 522, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__27);
  __Pyx_GIVEREF(__pyx_tuple__27);

  /* "View.MemoryView":572
 *         if self.view.strides == NULL:
 * 
 *             raise ValueError("Buffer view does not expose strides")             # <<<<<<<<<<<<<<
 * 
 *         return tuple([stride for stride in self.view.strides[:self.view.ndim]])
 */
  __pyx_tuple__28 = PyTuple_Pack(1, __pyx_kp_s_Buffer_view_does_not_expose_stri); if (unlikely(!__pyx_tuple__28)) __PYX_ERR(0, 572, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__28);
  __Pyx_GIVEREF(__pyx_tuple__28);

  /* "View.MemoryView":579
 *     def suboffsets(self):
 *         if self.view.suboffsets == NULL:
 *             return (-1,) * self.view.ndim             # <<<<<<<<<<<<<<
 * 
 *         return tuple([suboffset for suboffset in self.view.suboffsets[:self.view.ndim]])
 */
  __pyx_tuple__29 = PyTuple_New(1); if (unlikely(!__pyx_tuple__29)) __PYX_ERR(0, 579, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__29);
  __Pyx_INCREF(__pyx_int_neg_1);
  __Pyx_GIVEREF(__pyx_int_neg_1);
  PyTuple_SET_ITEM(__pyx_tuple__29, 0, __pyx_int_neg_1);
  __Pyx_GIVEREF(__pyx_tuple__29);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_tuple__30 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__30)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__30);
  __Pyx_GIVEREF(__pyx_tuple__30);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_tuple__31 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__31)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__31);
  __Pyx_GIVEREF(__pyx_tuple__31);

  /* "View.MemoryView":684
 *         if item is Ellipsis:
 *             if not seen_ellipsis:
 *                 result.extend([slice(None)] * (ndim - len(tup) + 1))             # <<<<<<<<<<<<<<
 *                 seen_ellipsis = True
 *             else:
 */
  __pyx_slice__32 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__32)) __PYX_ERR(0, 684, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_slice__32);
  __Pyx_GIVEREF(__pyx_slice__32);

  /* "View.MemoryView":705
 *     for suboffset in suboffsets[:ndim]:
 *         if suboffset >= 0:
 *             raise ValueError("Indirect dimensions not supported")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__33 = PyTuple_Pack(1, __pyx_kp_s_Indirect_dimensions_not_supporte); if (unlikely(!__pyx_tuple__33)) __PYX_ERR(0, 705, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__33);
  __Pyx_GIVEREF(__pyx_tuple__33);

  /* "(tree fragment)":2
 * def __reduce_cython__(self):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 */
  __pyx_tuple__34 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__34)) __PYX_ERR(0, 2, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__34);
  __Pyx_GIVEREF(__pyx_tuple__34);

  /* "(tree fragment)":4
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")
 * def __setstate_cython__(self, __pyx_state):
 *     raise TypeError("no default __reduce__ due to non-trivial __cinit__")             # <<<<<<<<<<<<<<
 */
  __pyx_tuple__35 = PyTuple_Pack(1, __pyx_kp_s_no_default___reduce___due_to_non); if (unlikely(!__pyx_tuple__35)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__35);
  __Pyx_GIVEREF(__pyx_tuple__35);
  __pyx_tuple__36 = PyTuple_Pack(3, __pyx_int_184977713, __pyx_int_136983863, __pyx_int_112105877); if (unlikely(!__pyx_tuple__36)) __PYX_ERR(0, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__36);
  __Pyx_GIVEREF(__pyx_tuple__36);

  /* "dysgu/graph.pyx":1128
 * 
 * class SiteAdder:
 *     def __init__(self, sites):             # <<<<<<<<<<<<<<
 *         self.sites = {k: list(v) for k, v in sites.items()}
 *         self.sites_queue = sites  # dict of deque's
 */
  __pyx_tuple__37 = PyTuple_Pack(4, __pyx_n_s_self, __pyx_n_s_sites, __pyx_n_s_k, __pyx_n_s_v); if (unlikely(!__pyx_tuple__37)) __PYX_ERR(1, 1128, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__37);
  __Pyx_GIVEREF(__pyx_tuple__37);
  __pyx_codeobj__38 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__37, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_dysgu_graph_pyx, __pyx_n_s_init, 1128, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__38)) __PYX_ERR(1, 1128, __pyx_L1_error)

  /* "dysgu/graph.pyx":1142
 *         self.lookup = namedtuple("l", ["start"])
 * 
 *     def __contains__(self, item):             # <<<<<<<<<<<<<<
 *         if item in self.sites_index:
 *             return True
 */
  __pyx_tuple__39 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_item); if (unlikely(!__pyx_tuple__39)) __PYX_ERR(1, 1142, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__39);
  __Pyx_GIVEREF(__pyx_tuple__39);
  __pyx_codeobj__40 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__39, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_dysgu_graph_pyx, __pyx_n_s_contains, 1142, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__40)) __PYX_ERR(1, 1142, __pyx_L1_error)

  /* "dysgu/graph.pyx":1146
 *             return True
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.sites_index[item]
 * 
 */
  __pyx_tuple__41 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_item); if (unlikely(!__pyx_tuple__41)) __PYX_ERR(1, 1146, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__41);
  __Pyx_GIVEREF(__pyx_tuple__41);
  __pyx_codeobj__42 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__41, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_dysgu_graph_pyx, __pyx_n_s_getitem, 1146, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__42)) __PYX_ERR(1, 1146, __pyx_L1_error)

  /* "dysgu/graph.pyx":1149
 *         return self.sites_index[item]
 * 
 *     def find_nearest_site(self, chrom, pos):             # <<<<<<<<<<<<<<
 *         # return -1
 *         # search backwards from current_index for closest --site to pos
 */
  __pyx_tuple__43 = PyTuple_Pack(12, __pyx_n_s_self, __pyx_n_s_chrom, __pyx_n_s_pos, __pyx_n_s_cluster_dist, __pyx_n_s_scope_dist, __pyx_n_s_left_index, __pyx_n_s_i, __pyx_n_s_p, __pyx_n_s_left_p, __pyx_n_s_right_p, __pyx_n_s_left_dis, __pyx_n_s_right_dis); if (unlikely(!__pyx_tuple__43)) __PYX_ERR(1, 1149, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__43);
  __Pyx_GIVEREF(__pyx_tuple__43);
  __pyx_codeobj__44 = (PyObject*)__Pyx_PyCode_New(3, 0, 12, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__43, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_dysgu_graph_pyx, __pyx_n_s_find_nearest_site, 1149, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__44)) __PYX_ERR(1, 1149, __pyx_L1_error)

  /* "dysgu/graph.pyx":1186
 *             return -1
 * 
 *     def add_to_scope(self, site):             # <<<<<<<<<<<<<<
 *         if site.chrom == self.current_chrom:
 *             self.scope.add(site)
 */
  __pyx_tuple__45 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_site); if (unlikely(!__pyx_tuple__45)) __PYX_ERR(1, 1186, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__45);
  __Pyx_GIVEREF(__pyx_tuple__45);
  __pyx_codeobj__46 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__45, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_dysgu_graph_pyx, __pyx_n_s_add_to_scope, 1186, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__46)) __PYX_ERR(1, 1186, __pyx_L1_error)

  /* "dysgu/graph.pyx":1193
 *             self.current_chrom = site.chrom
 * 
 *     def add_any_sites(self, int chrom, int pos, G, PairedEndScoper_t pe_scope, NodeToName node_to_name, cluster_dist):             # <<<<<<<<<<<<<<
 * 
 *         cdef int node_name, start, stop, file_index
 */
  __pyx_tuple__47 = PyTuple_Pack(16, __pyx_n_s_self, __pyx_n_s_chrom, __pyx_n_s_pos, __pyx_n_s_G, __pyx_n_s_pe_scope, __pyx_n_s_node_to_name, __pyx_n_s_cluster_dist, __pyx_n_s_node_name, __pyx_n_s_start, __pyx_n_s_stop, __pyx_n_s_file_index, __pyx_n_s_read_enum, __pyx_n_s_s, __pyx_n_s_p, __pyx_n_s_site, __pyx_n_s_length); if (unlikely(!__pyx_tuple__47)) __PYX_ERR(1, 1193, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__47);
  __Pyx_GIVEREF(__pyx_tuple__47);
  __pyx_codeobj__48 = (PyObject*)__Pyx_PyCode_New(7, 0, 16, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__47, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_dysgu_graph_pyx, __pyx_n_s_add_any_sites, 1193, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__48)) __PYX_ERR(1, 1193, __pyx_L1_error)

  /* "(tree fragment)":1
 * def __pyx_unpickle_TemplateEdges(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */
  __pyx_tuple__49 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__49)) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__49);
  __Pyx_GIVEREF(__pyx_tuple__49);
  __pyx_codeobj__50 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__49, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_TemplateEdges, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__50)) __PYX_ERR(0, 1, __pyx_L1_error)
  __pyx_tuple__51 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__51)) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__51);
  __Pyx_GIVEREF(__pyx_tuple__51);
  __pyx_codeobj__52 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__51, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_NodeName, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__52)) __PYX_ERR(0, 1, __pyx_L1_error)

  /* "View.MemoryView":287
 *         return self.name
 * 
 * cdef generic = Enum("<strided and direct or indirect>")             # <<<<<<<<<<<<<<
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")
 */
  __pyx_tuple__53 = PyTuple_Pack(1, __pyx_kp_s_strided_and_direct_or_indirect); if (unlikely(!__pyx_tuple__53)) __PYX_ERR(0, 287, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__53);
  __Pyx_GIVEREF(__pyx_tuple__53);

  /* "View.MemoryView":288
 * 
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default             # <<<<<<<<<<<<<<
 * cdef indirect = Enum("<strided and indirect>")
 * 
 */
  __pyx_tuple__54 = PyTuple_Pack(1, __pyx_kp_s_strided_and_direct); if (unlikely(!__pyx_tuple__54)) __PYX_ERR(0, 288, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__54);
  __Pyx_GIVEREF(__pyx_tuple__54);

  /* "View.MemoryView":289
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__55 = PyTuple_Pack(1, __pyx_kp_s_strided_and_indirect); if (unlikely(!__pyx_tuple__55)) __PYX_ERR(0, 289, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__55);
  __Pyx_GIVEREF(__pyx_tuple__55);

  /* "View.MemoryView":292
 * 
 * 
 * cdef contiguous = Enum("<contiguous and direct>")             # <<<<<<<<<<<<<<
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")
 * 
 */
  __pyx_tuple__56 = PyTuple_Pack(1, __pyx_kp_s_contiguous_and_direct); if (unlikely(!__pyx_tuple__56)) __PYX_ERR(0, 292, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__56);
  __Pyx_GIVEREF(__pyx_tuple__56);

  /* "View.MemoryView":293
 * 
 * cdef contiguous = Enum("<contiguous and direct>")
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_tuple__57 = PyTuple_Pack(1, __pyx_kp_s_contiguous_and_indirect); if (unlikely(!__pyx_tuple__57)) __PYX_ERR(0, 293, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__57);
  __Pyx_GIVEREF(__pyx_tuple__57);

  /* "(tree fragment)":1
 * def __pyx_unpickle_Enum(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */
  __pyx_tuple__58 = PyTuple_Pack(5, __pyx_n_s_pyx_type, __pyx_n_s_pyx_checksum, __pyx_n_s_pyx_state, __pyx_n_s_pyx_PickleError, __pyx_n_s_pyx_result); if (unlikely(!__pyx_tuple__58)) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_tuple__58);
  __Pyx_GIVEREF(__pyx_tuple__58);
  __pyx_codeobj__59 = (PyObject*)__Pyx_PyCode_New(3, 0, 5, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__58, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_stringsource, __pyx_n_s_pyx_unpickle_Enum, 1, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__59)) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_RefNannyFinishContext();
  return 0;
  __pyx_L1_error:;
  __Pyx_RefNannyFinishContext();
  return -1;
}

static CYTHON_SMALL_CODE int __Pyx_InitGlobals(void) {
  __pyx_umethod_PySet_Type_update.type = (PyObject*)&PySet_Type;
  if (__Pyx_InitStrings(__pyx_string_tab) < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_2 = PyInt_FromLong(2); if (unlikely(!__pyx_int_2)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_4 = PyInt_FromLong(4); if (unlikely(!__pyx_int_4)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_5 = PyInt_FromLong(5); if (unlikely(!__pyx_int_5)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_8 = PyInt_FromLong(8); if (unlikely(!__pyx_int_8)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_16 = PyInt_FromLong(16); if (unlikely(!__pyx_int_16)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_2304 = PyInt_FromLong(2304); if (unlikely(!__pyx_int_2304)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_19559303 = PyInt_FromLong(19559303L); if (unlikely(!__pyx_int_19559303)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_49574019 = PyInt_FromLong(49574019L); if (unlikely(!__pyx_int_49574019)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_68233231 = PyInt_FromLong(68233231L); if (unlikely(!__pyx_int_68233231)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_78226420 = PyInt_FromLong(78226420L); if (unlikely(!__pyx_int_78226420)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_112105877 = PyInt_FromLong(112105877L); if (unlikely(!__pyx_int_112105877)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_136983863 = PyInt_FromLong(136983863L); if (unlikely(!__pyx_int_136983863)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_138828179 = PyInt_FromLong(138828179L); if (unlikely(!__pyx_int_138828179)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_154740188 = PyInt_FromLong(154740188L); if (unlikely(!__pyx_int_154740188)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_184977713 = PyInt_FromLong(184977713L); if (unlikely(!__pyx_int_184977713)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_int_neg_1 = PyInt_FromLong(-1); if (unlikely(!__pyx_int_neg_1)) __PYX_ERR(1, 1, __pyx_L1_error)
  return 0;
  __pyx_L1_error:;
  return -1;
}

static CYTHON_SMALL_CODE int __Pyx_modinit_global_init_code(void); /*proto*/
static CYTHON_SMALL_CODE int __Pyx_modinit_variable_export_code(void); /*proto*/
static CYTHON_SMALL_CODE int __Pyx_modinit_function_export_code(void); /*proto*/
static CYTHON_SMALL_CODE int __Pyx_modinit_type_init_code(void); /*proto*/
static CYTHON_SMALL_CODE int __Pyx_modinit_type_import_code(void); /*proto*/
static CYTHON_SMALL_CODE int __Pyx_modinit_variable_import_code(void); /*proto*/
static CYTHON_SMALL_CODE int __Pyx_modinit_function_import_code(void); /*proto*/

static int __Pyx_modinit_global_init_code(void) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__Pyx_modinit_global_init_code", 0);
  /*--- Global init code ---*/
  generic = Py_None; Py_INCREF(Py_None);
  strided = Py_None; Py_INCREF(Py_None);
  indirect = Py_None; Py_INCREF(Py_None);
  contiguous = Py_None; Py_INCREF(Py_None);
  indirect_contiguous = Py_None; Py_INCREF(Py_None);
  __Pyx_RefNannyFinishContext();
  return 0;
}

static int __Pyx_modinit_variable_export_code(void) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__Pyx_modinit_variable_export_code", 0);
  /*--- Variable export code ---*/
  __Pyx_RefNannyFinishContext();
  return 0;
}

static int __Pyx_modinit_function_export_code(void) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__Pyx_modinit_function_export_code", 0);
  /*--- Function export code ---*/
  __Pyx_RefNannyFinishContext();
  return 0;
}

static int __Pyx_modinit_type_init_code(void) {
  __Pyx_RefNannyDeclarations
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__Pyx_modinit_type_init_code", 0);
  /*--- Type init code ---*/
  __pyx_vtabptr_5dysgu_5graph_ClipScoper = &__pyx_vtable_5dysgu_5graph_ClipScoper;
  __pyx_vtable_5dysgu_5graph_ClipScoper._add_m_find_candidates = (void (*)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, PyObject *, int, int, int, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &, robin_hood::unordered_set<int>  &))__pyx_f_5dysgu_5graph_10ClipScoper__add_m_find_candidates;
  __pyx_vtable_5dysgu_5graph_ClipScoper._refresh_scope = (void (*)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, std::deque<std::pair<int,int> >  &, int, MinimizerTable &, robin_hood::unordered_map<uint64_t,robin_hood::unordered_set<uint64_t> >  &, int))__pyx_f_5dysgu_5graph_10ClipScoper__refresh_scope;
  __pyx_vtable_5dysgu_5graph_ClipScoper._insert = (void (*)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, PyObject *, int, int, int, int, robin_hood::unordered_set<int>  &))__pyx_f_5dysgu_5graph_10ClipScoper__insert;
  __pyx_vtable_5dysgu_5graph_ClipScoper.update = (void (*)(struct __pyx_obj_5dysgu_5graph_ClipScoper *, PyObject *, int, int, int, robin_hood::unordered_set<int>  &))__pyx_f_5dysgu_5graph_10ClipScoper_update;
  if (PyType_Ready(&__pyx_type_5dysgu_5graph_ClipScoper) < 0) __PYX_ERR(1, 119, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type_5dysgu_5graph_ClipScoper.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_5dysgu_5graph_ClipScoper.tp_dictoffset && __pyx_type_5dysgu_5graph_ClipScoper.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type_5dysgu_5graph_ClipScoper.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (__Pyx_SetVtable(__pyx_type_5dysgu_5graph_ClipScoper.tp_dict, __pyx_vtabptr_5dysgu_5graph_ClipScoper) < 0) __PYX_ERR(1, 119, __pyx_L1_error)
  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_ClipScoper, (PyObject *)&__pyx_type_5dysgu_5graph_ClipScoper) < 0) __PYX_ERR(1, 119, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type_5dysgu_5graph_ClipScoper) < 0) __PYX_ERR(1, 119, __pyx_L1_error)
  __pyx_ptype_5dysgu_5graph_ClipScoper = &__pyx_type_5dysgu_5graph_ClipScoper;
  __pyx_vtabptr_5dysgu_5graph_PairedEndScoper = &__pyx_vtable_5dysgu_5graph_PairedEndScoper;
  __pyx_vtable_5dysgu_5graph_PairedEndScoper.empty_scopes = (void (*)(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *))__pyx_f_5dysgu_5graph_15PairedEndScoper_empty_scopes;
  __pyx_vtable_5dysgu_5graph_PairedEndScoper.find_other_nodes = (std::vector<int>  (*)(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *, int, int, int, int, int, __pyx_t_5dysgu_5graph_ReadEnum_t, int, int))__pyx_f_5dysgu_5graph_15PairedEndScoper_find_other_nodes;
  __pyx_vtable_5dysgu_5graph_PairedEndScoper.add_item = (void (*)(struct __pyx_obj_5dysgu_5graph_PairedEndScoper *, int, int, int, int, int, __pyx_t_5dysgu_5graph_ReadEnum_t, int))__pyx_f_5dysgu_5graph_15PairedEndScoper_add_item;
  if (PyType_Ready(&__pyx_type_5dysgu_5graph_PairedEndScoper) < 0) __PYX_ERR(1, 326, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type_5dysgu_5graph_PairedEndScoper.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_5dysgu_5graph_PairedEndScoper.tp_dictoffset && __pyx_type_5dysgu_5graph_PairedEndScoper.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type_5dysgu_5graph_PairedEndScoper.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (__Pyx_SetVtable(__pyx_type_5dysgu_5graph_PairedEndScoper.tp_dict, __pyx_vtabptr_5dysgu_5graph_PairedEndScoper) < 0) __PYX_ERR(1, 326, __pyx_L1_error)
  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_PairedEndScoper, (PyObject *)&__pyx_type_5dysgu_5graph_PairedEndScoper) < 0) __PYX_ERR(1, 326, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type_5dysgu_5graph_PairedEndScoper) < 0) __PYX_ERR(1, 326, __pyx_L1_error)
  __pyx_ptype_5dysgu_5graph_PairedEndScoper = &__pyx_type_5dysgu_5graph_PairedEndScoper;
  __pyx_vtabptr_5dysgu_5graph_TemplateEdges = &__pyx_vtable_5dysgu_5graph_TemplateEdges;
  __pyx_vtable_5dysgu_5graph_TemplateEdges.add = (void (*)(struct __pyx_obj_5dysgu_5graph_TemplateEdges *, PyObject *, int, int, int))__pyx_f_5dysgu_5graph_13TemplateEdges_add;
  if (PyType_Ready(&__pyx_type_5dysgu_5graph_TemplateEdges) < 0) __PYX_ERR(1, 545, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type_5dysgu_5graph_TemplateEdges.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_5dysgu_5graph_TemplateEdges.tp_dictoffset && __pyx_type_5dysgu_5graph_TemplateEdges.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type_5dysgu_5graph_TemplateEdges.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (__Pyx_SetVtable(__pyx_type_5dysgu_5graph_TemplateEdges.tp_dict, __pyx_vtabptr_5dysgu_5graph_TemplateEdges) < 0) __PYX_ERR(1, 545, __pyx_L1_error)
  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_TemplateEdges, (PyObject *)&__pyx_type_5dysgu_5graph_TemplateEdges) < 0) __PYX_ERR(1, 545, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type_5dysgu_5graph_TemplateEdges) < 0) __PYX_ERR(1, 545, __pyx_L1_error)
  __pyx_ptype_5dysgu_5graph_TemplateEdges = &__pyx_type_5dysgu_5graph_TemplateEdges;
  if (PyType_Ready(&__pyx_type_5dysgu_5graph_NodeName) < 0) __PYX_ERR(1, 631, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type_5dysgu_5graph_NodeName.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_5dysgu_5graph_NodeName.tp_dictoffset && __pyx_type_5dysgu_5graph_NodeName.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type_5dysgu_5graph_NodeName.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_NodeName, (PyObject *)&__pyx_type_5dysgu_5graph_NodeName) < 0) __PYX_ERR(1, 631, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type_5dysgu_5graph_NodeName) < 0) __PYX_ERR(1, 631, __pyx_L1_error)
  __pyx_ptype_5dysgu_5graph_NodeName = &__pyx_type_5dysgu_5graph_NodeName;
  __pyx_vtabptr_5dysgu_5graph_NodeToName = &__pyx_vtable_5dysgu_5graph_NodeToName;
  __pyx_vtable_5dysgu_5graph_NodeToName.append = (void (*)(struct __pyx_obj_5dysgu_5graph_NodeToName *, long, int, int, int, long, int, int))__pyx_f_5dysgu_5graph_10NodeToName_append;
  if (PyType_Ready(&__pyx_type_5dysgu_5graph_NodeToName) < 0) __PYX_ERR(1, 651, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type_5dysgu_5graph_NodeToName.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_5dysgu_5graph_NodeToName.tp_dictoffset && __pyx_type_5dysgu_5graph_NodeToName.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type_5dysgu_5graph_NodeToName.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (__Pyx_SetVtable(__pyx_type_5dysgu_5graph_NodeToName.tp_dict, __pyx_vtabptr_5dysgu_5graph_NodeToName) < 0) __PYX_ERR(1, 651, __pyx_L1_error)
  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_NodeToName, (PyObject *)&__pyx_type_5dysgu_5graph_NodeToName) < 0) __PYX_ERR(1, 651, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type_5dysgu_5graph_NodeToName) < 0) __PYX_ERR(1, 651, __pyx_L1_error)
  __pyx_ptype_5dysgu_5graph_NodeToName = &__pyx_type_5dysgu_5graph_NodeToName;
  __pyx_vtabptr_array = &__pyx_vtable_array;
  __pyx_vtable_array.get_memview = (PyObject *(*)(struct __pyx_array_obj *))__pyx_array_get_memview;
  if (PyType_Ready(&__pyx_type___pyx_array) < 0) __PYX_ERR(0, 106, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type___pyx_array.tp_print = 0;
  #endif
  if (__Pyx_SetVtable(__pyx_type___pyx_array.tp_dict, __pyx_vtabptr_array) < 0) __PYX_ERR(0, 106, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type___pyx_array) < 0) __PYX_ERR(0, 106, __pyx_L1_error)
  __pyx_array_type = &__pyx_type___pyx_array;
  if (PyType_Ready(&__pyx_type___pyx_MemviewEnum) < 0) __PYX_ERR(0, 280, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type___pyx_MemviewEnum.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type___pyx_MemviewEnum.tp_dictoffset && __pyx_type___pyx_MemviewEnum.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type___pyx_MemviewEnum.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type___pyx_MemviewEnum) < 0) __PYX_ERR(0, 280, __pyx_L1_error)
  __pyx_MemviewEnum_type = &__pyx_type___pyx_MemviewEnum;
  __pyx_vtabptr_memoryview = &__pyx_vtable_memoryview;
  __pyx_vtable_memoryview.get_item_pointer = (char *(*)(struct __pyx_memoryview_obj *, PyObject *))__pyx_memoryview_get_item_pointer;
  __pyx_vtable_memoryview.is_slice = (PyObject *(*)(struct __pyx_memoryview_obj *, PyObject *))__pyx_memoryview_is_slice;
  __pyx_vtable_memoryview.setitem_slice_assignment = (PyObject *(*)(struct __pyx_memoryview_obj *, PyObject *, PyObject *))__pyx_memoryview_setitem_slice_assignment;
  __pyx_vtable_memoryview.setitem_slice_assign_scalar = (PyObject *(*)(struct __pyx_memoryview_obj *, struct __pyx_memoryview_obj *, PyObject *))__pyx_memoryview_setitem_slice_assign_scalar;
  __pyx_vtable_memoryview.setitem_indexed = (PyObject *(*)(struct __pyx_memoryview_obj *, PyObject *, PyObject *))__pyx_memoryview_setitem_indexed;
  __pyx_vtable_memoryview.convert_item_to_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *))__pyx_memoryview_convert_item_to_object;
  __pyx_vtable_memoryview.assign_item_from_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *, PyObject *))__pyx_memoryview_assign_item_from_object;
  if (PyType_Ready(&__pyx_type___pyx_memoryview) < 0) __PYX_ERR(0, 331, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type___pyx_memoryview.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type___pyx_memoryview.tp_dictoffset && __pyx_type___pyx_memoryview.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type___pyx_memoryview.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (__Pyx_SetVtable(__pyx_type___pyx_memoryview.tp_dict, __pyx_vtabptr_memoryview) < 0) __PYX_ERR(0, 331, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type___pyx_memoryview) < 0) __PYX_ERR(0, 331, __pyx_L1_error)
  __pyx_memoryview_type = &__pyx_type___pyx_memoryview;
  __pyx_vtabptr__memoryviewslice = &__pyx_vtable__memoryviewslice;
  __pyx_vtable__memoryviewslice.__pyx_base = *__pyx_vtabptr_memoryview;
  __pyx_vtable__memoryviewslice.__pyx_base.convert_item_to_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *))__pyx_memoryviewslice_convert_item_to_object;
  __pyx_vtable__memoryviewslice.__pyx_base.assign_item_from_object = (PyObject *(*)(struct __pyx_memoryview_obj *, char *, PyObject *))__pyx_memoryviewslice_assign_item_from_object;
  __pyx_type___pyx_memoryviewslice.tp_base = __pyx_memoryview_type;
  if (PyType_Ready(&__pyx_type___pyx_memoryviewslice) < 0) __PYX_ERR(0, 967, __pyx_L1_error)
  #if PY_VERSION_HEX < 0x030800B1
  __pyx_type___pyx_memoryviewslice.tp_print = 0;
  #endif
  if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type___pyx_memoryviewslice.tp_dictoffset && __pyx_type___pyx_memoryviewslice.tp_getattro == PyObject_GenericGetAttr)) {
    __pyx_type___pyx_memoryviewslice.tp_getattro = __Pyx_PyObject_GenericGetAttr;
  }
  if (__Pyx_SetVtable(__pyx_type___pyx_memoryviewslice.tp_dict, __pyx_vtabptr__memoryviewslice) < 0) __PYX_ERR(0, 967, __pyx_L1_error)
  if (__Pyx_setup_reduce((PyObject*)&__pyx_type___pyx_memoryviewslice) < 0) __PYX_ERR(0, 967, __pyx_L1_error)
  __pyx_memoryviewslice_type = &__pyx_type___pyx_memoryviewslice;
  __Pyx_RefNannyFinishContext();
  return 0;
  __pyx_L1_error:;
  __Pyx_RefNannyFinishContext();
  return -1;
}

static int __Pyx_modinit_type_import_code(void) {
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__Pyx_modinit_type_import_code", 0);
  /*--- Type import code ---*/
  __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(4, 9, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type", 
  #if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000
  sizeof(PyTypeObject),
  #else
  sizeof(PyHeapTypeObject),
  #endif
  __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(4, 9, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(5, 8, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_7cpython_4bool_bool = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "bool", sizeof(PyBoolObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_7cpython_4bool_bool) __PYX_ERR(5, 8, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(6, 15, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_7cpython_7complex_complex = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "complex", sizeof(PyComplexObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_7cpython_7complex_complex) __PYX_ERR(6, 15, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule("numpy"); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 199, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_5numpy_dtype = __Pyx_ImportType(__pyx_t_1, "numpy", "dtype", sizeof(PyArray_Descr), __Pyx_ImportType_CheckSize_Ignore);
   if (!__pyx_ptype_5numpy_dtype) __PYX_ERR(2, 199, __pyx_L1_error)
  __pyx_ptype_5numpy_flatiter = __Pyx_ImportType(__pyx_t_1, "numpy", "flatiter", sizeof(PyArrayIterObject), __Pyx_ImportType_CheckSize_Ignore);
   if (!__pyx_ptype_5numpy_flatiter) __PYX_ERR(2, 222, __pyx_L1_error)
  __pyx_ptype_5numpy_broadcast = __Pyx_ImportType(__pyx_t_1, "numpy", "broadcast", sizeof(PyArrayMultiIterObject), __Pyx_ImportType_CheckSize_Ignore);
   if (!__pyx_ptype_5numpy_broadcast) __PYX_ERR(2, 226, __pyx_L1_error)
  __pyx_ptype_5numpy_ndarray = __Pyx_ImportType(__pyx_t_1, "numpy", "ndarray", sizeof(PyArrayObject), __Pyx_ImportType_CheckSize_Ignore);
   if (!__pyx_ptype_5numpy_ndarray) __PYX_ERR(2, 238, __pyx_L1_error)
  __pyx_ptype_5numpy_generic = __Pyx_ImportType(__pyx_t_1, "numpy", "generic", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_generic) __PYX_ERR(2, 770, __pyx_L1_error)
  __pyx_ptype_5numpy_number = __Pyx_ImportType(__pyx_t_1, "numpy", "number", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_number) __PYX_ERR(2, 772, __pyx_L1_error)
  __pyx_ptype_5numpy_integer = __Pyx_ImportType(__pyx_t_1, "numpy", "integer", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_integer) __PYX_ERR(2, 774, __pyx_L1_error)
  __pyx_ptype_5numpy_signedinteger = __Pyx_ImportType(__pyx_t_1, "numpy", "signedinteger", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_signedinteger) __PYX_ERR(2, 776, __pyx_L1_error)
  __pyx_ptype_5numpy_unsignedinteger = __Pyx_ImportType(__pyx_t_1, "numpy", "unsignedinteger", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_unsignedinteger) __PYX_ERR(2, 778, __pyx_L1_error)
  __pyx_ptype_5numpy_inexact = __Pyx_ImportType(__pyx_t_1, "numpy", "inexact", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_inexact) __PYX_ERR(2, 780, __pyx_L1_error)
  __pyx_ptype_5numpy_floating = __Pyx_ImportType(__pyx_t_1, "numpy", "floating", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_floating) __PYX_ERR(2, 782, __pyx_L1_error)
  __pyx_ptype_5numpy_complexfloating = __Pyx_ImportType(__pyx_t_1, "numpy", "complexfloating", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_complexfloating) __PYX_ERR(2, 784, __pyx_L1_error)
  __pyx_ptype_5numpy_flexible = __Pyx_ImportType(__pyx_t_1, "numpy", "flexible", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_flexible) __PYX_ERR(2, 786, __pyx_L1_error)
  __pyx_ptype_5numpy_character = __Pyx_ImportType(__pyx_t_1, "numpy", "character", sizeof(PyObject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5numpy_character) __PYX_ERR(2, 788, __pyx_L1_error)
  __pyx_ptype_5numpy_ufunc = __Pyx_ImportType(__pyx_t_1, "numpy", "ufunc", sizeof(PyUFuncObject), __Pyx_ImportType_CheckSize_Ignore);
   if (!__pyx_ptype_5numpy_ufunc) __PYX_ERR(2, 826, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule("array"); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 58, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_7cpython_5array_array = __Pyx_ImportType(__pyx_t_1, "array", "array", sizeof(arrayobject), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_7cpython_5array_array) __PYX_ERR(3, 58, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule("dysgu.map_set_utils"); if (unlikely(!__pyx_t_1)) __PYX_ERR(7, 99, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_5dysgu_13map_set_utils_Py_BasicIntervalTree = __Pyx_ImportType(__pyx_t_1, "dysgu.map_set_utils", "Py_BasicIntervalTree", sizeof(struct __pyx_obj_5dysgu_13map_set_utils_Py_BasicIntervalTree), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5dysgu_13map_set_utils_Py_BasicIntervalTree) __PYX_ERR(7, 99, __pyx_L1_error)
  __pyx_vtabptr_5dysgu_13map_set_utils_Py_BasicIntervalTree = (struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_BasicIntervalTree*)__Pyx_GetVtable(__pyx_ptype_5dysgu_13map_set_utils_Py_BasicIntervalTree->tp_dict); if (unlikely(!__pyx_vtabptr_5dysgu_13map_set_utils_Py_BasicIntervalTree)) __PYX_ERR(7, 99, __pyx_L1_error)
  __pyx_ptype_5dysgu_13map_set_utils_Py_DiGraph = __Pyx_ImportType(__pyx_t_1, "dysgu.map_set_utils", "Py_DiGraph", sizeof(struct __pyx_obj_5dysgu_13map_set_utils_Py_DiGraph), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5dysgu_13map_set_utils_Py_DiGraph) __PYX_ERR(7, 125, __pyx_L1_error)
  __pyx_vtabptr_5dysgu_13map_set_utils_Py_DiGraph = (struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_DiGraph*)__Pyx_GetVtable(__pyx_ptype_5dysgu_13map_set_utils_Py_DiGraph->tp_dict); if (unlikely(!__pyx_vtabptr_5dysgu_13map_set_utils_Py_DiGraph)) __PYX_ERR(7, 125, __pyx_L1_error)
  __pyx_ptype_5dysgu_13map_set_utils_Py_SimpleGraph = __Pyx_ImportType(__pyx_t_1, "dysgu.map_set_utils", "Py_SimpleGraph", sizeof(struct __pyx_obj_5dysgu_13map_set_utils_Py_SimpleGraph), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5dysgu_13map_set_utils_Py_SimpleGraph) __PYX_ERR(7, 170, __pyx_L1_error)
  __pyx_vtabptr_5dysgu_13map_set_utils_Py_SimpleGraph = (struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_SimpleGraph*)__Pyx_GetVtable(__pyx_ptype_5dysgu_13map_set_utils_Py_SimpleGraph->tp_dict); if (unlikely(!__pyx_vtabptr_5dysgu_13map_set_utils_Py_SimpleGraph)) __PYX_ERR(7, 170, __pyx_L1_error)
  __pyx_ptype_5dysgu_13map_set_utils_Py_Int2IntMap = __Pyx_ImportType(__pyx_t_1, "dysgu.map_set_utils", "Py_Int2IntMap", sizeof(struct __pyx_obj_5dysgu_13map_set_utils_Py_Int2IntMap), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5dysgu_13map_set_utils_Py_Int2IntMap) __PYX_ERR(7, 196, __pyx_L1_error)
  __pyx_vtabptr_5dysgu_13map_set_utils_Py_Int2IntMap = (struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_Int2IntMap*)__Pyx_GetVtable(__pyx_ptype_5dysgu_13map_set_utils_Py_Int2IntMap->tp_dict); if (unlikely(!__pyx_vtabptr_5dysgu_13map_set_utils_Py_Int2IntMap)) __PYX_ERR(7, 196, __pyx_L1_error)
  __pyx_ptype_5dysgu_13map_set_utils_Py_IntSet = __Pyx_ImportType(__pyx_t_1, "dysgu.map_set_utils", "Py_IntSet", sizeof(struct __pyx_obj_5dysgu_13map_set_utils_Py_IntSet), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5dysgu_13map_set_utils_Py_IntSet) __PYX_ERR(7, 218, __pyx_L1_error)
  __pyx_vtabptr_5dysgu_13map_set_utils_Py_IntSet = (struct __pyx_vtabstruct_5dysgu_13map_set_utils_Py_IntSet*)__Pyx_GetVtable(__pyx_ptype_5dysgu_13map_set_utils_Py_IntSet->tp_dict); if (unlikely(!__pyx_vtabptr_5dysgu_13map_set_utils_Py_IntSet)) __PYX_ERR(7, 218, __pyx_L1_error)
  __pyx_ptype_5dysgu_13map_set_utils_EventResult = __Pyx_ImportType(__pyx_t_1, "dysgu.map_set_utils", "EventResult", sizeof(struct __pyx_obj_5dysgu_13map_set_utils_EventResult), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5dysgu_13map_set_utils_EventResult) __PYX_ERR(7, 317, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule("pysam.libchtslib"); if (unlikely(!__pyx_t_1)) __PYX_ERR(8, 2680, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_5pysam_10libchtslib_HTSFile = __Pyx_ImportType(__pyx_t_1, "pysam.libchtslib", "HTSFile", sizeof(struct __pyx_obj_5pysam_10libchtslib_HTSFile), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_10libchtslib_HTSFile) __PYX_ERR(8, 2680, __pyx_L1_error)
  __pyx_vtabptr_5pysam_10libchtslib_HTSFile = (struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_10libchtslib_HTSFile->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_10libchtslib_HTSFile)) __PYX_ERR(8, 2680, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule("pysam.libcfaidx"); if (unlikely(!__pyx_t_1)) __PYX_ERR(9, 37, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_5pysam_9libcfaidx_FastaFile = __Pyx_ImportType(__pyx_t_1, "pysam.libcfaidx", "FastaFile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastaFile), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_9libcfaidx_FastaFile) __PYX_ERR(9, 37, __pyx_L1_error)
  __pyx_vtabptr_5pysam_9libcfaidx_FastaFile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastaFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastaFile->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastaFile)) __PYX_ERR(9, 37, __pyx_L1_error)
  __pyx_ptype_5pysam_9libcfaidx_FastqProxy = __Pyx_ImportType(__pyx_t_1, "pysam.libcfaidx", "FastqProxy", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastqProxy), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_9libcfaidx_FastqProxy) __PYX_ERR(9, 45, __pyx_L1_error)
  __pyx_vtabptr_5pysam_9libcfaidx_FastqProxy = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqProxy*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastqProxy->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastqProxy)) __PYX_ERR(9, 45, __pyx_L1_error)
  __pyx_ptype_5pysam_9libcfaidx_FastxRecord = __Pyx_ImportType(__pyx_t_1, "pysam.libcfaidx", "FastxRecord", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastxRecord), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_9libcfaidx_FastxRecord) __PYX_ERR(9, 52, __pyx_L1_error)
  __pyx_vtabptr_5pysam_9libcfaidx_FastxRecord = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxRecord*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastxRecord->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastxRecord)) __PYX_ERR(9, 52, __pyx_L1_error)
  __pyx_ptype_5pysam_9libcfaidx_FastxFile = __Pyx_ImportType(__pyx_t_1, "pysam.libcfaidx", "FastxFile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastxFile), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_9libcfaidx_FastxFile) __PYX_ERR(9, 61, __pyx_L1_error)
  __pyx_vtabptr_5pysam_9libcfaidx_FastxFile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastxFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastxFile->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastxFile)) __PYX_ERR(9, 61, __pyx_L1_error)
  __pyx_ptype_5pysam_9libcfaidx_FastqFile = __Pyx_ImportType(__pyx_t_1, "pysam.libcfaidx", "FastqFile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_FastqFile), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_9libcfaidx_FastqFile) __PYX_ERR(9, 73, __pyx_L1_error)
  __pyx_vtabptr_5pysam_9libcfaidx_FastqFile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_FastqFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_FastqFile->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_FastqFile)) __PYX_ERR(9, 73, __pyx_L1_error)
  __pyx_ptype_5pysam_9libcfaidx_Fastafile = __Pyx_ImportType(__pyx_t_1, "pysam.libcfaidx", "Fastafile", sizeof(struct __pyx_obj_5pysam_9libcfaidx_Fastafile), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_9libcfaidx_Fastafile) __PYX_ERR(9, 78, __pyx_L1_error)
  __pyx_vtabptr_5pysam_9libcfaidx_Fastafile = (struct __pyx_vtabstruct_5pysam_9libcfaidx_Fastafile*)__Pyx_GetVtable(__pyx_ptype_5pysam_9libcfaidx_Fastafile->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_9libcfaidx_Fastafile)) __PYX_ERR(9, 78, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule("pysam.libcalignmentfile"); if (unlikely(!__pyx_t_1)) __PYX_ERR(10, 41, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "AlignmentHeader", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentHeader), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_AlignmentHeader) __PYX_ERR(10, 41, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "AlignmentFile", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_AlignmentFile), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile) __PYX_ERR(10, 44, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_AlignmentFile = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_AlignmentFile*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_AlignmentFile->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_AlignmentFile)) __PYX_ERR(10, 44, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorRow = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRow", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRow), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRow) __PYX_ERR(10, 61, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowRegion", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowRegion), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion) __PYX_ERR(10, 71, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowRegion = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowRegion*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowRegion->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowRegion)) __PYX_ERR(10, 71, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowHead", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowHead), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead) __PYX_ERR(10, 77, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowHead = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowHead*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowHead->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowHead)) __PYX_ERR(10, 77, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowAll", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAll), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll) __PYX_ERR(10, 84, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowAll = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowAll*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAll->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowAll)) __PYX_ERR(10, 84, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowAllRefs", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowAllRefs), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowAllRefs) __PYX_ERR(10, 89, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorRowSelection", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorRowSelection), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection) __PYX_ERR(10, 94, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowSelection = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorRowSelection*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorRowSelection->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorRowSelection)) __PYX_ERR(10, 94, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumn", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumn), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn) __PYX_ERR(10, 101, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumn = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumn*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumn->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumn)) __PYX_ERR(10, 101, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumnRegion", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnRegion), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion) __PYX_ERR(10, 133, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnRegion = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnRegion*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnRegion->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnRegion)) __PYX_ERR(10, 133, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumnAllRefs", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAllRefs), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs) __PYX_ERR(10, 139, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAllRefs = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAllRefs*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAllRefs->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAllRefs)) __PYX_ERR(10, 139, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IteratorColumnAll", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IteratorColumnAll), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll) __PYX_ERR(10, 143, __pyx_L1_error)
  __pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAll = (struct __pyx_vtabstruct_5pysam_17libcalignmentfile_IteratorColumnAll*)__Pyx_GetVtable(__pyx_ptype_5pysam_17libcalignmentfile_IteratorColumnAll->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_17libcalignmentfile_IteratorColumnAll)) __PYX_ERR(10, 143, __pyx_L1_error)
  __pyx_ptype_5pysam_17libcalignmentfile_IndexedReads = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignmentfile", "IndexedReads", sizeof(struct __pyx_obj_5pysam_17libcalignmentfile_IndexedReads), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_17libcalignmentfile_IndexedReads) __PYX_ERR(10, 147, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = PyImport_ImportModule("pysam.libcalignedsegment"); if (unlikely(!__pyx_t_1)) __PYX_ERR(11, 34, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignedsegment", "AlignedSegment", sizeof(struct __pyx_obj_5pysam_18libcalignedsegment_AlignedSegment), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment) __PYX_ERR(11, 34, __pyx_L1_error)
  __pyx_vtabptr_5pysam_18libcalignedsegment_AlignedSegment = (struct __pyx_vtabstruct_5pysam_18libcalignedsegment_AlignedSegment*)__Pyx_GetVtable(__pyx_ptype_5pysam_18libcalignedsegment_AlignedSegment->tp_dict); if (unlikely(!__pyx_vtabptr_5pysam_18libcalignedsegment_AlignedSegment)) __PYX_ERR(11, 34, __pyx_L1_error)
  __pyx_ptype_5pysam_18libcalignedsegment_PileupColumn = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignedsegment", "PileupColumn", sizeof(struct __pyx_obj_5pysam_18libcalignedsegment_PileupColumn), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_18libcalignedsegment_PileupColumn) __PYX_ERR(11, 65, __pyx_L1_error)
  __pyx_ptype_5pysam_18libcalignedsegment_PileupRead = __Pyx_ImportType(__pyx_t_1, "pysam.libcalignedsegment", "PileupRead", sizeof(struct __pyx_obj_5pysam_18libcalignedsegment_PileupRead), __Pyx_ImportType_CheckSize_Warn);
   if (!__pyx_ptype_5pysam_18libcalignedsegment_PileupRead) __PYX_ERR(11, 75, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_RefNannyFinishContext();
  return 0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_RefNannyFinishContext();
  return -1;
}

static int __Pyx_modinit_variable_import_code(void) {
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("__Pyx_modinit_variable_import_code", 0);
  /*--- Variable import code ---*/
  __Pyx_RefNannyFinishContext();
  return 0;
}

static int __Pyx_modinit_function_import_code(void) {
  __Pyx_RefNannyDeclarations
  PyObject *__pyx_t_1 = NULL;
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannySetupContext("__Pyx_modinit_function_import_code", 0);
  /*--- Function import code ---*/
  __pyx_t_1 = PyImport_ImportModule("dysgu.map_set_utils"); if (!__pyx_t_1) __PYX_ERR(1, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (__Pyx_ImportFunction(__pyx_t_1, "clip_sizes", (void (**)(void))&__pyx_f_5dysgu_13map_set_utils_clip_sizes, "PyObject *(PyObject *)") < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  if (__Pyx_ImportFunction(__pyx_t_1, "clip_sizes_hard", (void (**)(void))&__pyx_f_5dysgu_13map_set_utils_clip_sizes_hard, "PyObject *(PyObject *)") < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  if (__Pyx_ImportFunction(__pyx_t_1, "cigar_clip", (void (**)(void))&__pyx_f_5dysgu_13map_set_utils_cigar_clip, "int (PyObject *, int)") < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  if (__Pyx_ImportFunction(__pyx_t_1, "is_reciprocal_overlapping", (void (**)(void))&__pyx_f_5dysgu_13map_set_utils_is_reciprocal_overlapping, "int (int, int, int, int)") < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  if (__Pyx_ImportFunction(__pyx_t_1, "span_position_distance", (void (**)(void))&__pyx_f_5dysgu_13map_set_utils_span_position_distance, "int (int, int, int, int, float, float, __pyx_t_5dysgu_13map_set_utils_ReadEnum_t, int, int, int, int)") < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_RefNannyFinishContext();
  return 0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_RefNannyFinishContext();
  return -1;
}


#ifndef CYTHON_NO_PYINIT_EXPORT
#define __Pyx_PyMODINIT_FUNC PyMODINIT_FUNC
#elif PY_MAJOR_VERSION < 3
#ifdef __cplusplus
#define __Pyx_PyMODINIT_FUNC extern "C" void
#else
#define __Pyx_PyMODINIT_FUNC void
#endif
#else
#ifdef __cplusplus
#define __Pyx_PyMODINIT_FUNC extern "C" PyObject *
#else
#define __Pyx_PyMODINIT_FUNC PyObject *
#endif
#endif


#if PY_MAJOR_VERSION < 3
__Pyx_PyMODINIT_FUNC initgraph(void) CYTHON_SMALL_CODE; /*proto*/
__Pyx_PyMODINIT_FUNC initgraph(void)
#else
__Pyx_PyMODINIT_FUNC PyInit_graph(void) CYTHON_SMALL_CODE; /*proto*/
__Pyx_PyMODINIT_FUNC PyInit_graph(void)
#if CYTHON_PEP489_MULTI_PHASE_INIT
{
  return PyModuleDef_Init(&__pyx_moduledef);
}
static CYTHON_SMALL_CODE int __Pyx_check_single_interpreter(void) {
    #if PY_VERSION_HEX >= 0x030700A1
    static PY_INT64_T main_interpreter_id = -1;
    PY_INT64_T current_id = PyInterpreterState_GetID(PyThreadState_Get()->interp);
    if (main_interpreter_id == -1) {
        main_interpreter_id = current_id;
        return (unlikely(current_id == -1)) ? -1 : 0;
    } else if (unlikely(main_interpreter_id != current_id))
    #else
    static PyInterpreterState *main_interpreter = NULL;
    PyInterpreterState *current_interpreter = PyThreadState_Get()->interp;
    if (!main_interpreter) {
        main_interpreter = current_interpreter;
    } else if (unlikely(main_interpreter != current_interpreter))
    #endif
    {
        PyErr_SetString(
            PyExc_ImportError,
            "Interpreter change detected - this module can only be loaded into one interpreter per process.");
        return -1;
    }
    return 0;
}
static CYTHON_SMALL_CODE int __Pyx_copy_spec_to_module(PyObject *spec, PyObject *moddict, const char* from_name, const char* to_name, int allow_none) {
    PyObject *value = PyObject_GetAttrString(spec, from_name);
    int result = 0;
    if (likely(value)) {
        if (allow_none || value != Py_None) {
            result = PyDict_SetItemString(moddict, to_name, value);
        }
        Py_DECREF(value);
    } else if (PyErr_ExceptionMatches(PyExc_AttributeError)) {
        PyErr_Clear();
    } else {
        result = -1;
    }
    return result;
}
static CYTHON_SMALL_CODE PyObject* __pyx_pymod_create(PyObject *spec, CYTHON_UNUSED PyModuleDef *def) {
    PyObject *module = NULL, *moddict, *modname;
    if (__Pyx_check_single_interpreter())
        return NULL;
    if (__pyx_m)
        return __Pyx_NewRef(__pyx_m);
    modname = PyObject_GetAttrString(spec, "name");
    if (unlikely(!modname)) goto bad;
    module = PyModule_NewObject(modname);
    Py_DECREF(modname);
    if (unlikely(!module)) goto bad;
    moddict = PyModule_GetDict(module);
    if (unlikely(!moddict)) goto bad;
    if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "loader", "__loader__", 1) < 0)) goto bad;
    if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "origin", "__file__", 1) < 0)) goto bad;
    if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "parent", "__package__", 1) < 0)) goto bad;
    if (unlikely(__Pyx_copy_spec_to_module(spec, moddict, "submodule_search_locations", "__path__", 0) < 0)) goto bad;
    return module;
bad:
    Py_XDECREF(module);
    return NULL;
}


static CYTHON_SMALL_CODE int __pyx_pymod_exec_graph(PyObject *__pyx_pyinit_module)
#endif
#endif
{
  PyObject *__pyx_t_1 = NULL;
  PyObject *__pyx_t_2 = NULL;
  static PyThread_type_lock __pyx_t_3[8];
  int __pyx_lineno = 0;
  const char *__pyx_filename = NULL;
  int __pyx_clineno = 0;
  __Pyx_RefNannyDeclarations
  #if CYTHON_PEP489_MULTI_PHASE_INIT
  if (__pyx_m) {
    if (__pyx_m == __pyx_pyinit_module) return 0;
    PyErr_SetString(PyExc_RuntimeError, "Module 'graph' has already been imported. Re-initialisation is not supported.");
    return -1;
  }
  #elif PY_MAJOR_VERSION >= 3
  if (__pyx_m) return __Pyx_NewRef(__pyx_m);
  #endif
  #if CYTHON_REFNANNY
__Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
if (!__Pyx_RefNanny) {
  PyErr_Clear();
  __Pyx_RefNanny = __Pyx_RefNannyImportAPI("Cython.Runtime.refnanny");
  if (!__Pyx_RefNanny)
      Py_FatalError("failed to import 'refnanny' module");
}
#endif
  __Pyx_RefNannySetupContext("__Pyx_PyMODINIT_FUNC PyInit_graph(void)", 0);
  if (__Pyx_check_binary_version() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #ifdef __Pxy_PyFrame_Initialize_Offsets
  __Pxy_PyFrame_Initialize_Offsets();
  #endif
  __pyx_empty_tuple = PyTuple_New(0); if (unlikely(!__pyx_empty_tuple)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_empty_bytes = PyBytes_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_bytes)) __PYX_ERR(1, 1, __pyx_L1_error)
  __pyx_empty_unicode = PyUnicode_FromStringAndSize("", 0); if (unlikely(!__pyx_empty_unicode)) __PYX_ERR(1, 1, __pyx_L1_error)
  #ifdef __Pyx_CyFunction_USED
  if (__pyx_CyFunction_init() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  #ifdef __Pyx_FusedFunction_USED
  if (__pyx_FusedFunction_init() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  #ifdef __Pyx_Coroutine_USED
  if (__pyx_Coroutine_init() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  #ifdef __Pyx_Generator_USED
  if (__pyx_Generator_init() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  #ifdef __Pyx_AsyncGen_USED
  if (__pyx_AsyncGen_init() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  #ifdef __Pyx_StopAsyncIteration_USED
  if (__pyx_StopAsyncIteration_init() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  /*--- Library function declarations ---*/
  /*--- Threads initialization code ---*/
  #if defined(WITH_THREAD) && PY_VERSION_HEX < 0x030700F0 && defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS
  PyEval_InitThreads();
  #endif
  /*--- Module creation code ---*/
  #if CYTHON_PEP489_MULTI_PHASE_INIT
  __pyx_m = __pyx_pyinit_module;
  Py_INCREF(__pyx_m);
  #else
  #if PY_MAJOR_VERSION < 3
  __pyx_m = Py_InitModule4("graph", __pyx_methods, 0, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m);
  #else
  __pyx_m = PyModule_Create(&__pyx_moduledef);
  #endif
  if (unlikely(!__pyx_m)) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(1, 1, __pyx_L1_error)
  Py_INCREF(__pyx_d);
  __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(1, 1, __pyx_L1_error)
  Py_INCREF(__pyx_b);
  __pyx_cython_runtime = PyImport_AddModule((char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(1, 1, __pyx_L1_error)
  Py_INCREF(__pyx_cython_runtime);
  if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  /*--- Initialize various global constants etc. ---*/
  if (__Pyx_InitGlobals() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
  if (__Pyx_init_sys_getdefaultencoding_params() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif
  if (__pyx_module_is_main_dysgu__graph) {
    if (PyObject_SetAttr(__pyx_m, __pyx_n_s_name_2, __pyx_n_s_main) < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  }
  #if PY_MAJOR_VERSION >= 3
  {
    PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(1, 1, __pyx_L1_error)
    if (!PyDict_GetItemString(modules, "dysgu.graph")) {
      if (unlikely(PyDict_SetItemString(modules, "dysgu.graph", __pyx_m) < 0)) __PYX_ERR(1, 1, __pyx_L1_error)
    }
  }
  #endif
  /*--- Builtin init code ---*/
  if (__Pyx_InitCachedBuiltins() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  /*--- Constants init code ---*/
  if (__Pyx_InitCachedConstants() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  /*--- Global type/function init code ---*/
  (void)__Pyx_modinit_global_init_code();
  (void)__Pyx_modinit_variable_export_code();
  (void)__Pyx_modinit_function_export_code();
  if (unlikely(__Pyx_modinit_type_init_code() < 0)) __PYX_ERR(1, 1, __pyx_L1_error)
  if (unlikely(__Pyx_modinit_type_import_code() < 0)) __PYX_ERR(1, 1, __pyx_L1_error)
  (void)__Pyx_modinit_variable_import_code();
  if (unlikely(__Pyx_modinit_function_import_code() < 0)) __PYX_ERR(1, 1, __pyx_L1_error)
  /*--- Execution code ---*/
  #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED)
  if (__Pyx_patch_abc() < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  #endif

  /* "dysgu/graph.pyx":4
 * 
 * from __future__ import absolute_import
 * import time             # <<<<<<<<<<<<<<
 * from collections import defaultdict, deque, namedtuple
 * import numpy as np
 */
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_time, 0, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 4, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_time, __pyx_t_1) < 0) __PYX_ERR(1, 4, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":5
 * from __future__ import absolute_import
 * import time
 * from collections import defaultdict, deque, namedtuple             # <<<<<<<<<<<<<<
 * import numpy as np
 * cimport numpy as np
 */
  __pyx_t_1 = PyList_New(3); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_n_s_defaultdict);
  __Pyx_GIVEREF(__pyx_n_s_defaultdict);
  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_defaultdict);
  __Pyx_INCREF(__pyx_n_s_deque);
  __Pyx_GIVEREF(__pyx_n_s_deque);
  PyList_SET_ITEM(__pyx_t_1, 1, __pyx_n_s_deque);
  __Pyx_INCREF(__pyx_n_s_namedtuple);
  __Pyx_GIVEREF(__pyx_n_s_namedtuple);
  PyList_SET_ITEM(__pyx_t_1, 2, __pyx_n_s_namedtuple);
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_collections, __pyx_t_1, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_defaultdict); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_defaultdict, __pyx_t_1) < 0) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_deque); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_deque, __pyx_t_1) < 0) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_namedtuple); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_namedtuple, __pyx_t_1) < 0) __PYX_ERR(1, 5, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":6
 * import time
 * from collections import defaultdict, deque, namedtuple
 * import numpy as np             # <<<<<<<<<<<<<<
 * cimport numpy as np
 * import sortedcontainers
 */
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_numpy, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 6, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_np, __pyx_t_2) < 0) __PYX_ERR(1, 6, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":8
 * import numpy as np
 * cimport numpy as np
 * import sortedcontainers             # <<<<<<<<<<<<<<
 * import cython
 * from cpython cimport array
 */
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_sortedcontainers, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 8, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_sortedcontainers, __pyx_t_2) < 0) __PYX_ERR(1, 8, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":11
 * import cython
 * from cpython cimport array
 * import array             # <<<<<<<<<<<<<<
 * import re
 * import logging
 */
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_array, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 11, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_array, __pyx_t_2) < 0) __PYX_ERR(1, 11, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":12
 * from cpython cimport array
 * import array
 * import re             # <<<<<<<<<<<<<<
 * import logging
 * 
 */
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_re, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 12, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_re, __pyx_t_2) < 0) __PYX_ERR(1, 12, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":13
 * import array
 * import re
 * import logging             # <<<<<<<<<<<<<<
 * 
 * from libcpp.vector cimport vector
 */
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_logging, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 13, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_logging, __pyx_t_2) < 0) __PYX_ERR(1, 13, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":34
 * 
 * from dysgu cimport map_set_utils
 * from dysgu.io_funcs import intersecter             # <<<<<<<<<<<<<<
 * from dysgu.map_set_utils cimport unordered_set, cigar_clip, clip_sizes_hard, is_reciprocal_overlapping, span_position_distance
 * from dysgu.map_set_utils cimport hash as xxhasher
 */
  __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 34, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_INCREF(__pyx_n_s_intersecter);
  __Pyx_GIVEREF(__pyx_n_s_intersecter);
  PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_intersecter);
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_dysgu_io_funcs, __pyx_t_2, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 34, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_1, __pyx_n_s_intersecter); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 34, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_intersecter, __pyx_t_2) < 0) __PYX_ERR(1, 34, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":38
 * from dysgu.map_set_utils cimport hash as xxhasher
 * from dysgu.map_set_utils cimport MinimizerTable
 * from dysgu.extra_metrics import BadClipCounter             # <<<<<<<<<<<<<<
 * 
 * from dysgu.map_set_utils import echo  # for debugging
 */
  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 38, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_INCREF(__pyx_n_s_BadClipCounter);
  __Pyx_GIVEREF(__pyx_n_s_BadClipCounter);
  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_BadClipCounter);
  __pyx_t_2 = __Pyx_Import(__pyx_n_s_dysgu_extra_metrics, __pyx_t_1, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 38, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_BadClipCounter); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 38, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_BadClipCounter, __pyx_t_1) < 0) __PYX_ERR(1, 38, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":40
 * from dysgu.extra_metrics import BadClipCounter
 * 
 * from dysgu.map_set_utils import echo  # for debugging             # <<<<<<<<<<<<<<
 * 
 * ctypedef cpp_pair[int, int] cpp_item
 */
  __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 40, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  __Pyx_INCREF(__pyx_n_s_echo);
  __Pyx_GIVEREF(__pyx_n_s_echo);
  PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_echo);
  __pyx_t_1 = __Pyx_Import(__pyx_n_s_dysgu_map_set_utils, __pyx_t_2, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 40, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_1, __pyx_n_s_echo); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 40, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_echo, __pyx_t_2) < 0) __PYX_ERR(1, 40, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1127
 * 
 * 
 * class SiteAdder:             # <<<<<<<<<<<<<<
 *     def __init__(self, sites):
 *         self.sites = {k: list(v) for k, v in sites.items()}
 */
  __pyx_t_1 = __Pyx_Py3MetaclassPrepare((PyObject *) NULL, __pyx_empty_tuple, __pyx_n_s_SiteAdder, __pyx_n_s_SiteAdder, (PyObject *) NULL, __pyx_n_s_dysgu_graph, (PyObject *) NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1127, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);

  /* "dysgu/graph.pyx":1128
 * 
 * class SiteAdder:
 *     def __init__(self, sites):             # <<<<<<<<<<<<<<
 *         self.sites = {k: list(v) for k, v in sites.items()}
 *         self.sites_queue = sites  # dict of deque's
 */
  __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_1__init__, 0, __pyx_n_s_SiteAdder___init, NULL, __pyx_n_s_dysgu_graph, __pyx_d, ((PyObject *)__pyx_codeobj__38)); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1128, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (__Pyx_SetNameInClass(__pyx_t_1, __pyx_n_s_init, __pyx_t_2) < 0) __PYX_ERR(1, 1128, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1142
 *         self.lookup = namedtuple("l", ["start"])
 * 
 *     def __contains__(self, item):             # <<<<<<<<<<<<<<
 *         if item in self.sites_index:
 *             return True
 */
  __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_3__contains__, 0, __pyx_n_s_SiteAdder___contains, NULL, __pyx_n_s_dysgu_graph, __pyx_d, ((PyObject *)__pyx_codeobj__40)); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1142, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (__Pyx_SetNameInClass(__pyx_t_1, __pyx_n_s_contains, __pyx_t_2) < 0) __PYX_ERR(1, 1142, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1146
 *             return True
 * 
 *     def __getitem__(self, item):             # <<<<<<<<<<<<<<
 *         return self.sites_index[item]
 * 
 */
  __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_5__getitem__, 0, __pyx_n_s_SiteAdder___getitem, NULL, __pyx_n_s_dysgu_graph, __pyx_d, ((PyObject *)__pyx_codeobj__42)); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1146, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (__Pyx_SetNameInClass(__pyx_t_1, __pyx_n_s_getitem, __pyx_t_2) < 0) __PYX_ERR(1, 1146, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1149
 *         return self.sites_index[item]
 * 
 *     def find_nearest_site(self, chrom, pos):             # <<<<<<<<<<<<<<
 *         # return -1
 *         # search backwards from current_index for closest --site to pos
 */
  __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_7find_nearest_site, 0, __pyx_n_s_SiteAdder_find_nearest_site, NULL, __pyx_n_s_dysgu_graph, __pyx_d, ((PyObject *)__pyx_codeobj__44)); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1149, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (__Pyx_SetNameInClass(__pyx_t_1, __pyx_n_s_find_nearest_site, __pyx_t_2) < 0) __PYX_ERR(1, 1149, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1186
 *             return -1
 * 
 *     def add_to_scope(self, site):             # <<<<<<<<<<<<<<
 *         if site.chrom == self.current_chrom:
 *             self.scope.add(site)
 */
  __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_9add_to_scope, 0, __pyx_n_s_SiteAdder_add_to_scope, NULL, __pyx_n_s_dysgu_graph, __pyx_d, ((PyObject *)__pyx_codeobj__46)); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1186, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (__Pyx_SetNameInClass(__pyx_t_1, __pyx_n_s_add_to_scope, __pyx_t_2) < 0) __PYX_ERR(1, 1186, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1193
 *             self.current_chrom = site.chrom
 * 
 *     def add_any_sites(self, int chrom, int pos, G, PairedEndScoper_t pe_scope, NodeToName node_to_name, cluster_dist):             # <<<<<<<<<<<<<<
 * 
 *         cdef int node_name, start, stop, file_index
 */
  __pyx_t_2 = __Pyx_CyFunction_New(&__pyx_mdef_5dysgu_5graph_9SiteAdder_11add_any_sites, 0, __pyx_n_s_SiteAdder_add_any_sites, NULL, __pyx_n_s_dysgu_graph, __pyx_d, ((PyObject *)__pyx_codeobj__48)); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1193, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (__Pyx_SetNameInClass(__pyx_t_1, __pyx_n_s_add_any_sites, __pyx_t_2) < 0) __PYX_ERR(1, 1193, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;

  /* "dysgu/graph.pyx":1127
 * 
 * 
 * class SiteAdder:             # <<<<<<<<<<<<<<
 *     def __init__(self, sites):
 *         self.sites = {k: list(v) for k, v in sites.items()}
 */
  __pyx_t_2 = __Pyx_Py3ClassCreate(((PyObject*)&__Pyx_DefaultClassType), __pyx_n_s_SiteAdder, __pyx_empty_tuple, __pyx_t_1, NULL, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 1127, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_2);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_SiteAdder, __pyx_t_2) < 0) __PYX_ERR(1, 1127, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "(tree fragment)":1
 * def __pyx_unpickle_TemplateEdges(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */
  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_5dysgu_5graph_7__pyx_unpickle_TemplateEdges, NULL, __pyx_n_s_dysgu_graph); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_TemplateEdges, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "(tree fragment)":11
 *         __pyx_unpickle_TemplateEdges__set_state(<TemplateEdges> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_TemplateEdges__set_state(TemplateEdges __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.templates_s = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 */
  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_5dysgu_5graph_9__pyx_unpickle_NodeName, NULL, __pyx_n_s_dysgu_graph); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_NodeName, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "dysgu/graph.pyx":1
 * #cython: language_level=3, boundscheck=False, c_string_type=unicode, c_string_encoding=utf8, infer_types=True             # <<<<<<<<<<<<<<
 * 
 * from __future__ import absolute_import
 */
  __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "View.MemoryView":210
 *         info.obj = self
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_array_getbuffer, "getbuffer(obj, view, flags)")             # <<<<<<<<<<<<<<
 * 
 *     def __dealloc__(array self):
 */
  __pyx_t_1 = __pyx_capsule_create(((void *)(&__pyx_array_getbuffer)), ((char *)"getbuffer(obj, view, flags)")); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 210, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem((PyObject *)__pyx_array_type->tp_dict, __pyx_n_s_pyx_getbuffer, __pyx_t_1) < 0) __PYX_ERR(0, 210, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  PyType_Modified(__pyx_array_type);

  /* "View.MemoryView":287
 *         return self.name
 * 
 * cdef generic = Enum("<strided and direct or indirect>")             # <<<<<<<<<<<<<<
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")
 */
  __pyx_t_1 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__53, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 287, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_XGOTREF(generic);
  __Pyx_DECREF_SET(generic, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":288
 * 
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default             # <<<<<<<<<<<<<<
 * cdef indirect = Enum("<strided and indirect>")
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__54, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 288, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_XGOTREF(strided);
  __Pyx_DECREF_SET(strided, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":289
 * cdef generic = Enum("<strided and direct or indirect>")
 * cdef strided = Enum("<strided and direct>") # default
 * cdef indirect = Enum("<strided and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__55, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 289, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_XGOTREF(indirect);
  __Pyx_DECREF_SET(indirect, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":292
 * 
 * 
 * cdef contiguous = Enum("<contiguous and direct>")             # <<<<<<<<<<<<<<
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__56, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 292, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_XGOTREF(contiguous);
  __Pyx_DECREF_SET(contiguous, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":293
 * 
 * cdef contiguous = Enum("<contiguous and direct>")
 * cdef indirect_contiguous = Enum("<contiguous and indirect>")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __Pyx_PyObject_Call(((PyObject *)__pyx_MemviewEnum_type), __pyx_tuple__57, NULL); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 293, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  __Pyx_XGOTREF(indirect_contiguous);
  __Pyx_DECREF_SET(indirect_contiguous, __pyx_t_1);
  __Pyx_GIVEREF(__pyx_t_1);
  __pyx_t_1 = 0;

  /* "View.MemoryView":317
 * 
 * DEF THREAD_LOCKS_PREALLOCATED = 8
 * cdef int __pyx_memoryview_thread_locks_used = 0             # <<<<<<<<<<<<<<
 * cdef PyThread_type_lock[THREAD_LOCKS_PREALLOCATED] __pyx_memoryview_thread_locks = [
 *     PyThread_allocate_lock(),
 */
  __pyx_memoryview_thread_locks_used = 0;

  /* "View.MemoryView":318
 * DEF THREAD_LOCKS_PREALLOCATED = 8
 * cdef int __pyx_memoryview_thread_locks_used = 0
 * cdef PyThread_type_lock[THREAD_LOCKS_PREALLOCATED] __pyx_memoryview_thread_locks = [             # <<<<<<<<<<<<<<
 *     PyThread_allocate_lock(),
 *     PyThread_allocate_lock(),
 */
  __pyx_t_3[0] = PyThread_allocate_lock();
  __pyx_t_3[1] = PyThread_allocate_lock();
  __pyx_t_3[2] = PyThread_allocate_lock();
  __pyx_t_3[3] = PyThread_allocate_lock();
  __pyx_t_3[4] = PyThread_allocate_lock();
  __pyx_t_3[5] = PyThread_allocate_lock();
  __pyx_t_3[6] = PyThread_allocate_lock();
  __pyx_t_3[7] = PyThread_allocate_lock();
  memcpy(&(__pyx_memoryview_thread_locks[0]), __pyx_t_3, sizeof(__pyx_memoryview_thread_locks[0]) * (8));

  /* "View.MemoryView":551
 *         info.obj = self
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __pyx_capsule_create(((void *)(&__pyx_memoryview_getbuffer)), ((char *)"getbuffer(obj, view, flags)")); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 551, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem((PyObject *)__pyx_memoryview_type->tp_dict, __pyx_n_s_pyx_getbuffer, __pyx_t_1) < 0) __PYX_ERR(0, 551, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  PyType_Modified(__pyx_memoryview_type);

  /* "View.MemoryView":997
 *         return self.from_object
 * 
 *     __pyx_getbuffer = capsule(<void *> &__pyx_memoryview_getbuffer, "getbuffer(obj, view, flags)")             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_t_1 = __pyx_capsule_create(((void *)(&__pyx_memoryview_getbuffer)), ((char *)"getbuffer(obj, view, flags)")); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 997, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem((PyObject *)__pyx_memoryviewslice_type->tp_dict, __pyx_n_s_pyx_getbuffer, __pyx_t_1) < 0) __PYX_ERR(0, 997, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
  PyType_Modified(__pyx_memoryviewslice_type);

  /* "(tree fragment)":1
 * def __pyx_unpickle_Enum(__pyx_type, long __pyx_checksum, __pyx_state):             # <<<<<<<<<<<<<<
 *     cdef object __pyx_PickleError
 *     cdef object __pyx_result
 */
  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_15View_dot_MemoryView_1__pyx_unpickle_Enum, NULL, __pyx_n_s_View_MemoryView); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_GOTREF(__pyx_t_1);
  if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_Enum, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;

  /* "(tree fragment)":11
 *         __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state)
 *     return __pyx_result
 * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state):             # <<<<<<<<<<<<<<
 *     __pyx_result.name = __pyx_state[0]
 *     if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'):
 */

  /*--- Wrapped vars code ---*/

  goto __pyx_L0;
  __pyx_L1_error:;
  __Pyx_XDECREF(__pyx_t_1);
  __Pyx_XDECREF(__pyx_t_2);
  if (__pyx_m) {
    if (__pyx_d) {
      __Pyx_AddTraceback("init dysgu.graph", __pyx_clineno, __pyx_lineno, __pyx_filename);
    }
    Py_CLEAR(__pyx_m);
  } else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_ImportError, "init dysgu.graph");
  }
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  #if CYTHON_PEP489_MULTI_PHASE_INIT
  return (__pyx_m != NULL) ? 0 : -1;
  #elif PY_MAJOR_VERSION >= 3
  return __pyx_m;
  #else
  return;
  #endif
}

/* --- Runtime support code --- */
/* Refnanny */
#if CYTHON_REFNANNY
static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) {
    PyObject *m = NULL, *p = NULL;
    void *r = NULL;
    m = PyImport_ImportModule(modname);
    if (!m) goto end;
    p = PyObject_GetAttrString(m, "RefNannyAPI");
    if (!p) goto end;
    r = PyLong_AsVoidPtr(p);
end:
    Py_XDECREF(p);
    Py_XDECREF(m);
    return (__Pyx_RefNannyAPIStruct *)r;
}
#endif

/* PyObjectGetAttrStr */
#if CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
    PyTypeObject* tp = Py_TYPE(obj);
    if (likely(tp->tp_getattro))
        return tp->tp_getattro(obj, attr_name);
#if PY_MAJOR_VERSION < 3
    if (likely(tp->tp_getattr))
        return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
#endif
    return PyObject_GetAttr(obj, attr_name);
}
#endif

/* GetBuiltinName */
static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
    PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name);
    if (unlikely(!result)) {
        PyErr_Format(PyExc_NameError,
#if PY_MAJOR_VERSION >= 3
            "name '%U' is not defined", name);
#else
            "name '%.200s' is not defined", PyString_AS_STRING(name));
#endif
    }
    return result;
}

/* PyCFunctionFastCall */
#if CYTHON_FAST_PYCCALL
static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) {
    PyCFunctionObject *func = (PyCFunctionObject*)func_obj;
    PyCFunction meth = PyCFunction_GET_FUNCTION(func);
    PyObject *self = PyCFunction_GET_SELF(func);
    int flags = PyCFunction_GET_FLAGS(func);
    assert(PyCFunction_Check(func));
    assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)));
    assert(nargs >= 0);
    assert(nargs == 0 || args != NULL);
    /* _PyCFunction_FastCallDict() must not be called with an exception set,
       because it may clear it (directly or indirectly) and so the
       caller loses its exception */
    assert(!PyErr_Occurred());
    if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) {
        return (*((__Pyx_PyCFunctionFastWithKeywords)(void*)meth)) (self, args, nargs, NULL);
    } else {
        return (*((__Pyx_PyCFunctionFast)(void*)meth)) (self, args, nargs);
    }
}
#endif

/* PyFunctionFastCall */
#if CYTHON_FAST_PYCALL
static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
                                               PyObject *globals) {
    PyFrameObject *f;
    PyThreadState *tstate = __Pyx_PyThreadState_Current;
    PyObject **fastlocals;
    Py_ssize_t i;
    PyObject *result;
    assert(globals != NULL);
    /* XXX Perhaps we should create a specialized
       PyFrame_New() that doesn't take locals, but does
       take builtins without sanity checking them.
       */
    assert(tstate != NULL);
    f = PyFrame_New(tstate, co, globals, NULL);
    if (f == NULL) {
        return NULL;
    }
    fastlocals = __Pyx_PyFrame_GetLocalsplus(f);
    for (i = 0; i < na; i++) {
        Py_INCREF(*args);
        fastlocals[i] = *args++;
    }
    result = PyEval_EvalFrameEx(f,0);
    ++tstate->recursion_depth;
    Py_DECREF(f);
    --tstate->recursion_depth;
    return result;
}
#if 1 || PY_VERSION_HEX < 0x030600B1
static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) {
    PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
    PyObject *globals = PyFunction_GET_GLOBALS(func);
    PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
    PyObject *closure;
#if PY_MAJOR_VERSION >= 3
    PyObject *kwdefs;
#endif
    PyObject *kwtuple, **k;
    PyObject **d;
    Py_ssize_t nd;
    Py_ssize_t nk;
    PyObject *result;
    assert(kwargs == NULL || PyDict_Check(kwargs));
    nk = kwargs ? PyDict_Size(kwargs) : 0;
    if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
        return NULL;
    }
    if (
#if PY_MAJOR_VERSION >= 3
            co->co_kwonlyargcount == 0 &&
#endif
            likely(kwargs == NULL || nk == 0) &&
            co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
        if (argdefs == NULL && co->co_argcount == nargs) {
            result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
            goto done;
        }
        else if (nargs == 0 && argdefs != NULL
                 && co->co_argcount == Py_SIZE(argdefs)) {
            /* function called with no arguments, but all parameters have
               a default value: use default values as arguments .*/
            args = &PyTuple_GET_ITEM(argdefs, 0);
            result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
            goto done;
        }
    }
    if (kwargs != NULL) {
        Py_ssize_t pos, i;
        kwtuple = PyTuple_New(2 * nk);
        if (kwtuple == NULL) {
            result = NULL;
            goto done;
        }
        k = &PyTuple_GET_ITEM(kwtuple, 0);
        pos = i = 0;
        while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
            Py_INCREF(k[i]);
            Py_INCREF(k[i+1]);
            i += 2;
        }
        nk = i / 2;
    }
    else {
        kwtuple = NULL;
        k = NULL;
    }
    closure = PyFunction_GET_CLOSURE(func);
#if PY_MAJOR_VERSION >= 3
    kwdefs = PyFunction_GET_KW_DEFAULTS(func);
#endif
    if (argdefs != NULL) {
        d = &PyTuple_GET_ITEM(argdefs, 0);
        nd = Py_SIZE(argdefs);
    }
    else {
        d = NULL;
        nd = 0;
    }
#if PY_MAJOR_VERSION >= 3
    result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
                               args, (int)nargs,
                               k, (int)nk,
                               d, (int)nd, kwdefs, closure);
#else
    result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
                               args, (int)nargs,
                               k, (int)nk,
                               d, (int)nd, closure);
#endif
    Py_XDECREF(kwtuple);
done:
    Py_LeaveRecursiveCall();
    return result;
}
#endif
#endif

/* PyObjectCall */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
    PyObject *result;
    ternaryfunc call = Py_TYPE(func)->tp_call;
    if (unlikely(!call))
        return PyObject_Call(func, arg, kw);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = (*call)(func, arg, kw);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

/* PyObjectCallMethO */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
    PyObject *self, *result;
    PyCFunction cfunc;
    cfunc = PyCFunction_GET_FUNCTION(func);
    self = PyCFunction_GET_SELF(func);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = cfunc(self, arg);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

/* PyObjectCallOneArg */
#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_New(1);
    if (unlikely(!args)) return NULL;
    Py_INCREF(arg);
    PyTuple_SET_ITEM(args, 0, arg);
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
#if CYTHON_FAST_PYCALL
    if (PyFunction_Check(func)) {
        return __Pyx_PyFunction_FastCall(func, &arg, 1);
    }
#endif
    if (likely(PyCFunction_Check(func))) {
        if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
            return __Pyx_PyObject_CallMethO(func, arg);
#if CYTHON_FAST_PYCCALL
        } else if (__Pyx_PyFastCFunction_Check(func)) {
            return __Pyx_PyCFunction_FastCall(func, &arg, 1);
#endif
        }
    }
    return __Pyx__PyObject_CallOneArg(func, arg);
}
#else
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_Pack(1, arg);
    if (unlikely(!args)) return NULL;
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
#endif

/* PyErrFetchRestore */
#if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    tmp_type = tstate->curexc_type;
    tmp_value = tstate->curexc_value;
    tmp_tb = tstate->curexc_traceback;
    tstate->curexc_type = type;
    tstate->curexc_value = value;
    tstate->curexc_traceback = tb;
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
}
static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
    *type = tstate->curexc_type;
    *value = tstate->curexc_value;
    *tb = tstate->curexc_traceback;
    tstate->curexc_type = 0;
    tstate->curexc_value = 0;
    tstate->curexc_traceback = 0;
}
#endif

/* WriteUnraisableException */
static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
                                  CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename,
                                  int full_traceback, CYTHON_UNUSED int nogil) {
    PyObject *old_exc, *old_val, *old_tb;
    PyObject *ctx;
    __Pyx_PyThreadState_declare
#ifdef WITH_THREAD
    PyGILState_STATE state;
    if (nogil)
        state = PyGILState_Ensure();
    else state = (PyGILState_STATE)0;
#endif
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
    if (full_traceback) {
        Py_XINCREF(old_exc);
        Py_XINCREF(old_val);
        Py_XINCREF(old_tb);
        __Pyx_ErrRestore(old_exc, old_val, old_tb);
        PyErr_PrintEx(1);
    }
    #if PY_MAJOR_VERSION < 3
    ctx = PyString_FromString(name);
    #else
    ctx = PyUnicode_FromString(name);
    #endif
    __Pyx_ErrRestore(old_exc, old_val, old_tb);
    if (!ctx) {
        PyErr_WriteUnraisable(Py_None);
    } else {
        PyErr_WriteUnraisable(ctx);
        Py_DECREF(ctx);
    }
#ifdef WITH_THREAD
    if (nogil)
        PyGILState_Release(state);
#endif
}

/* PyUnicode_Substring */
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_Substring(
            PyObject* text, Py_ssize_t start, Py_ssize_t stop) {
    Py_ssize_t length;
    if (unlikely(__Pyx_PyUnicode_READY(text) == -1)) return NULL;
    length = __Pyx_PyUnicode_GET_LENGTH(text);
    if (start < 0) {
        start += length;
        if (start < 0)
            start = 0;
    }
    if (stop < 0)
        stop += length;
    else if (stop > length)
        stop = length;
    if (stop <= start)
        return __Pyx_NewRef(__pyx_empty_unicode);
#if CYTHON_PEP393_ENABLED
    return PyUnicode_FromKindAndData(PyUnicode_KIND(text),
        PyUnicode_1BYTE_DATA(text) + start*PyUnicode_KIND(text), stop-start);
#else
    return PyUnicode_FromUnicode(PyUnicode_AS_UNICODE(text)+start, stop-start);
#endif
}

/* RaiseArgTupleInvalid */
static void __Pyx_RaiseArgtupleInvalid(
    const char* func_name,
    int exact,
    Py_ssize_t num_min,
    Py_ssize_t num_max,
    Py_ssize_t num_found)
{
    Py_ssize_t num_expected;
    const char *more_or_less;
    if (num_found < num_min) {
        num_expected = num_min;
        more_or_less = "at least";
    } else {
        num_expected = num_max;
        more_or_less = "at most";
    }
    if (exact) {
        more_or_less = "exactly";
    }
    PyErr_Format(PyExc_TypeError,
                 "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
                 func_name, more_or_less, num_expected,
                 (num_expected == 1) ? "" : "s", num_found);
}

/* RaiseDoubleKeywords */
static void __Pyx_RaiseDoubleKeywordsError(
    const char* func_name,
    PyObject* kw_name)
{
    PyErr_Format(PyExc_TypeError,
        #if PY_MAJOR_VERSION >= 3
        "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
        #else
        "%s() got multiple values for keyword argument '%s'", func_name,
        PyString_AsString(kw_name));
        #endif
}

/* ParseKeywords */
static int __Pyx_ParseOptionalKeywords(
    PyObject *kwds,
    PyObject **argnames[],
    PyObject *kwds2,
    PyObject *values[],
    Py_ssize_t num_pos_args,
    const char* function_name)
{
    PyObject *key = 0, *value = 0;
    Py_ssize_t pos = 0;
    PyObject*** name;
    PyObject*** first_kw_arg = argnames + num_pos_args;
    while (PyDict_Next(kwds, &pos, &key, &value)) {
        name = first_kw_arg;
        while (*name && (**name != key)) name++;
        if (*name) {
            values[name-argnames] = value;
            continue;
        }
        name = first_kw_arg;
        #if PY_MAJOR_VERSION < 3
        if (likely(PyString_Check(key))) {
            while (*name) {
                if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
                        && _PyString_Eq(**name, key)) {
                    values[name-argnames] = value;
                    break;
                }
                name++;
            }
            if (*name) continue;
            else {
                PyObject*** argname = argnames;
                while (argname != first_kw_arg) {
                    if ((**argname == key) || (
                            (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
                             && _PyString_Eq(**argname, key))) {
                        goto arg_passed_twice;
                    }
                    argname++;
                }
            }
        } else
        #endif
        if (likely(PyUnicode_Check(key))) {
            while (*name) {
                int cmp = (**name == key) ? 0 :
                #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
                    (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 :
                #endif
                    PyUnicode_Compare(**name, key);
                if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
                if (cmp == 0) {
                    values[name-argnames] = value;
                    break;
                }
                name++;
            }
            if (*name) continue;
            else {
                PyObject*** argname = argnames;
                while (argname != first_kw_arg) {
                    int cmp = (**argname == key) ? 0 :
                    #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
                        (__Pyx_PyUnicode_GET_LENGTH(**argname) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 :
                    #endif
                        PyUnicode_Compare(**argname, key);
                    if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
                    if (cmp == 0) goto arg_passed_twice;
                    argname++;
                }
            }
        } else
            goto invalid_keyword_type;
        if (kwds2) {
            if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
        } else {
            goto invalid_keyword;
        }
    }
    return 0;
arg_passed_twice:
    __Pyx_RaiseDoubleKeywordsError(function_name, key);
    goto bad;
invalid_keyword_type:
    PyErr_Format(PyExc_TypeError,
        "%.200s() keywords must be strings", function_name);
    goto bad;
invalid_keyword:
    PyErr_Format(PyExc_TypeError,
    #if PY_MAJOR_VERSION < 3
        "%.200s() got an unexpected keyword argument '%.200s'",
        function_name, PyString_AsString(key));
    #else
        "%s() got an unexpected keyword argument '%U'",
        function_name, key);
    #endif
bad:
    return -1;
}

/* PyDictVersioning */
#if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) {
    PyObject *dict = Py_TYPE(obj)->tp_dict;
    return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0;
}
static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) {
    PyObject **dictptr = NULL;
    Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset;
    if (offset) {
#if CYTHON_COMPILING_IN_CPYTHON
        dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj);
#else
        dictptr = _PyObject_GetDictPtr(obj);
#endif
    }
    return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0;
}
static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) {
    PyObject *dict = Py_TYPE(obj)->tp_dict;
    if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict)))
        return 0;
    return obj_dict_version == __Pyx_get_object_dict_version(obj);
}
#endif

/* GetModuleGlobalName */
#if CYTHON_USE_DICT_VERSIONS
static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value)
#else
static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
#endif
{
    PyObject *result;
#if !CYTHON_AVOID_BORROWED_REFS
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
    result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash);
    __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
    if (likely(result)) {
        return __Pyx_NewRef(result);
    } else if (unlikely(PyErr_Occurred())) {
        return NULL;
    }
#else
    result = PyDict_GetItem(__pyx_d, name);
    __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
    if (likely(result)) {
        return __Pyx_NewRef(result);
    }
#endif
#else
    result = PyObject_GetItem(__pyx_d, name);
    __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
    if (likely(result)) {
        return __Pyx_NewRef(result);
    }
    PyErr_Clear();
#endif
    return __Pyx_GetBuiltinName(name);
}

/* PyObjectCall2Args */
static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) {
    PyObject *args, *result = NULL;
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(function)) {
        PyObject *args[2] = {arg1, arg2};
        return __Pyx_PyFunction_FastCall(function, args, 2);
    }
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(function)) {
        PyObject *args[2] = {arg1, arg2};
        return __Pyx_PyCFunction_FastCall(function, args, 2);
    }
    #endif
    args = PyTuple_New(2);
    if (unlikely(!args)) goto done;
    Py_INCREF(arg1);
    PyTuple_SET_ITEM(args, 0, arg1);
    Py_INCREF(arg2);
    PyTuple_SET_ITEM(args, 1, arg2);
    Py_INCREF(function);
    result = __Pyx_PyObject_Call(function, args, NULL);
    Py_DECREF(args);
    Py_DECREF(function);
done:
    return result;
}

/* PyIntBinop */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
    (void)inplace;
    (void)zerodivision_check;
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long x;
        long a = PyInt_AS_LONG(op1);
            x = (long)((unsigned long)a + b);
            if (likely((x^a) >= 0 || (x^b) >= 0))
                return PyInt_FromLong(x);
            return PyLong_Type.tp_as_number->nb_add(op1, op2);
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        const long b = intval;
        long a, x;
#ifdef HAVE_LONG_LONG
        const PY_LONG_LONG llb = intval;
        PY_LONG_LONG lla, llx;
#endif
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        const Py_ssize_t size = Py_SIZE(op1);
        if (likely(__Pyx_sst_abs(size) <= 1)) {
            a = likely(size) ? digits[0] : 0;
            if (size == -1) a = -a;
        } else {
            switch (size) {
                case -2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                default: return PyLong_Type.tp_as_number->nb_add(op1, op2);
            }
        }
                x = a + b;
            return PyLong_FromLong(x);
#ifdef HAVE_LONG_LONG
        long_long:
                llx = lla + llb;
            return PyLong_FromLongLong(llx);
#endif
        
        
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
            double result;
            PyFPE_START_PROTECT("add", return NULL)
            result = ((double)a) + (double)b;
            PyFPE_END_PROTECT(result)
            return PyFloat_FromDouble(result);
    }
    return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2);
}
#endif

/* GetItemInt */
static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
    PyObject *r;
    if (!j) return NULL;
    r = PyObject_GetItem(o, j);
    Py_DECREF(j);
    return r;
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
                                                              CYTHON_NCP_UNUSED int wraparound,
                                                              CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    Py_ssize_t wrapped_i = i;
    if (wraparound & unlikely(i < 0)) {
        wrapped_i += PyList_GET_SIZE(o);
    }
    if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) {
        PyObject *r = PyList_GET_ITEM(o, wrapped_i);
        Py_INCREF(r);
        return r;
    }
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
#else
    return PySequence_GetItem(o, i);
#endif
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
                                                              CYTHON_NCP_UNUSED int wraparound,
                                                              CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    Py_ssize_t wrapped_i = i;
    if (wraparound & unlikely(i < 0)) {
        wrapped_i += PyTuple_GET_SIZE(o);
    }
    if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) {
        PyObject *r = PyTuple_GET_ITEM(o, wrapped_i);
        Py_INCREF(r);
        return r;
    }
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
#else
    return PySequence_GetItem(o, i);
#endif
}
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
                                                     CYTHON_NCP_UNUSED int wraparound,
                                                     CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
    if (is_list || PyList_CheckExact(o)) {
        Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
        if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) {
            PyObject *r = PyList_GET_ITEM(o, n);
            Py_INCREF(r);
            return r;
        }
    }
    else if (PyTuple_CheckExact(o)) {
        Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
        if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) {
            PyObject *r = PyTuple_GET_ITEM(o, n);
            Py_INCREF(r);
            return r;
        }
    } else {
        PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
        if (likely(m && m->sq_item)) {
            if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
                Py_ssize_t l = m->sq_length(o);
                if (likely(l >= 0)) {
                    i += l;
                } else {
                    if (!PyErr_ExceptionMatches(PyExc_OverflowError))
                        return NULL;
                    PyErr_Clear();
                }
            }
            return m->sq_item(o, i);
        }
    }
#else
    if (is_list || PySequence_Check(o)) {
        return PySequence_GetItem(o, i);
    }
#endif
    return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
}

/* SetItemInt */
static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v) {
    int r;
    if (!j) return -1;
    r = PyObject_SetItem(o, j, v);
    Py_DECREF(j);
    return r;
}
static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, int is_list,
                                               CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) {
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
    if (is_list || PyList_CheckExact(o)) {
        Py_ssize_t n = (!wraparound) ? i : ((likely(i >= 0)) ? i : i + PyList_GET_SIZE(o));
        if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o)))) {
            PyObject* old = PyList_GET_ITEM(o, n);
            Py_INCREF(v);
            PyList_SET_ITEM(o, n, v);
            Py_DECREF(old);
            return 1;
        }
    } else {
        PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
        if (likely(m && m->sq_ass_item)) {
            if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
                Py_ssize_t l = m->sq_length(o);
                if (likely(l >= 0)) {
                    i += l;
                } else {
                    if (!PyErr_ExceptionMatches(PyExc_OverflowError))
                        return -1;
                    PyErr_Clear();
                }
            }
            return m->sq_ass_item(o, i, v);
        }
    }
#else
#if CYTHON_COMPILING_IN_PYPY
    if (is_list || (PySequence_Check(o) && !PyDict_Check(o)))
#else
    if (is_list || PySequence_Check(o))
#endif
    {
        return PySequence_SetItem(o, i, v);
    }
#endif
    return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v);
}

/* RaiseTooManyValuesToUnpack */
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
    PyErr_Format(PyExc_ValueError,
                 "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
}

/* RaiseNeedMoreValuesToUnpack */
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
    PyErr_Format(PyExc_ValueError,
                 "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
                 index, (index == 1) ? "" : "s");
}

/* RaiseNoneIterError */
static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
}

/* RaiseException */
#if PY_MAJOR_VERSION < 3
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
                        CYTHON_UNUSED PyObject *cause) {
    __Pyx_PyThreadState_declare
    Py_XINCREF(type);
    if (!value || value == Py_None)
        value = NULL;
    else
        Py_INCREF(value);
    if (!tb || tb == Py_None)
        tb = NULL;
    else {
        Py_INCREF(tb);
        if (!PyTraceBack_Check(tb)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: arg 3 must be a traceback or None");
            goto raise_error;
        }
    }
    if (PyType_Check(type)) {
#if CYTHON_COMPILING_IN_PYPY
        if (!value) {
            Py_INCREF(Py_None);
            value = Py_None;
        }
#endif
        PyErr_NormalizeException(&type, &value, &tb);
    } else {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto raise_error;
        }
        value = type;
        type = (PyObject*) Py_TYPE(type);
        Py_INCREF(type);
        if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: exception class must be a subclass of BaseException");
            goto raise_error;
        }
    }
    __Pyx_PyThreadState_assign
    __Pyx_ErrRestore(type, value, tb);
    return;
raise_error:
    Py_XDECREF(value);
    Py_XDECREF(type);
    Py_XDECREF(tb);
    return;
}
#else
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
    PyObject* owned_instance = NULL;
    if (tb == Py_None) {
        tb = 0;
    } else if (tb && !PyTraceBack_Check(tb)) {
        PyErr_SetString(PyExc_TypeError,
            "raise: arg 3 must be a traceback or None");
        goto bad;
    }
    if (value == Py_None)
        value = 0;
    if (PyExceptionInstance_Check(type)) {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto bad;
        }
        value = type;
        type = (PyObject*) Py_TYPE(value);
    } else if (PyExceptionClass_Check(type)) {
        PyObject *instance_class = NULL;
        if (value && PyExceptionInstance_Check(value)) {
            instance_class = (PyObject*) Py_TYPE(value);
            if (instance_class != type) {
                int is_subclass = PyObject_IsSubclass(instance_class, type);
                if (!is_subclass) {
                    instance_class = NULL;
                } else if (unlikely(is_subclass == -1)) {
                    goto bad;
                } else {
                    type = instance_class;
                }
            }
        }
        if (!instance_class) {
            PyObject *args;
            if (!value)
                args = PyTuple_New(0);
            else if (PyTuple_Check(value)) {
                Py_INCREF(value);
                args = value;
            } else
                args = PyTuple_Pack(1, value);
            if (!args)
                goto bad;
            owned_instance = PyObject_Call(type, args, NULL);
            Py_DECREF(args);
            if (!owned_instance)
                goto bad;
            value = owned_instance;
            if (!PyExceptionInstance_Check(value)) {
                PyErr_Format(PyExc_TypeError,
                             "calling %R should have returned an instance of "
                             "BaseException, not %R",
                             type, Py_TYPE(value));
                goto bad;
            }
        }
    } else {
        PyErr_SetString(PyExc_TypeError,
            "raise: exception class must be a subclass of BaseException");
        goto bad;
    }
    if (cause) {
        PyObject *fixed_cause;
        if (cause == Py_None) {
            fixed_cause = NULL;
        } else if (PyExceptionClass_Check(cause)) {
            fixed_cause = PyObject_CallObject(cause, NULL);
            if (fixed_cause == NULL)
                goto bad;
        } else if (PyExceptionInstance_Check(cause)) {
            fixed_cause = cause;
            Py_INCREF(fixed_cause);
        } else {
            PyErr_SetString(PyExc_TypeError,
                            "exception causes must derive from "
                            "BaseException");
            goto bad;
        }
        PyException_SetCause(value, fixed_cause);
    }
    PyErr_SetObject(type, value);
    if (tb) {
#if CYTHON_COMPILING_IN_PYPY
        PyObject *tmp_type, *tmp_value, *tmp_tb;
        PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
        Py_INCREF(tb);
        PyErr_Restore(tmp_type, tmp_value, tb);
        Py_XDECREF(tmp_tb);
#else
        PyThreadState *tstate = __Pyx_PyThreadState_Current;
        PyObject* tmp_tb = tstate->curexc_traceback;
        if (tb != tmp_tb) {
            Py_INCREF(tb);
            tstate->curexc_traceback = tb;
            Py_XDECREF(tmp_tb);
        }
#endif
    }
bad:
    Py_XDECREF(owned_instance);
    return;
}
#endif

/* KeywordStringCheck */
static int __Pyx_CheckKeywordStrings(
    PyObject *kwdict,
    const char* function_name,
    int kw_allowed)
{
    PyObject* key = 0;
    Py_ssize_t pos = 0;
#if CYTHON_COMPILING_IN_PYPY
    if (!kw_allowed && PyDict_Next(kwdict, &pos, &key, 0))
        goto invalid_keyword;
    return 1;
#else
    while (PyDict_Next(kwdict, &pos, &key, 0)) {
        #if PY_MAJOR_VERSION < 3
        if (unlikely(!PyString_Check(key)))
        #endif
            if (unlikely(!PyUnicode_Check(key)))
                goto invalid_keyword_type;
    }
    if ((!kw_allowed) && unlikely(key))
        goto invalid_keyword;
    return 1;
invalid_keyword_type:
    PyErr_Format(PyExc_TypeError,
        "%.200s() keywords must be strings", function_name);
    return 0;
#endif
invalid_keyword:
    PyErr_Format(PyExc_TypeError,
    #if PY_MAJOR_VERSION < 3
        "%.200s() got an unexpected keyword argument '%.200s'",
        function_name, PyString_AsString(key));
    #else
        "%s() got an unexpected keyword argument '%U'",
        function_name, key);
    #endif
    return 0;
}

/* PyErrExceptionMatches */
#if CYTHON_FAST_THREAD_STATE
static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
    Py_ssize_t i, n;
    n = PyTuple_GET_SIZE(tuple);
#if PY_MAJOR_VERSION >= 3
    for (i=0; i<n; i++) {
        if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
    }
#endif
    for (i=0; i<n; i++) {
        if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1;
    }
    return 0;
}
static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
    PyObject *exc_type = tstate->curexc_type;
    if (exc_type == err) return 1;
    if (unlikely(!exc_type)) return 0;
    if (unlikely(PyTuple_Check(err)))
        return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err);
    return __Pyx_PyErr_GivenExceptionMatches(exc_type, err);
}
#endif

/* GetAttr */
static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) {
#if CYTHON_USE_TYPE_SLOTS
#if PY_MAJOR_VERSION >= 3
    if (likely(PyUnicode_Check(n)))
#else
    if (likely(PyString_Check(n)))
#endif
        return __Pyx_PyObject_GetAttrStr(o, n);
#endif
    return PyObject_GetAttr(o, n);
}

/* GetAttr3 */
static PyObject *__Pyx_GetAttr3Default(PyObject *d) {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
        return NULL;
    __Pyx_PyErr_Clear();
    Py_INCREF(d);
    return d;
}
static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) {
    PyObject *r = __Pyx_GetAttr(o, n);
    return (likely(r)) ? r : __Pyx_GetAttr3Default(d);
}

/* SliceObject */
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj,
        Py_ssize_t cstart, Py_ssize_t cstop,
        PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice,
        int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) {
#if CYTHON_USE_TYPE_SLOTS
    PyMappingMethods* mp;
#if PY_MAJOR_VERSION < 3
    PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence;
    if (likely(ms && ms->sq_slice)) {
        if (!has_cstart) {
            if (_py_start && (*_py_start != Py_None)) {
                cstart = __Pyx_PyIndex_AsSsize_t(*_py_start);
                if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
            } else
                cstart = 0;
        }
        if (!has_cstop) {
            if (_py_stop && (*_py_stop != Py_None)) {
                cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop);
                if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
            } else
                cstop = PY_SSIZE_T_MAX;
        }
        if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) {
            Py_ssize_t l = ms->sq_length(obj);
            if (likely(l >= 0)) {
                if (cstop < 0) {
                    cstop += l;
                    if (cstop < 0) cstop = 0;
                }
                if (cstart < 0) {
                    cstart += l;
                    if (cstart < 0) cstart = 0;
                }
            } else {
                if (!PyErr_ExceptionMatches(PyExc_OverflowError))
                    goto bad;
                PyErr_Clear();
            }
        }
        return ms->sq_slice(obj, cstart, cstop);
    }
#endif
    mp = Py_TYPE(obj)->tp_as_mapping;
    if (likely(mp && mp->mp_subscript))
#endif
    {
        PyObject* result;
        PyObject *py_slice, *py_start, *py_stop;
        if (_py_slice) {
            py_slice = *_py_slice;
        } else {
            PyObject* owned_start = NULL;
            PyObject* owned_stop = NULL;
            if (_py_start) {
                py_start = *_py_start;
            } else {
                if (has_cstart) {
                    owned_start = py_start = PyInt_FromSsize_t(cstart);
                    if (unlikely(!py_start)) goto bad;
                } else
                    py_start = Py_None;
            }
            if (_py_stop) {
                py_stop = *_py_stop;
            } else {
                if (has_cstop) {
                    owned_stop = py_stop = PyInt_FromSsize_t(cstop);
                    if (unlikely(!py_stop)) {
                        Py_XDECREF(owned_start);
                        goto bad;
                    }
                } else
                    py_stop = Py_None;
            }
            py_slice = PySlice_New(py_start, py_stop, Py_None);
            Py_XDECREF(owned_start);
            Py_XDECREF(owned_stop);
            if (unlikely(!py_slice)) goto bad;
        }
#if CYTHON_USE_TYPE_SLOTS
        result = mp->mp_subscript(obj, py_slice);
#else
        result = PyObject_GetItem(obj, py_slice);
#endif
        if (!_py_slice) {
            Py_DECREF(py_slice);
        }
        return result;
    }
    PyErr_Format(PyExc_TypeError,
        "'%.200s' object is unsliceable", Py_TYPE(obj)->tp_name);
bad:
    return NULL;
}

/* PyIntBinop */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_AndObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
    (void)inplace;
    (void)zerodivision_check;
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long a = PyInt_AS_LONG(op1);
            return PyInt_FromLong(a & b);
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        const long b = intval;
        long a, x;
#ifdef HAVE_LONG_LONG
        const PY_LONG_LONG llb = intval;
        PY_LONG_LONG lla, llx;
#endif
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        const Py_ssize_t size = Py_SIZE(op1);
        if (likely(__Pyx_sst_abs(size) <= 1)) {
            a = likely(size) ? digits[0] : 0;
            if (size == -1) a = -a;
        } else {
            switch (size) {
                case -2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                default: return PyLong_Type.tp_as_number->nb_and(op1, op2);
            }
        }
                x = a & b;
            return PyLong_FromLong(x);
#ifdef HAVE_LONG_LONG
        long_long:
                llx = lla & llb;
            return PyLong_FromLongLong(llx);
#endif
        
        
    }
    #endif
    return (inplace ? PyNumber_InPlaceAnd : PyNumber_And)(op1, op2);
}
#endif

/* IterFinish */
static CYTHON_INLINE int __Pyx_IterFinish(void) {
#if CYTHON_FAST_THREAD_STATE
    PyThreadState *tstate = __Pyx_PyThreadState_Current;
    PyObject* exc_type = tstate->curexc_type;
    if (unlikely(exc_type)) {
        if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) {
            PyObject *exc_value, *exc_tb;
            exc_value = tstate->curexc_value;
            exc_tb = tstate->curexc_traceback;
            tstate->curexc_type = 0;
            tstate->curexc_value = 0;
            tstate->curexc_traceback = 0;
            Py_DECREF(exc_type);
            Py_XDECREF(exc_value);
            Py_XDECREF(exc_tb);
            return 0;
        } else {
            return -1;
        }
    }
    return 0;
#else
    if (unlikely(PyErr_Occurred())) {
        if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
            PyErr_Clear();
            return 0;
        } else {
            return -1;
        }
    }
    return 0;
#endif
}

/* UnpackItemEndCheck */
static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
    if (unlikely(retval)) {
        Py_DECREF(retval);
        __Pyx_RaiseTooManyValuesError(expected);
        return -1;
    }
    return __Pyx_IterFinish();
}

/* BytesEquals */
static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
    return PyObject_RichCompareBool(s1, s2, equals);
#else
    if (s1 == s2) {
        return (equals == Py_EQ);
    } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
        const char *ps1, *ps2;
        Py_ssize_t length = PyBytes_GET_SIZE(s1);
        if (length != PyBytes_GET_SIZE(s2))
            return (equals == Py_NE);
        ps1 = PyBytes_AS_STRING(s1);
        ps2 = PyBytes_AS_STRING(s2);
        if (ps1[0] != ps2[0]) {
            return (equals == Py_NE);
        } else if (length == 1) {
            return (equals == Py_EQ);
        } else {
            int result;
#if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000)
            Py_hash_t hash1, hash2;
            hash1 = ((PyBytesObject*)s1)->ob_shash;
            hash2 = ((PyBytesObject*)s2)->ob_shash;
            if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
                return (equals == Py_NE);
            }
#endif
            result = memcmp(ps1, ps2, (size_t)length);
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
        return (equals == Py_NE);
    } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
        return (equals == Py_NE);
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
#endif
}

/* UnicodeEquals */
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
    return PyObject_RichCompareBool(s1, s2, equals);
#else
#if PY_MAJOR_VERSION < 3
    PyObject* owned_ref = NULL;
#endif
    int s1_is_unicode, s2_is_unicode;
    if (s1 == s2) {
        goto return_eq;
    }
    s1_is_unicode = PyUnicode_CheckExact(s1);
    s2_is_unicode = PyUnicode_CheckExact(s2);
#if PY_MAJOR_VERSION < 3
    if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) {
        owned_ref = PyUnicode_FromObject(s2);
        if (unlikely(!owned_ref))
            return -1;
        s2 = owned_ref;
        s2_is_unicode = 1;
    } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) {
        owned_ref = PyUnicode_FromObject(s1);
        if (unlikely(!owned_ref))
            return -1;
        s1 = owned_ref;
        s1_is_unicode = 1;
    } else if (((!s2_is_unicode) & (!s1_is_unicode))) {
        return __Pyx_PyBytes_Equals(s1, s2, equals);
    }
#endif
    if (s1_is_unicode & s2_is_unicode) {
        Py_ssize_t length;
        int kind;
        void *data1, *data2;
        if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0))
            return -1;
        length = __Pyx_PyUnicode_GET_LENGTH(s1);
        if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) {
            goto return_ne;
        }
#if CYTHON_USE_UNICODE_INTERNALS
        {
            Py_hash_t hash1, hash2;
        #if CYTHON_PEP393_ENABLED
            hash1 = ((PyASCIIObject*)s1)->hash;
            hash2 = ((PyASCIIObject*)s2)->hash;
        #else
            hash1 = ((PyUnicodeObject*)s1)->hash;
            hash2 = ((PyUnicodeObject*)s2)->hash;
        #endif
            if (hash1 != hash2 && hash1 != -1 && hash2 != -1) {
                goto return_ne;
            }
        }
#endif
        kind = __Pyx_PyUnicode_KIND(s1);
        if (kind != __Pyx_PyUnicode_KIND(s2)) {
            goto return_ne;
        }
        data1 = __Pyx_PyUnicode_DATA(s1);
        data2 = __Pyx_PyUnicode_DATA(s2);
        if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) {
            goto return_ne;
        } else if (length == 1) {
            goto return_eq;
        } else {
            int result = memcmp(data1, data2, (size_t)(length * kind));
            #if PY_MAJOR_VERSION < 3
            Py_XDECREF(owned_ref);
            #endif
            return (equals == Py_EQ) ? (result == 0) : (result != 0);
        }
    } else if ((s1 == Py_None) & s2_is_unicode) {
        goto return_ne;
    } else if ((s2 == Py_None) & s1_is_unicode) {
        goto return_ne;
    } else {
        int result;
        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
        #if PY_MAJOR_VERSION < 3
        Py_XDECREF(owned_ref);
        #endif
        if (!py_result)
            return -1;
        result = __Pyx_PyObject_IsTrue(py_result);
        Py_DECREF(py_result);
        return result;
    }
return_eq:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(owned_ref);
    #endif
    return (equals == Py_EQ);
return_ne:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(owned_ref);
    #endif
    return (equals == Py_NE);
#endif
}

/* PyObjectCallNoArg */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
#if CYTHON_FAST_PYCALL
    if (PyFunction_Check(func)) {
        return __Pyx_PyFunction_FastCall(func, NULL, 0);
    }
#endif
#if defined(__Pyx_CyFunction_USED) && defined(NDEBUG)
    if (likely(PyCFunction_Check(func) || __Pyx_CyFunction_Check(func)))
#else
    if (likely(PyCFunction_Check(func)))
#endif
    {
        if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) {
            return __Pyx_PyObject_CallMethO(func, NULL);
        }
    }
    return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL);
}
#endif

/* PyIntCompare */
static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) {
    if (op1 == op2) {
        Py_RETURN_TRUE;
    }
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long a = PyInt_AS_LONG(op1);
        if (a == b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        int unequal;
        unsigned long uintval;
        Py_ssize_t size = Py_SIZE(op1);
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        if (intval == 0) {
            if (size == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
        } else if (intval < 0) {
            if (size >= 0)
                Py_RETURN_FALSE;
            intval = -intval;
            size = -size;
        } else {
            if (size <= 0)
                Py_RETURN_FALSE;
        }
        uintval = (unsigned long) intval;
#if PyLong_SHIFT * 4 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 4)) {
            unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 3 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 3)) {
            unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 2 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 2)) {
            unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 1 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 1)) {
            unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
            unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
        if (unequal == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
        if ((double)a == (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    return (
        PyObject_RichCompare(op1, op2, Py_EQ));
}

/* PyObjectGetMethod */
static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) {
    PyObject *attr;
#if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP
    PyTypeObject *tp = Py_TYPE(obj);
    PyObject *descr;
    descrgetfunc f = NULL;
    PyObject **dictptr, *dict;
    int meth_found = 0;
    assert (*method == NULL);
    if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) {
        attr = __Pyx_PyObject_GetAttrStr(obj, name);
        goto try_unpack;
    }
    if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) {
        return 0;
    }
    descr = _PyType_Lookup(tp, name);
    if (likely(descr != NULL)) {
        Py_INCREF(descr);
#if PY_MAJOR_VERSION >= 3
        #ifdef __Pyx_CyFunction_USED
        if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr)))
        #else
        if (likely(PyFunction_Check(descr) || (Py_TYPE(descr) == &PyMethodDescr_Type)))
        #endif
#else
        #ifdef __Pyx_CyFunction_USED
        if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr)))
        #else
        if (likely(PyFunction_Check(descr)))
        #endif
#endif
        {
            meth_found = 1;
        } else {
            f = Py_TYPE(descr)->tp_descr_get;
            if (f != NULL && PyDescr_IsData(descr)) {
                attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
                Py_DECREF(descr);
                goto try_unpack;
            }
        }
    }
    dictptr = _PyObject_GetDictPtr(obj);
    if (dictptr != NULL && (dict = *dictptr) != NULL) {
        Py_INCREF(dict);
        attr = __Pyx_PyDict_GetItemStr(dict, name);
        if (attr != NULL) {
            Py_INCREF(attr);
            Py_DECREF(dict);
            Py_XDECREF(descr);
            goto try_unpack;
        }
        Py_DECREF(dict);
    }
    if (meth_found) {
        *method = descr;
        return 1;
    }
    if (f != NULL) {
        attr = f(descr, obj, (PyObject *)Py_TYPE(obj));
        Py_DECREF(descr);
        goto try_unpack;
    }
    if (descr != NULL) {
        *method = descr;
        return 0;
    }
    PyErr_Format(PyExc_AttributeError,
#if PY_MAJOR_VERSION >= 3
                 "'%.50s' object has no attribute '%U'",
                 tp->tp_name, name);
#else
                 "'%.50s' object has no attribute '%.400s'",
                 tp->tp_name, PyString_AS_STRING(name));
#endif
    return 0;
#else
    attr = __Pyx_PyObject_GetAttrStr(obj, name);
    goto try_unpack;
#endif
try_unpack:
#if CYTHON_UNPACK_METHODS
    if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) {
        PyObject *function = PyMethod_GET_FUNCTION(attr);
        Py_INCREF(function);
        Py_DECREF(attr);
        *method = function;
        return 1;
    }
#endif
    *method = attr;
    return 0;
}

/* PyObjectCallMethod1 */
static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) {
    PyObject *result = __Pyx_PyObject_CallOneArg(method, arg);
    Py_DECREF(method);
    return result;
}
static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) {
    PyObject *method = NULL, *result;
    int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
    if (likely(is_method)) {
        result = __Pyx_PyObject_Call2Args(method, obj, arg);
        Py_DECREF(method);
        return result;
    }
    if (unlikely(!method)) return NULL;
    return __Pyx__PyObject_CallMethod1(method, arg);
}

/* append */
static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
    if (likely(PyList_CheckExact(L))) {
        if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1;
    } else {
        PyObject* retval = __Pyx_PyObject_CallMethod1(L, __pyx_n_s_append, x);
        if (unlikely(!retval))
            return -1;
        Py_DECREF(retval);
    }
    return 0;
}

/* FetchCommonType */
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) {
    PyObject* fake_module;
    PyTypeObject* cached_type = NULL;
    fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI);
    if (!fake_module) return NULL;
    Py_INCREF(fake_module);
    cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name);
    if (cached_type) {
        if (!PyType_Check((PyObject*)cached_type)) {
            PyErr_Format(PyExc_TypeError,
                "Shared Cython type %.200s is not a type object",
                type->tp_name);
            goto bad;
        }
        if (cached_type->tp_basicsize != type->tp_basicsize) {
            PyErr_Format(PyExc_TypeError,
                "Shared Cython type %.200s has the wrong size, try recompiling",
                type->tp_name);
            goto bad;
        }
    } else {
        if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
        PyErr_Clear();
        if (PyType_Ready(type) < 0) goto bad;
        if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0)
            goto bad;
        Py_INCREF(type);
        cached_type = type;
    }
done:
    Py_DECREF(fake_module);
    return cached_type;
bad:
    Py_XDECREF(cached_type);
    cached_type = NULL;
    goto done;
}

/* CythonFunctionShared */
#include <structmember.h>
static PyObject *
__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
{
    if (unlikely(op->func_doc == NULL)) {
        if (op->func.m_ml->ml_doc) {
#if PY_MAJOR_VERSION >= 3
            op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc);
#else
            op->func_doc = PyString_FromString(op->func.m_ml->ml_doc);
#endif
            if (unlikely(op->func_doc == NULL))
                return NULL;
        } else {
            Py_INCREF(Py_None);
            return Py_None;
        }
    }
    Py_INCREF(op->func_doc);
    return op->func_doc;
}
static int
__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
{
    PyObject *tmp = op->func_doc;
    if (value == NULL) {
        value = Py_None;
    }
    Py_INCREF(value);
    op->func_doc = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
{
    if (unlikely(op->func_name == NULL)) {
#if PY_MAJOR_VERSION >= 3
        op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name);
#else
        op->func_name = PyString_InternFromString(op->func.m_ml->ml_name);
#endif
        if (unlikely(op->func_name == NULL))
            return NULL;
    }
    Py_INCREF(op->func_name);
    return op->func_name;
}
static int
__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
{
    PyObject *tmp;
#if PY_MAJOR_VERSION >= 3
    if (unlikely(value == NULL || !PyUnicode_Check(value)))
#else
    if (unlikely(value == NULL || !PyString_Check(value)))
#endif
    {
        PyErr_SetString(PyExc_TypeError,
                        "__name__ must be set to a string object");
        return -1;
    }
    tmp = op->func_name;
    Py_INCREF(value);
    op->func_name = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
{
    Py_INCREF(op->func_qualname);
    return op->func_qualname;
}
static int
__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
{
    PyObject *tmp;
#if PY_MAJOR_VERSION >= 3
    if (unlikely(value == NULL || !PyUnicode_Check(value)))
#else
    if (unlikely(value == NULL || !PyString_Check(value)))
#endif
    {
        PyErr_SetString(PyExc_TypeError,
                        "__qualname__ must be set to a string object");
        return -1;
    }
    tmp = op->func_qualname;
    Py_INCREF(value);
    op->func_qualname = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure)
{
    PyObject *self;
    self = m->func_closure;
    if (self == NULL)
        self = Py_None;
    Py_INCREF(self);
    return self;
}
static PyObject *
__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
{
    if (unlikely(op->func_dict == NULL)) {
        op->func_dict = PyDict_New();
        if (unlikely(op->func_dict == NULL))
            return NULL;
    }
    Py_INCREF(op->func_dict);
    return op->func_dict;
}
static int
__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, CYTHON_UNUSED void *context)
{
    PyObject *tmp;
    if (unlikely(value == NULL)) {
        PyErr_SetString(PyExc_TypeError,
               "function's dictionary may not be deleted");
        return -1;
    }
    if (unlikely(!PyDict_Check(value))) {
        PyErr_SetString(PyExc_TypeError,
               "setting function's dictionary to a non-dict");
        return -1;
    }
    tmp = op->func_dict;
    Py_INCREF(value);
    op->func_dict = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
{
    Py_INCREF(op->func_globals);
    return op->func_globals;
}
static PyObject *
__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
{
    Py_INCREF(Py_None);
    return Py_None;
}
static PyObject *
__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context)
{
    PyObject* result = (op->func_code) ? op->func_code : Py_None;
    Py_INCREF(result);
    return result;
}
static int
__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) {
    int result = 0;
    PyObject *res = op->defaults_getter((PyObject *) op);
    if (unlikely(!res))
        return -1;
    #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    op->defaults_tuple = PyTuple_GET_ITEM(res, 0);
    Py_INCREF(op->defaults_tuple);
    op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
    Py_INCREF(op->defaults_kwdict);
    #else
    op->defaults_tuple = PySequence_ITEM(res, 0);
    if (unlikely(!op->defaults_tuple)) result = -1;
    else {
        op->defaults_kwdict = PySequence_ITEM(res, 1);
        if (unlikely(!op->defaults_kwdict)) result = -1;
    }
    #endif
    Py_DECREF(res);
    return result;
}
static int
__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) {
    PyObject* tmp;
    if (!value) {
        value = Py_None;
    } else if (value != Py_None && !PyTuple_Check(value)) {
        PyErr_SetString(PyExc_TypeError,
                        "__defaults__ must be set to a tuple object");
        return -1;
    }
    Py_INCREF(value);
    tmp = op->defaults_tuple;
    op->defaults_tuple = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) {
    PyObject* result = op->defaults_tuple;
    if (unlikely(!result)) {
        if (op->defaults_getter) {
            if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
            result = op->defaults_tuple;
        } else {
            result = Py_None;
        }
    }
    Py_INCREF(result);
    return result;
}
static int
__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) {
    PyObject* tmp;
    if (!value) {
        value = Py_None;
    } else if (value != Py_None && !PyDict_Check(value)) {
        PyErr_SetString(PyExc_TypeError,
                        "__kwdefaults__ must be set to a dict object");
        return -1;
    }
    Py_INCREF(value);
    tmp = op->defaults_kwdict;
    op->defaults_kwdict = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) {
    PyObject* result = op->defaults_kwdict;
    if (unlikely(!result)) {
        if (op->defaults_getter) {
            if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
            result = op->defaults_kwdict;
        } else {
            result = Py_None;
        }
    }
    Py_INCREF(result);
    return result;
}
static int
__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, CYTHON_UNUSED void *context) {
    PyObject* tmp;
    if (!value || value == Py_None) {
        value = NULL;
    } else if (!PyDict_Check(value)) {
        PyErr_SetString(PyExc_TypeError,
                        "__annotations__ must be set to a dict object");
        return -1;
    }
    Py_XINCREF(value);
    tmp = op->func_annotations;
    op->func_annotations = value;
    Py_XDECREF(tmp);
    return 0;
}
static PyObject *
__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *context) {
    PyObject* result = op->func_annotations;
    if (unlikely(!result)) {
        result = PyDict_New();
        if (unlikely(!result)) return NULL;
        op->func_annotations = result;
    }
    Py_INCREF(result);
    return result;
}
static PyGetSetDef __pyx_CyFunction_getsets[] = {
    {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
    {(char *) "__doc__",  (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
    {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
    {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
    {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0},
    {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0},
    {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
    {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
    {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
    {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
    {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
    {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
    {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
    {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
    {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
    {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
    {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0},
    {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0},
    {0, 0, 0, 0, 0}
};
static PyMemberDef __pyx_CyFunction_members[] = {
    {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), PY_WRITE_RESTRICTED, 0},
    {0, 0, 0,  0, 0}
};
static PyObject *
__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args)
{
#if PY_MAJOR_VERSION >= 3
    Py_INCREF(m->func_qualname);
    return m->func_qualname;
#else
    return PyString_FromString(m->func.m_ml->ml_name);
#endif
}
static PyMethodDef __pyx_CyFunction_methods[] = {
    {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0},
    {0, 0, 0, 0}
};
#if PY_VERSION_HEX < 0x030500A0
#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist)
#else
#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist)
#endif
static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname,
                                       PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
    if (unlikely(op == NULL))
        return NULL;
    op->flags = flags;
    __Pyx_CyFunction_weakreflist(op) = NULL;
    op->func.m_ml = ml;
    op->func.m_self = (PyObject *) op;
    Py_XINCREF(closure);
    op->func_closure = closure;
    Py_XINCREF(module);
    op->func.m_module = module;
    op->func_dict = NULL;
    op->func_name = NULL;
    Py_INCREF(qualname);
    op->func_qualname = qualname;
    op->func_doc = NULL;
    op->func_classobj = NULL;
    op->func_globals = globals;
    Py_INCREF(op->func_globals);
    Py_XINCREF(code);
    op->func_code = code;
    op->defaults_pyobjects = 0;
    op->defaults_size = 0;
    op->defaults = NULL;
    op->defaults_tuple = NULL;
    op->defaults_kwdict = NULL;
    op->defaults_getter = NULL;
    op->func_annotations = NULL;
    return (PyObject *) op;
}
static int
__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m)
{
    Py_CLEAR(m->func_closure);
    Py_CLEAR(m->func.m_module);
    Py_CLEAR(m->func_dict);
    Py_CLEAR(m->func_name);
    Py_CLEAR(m->func_qualname);
    Py_CLEAR(m->func_doc);
    Py_CLEAR(m->func_globals);
    Py_CLEAR(m->func_code);
    Py_CLEAR(m->func_classobj);
    Py_CLEAR(m->defaults_tuple);
    Py_CLEAR(m->defaults_kwdict);
    Py_CLEAR(m->func_annotations);
    if (m->defaults) {
        PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
        int i;
        for (i = 0; i < m->defaults_pyobjects; i++)
            Py_XDECREF(pydefaults[i]);
        PyObject_Free(m->defaults);
        m->defaults = NULL;
    }
    return 0;
}
static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m)
{
    if (__Pyx_CyFunction_weakreflist(m) != NULL)
        PyObject_ClearWeakRefs((PyObject *) m);
    __Pyx_CyFunction_clear(m);
    PyObject_GC_Del(m);
}
static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m)
{
    PyObject_GC_UnTrack(m);
    __Pyx__CyFunction_dealloc(m);
}
static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg)
{
    Py_VISIT(m->func_closure);
    Py_VISIT(m->func.m_module);
    Py_VISIT(m->func_dict);
    Py_VISIT(m->func_name);
    Py_VISIT(m->func_qualname);
    Py_VISIT(m->func_doc);
    Py_VISIT(m->func_globals);
    Py_VISIT(m->func_code);
    Py_VISIT(m->func_classobj);
    Py_VISIT(m->defaults_tuple);
    Py_VISIT(m->defaults_kwdict);
    if (m->defaults) {
        PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
        int i;
        for (i = 0; i < m->defaults_pyobjects; i++)
            Py_VISIT(pydefaults[i]);
    }
    return 0;
}
static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type)
{
#if PY_MAJOR_VERSION < 3
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) {
        Py_INCREF(func);
        return func;
    }
    if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) {
        if (type == NULL)
            type = (PyObject *)(Py_TYPE(obj));
        return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type)));
    }
    if (obj == Py_None)
        obj = NULL;
#endif
    return __Pyx_PyMethod_New(func, obj, type);
}
static PyObject*
__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
{
#if PY_MAJOR_VERSION >= 3
    return PyUnicode_FromFormat("<cyfunction %U at %p>",
                                op->func_qualname, (void *)op);
#else
    return PyString_FromFormat("<cyfunction %s at %p>",
                               PyString_AsString(op->func_qualname), (void *)op);
#endif
}
static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) {
    PyCFunctionObject* f = (PyCFunctionObject*)func;
    PyCFunction meth = f->m_ml->ml_meth;
    Py_ssize_t size;
    switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) {
    case METH_VARARGS:
        if (likely(kw == NULL || PyDict_Size(kw) == 0))
            return (*meth)(self, arg);
        break;
    case METH_VARARGS | METH_KEYWORDS:
        return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw);
    case METH_NOARGS:
        if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
            size = PyTuple_GET_SIZE(arg);
            if (likely(size == 0))
                return (*meth)(self, NULL);
            PyErr_Format(PyExc_TypeError,
                "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)",
                f->m_ml->ml_name, size);
            return NULL;
        }
        break;
    case METH_O:
        if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
            size = PyTuple_GET_SIZE(arg);
            if (likely(size == 1)) {
                PyObject *result, *arg0;
                #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
                arg0 = PyTuple_GET_ITEM(arg, 0);
                #else
                arg0 = PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL;
                #endif
                result = (*meth)(self, arg0);
                #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS)
                Py_DECREF(arg0);
                #endif
                return result;
            }
            PyErr_Format(PyExc_TypeError,
                "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)",
                f->m_ml->ml_name, size);
            return NULL;
        }
        break;
    default:
        PyErr_SetString(PyExc_SystemError, "Bad call flags in "
                        "__Pyx_CyFunction_Call. METH_OLDARGS is no "
                        "longer supported!");
        return NULL;
    }
    PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments",
                 f->m_ml->ml_name);
    return NULL;
}
static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
    return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw);
}
static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) {
    PyObject *result;
    __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func;
    if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) {
        Py_ssize_t argc;
        PyObject *new_args;
        PyObject *self;
        argc = PyTuple_GET_SIZE(args);
        new_args = PyTuple_GetSlice(args, 1, argc);
        if (unlikely(!new_args))
            return NULL;
        self = PyTuple_GetItem(args, 0);
        if (unlikely(!self)) {
            Py_DECREF(new_args);
#if PY_MAJOR_VERSION > 2
            PyErr_Format(PyExc_TypeError,
                         "unbound method %.200S() needs an argument",
                         cyfunc->func_qualname);
#else
            PyErr_SetString(PyExc_TypeError,
                            "unbound method needs an argument");
#endif
            return NULL;
        }
        result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw);
        Py_DECREF(new_args);
    } else {
        result = __Pyx_CyFunction_Call(func, args, kw);
    }
    return result;
}
static PyTypeObject __pyx_CyFunctionType_type = {
    PyVarObject_HEAD_INIT(0, 0)
    "cython_function_or_method",
    sizeof(__pyx_CyFunctionObject),
    0,
    (destructor) __Pyx_CyFunction_dealloc,
    0,
    0,
    0,
#if PY_MAJOR_VERSION < 3
    0,
#else
    0,
#endif
    (reprfunc) __Pyx_CyFunction_repr,
    0,
    0,
    0,
    0,
    __Pyx_CyFunction_CallAsMethod,
    0,
    0,
    0,
    0,
    Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC,
    0,
    (traverseproc) __Pyx_CyFunction_traverse,
    (inquiry) __Pyx_CyFunction_clear,
    0,
#if PY_VERSION_HEX < 0x030500A0
    offsetof(__pyx_CyFunctionObject, func_weakreflist),
#else
    offsetof(PyCFunctionObject, m_weakreflist),
#endif
    0,
    0,
    __pyx_CyFunction_methods,
    __pyx_CyFunction_members,
    __pyx_CyFunction_getsets,
    0,
    0,
    __Pyx_CyFunction_descr_get,
    0,
    offsetof(__pyx_CyFunctionObject, func_dict),
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
    0,
#if PY_VERSION_HEX >= 0x030400a1
    0,
#endif
#if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800)
    0,
#endif
#if PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000
    0,
#endif
#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000
    0,
#endif
};
static int __pyx_CyFunction_init(void) {
    __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type);
    if (unlikely(__pyx_CyFunctionType == NULL)) {
        return -1;
    }
    return 0;
}
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    m->defaults = PyObject_Malloc(size);
    if (unlikely(!m->defaults))
        return PyErr_NoMemory();
    memset(m->defaults, 0, size);
    m->defaults_pyobjects = pyobjects;
    m->defaults_size = size;
    return m->defaults;
}
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    m->defaults_tuple = tuple;
    Py_INCREF(tuple);
}
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    m->defaults_kwdict = dict;
    Py_INCREF(dict);
}
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
    __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
    m->func_annotations = dict;
    Py_INCREF(dict);
}

/* CythonFunction */
static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname,
                                      PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
    PyObject *op = __Pyx_CyFunction_Init(
        PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType),
        ml, flags, qualname, closure, module, globals, code
    );
    if (likely(op)) {
        PyObject_GC_Track(op);
    }
    return op;
}

/* py_abs */
#if CYTHON_USE_PYLONG_INTERNALS
static PyObject *__Pyx_PyLong_AbsNeg(PyObject *n) {
    if (likely(Py_SIZE(n) == -1)) {
        return PyLong_FromLong(((PyLongObject*)n)->ob_digit[0]);
    }
#if CYTHON_COMPILING_IN_CPYTHON
    {
        PyObject *copy = _PyLong_Copy((PyLongObject*)n);
        if (likely(copy)) {
            __Pyx_SET_SIZE(copy, -Py_SIZE(copy));
        }
        return copy;
    }
#else
    return PyNumber_Negative(n);
#endif
}
#endif

/* MemviewSliceInit */
static int
__Pyx_init_memviewslice(struct __pyx_memoryview_obj *memview,
                        int ndim,
                        __Pyx_memviewslice *memviewslice,
                        int memview_is_new_reference)
{
    __Pyx_RefNannyDeclarations
    int i, retval=-1;
    Py_buffer *buf = &memview->view;
    __Pyx_RefNannySetupContext("init_memviewslice", 0);
    if (unlikely(memviewslice->memview || memviewslice->data)) {
        PyErr_SetString(PyExc_ValueError,
            "memviewslice is already initialized!");
        goto fail;
    }
    if (buf->strides) {
        for (i = 0; i < ndim; i++) {
            memviewslice->strides[i] = buf->strides[i];
        }
    } else {
        Py_ssize_t stride = buf->itemsize;
        for (i = ndim - 1; i >= 0; i--) {
            memviewslice->strides[i] = stride;
            stride *= buf->shape[i];
        }
    }
    for (i = 0; i < ndim; i++) {
        memviewslice->shape[i]   = buf->shape[i];
        if (buf->suboffsets) {
            memviewslice->suboffsets[i] = buf->suboffsets[i];
        } else {
            memviewslice->suboffsets[i] = -1;
        }
    }
    memviewslice->memview = memview;
    memviewslice->data = (char *)buf->buf;
    if (__pyx_add_acquisition_count(memview) == 0 && !memview_is_new_reference) {
        Py_INCREF(memview);
    }
    retval = 0;
    goto no_fail;
fail:
    memviewslice->memview = 0;
    memviewslice->data = 0;
    retval = -1;
no_fail:
    __Pyx_RefNannyFinishContext();
    return retval;
}
#ifndef Py_NO_RETURN
#define Py_NO_RETURN
#endif
static void __pyx_fatalerror(const char *fmt, ...) Py_NO_RETURN {
    va_list vargs;
    char msg[200];
#if PY_VERSION_HEX >= 0x030A0000 || defined(HAVE_STDARG_PROTOTYPES)
    va_start(vargs, fmt);
#else
    va_start(vargs);
#endif
    vsnprintf(msg, 200, fmt, vargs);
    va_end(vargs);
    Py_FatalError(msg);
}
static CYTHON_INLINE int
__pyx_add_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
                                   PyThread_type_lock lock)
{
    int result;
    PyThread_acquire_lock(lock, 1);
    result = (*acquisition_count)++;
    PyThread_release_lock(lock);
    return result;
}
static CYTHON_INLINE int
__pyx_sub_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
                                   PyThread_type_lock lock)
{
    int result;
    PyThread_acquire_lock(lock, 1);
    result = (*acquisition_count)--;
    PyThread_release_lock(lock);
    return result;
}
static CYTHON_INLINE void
__Pyx_INC_MEMVIEW(__Pyx_memviewslice *memslice, int have_gil, int lineno)
{
    int first_time;
    struct __pyx_memoryview_obj *memview = memslice->memview;
    if (unlikely(!memview || (PyObject *) memview == Py_None))
        return;
    if (unlikely(__pyx_get_slice_count(memview) < 0))
        __pyx_fatalerror("Acquisition count is %d (line %d)",
                         __pyx_get_slice_count(memview), lineno);
    first_time = __pyx_add_acquisition_count(memview) == 0;
    if (unlikely(first_time)) {
        if (have_gil) {
            Py_INCREF((PyObject *) memview);
        } else {
            PyGILState_STATE _gilstate = PyGILState_Ensure();
            Py_INCREF((PyObject *) memview);
            PyGILState_Release(_gilstate);
        }
    }
}
static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *memslice,
                                             int have_gil, int lineno) {
    int last_time;
    struct __pyx_memoryview_obj *memview = memslice->memview;
    if (unlikely(!memview || (PyObject *) memview == Py_None)) {
        memslice->memview = NULL;
        return;
    }
    if (unlikely(__pyx_get_slice_count(memview) <= 0))
        __pyx_fatalerror("Acquisition count is %d (line %d)",
                         __pyx_get_slice_count(memview), lineno);
    last_time = __pyx_sub_acquisition_count(memview) == 1;
    memslice->data = NULL;
    if (unlikely(last_time)) {
        if (have_gil) {
            Py_CLEAR(memslice->memview);
        } else {
            PyGILState_STATE _gilstate = PyGILState_Ensure();
            Py_CLEAR(memslice->memview);
            PyGILState_Release(_gilstate);
        }
    } else {
        memslice->memview = NULL;
    }
}

/* ObjectGetItem */
#if CYTHON_USE_TYPE_SLOTS
static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject* index) {
    PyObject *runerr = NULL;
    Py_ssize_t key_value;
    PySequenceMethods *m = Py_TYPE(obj)->tp_as_sequence;
    if (unlikely(!(m && m->sq_item))) {
        PyErr_Format(PyExc_TypeError, "'%.200s' object is not subscriptable", Py_TYPE(obj)->tp_name);
        return NULL;
    }
    key_value = __Pyx_PyIndex_AsSsize_t(index);
    if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) {
        return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1);
    }
    if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) {
        PyErr_Clear();
        PyErr_Format(PyExc_IndexError, "cannot fit '%.200s' into an index-sized integer", Py_TYPE(index)->tp_name);
    }
    return NULL;
}
static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key) {
    PyMappingMethods *m = Py_TYPE(obj)->tp_as_mapping;
    if (likely(m && m->mp_subscript)) {
        return m->mp_subscript(obj, key);
    }
    return __Pyx_PyObject_GetIndex(obj, key);
}
#endif

/* PyIntBinop */
#if !CYTHON_COMPILING_IN_PYPY
static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, int inplace, int zerodivision_check) {
    (void)inplace;
    (void)zerodivision_check;
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long x;
        long a = PyInt_AS_LONG(op1);
            x = (long)((unsigned long)a - b);
            if (likely((x^a) >= 0 || (x^~b) >= 0))
                return PyInt_FromLong(x);
            return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        const long b = intval;
        long a, x;
#ifdef HAVE_LONG_LONG
        const PY_LONG_LONG llb = intval;
        PY_LONG_LONG lla, llx;
#endif
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        const Py_ssize_t size = Py_SIZE(op1);
        if (likely(__Pyx_sst_abs(size) <= 1)) {
            a = likely(size) ? digits[0] : 0;
            if (size == -1) a = -a;
        } else {
            switch (size) {
                case -2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 2:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 3:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case -4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                case 4:
                    if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                        a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        break;
#ifdef HAVE_LONG_LONG
                    } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
                        lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
                        goto long_long;
#endif
                    }
                    CYTHON_FALLTHROUGH;
                default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
            }
        }
                x = a - b;
            return PyLong_FromLong(x);
#ifdef HAVE_LONG_LONG
        long_long:
                llx = lla - llb;
            return PyLong_FromLongLong(llx);
#endif
        
        
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
            double result;
            PyFPE_START_PROTECT("subtract", return NULL)
            result = ((double)a) - (double)b;
            PyFPE_END_PROTECT(result)
            return PyFloat_FromDouble(result);
    }
    return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2);
}
#endif

/* PyIntCompare */
static CYTHON_INLINE PyObject* __Pyx_PyInt_NeObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) {
    if (op1 == op2) {
        Py_RETURN_FALSE;
    }
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long a = PyInt_AS_LONG(op1);
        if (a != b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        int unequal;
        unsigned long uintval;
        Py_ssize_t size = Py_SIZE(op1);
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        if (intval == 0) {
            if (size != 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
        } else if (intval < 0) {
            if (size >= 0)
                Py_RETURN_TRUE;
            intval = -intval;
            size = -size;
        } else {
            if (size <= 0)
                Py_RETURN_TRUE;
        }
        uintval = (unsigned long) intval;
#if PyLong_SHIFT * 4 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 4)) {
            unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 3 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 3)) {
            unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 2 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 2)) {
            unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 1 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 1)) {
            unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
            unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
        if (unequal != 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
        if ((double)a != (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    return (
        PyObject_RichCompare(op1, op2, Py_NE));
}

/* PyObjectCallMethod0 */
static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) {
    PyObject *method = NULL, *result = NULL;
    int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
    if (likely(is_method)) {
        result = __Pyx_PyObject_CallOneArg(method, obj);
        Py_DECREF(method);
        return result;
    }
    if (unlikely(!method)) goto bad;
    result = __Pyx_PyObject_CallNoArg(method);
    Py_DECREF(method);
bad:
    return result;
}

/* UnpackTupleError */
static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) {
    if (t == Py_None) {
      __Pyx_RaiseNoneNotIterableError();
    } else if (PyTuple_GET_SIZE(t) < index) {
      __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t));
    } else {
      __Pyx_RaiseTooManyValuesError(index);
    }
}

/* UnpackTuple2 */
static CYTHON_INLINE int __Pyx_unpack_tuple2_exact(
        PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, int decref_tuple) {
    PyObject *value1 = NULL, *value2 = NULL;
#if CYTHON_COMPILING_IN_PYPY
    value1 = PySequence_ITEM(tuple, 0);  if (unlikely(!value1)) goto bad;
    value2 = PySequence_ITEM(tuple, 1);  if (unlikely(!value2)) goto bad;
#else
    value1 = PyTuple_GET_ITEM(tuple, 0);  Py_INCREF(value1);
    value2 = PyTuple_GET_ITEM(tuple, 1);  Py_INCREF(value2);
#endif
    if (decref_tuple) {
        Py_DECREF(tuple);
    }
    *pvalue1 = value1;
    *pvalue2 = value2;
    return 0;
#if CYTHON_COMPILING_IN_PYPY
bad:
    Py_XDECREF(value1);
    Py_XDECREF(value2);
    if (decref_tuple) { Py_XDECREF(tuple); }
    return -1;
#endif
}
static int __Pyx_unpack_tuple2_generic(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2,
                                       int has_known_size, int decref_tuple) {
    Py_ssize_t index;
    PyObject *value1 = NULL, *value2 = NULL, *iter = NULL;
    iternextfunc iternext;
    iter = PyObject_GetIter(tuple);
    if (unlikely(!iter)) goto bad;
    if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; }
    iternext = Py_TYPE(iter)->tp_iternext;
    value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; }
    value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; }
    if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad;
    Py_DECREF(iter);
    *pvalue1 = value1;
    *pvalue2 = value2;
    return 0;
unpacking_failed:
    if (!has_known_size && __Pyx_IterFinish() == 0)
        __Pyx_RaiseNeedMoreValuesError(index);
bad:
    Py_XDECREF(iter);
    Py_XDECREF(value1);
    Py_XDECREF(value2);
    if (decref_tuple) { Py_XDECREF(tuple); }
    return -1;
}

/* dict_iter */
static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name,
                                                   Py_ssize_t* p_orig_length, int* p_source_is_dict) {
    is_dict = is_dict || likely(PyDict_CheckExact(iterable));
    *p_source_is_dict = is_dict;
    if (is_dict) {
#if !CYTHON_COMPILING_IN_PYPY
        *p_orig_length = PyDict_Size(iterable);
        Py_INCREF(iterable);
        return iterable;
#elif PY_MAJOR_VERSION >= 3
        static PyObject *py_items = NULL, *py_keys = NULL, *py_values = NULL;
        PyObject **pp = NULL;
        if (method_name) {
            const char *name = PyUnicode_AsUTF8(method_name);
            if (strcmp(name, "iteritems") == 0) pp = &py_items;
            else if (strcmp(name, "iterkeys") == 0) pp = &py_keys;
            else if (strcmp(name, "itervalues") == 0) pp = &py_values;
            if (pp) {
                if (!*pp) {
                    *pp = PyUnicode_FromString(name + 4);
                    if (!*pp)
                        return NULL;
                }
                method_name = *pp;
            }
        }
#endif
    }
    *p_orig_length = 0;
    if (method_name) {
        PyObject* iter;
        iterable = __Pyx_PyObject_CallMethod0(iterable, method_name);
        if (!iterable)
            return NULL;
#if !CYTHON_COMPILING_IN_PYPY
        if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable))
            return iterable;
#endif
        iter = PyObject_GetIter(iterable);
        Py_DECREF(iterable);
        return iter;
    }
    return PyObject_GetIter(iterable);
}
static CYTHON_INLINE int __Pyx_dict_iter_next(
        PyObject* iter_obj, CYTHON_NCP_UNUSED Py_ssize_t orig_length, CYTHON_NCP_UNUSED Py_ssize_t* ppos,
        PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) {
    PyObject* next_item;
#if !CYTHON_COMPILING_IN_PYPY
    if (source_is_dict) {
        PyObject *key, *value;
        if (unlikely(orig_length != PyDict_Size(iter_obj))) {
            PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration");
            return -1;
        }
        if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) {
            return 0;
        }
        if (pitem) {
            PyObject* tuple = PyTuple_New(2);
            if (unlikely(!tuple)) {
                return -1;
            }
            Py_INCREF(key);
            Py_INCREF(value);
            PyTuple_SET_ITEM(tuple, 0, key);
            PyTuple_SET_ITEM(tuple, 1, value);
            *pitem = tuple;
        } else {
            if (pkey) {
                Py_INCREF(key);
                *pkey = key;
            }
            if (pvalue) {
                Py_INCREF(value);
                *pvalue = value;
            }
        }
        return 1;
    } else if (PyTuple_CheckExact(iter_obj)) {
        Py_ssize_t pos = *ppos;
        if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0;
        *ppos = pos + 1;
        next_item = PyTuple_GET_ITEM(iter_obj, pos);
        Py_INCREF(next_item);
    } else if (PyList_CheckExact(iter_obj)) {
        Py_ssize_t pos = *ppos;
        if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0;
        *ppos = pos + 1;
        next_item = PyList_GET_ITEM(iter_obj, pos);
        Py_INCREF(next_item);
    } else
#endif
    {
        next_item = PyIter_Next(iter_obj);
        if (unlikely(!next_item)) {
            return __Pyx_IterFinish();
        }
    }
    if (pitem) {
        *pitem = next_item;
    } else if (pkey && pvalue) {
        if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1))
            return -1;
    } else if (pkey) {
        *pkey = next_item;
    } else {
        *pvalue = next_item;
    }
    return 1;
}

/* PyObjectSetAttrStr */
#if CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) {
    PyTypeObject* tp = Py_TYPE(obj);
    if (likely(tp->tp_setattro))
        return tp->tp_setattro(obj, attr_name, value);
#if PY_MAJOR_VERSION < 3
    if (likely(tp->tp_setattr))
        return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value);
#endif
    return PyObject_SetAttr(obj, attr_name, value);
}
#endif

/* pop_index */
static PyObject* __Pyx__PyObject_PopNewIndex(PyObject* L, PyObject* py_ix) {
    PyObject *r;
    if (unlikely(!py_ix)) return NULL;
    r = __Pyx__PyObject_PopIndex(L, py_ix);
    Py_DECREF(py_ix);
    return r;
}
static PyObject* __Pyx__PyObject_PopIndex(PyObject* L, PyObject* py_ix) {
    return __Pyx_PyObject_CallMethod1(L, __pyx_n_s_pop, py_ix);
}
#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static PyObject* __Pyx__PyList_PopIndex(PyObject* L, PyObject* py_ix, Py_ssize_t ix) {
    Py_ssize_t size = PyList_GET_SIZE(L);
    if (likely(size > (((PyListObject*)L)->allocated >> 1))) {
        Py_ssize_t cix = ix;
        if (cix < 0) {
            cix += size;
        }
        if (likely(__Pyx_is_valid_index(cix, size))) {
            PyObject* v = PyList_GET_ITEM(L, cix);
            __Pyx_SET_SIZE(L, Py_SIZE(L) - 1);
            size -= 1;
            memmove(&PyList_GET_ITEM(L, cix), &PyList_GET_ITEM(L, cix+1), (size_t)(size-cix)*sizeof(PyObject*));
            return v;
        }
    }
    if (py_ix == Py_None) {
        return __Pyx__PyObject_PopNewIndex(L, PyInt_FromSsize_t(ix));
    } else {
        return __Pyx__PyObject_PopIndex(L, py_ix);
    }
}
#endif

/* ArgTypeTest */
static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact)
{
    if (unlikely(!type)) {
        PyErr_SetString(PyExc_SystemError, "Missing type object");
        return 0;
    }
    else if (exact) {
        #if PY_MAJOR_VERSION == 2
        if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
        #endif
    }
    else {
        if (likely(__Pyx_TypeCheck(obj, type))) return 1;
    }
    PyErr_Format(PyExc_TypeError,
        "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
        name, type->tp_name, Py_TYPE(obj)->tp_name);
    return 0;
}

/* ExtTypeTest */
static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
    if (unlikely(!type)) {
        PyErr_SetString(PyExc_SystemError, "Missing type object");
        return 0;
    }
    if (likely(__Pyx_TypeCheck(obj, type)))
        return 1;
    PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
                 Py_TYPE(obj)->tp_name, type->tp_name);
    return 0;
}

/* JoinPyUnicode */
static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
                                      CYTHON_UNUSED Py_UCS4 max_char) {
#if CYTHON_USE_UNICODE_INTERNALS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
    PyObject *result_uval;
    int result_ukind;
    Py_ssize_t i, char_pos;
    void *result_udata;
#if CYTHON_PEP393_ENABLED
    result_uval = PyUnicode_New(result_ulength, max_char);
    if (unlikely(!result_uval)) return NULL;
    result_ukind = (max_char <= 255) ? PyUnicode_1BYTE_KIND : (max_char <= 65535) ? PyUnicode_2BYTE_KIND : PyUnicode_4BYTE_KIND;
    result_udata = PyUnicode_DATA(result_uval);
#else
    result_uval = PyUnicode_FromUnicode(NULL, result_ulength);
    if (unlikely(!result_uval)) return NULL;
    result_ukind = sizeof(Py_UNICODE);
    result_udata = PyUnicode_AS_UNICODE(result_uval);
#endif
    char_pos = 0;
    for (i=0; i < value_count; i++) {
        int ukind;
        Py_ssize_t ulength;
        void *udata;
        PyObject *uval = PyTuple_GET_ITEM(value_tuple, i);
        if (unlikely(__Pyx_PyUnicode_READY(uval)))
            goto bad;
        ulength = __Pyx_PyUnicode_GET_LENGTH(uval);
        if (unlikely(!ulength))
            continue;
        if (unlikely(char_pos + ulength < 0))
            goto overflow;
        ukind = __Pyx_PyUnicode_KIND(uval);
        udata = __Pyx_PyUnicode_DATA(uval);
        if (!CYTHON_PEP393_ENABLED || ukind == result_ukind) {
            memcpy((char *)result_udata + char_pos * result_ukind, udata, (size_t) (ulength * result_ukind));
        } else {
            #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030300F0 || defined(_PyUnicode_FastCopyCharacters)
            _PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength);
            #else
            Py_ssize_t j;
            for (j=0; j < ulength; j++) {
                Py_UCS4 uchar = __Pyx_PyUnicode_READ(ukind, udata, j);
                __Pyx_PyUnicode_WRITE(result_ukind, result_udata, char_pos+j, uchar);
            }
            #endif
        }
        char_pos += ulength;
    }
    return result_uval;
overflow:
    PyErr_SetString(PyExc_OverflowError, "join() result is too long for a Python string");
bad:
    Py_DECREF(result_uval);
    return NULL;
#else
    result_ulength++;
    value_count++;
    return PyUnicode_Join(__pyx_empty_unicode, value_tuple);
#endif
}

/* pyfrozenset_new */
static CYTHON_INLINE PyObject* __Pyx_PyFrozenSet_New(PyObject* it) {
    if (it) {
        PyObject* result;
#if CYTHON_COMPILING_IN_PYPY
        PyObject* args;
        args = PyTuple_Pack(1, it);
        if (unlikely(!args))
            return NULL;
        result = PyObject_Call((PyObject*)&PyFrozenSet_Type, args, NULL);
        Py_DECREF(args);
        return result;
#else
        if (PyFrozenSet_CheckExact(it)) {
            Py_INCREF(it);
            return it;
        }
        result = PyFrozenSet_New(it);
        if (unlikely(!result))
            return NULL;
        if ((PY_VERSION_HEX >= 0x031000A1) || likely(PySet_GET_SIZE(result)))
            return result;
        Py_DECREF(result);
#endif
    }
#if CYTHON_USE_TYPE_SLOTS
    return PyFrozenSet_Type.tp_new(&PyFrozenSet_Type, __pyx_empty_tuple, NULL);
#else
    return PyObject_Call((PyObject*)&PyFrozenSet_Type, __pyx_empty_tuple, NULL);
#endif
}

/* PySetContains */
static int __Pyx_PySet_ContainsUnhashable(PyObject *set, PyObject *key) {
    int result = -1;
    if (PySet_Check(key) && PyErr_ExceptionMatches(PyExc_TypeError)) {
        PyObject *tmpkey;
        PyErr_Clear();
        tmpkey = __Pyx_PyFrozenSet_New(key);
        if (tmpkey != NULL) {
            result = PySet_Contains(set, tmpkey);
            Py_DECREF(tmpkey);
        }
    }
    return result;
}
static CYTHON_INLINE int __Pyx_PySet_ContainsTF(PyObject* key, PyObject* set, int eq) {
    int result = PySet_Contains(set, key);
    if (unlikely(result < 0)) {
        result = __Pyx_PySet_ContainsUnhashable(set, key);
    }
    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}

/* DictGetItem */
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
    PyObject *value;
    value = PyDict_GetItemWithError(d, key);
    if (unlikely(!value)) {
        if (!PyErr_Occurred()) {
            if (unlikely(PyTuple_Check(key))) {
                PyObject* args = PyTuple_Pack(1, key);
                if (likely(args)) {
                    PyErr_SetObject(PyExc_KeyError, args);
                    Py_DECREF(args);
                }
            } else {
                PyErr_SetObject(PyExc_KeyError, key);
            }
        }
        return NULL;
    }
    Py_INCREF(value);
    return value;
}
#endif

/* UnpackUnboundCMethod */
static int __Pyx_TryUnpackUnboundCMethod(__Pyx_CachedCFunction* target) {
    PyObject *method;
    method = __Pyx_PyObject_GetAttrStr(target->type, *target->method_name);
    if (unlikely(!method))
        return -1;
    target->method = method;
#if CYTHON_COMPILING_IN_CPYTHON
    #if PY_MAJOR_VERSION >= 3
    if (likely(__Pyx_TypeCheck(method, &PyMethodDescr_Type)))
    #endif
    {
        PyMethodDescrObject *descr = (PyMethodDescrObject*) method;
        target->func = descr->d_method->ml_meth;
        target->flag = descr->d_method->ml_flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_STACKLESS);
    }
#endif
    return 0;
}

/* CallUnboundCMethod1 */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg) {
    if (likely(cfunc->func)) {
        int flag = cfunc->flag;
        if (flag == METH_O) {
            return (*(cfunc->func))(self, arg);
        } else if (PY_VERSION_HEX >= 0x030600B1 && flag == METH_FASTCALL) {
            #if PY_VERSION_HEX >= 0x030700A0
                return (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)cfunc->func)(self, &arg, 1);
            #else
                return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL);
            #endif
        } else if (PY_VERSION_HEX >= 0x030700A0 && flag == (METH_FASTCALL | METH_KEYWORDS)) {
            return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL);
        }
    }
    return __Pyx__CallUnboundCMethod1(cfunc, self, arg);
}
#endif
static PyObject* __Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg){
    PyObject *args, *result = NULL;
    if (unlikely(!cfunc->func && !cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL;
#if CYTHON_COMPILING_IN_CPYTHON
    if (cfunc->func && (cfunc->flag & METH_VARARGS)) {
        args = PyTuple_New(1);
        if (unlikely(!args)) goto bad;
        Py_INCREF(arg);
        PyTuple_SET_ITEM(args, 0, arg);
        if (cfunc->flag & METH_KEYWORDS)
            result = (*(PyCFunctionWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, NULL);
        else
            result = (*cfunc->func)(self, args);
    } else {
        args = PyTuple_New(2);
        if (unlikely(!args)) goto bad;
        Py_INCREF(self);
        PyTuple_SET_ITEM(args, 0, self);
        Py_INCREF(arg);
        PyTuple_SET_ITEM(args, 1, arg);
        result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
    }
#else
    args = PyTuple_Pack(2, self, arg);
    if (unlikely(!args)) goto bad;
    result = __Pyx_PyObject_Call(cfunc->method, args, NULL);
#endif
bad:
    Py_XDECREF(args);
    return result;
}

/* set_iter */
static CYTHON_INLINE PyObject* __Pyx_set_iterator(PyObject* iterable, int is_set,
                                                  Py_ssize_t* p_orig_length, int* p_source_is_set) {
#if CYTHON_COMPILING_IN_CPYTHON
    is_set = is_set || likely(PySet_CheckExact(iterable) || PyFrozenSet_CheckExact(iterable));
    *p_source_is_set = is_set;
    if (likely(is_set)) {
        *p_orig_length = PySet_Size(iterable);
        Py_INCREF(iterable);
        return iterable;
    }
#else
    (void)is_set;
    *p_source_is_set = 0;
#endif
    *p_orig_length = 0;
    return PyObject_GetIter(iterable);
}
static CYTHON_INLINE int __Pyx_set_iter_next(
        PyObject* iter_obj, Py_ssize_t orig_length,
        Py_ssize_t* ppos, PyObject **value,
        int source_is_set) {
    if (!CYTHON_COMPILING_IN_CPYTHON || unlikely(!source_is_set)) {
        *value = PyIter_Next(iter_obj);
        if (unlikely(!*value)) {
            return __Pyx_IterFinish();
        }
        (void)orig_length;
        (void)ppos;
        return 1;
    }
#if CYTHON_COMPILING_IN_CPYTHON
    if (unlikely(PySet_GET_SIZE(iter_obj) != orig_length)) {
        PyErr_SetString(
            PyExc_RuntimeError,
            "set changed size during iteration");
        return -1;
    }
    {
        Py_hash_t hash;
        int ret = _PySet_NextEntry(iter_obj, ppos, value, &hash);
        assert (ret != -1);
        if (likely(ret)) {
            Py_INCREF(*value);
            return 1;
        }
    }
#endif
    return 0;
}

/* Import */
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
    PyObject *empty_list = 0;
    PyObject *module = 0;
    PyObject *global_dict = 0;
    PyObject *empty_dict = 0;
    PyObject *list;
    #if PY_MAJOR_VERSION < 3
    PyObject *py_import;
    py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
    if (!py_import)
        goto bad;
    #endif
    if (from_list)
        list = from_list;
    else {
        empty_list = PyList_New(0);
        if (!empty_list)
            goto bad;
        list = empty_list;
    }
    global_dict = PyModule_GetDict(__pyx_m);
    if (!global_dict)
        goto bad;
    empty_dict = PyDict_New();
    if (!empty_dict)
        goto bad;
    {
        #if PY_MAJOR_VERSION >= 3
        if (level == -1) {
            if ((1) && (strchr(__Pyx_MODULE_NAME, '.'))) {
                module = PyImport_ImportModuleLevelObject(
                    name, global_dict, empty_dict, list, 1);
                if (!module) {
                    if (!PyErr_ExceptionMatches(PyExc_ImportError))
                        goto bad;
                    PyErr_Clear();
                }
            }
            level = 0;
        }
        #endif
        if (!module) {
            #if PY_MAJOR_VERSION < 3
            PyObject *py_level = PyInt_FromLong(level);
            if (!py_level)
                goto bad;
            module = PyObject_CallFunctionObjArgs(py_import,
                name, global_dict, empty_dict, list, py_level, (PyObject *)NULL);
            Py_DECREF(py_level);
            #else
            module = PyImport_ImportModuleLevelObject(
                name, global_dict, empty_dict, list, level);
            #endif
        }
    }
bad:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(py_import);
    #endif
    Py_XDECREF(empty_list);
    Py_XDECREF(empty_dict);
    return module;
}

/* ImportFrom */
static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
    PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
    if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
        PyErr_Format(PyExc_ImportError,
        #if PY_MAJOR_VERSION < 3
            "cannot import name %.230s", PyString_AS_STRING(name));
        #else
            "cannot import name %S", name);
        #endif
    }
    return value;
}

/* HasAttr */
static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) {
    PyObject *r;
    if (unlikely(!__Pyx_PyBaseString_Check(n))) {
        PyErr_SetString(PyExc_TypeError,
                        "hasattr(): attribute name must be string");
        return -1;
    }
    r = __Pyx_GetAttr(o, n);
    if (unlikely(!r)) {
        PyErr_Clear();
        return 0;
    } else {
        Py_DECREF(r);
        return 1;
    }
}

/* GetTopmostException */
#if CYTHON_USE_EXC_INFO_STACK
static _PyErr_StackItem *
__Pyx_PyErr_GetTopmostException(PyThreadState *tstate)
{
    _PyErr_StackItem *exc_info = tstate->exc_info;
    while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) &&
           exc_info->previous_item != NULL)
    {
        exc_info = exc_info->previous_item;
    }
    return exc_info;
}
#endif

/* SaveResetException */
#if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate);
    *type = exc_info->exc_type;
    *value = exc_info->exc_value;
    *tb = exc_info->exc_traceback;
    #else
    *type = tstate->exc_type;
    *value = tstate->exc_value;
    *tb = tstate->exc_traceback;
    #endif
    Py_XINCREF(*type);
    Py_XINCREF(*value);
    Py_XINCREF(*tb);
}
static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = tstate->exc_info;
    tmp_type = exc_info->exc_type;
    tmp_value = exc_info->exc_value;
    tmp_tb = exc_info->exc_traceback;
    exc_info->exc_type = type;
    exc_info->exc_value = value;
    exc_info->exc_traceback = tb;
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = type;
    tstate->exc_value = value;
    tstate->exc_traceback = tb;
    #endif
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
}
#endif

/* GetException */
#if CYTHON_FAST_THREAD_STATE
static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb)
#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
#endif
{
    PyObject *local_type, *local_value, *local_tb;
#if CYTHON_FAST_THREAD_STATE
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    local_type = tstate->curexc_type;
    local_value = tstate->curexc_value;
    local_tb = tstate->curexc_traceback;
    tstate->curexc_type = 0;
    tstate->curexc_value = 0;
    tstate->curexc_traceback = 0;
#else
    PyErr_Fetch(&local_type, &local_value, &local_tb);
#endif
    PyErr_NormalizeException(&local_type, &local_value, &local_tb);
#if CYTHON_FAST_THREAD_STATE
    if (unlikely(tstate->curexc_type))
#else
    if (unlikely(PyErr_Occurred()))
#endif
        goto bad;
    #if PY_MAJOR_VERSION >= 3
    if (local_tb) {
        if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
            goto bad;
    }
    #endif
    Py_XINCREF(local_tb);
    Py_XINCREF(local_type);
    Py_XINCREF(local_value);
    *type = local_type;
    *value = local_value;
    *tb = local_tb;
#if CYTHON_FAST_THREAD_STATE
    #if CYTHON_USE_EXC_INFO_STACK
    {
        _PyErr_StackItem *exc_info = tstate->exc_info;
        tmp_type = exc_info->exc_type;
        tmp_value = exc_info->exc_value;
        tmp_tb = exc_info->exc_traceback;
        exc_info->exc_type = local_type;
        exc_info->exc_value = local_value;
        exc_info->exc_traceback = local_tb;
    }
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = local_type;
    tstate->exc_value = local_value;
    tstate->exc_traceback = local_tb;
    #endif
    Py_XDECREF(tmp_type);
    Py_XDECREF(tmp_value);
    Py_XDECREF(tmp_tb);
#else
    PyErr_SetExcInfo(local_type, local_value, local_tb);
#endif
    return 0;
bad:
    *type = 0;
    *value = 0;
    *tb = 0;
    Py_XDECREF(local_type);
    Py_XDECREF(local_value);
    Py_XDECREF(local_tb);
    return -1;
}

/* DivInt[Py_ssize_t] */
static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) {
    Py_ssize_t q = a / b;
    Py_ssize_t r = a - q*b;
    q -= ((r != 0) & ((r ^ b) < 0));
    return q;
}

/* decode_c_string */
static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
         const char* cstring, Py_ssize_t start, Py_ssize_t stop,
         const char* encoding, const char* errors,
         PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) {
    Py_ssize_t length;
    if (unlikely((start < 0) | (stop < 0))) {
        size_t slen = strlen(cstring);
        if (unlikely(slen > (size_t) PY_SSIZE_T_MAX)) {
            PyErr_SetString(PyExc_OverflowError,
                            "c-string too long to convert to Python");
            return NULL;
        }
        length = (Py_ssize_t) slen;
        if (start < 0) {
            start += length;
            if (start < 0)
                start = 0;
        }
        if (stop < 0)
            stop += length;
    }
    if (unlikely(stop <= start))
        return __Pyx_NewRef(__pyx_empty_unicode);
    length = stop - start;
    cstring += start;
    if (decode_func) {
        return decode_func(cstring, length, errors);
    } else {
        return PyUnicode_Decode(cstring, length, encoding, errors);
    }
}

/* SwapException */
#if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    #if CYTHON_USE_EXC_INFO_STACK
    _PyErr_StackItem *exc_info = tstate->exc_info;
    tmp_type = exc_info->exc_type;
    tmp_value = exc_info->exc_value;
    tmp_tb = exc_info->exc_traceback;
    exc_info->exc_type = *type;
    exc_info->exc_value = *value;
    exc_info->exc_traceback = *tb;
    #else
    tmp_type = tstate->exc_type;
    tmp_value = tstate->exc_value;
    tmp_tb = tstate->exc_traceback;
    tstate->exc_type = *type;
    tstate->exc_value = *value;
    tstate->exc_traceback = *tb;
    #endif
    *type = tmp_type;
    *value = tmp_value;
    *tb = tmp_tb;
}
#else
static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) {
    PyObject *tmp_type, *tmp_value, *tmp_tb;
    PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb);
    PyErr_SetExcInfo(*type, *value, *tb);
    *type = tmp_type;
    *value = tmp_value;
    *tb = tmp_tb;
}
#endif

/* FastTypeChecks */
#if CYTHON_COMPILING_IN_CPYTHON
static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
    while (a) {
        a = a->tp_base;
        if (a == b)
            return 1;
    }
    return b == &PyBaseObject_Type;
}
static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
    PyObject *mro;
    if (a == b) return 1;
    mro = a->tp_mro;
    if (likely(mro)) {
        Py_ssize_t i, n;
        n = PyTuple_GET_SIZE(mro);
        for (i = 0; i < n; i++) {
            if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
                return 1;
        }
        return 0;
    }
    return __Pyx_InBases(a, b);
}
#if PY_MAJOR_VERSION == 2
static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
    PyObject *exception, *value, *tb;
    int res;
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&exception, &value, &tb);
    res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
    if (unlikely(res == -1)) {
        PyErr_WriteUnraisable(err);
        res = 0;
    }
    if (!res) {
        res = PyObject_IsSubclass(err, exc_type2);
        if (unlikely(res == -1)) {
            PyErr_WriteUnraisable(err);
            res = 0;
        }
    }
    __Pyx_ErrRestore(exception, value, tb);
    return res;
}
#else
static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
    int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0;
    if (!res) {
        res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
    }
    return res;
}
#endif
static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
    Py_ssize_t i, n;
    assert(PyExceptionClass_Check(exc_type));
    n = PyTuple_GET_SIZE(tuple);
#if PY_MAJOR_VERSION >= 3
    for (i=0; i<n; i++) {
        if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
    }
#endif
    for (i=0; i<n; i++) {
        PyObject *t = PyTuple_GET_ITEM(tuple, i);
        #if PY_MAJOR_VERSION < 3
        if (likely(exc_type == t)) return 1;
        #endif
        if (likely(PyExceptionClass_Check(t))) {
            if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
        } else {
        }
    }
    return 0;
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
    if (likely(err == exc_type)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        if (likely(PyExceptionClass_Check(exc_type))) {
            return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
        } else if (likely(PyTuple_Check(exc_type))) {
            return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
        } else {
        }
    }
    return PyErr_GivenExceptionMatches(err, exc_type);
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
    assert(PyExceptionClass_Check(exc_type1));
    assert(PyExceptionClass_Check(exc_type2));
    if (likely(err == exc_type1 || err == exc_type2)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
    }
    return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
}
#endif

/* None */
static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) {
    PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname);
}

/* DivInt[long] */
static CYTHON_INLINE long __Pyx_div_long(long a, long b) {
    long q = a / b;
    long r = a - q*b;
    q -= ((r != 0) & ((r ^ b) < 0));
    return q;
}

/* PyObject_GenericGetAttrNoDict */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) {
    PyErr_Format(PyExc_AttributeError,
#if PY_MAJOR_VERSION >= 3
                 "'%.50s' object has no attribute '%U'",
                 tp->tp_name, attr_name);
#else
                 "'%.50s' object has no attribute '%.400s'",
                 tp->tp_name, PyString_AS_STRING(attr_name));
#endif
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) {
    PyObject *descr;
    PyTypeObject *tp = Py_TYPE(obj);
    if (unlikely(!PyString_Check(attr_name))) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    assert(!tp->tp_dictoffset);
    descr = _PyType_Lookup(tp, attr_name);
    if (unlikely(!descr)) {
        return __Pyx_RaiseGenericGetAttributeError(tp, attr_name);
    }
    Py_INCREF(descr);
    #if PY_MAJOR_VERSION < 3
    if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS)))
    #endif
    {
        descrgetfunc f = Py_TYPE(descr)->tp_descr_get;
        if (unlikely(f)) {
            PyObject *res = f(descr, obj, (PyObject *)tp);
            Py_DECREF(descr);
            return res;
        }
    }
    return descr;
}
#endif

/* PyObject_GenericGetAttr */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) {
    if (unlikely(Py_TYPE(obj)->tp_dictoffset)) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name);
}
#endif

/* SetVTable */
static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
#if PY_VERSION_HEX >= 0x02070000
    PyObject *ob = PyCapsule_New(vtable, 0, 0);
#else
    PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
#endif
    if (!ob)
        goto bad;
    if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0)
        goto bad;
    Py_DECREF(ob);
    return 0;
bad:
    Py_XDECREF(ob);
    return -1;
}

/* PyObjectGetAttrStrNoError */
static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) {
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
        __Pyx_PyErr_Clear();
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) {
    PyObject *result;
#if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1
    PyTypeObject* tp = Py_TYPE(obj);
    if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) {
        return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1);
    }
#endif
    result = __Pyx_PyObject_GetAttrStr(obj, attr_name);
    if (unlikely(!result)) {
        __Pyx_PyObject_GetAttrStr_ClearAttributeError();
    }
    return result;
}

/* SetupReduce */
static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
  int ret;
  PyObject *name_attr;
  name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name_2);
  if (likely(name_attr)) {
      ret = PyObject_RichCompareBool(name_attr, name, Py_EQ);
  } else {
      ret = -1;
  }
  if (unlikely(ret < 0)) {
      PyErr_Clear();
      ret = 0;
  }
  Py_XDECREF(name_attr);
  return ret;
}
static int __Pyx_setup_reduce(PyObject* type_obj) {
    int ret = 0;
    PyObject *object_reduce = NULL;
    PyObject *object_getstate = NULL;
    PyObject *object_reduce_ex = NULL;
    PyObject *reduce = NULL;
    PyObject *reduce_ex = NULL;
    PyObject *reduce_cython = NULL;
    PyObject *setstate = NULL;
    PyObject *setstate_cython = NULL;
    PyObject *getstate = NULL;
#if CYTHON_USE_PYTYPE_LOOKUP
    getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate);
#else
    getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate);
    if (!getstate && PyErr_Occurred()) {
        goto __PYX_BAD;
    }
#endif
    if (getstate) {
#if CYTHON_USE_PYTYPE_LOOKUP
        object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate);
#else
        object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate);
        if (!object_getstate && PyErr_Occurred()) {
            goto __PYX_BAD;
        }
#endif
        if (object_getstate != getstate) {
            goto __PYX_GOOD;
        }
    }
#if CYTHON_USE_PYTYPE_LOOKUP
    object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
#else
    object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD;
#endif
    reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD;
    if (reduce_ex == object_reduce_ex) {
#if CYTHON_USE_PYTYPE_LOOKUP
        object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
#else
        object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD;
#endif
        reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD;
        if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
            reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython);
            if (likely(reduce_cython)) {
                ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
            } else if (reduce == object_reduce || PyErr_Occurred()) {
                goto __PYX_BAD;
            }
            setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate);
            if (!setstate) PyErr_Clear();
            if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
                setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython);
                if (likely(setstate_cython)) {
                    ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                    ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD;
                } else if (!setstate || PyErr_Occurred()) {
                    goto __PYX_BAD;
                }
            }
            PyType_Modified((PyTypeObject*)type_obj);
        }
    }
    goto __PYX_GOOD;
__PYX_BAD:
    if (!PyErr_Occurred())
        PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name);
    ret = -1;
__PYX_GOOD:
#if !CYTHON_USE_PYTYPE_LOOKUP
    Py_XDECREF(object_reduce);
    Py_XDECREF(object_reduce_ex);
    Py_XDECREF(object_getstate);
    Py_XDECREF(getstate);
#endif
    Py_XDECREF(reduce);
    Py_XDECREF(reduce_ex);
    Py_XDECREF(reduce_cython);
    Py_XDECREF(setstate);
    Py_XDECREF(setstate_cython);
    return ret;
}

/* TypeImport */
#ifndef __PYX_HAVE_RT_ImportType
#define __PYX_HAVE_RT_ImportType
static PyTypeObject *__Pyx_ImportType(PyObject *module, const char *module_name, const char *class_name,
    size_t size, enum __Pyx_ImportType_CheckSize check_size)
{
    PyObject *result = 0;
    char warning[200];
    Py_ssize_t basicsize;
#ifdef Py_LIMITED_API
    PyObject *py_basicsize;
#endif
    result = PyObject_GetAttrString(module, class_name);
    if (!result)
        goto bad;
    if (!PyType_Check(result)) {
        PyErr_Format(PyExc_TypeError,
            "%.200s.%.200s is not a type object",
            module_name, class_name);
        goto bad;
    }
#ifndef Py_LIMITED_API
    basicsize = ((PyTypeObject *)result)->tp_basicsize;
#else
    py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
    if (!py_basicsize)
        goto bad;
    basicsize = PyLong_AsSsize_t(py_basicsize);
    Py_DECREF(py_basicsize);
    py_basicsize = 0;
    if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
        goto bad;
#endif
    if ((size_t)basicsize < size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    if (check_size == __Pyx_ImportType_CheckSize_Error && (size_t)basicsize != size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    else if (check_size == __Pyx_ImportType_CheckSize_Warn && (size_t)basicsize > size) {
        PyOS_snprintf(warning, sizeof(warning),
            "%s.%s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
    }
    return (PyTypeObject *)result;
bad:
    Py_XDECREF(result);
    return NULL;
}
#endif

/* GetVTable */
static void* __Pyx_GetVtable(PyObject *dict) {
    void* ptr;
    PyObject *ob = PyObject_GetItem(dict, __pyx_n_s_pyx_vtable);
    if (!ob)
        goto bad;
#if PY_VERSION_HEX >= 0x02070000
    ptr = PyCapsule_GetPointer(ob, 0);
#else
    ptr = PyCObject_AsVoidPtr(ob);
#endif
    if (!ptr && !PyErr_Occurred())
        PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type");
    Py_DECREF(ob);
    return ptr;
bad:
    Py_XDECREF(ob);
    return NULL;
}

/* CalculateMetaclass */
static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) {
    Py_ssize_t i, nbases = PyTuple_GET_SIZE(bases);
    for (i=0; i < nbases; i++) {
        PyTypeObject *tmptype;
        PyObject *tmp = PyTuple_GET_ITEM(bases, i);
        tmptype = Py_TYPE(tmp);
#if PY_MAJOR_VERSION < 3
        if (tmptype == &PyClass_Type)
            continue;
#endif
        if (!metaclass) {
            metaclass = tmptype;
            continue;
        }
        if (PyType_IsSubtype(metaclass, tmptype))
            continue;
        if (PyType_IsSubtype(tmptype, metaclass)) {
            metaclass = tmptype;
            continue;
        }
        PyErr_SetString(PyExc_TypeError,
                        "metaclass conflict: "
                        "the metaclass of a derived class "
                        "must be a (non-strict) subclass "
                        "of the metaclasses of all its bases");
        return NULL;
    }
    if (!metaclass) {
#if PY_MAJOR_VERSION < 3
        metaclass = &PyClass_Type;
#else
        metaclass = &PyType_Type;
#endif
    }
    Py_INCREF((PyObject*) metaclass);
    return (PyObject*) metaclass;
}

/* Py3ClassCreate */
static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name,
                                           PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) {
    PyObject *ns;
    if (metaclass) {
        PyObject *prep = __Pyx_PyObject_GetAttrStr(metaclass, __pyx_n_s_prepare);
        if (prep) {
            PyObject *pargs = PyTuple_Pack(2, name, bases);
            if (unlikely(!pargs)) {
                Py_DECREF(prep);
                return NULL;
            }
            ns = PyObject_Call(prep, pargs, mkw);
            Py_DECREF(prep);
            Py_DECREF(pargs);
        } else {
            if (unlikely(!PyErr_ExceptionMatches(PyExc_AttributeError)))
                return NULL;
            PyErr_Clear();
            ns = PyDict_New();
        }
    } else {
        ns = PyDict_New();
    }
    if (unlikely(!ns))
        return NULL;
    if (unlikely(PyObject_SetItem(ns, __pyx_n_s_module, modname) < 0)) goto bad;
    if (unlikely(PyObject_SetItem(ns, __pyx_n_s_qualname, qualname) < 0)) goto bad;
    if (unlikely(doc && PyObject_SetItem(ns, __pyx_n_s_doc, doc) < 0)) goto bad;
    return ns;
bad:
    Py_DECREF(ns);
    return NULL;
}
static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases,
                                      PyObject *dict, PyObject *mkw,
                                      int calculate_metaclass, int allow_py2_metaclass) {
    PyObject *result, *margs;
    PyObject *owned_metaclass = NULL;
    if (allow_py2_metaclass) {
        owned_metaclass = PyObject_GetItem(dict, __pyx_n_s_metaclass);
        if (owned_metaclass) {
            metaclass = owned_metaclass;
        } else if (likely(PyErr_ExceptionMatches(PyExc_KeyError))) {
            PyErr_Clear();
        } else {
            return NULL;
        }
    }
    if (calculate_metaclass && (!metaclass || PyType_Check(metaclass))) {
        metaclass = __Pyx_CalculateMetaclass((PyTypeObject*) metaclass, bases);
        Py_XDECREF(owned_metaclass);
        if (unlikely(!metaclass))
            return NULL;
        owned_metaclass = metaclass;
    }
    margs = PyTuple_Pack(3, name, bases, dict);
    if (unlikely(!margs)) {
        result = NULL;
    } else {
        result = PyObject_Call(metaclass, margs, mkw);
        Py_DECREF(margs);
    }
    Py_XDECREF(owned_metaclass);
    return result;
}

/* CLineInTraceback */
#ifndef CYTHON_CLINE_IN_TRACEBACK
static int __Pyx_CLineForTraceback(CYTHON_UNUSED PyThreadState *tstate, int c_line) {
    PyObject *use_cline;
    PyObject *ptype, *pvalue, *ptraceback;
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject **cython_runtime_dict;
#endif
    if (unlikely(!__pyx_cython_runtime)) {
        return c_line;
    }
    __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
#if CYTHON_COMPILING_IN_CPYTHON
    cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
    if (likely(cython_runtime_dict)) {
        __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
            use_cline, *cython_runtime_dict,
            __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
    } else
#endif
    {
      PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
      if (use_cline_obj) {
        use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
        Py_DECREF(use_cline_obj);
      } else {
        PyErr_Clear();
        use_cline = NULL;
      }
    }
    if (!use_cline) {
        c_line = 0;
        (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
    }
    else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
        c_line = 0;
    }
    __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
    return c_line;
}
#endif

/* CodeObjectCache */
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
    int start = 0, mid = 0, end = count - 1;
    if (end >= 0 && code_line > entries[end].code_line) {
        return count;
    }
    while (start < end) {
        mid = start + (end - start) / 2;
        if (code_line < entries[mid].code_line) {
            end = mid;
        } else if (code_line > entries[mid].code_line) {
             start = mid + 1;
        } else {
            return mid;
        }
    }
    if (code_line <= entries[mid].code_line) {
        return mid;
    } else {
        return mid + 1;
    }
}
static PyCodeObject *__pyx_find_code_object(int code_line) {
    PyCodeObject* code_object;
    int pos;
    if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
        return NULL;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
        return NULL;
    }
    code_object = __pyx_code_cache.entries[pos].code_object;
    Py_INCREF(code_object);
    return code_object;
}
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
    int pos, i;
    __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
    if (unlikely(!code_line)) {
        return;
    }
    if (unlikely(!entries)) {
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
        if (likely(entries)) {
            __pyx_code_cache.entries = entries;
            __pyx_code_cache.max_count = 64;
            __pyx_code_cache.count = 1;
            entries[0].code_line = code_line;
            entries[0].code_object = code_object;
            Py_INCREF(code_object);
        }
        return;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
        PyCodeObject* tmp = entries[pos].code_object;
        entries[pos].code_object = code_object;
        Py_DECREF(tmp);
        return;
    }
    if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
        int new_max = __pyx_code_cache.max_count + 64;
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
            __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry));
        if (unlikely(!entries)) {
            return;
        }
        __pyx_code_cache.entries = entries;
        __pyx_code_cache.max_count = new_max;
    }
    for (i=__pyx_code_cache.count; i>pos; i--) {
        entries[i] = entries[i-1];
    }
    entries[pos].code_line = code_line;
    entries[pos].code_object = code_object;
    __pyx_code_cache.count++;
    Py_INCREF(code_object);
}

/* AddTraceback */
#include "compile.h"
#include "frameobject.h"
#include "traceback.h"
#if PY_VERSION_HEX >= 0x030b00a6
  #ifndef Py_BUILD_CORE
    #define Py_BUILD_CORE 1
  #endif
  #include "internal/pycore_frame.h"
#endif
static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
            const char *funcname, int c_line,
            int py_line, const char *filename) {
    PyCodeObject *py_code = NULL;
    PyObject *py_funcname = NULL;
    #if PY_MAJOR_VERSION < 3
    PyObject *py_srcfile = NULL;
    py_srcfile = PyString_FromString(filename);
    if (!py_srcfile) goto bad;
    #endif
    if (c_line) {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        if (!py_funcname) goto bad;
        #else
        py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        if (!py_funcname) goto bad;
        funcname = PyUnicode_AsUTF8(py_funcname);
        if (!funcname) goto bad;
        #endif
    }
    else {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromString(funcname);
        if (!py_funcname) goto bad;
        #endif
    }
    #if PY_MAJOR_VERSION < 3
    py_code = __Pyx_PyCode_New(
        0,
        0,
        0,
        0,
        0,
        __pyx_empty_bytes, /*PyObject *code,*/
        __pyx_empty_tuple, /*PyObject *consts,*/
        __pyx_empty_tuple, /*PyObject *names,*/
        __pyx_empty_tuple, /*PyObject *varnames,*/
        __pyx_empty_tuple, /*PyObject *freevars,*/
        __pyx_empty_tuple, /*PyObject *cellvars,*/
        py_srcfile,   /*PyObject *filename,*/
        py_funcname,  /*PyObject *name,*/
        py_line,
        __pyx_empty_bytes  /*PyObject *lnotab*/
    );
    Py_DECREF(py_srcfile);
    #else
    py_code = PyCode_NewEmpty(filename, funcname, py_line);
    #endif
    Py_XDECREF(py_funcname);  // XDECREF since it's only set on Py3 if cline
    return py_code;
bad:
    Py_XDECREF(py_funcname);
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(py_srcfile);
    #endif
    return NULL;
}
static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyFrameObject *py_frame = 0;
    PyThreadState *tstate = __Pyx_PyThreadState_Current;
    PyObject *ptype, *pvalue, *ptraceback;
    if (c_line) {
        c_line = __Pyx_CLineForTraceback(tstate, c_line);
    }
    py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
    if (!py_code) {
        __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
        py_code = __Pyx_CreateCodeObjectForTraceback(
            funcname, c_line, py_line, filename);
        if (!py_code) {
            /* If the code object creation fails, then we should clear the
               fetched exception references and propagate the new exception */
            Py_XDECREF(ptype);
            Py_XDECREF(pvalue);
            Py_XDECREF(ptraceback);
            goto bad;
        }
        __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
        __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
    }
    py_frame = PyFrame_New(
        tstate,            /*PyThreadState *tstate,*/
        py_code,           /*PyCodeObject *code,*/
        __pyx_d,    /*PyObject *globals,*/
        0                  /*PyObject *locals*/
    );
    if (!py_frame) goto bad;
    __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
    PyTraceBack_Here(py_frame);
bad:
    Py_XDECREF(py_code);
    Py_XDECREF(py_frame);
}

/* CIntFromPyVerify */
#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
    {\
        func_type value = func_value;\
        if (sizeof(target_type) < sizeof(func_type)) {\
            if (unlikely(value != (func_type) (target_type) value)) {\
                func_type zero = 0;\
                if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
                    return (target_type) -1;\
                if (is_unsigned && unlikely(value < zero))\
                    goto raise_neg_overflow;\
                else\
                    goto raise_overflow;\
            }\
        }\
        return (target_type) value;\
    }

#if PY_MAJOR_VERSION < 3
static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) {
    if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags);
        if (__Pyx_TypeCheck(obj, __pyx_ptype_7cpython_5array_array)) return __pyx_pw_7cpython_5array_5array_1__getbuffer__(obj, view, flags);
        if (__Pyx_TypeCheck(obj, __pyx_array_type)) return __pyx_array_getbuffer(obj, view, flags);
        if (__Pyx_TypeCheck(obj, __pyx_memoryview_type)) return __pyx_memoryview_getbuffer(obj, view, flags);
    PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name);
    return -1;
}
static void __Pyx_ReleaseBuffer(Py_buffer *view) {
    PyObject *obj = view->obj;
    if (!obj) return;
    if (PyObject_CheckBuffer(obj)) {
        PyBuffer_Release(view);
        return;
    }
    if ((0)) {}
        else if (__Pyx_TypeCheck(obj, __pyx_ptype_7cpython_5array_array)) __pyx_pw_7cpython_5array_5array_3__releasebuffer__(obj, view);
    view->obj = NULL;
    Py_DECREF(obj);
}
#endif


/* MemviewSliceIsContig */
static int
__pyx_memviewslice_is_contig(const __Pyx_memviewslice mvs, char order, int ndim)
{
    int i, index, step, start;
    Py_ssize_t itemsize = mvs.memview->view.itemsize;
    if (order == 'F') {
        step = 1;
        start = 0;
    } else {
        step = -1;
        start = ndim - 1;
    }
    for (i = 0; i < ndim; i++) {
        index = start + step * i;
        if (mvs.suboffsets[index] >= 0 || mvs.strides[index] != itemsize)
            return 0;
        itemsize *= mvs.shape[index];
    }
    return 1;
}

/* OverlappingSlices */
static void
__pyx_get_array_memory_extents(__Pyx_memviewslice *slice,
                               void **out_start, void **out_end,
                               int ndim, size_t itemsize)
{
    char *start, *end;
    int i;
    start = end = slice->data;
    for (i = 0; i < ndim; i++) {
        Py_ssize_t stride = slice->strides[i];
        Py_ssize_t extent = slice->shape[i];
        if (extent == 0) {
            *out_start = *out_end = start;
            return;
        } else {
            if (stride > 0)
                end += stride * (extent - 1);
            else
                start += stride * (extent - 1);
        }
    }
    *out_start = start;
    *out_end = end + itemsize;
}
static int
__pyx_slices_overlap(__Pyx_memviewslice *slice1,
                     __Pyx_memviewslice *slice2,
                     int ndim, size_t itemsize)
{
    void *start1, *end1, *start2, *end2;
    __pyx_get_array_memory_extents(slice1, &start1, &end1, ndim, itemsize);
    __pyx_get_array_memory_extents(slice2, &start2, &end2, ndim, itemsize);
    return (start1 < end2) && (start2 < end1);
}

/* Capsule */
static CYTHON_INLINE PyObject *
__pyx_capsule_create(void *p, CYTHON_UNUSED const char *sig)
{
    PyObject *cobj;
#if PY_VERSION_HEX >= 0x02070000
    cobj = PyCapsule_New(p, sig, NULL);
#else
    cobj = PyCObject_FromVoidPtr(p, NULL);
#endif
    return cobj;
}

/* IsLittleEndian */
static CYTHON_INLINE int __Pyx_Is_Little_Endian(void)
{
  union {
    uint32_t u32;
    uint8_t u8[4];
  } S;
  S.u32 = 0x01020304;
  return S.u8[0] == 4;
}

/* BufferFormatCheck */
static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
                              __Pyx_BufFmt_StackElem* stack,
                              __Pyx_TypeInfo* type) {
  stack[0].field = &ctx->root;
  stack[0].parent_offset = 0;
  ctx->root.type = type;
  ctx->root.name = "buffer dtype";
  ctx->root.offset = 0;
  ctx->head = stack;
  ctx->head->field = &ctx->root;
  ctx->fmt_offset = 0;
  ctx->head->parent_offset = 0;
  ctx->new_packmode = '@';
  ctx->enc_packmode = '@';
  ctx->new_count = 1;
  ctx->enc_count = 0;
  ctx->enc_type = 0;
  ctx->is_complex = 0;
  ctx->is_valid_array = 0;
  ctx->struct_alignment = 0;
  while (type->typegroup == 'S') {
    ++ctx->head;
    ctx->head->field = type->fields;
    ctx->head->parent_offset = 0;
    type = type->fields->type;
  }
}
static int __Pyx_BufFmt_ParseNumber(const char** ts) {
    int count;
    const char* t = *ts;
    if (*t < '0' || *t > '9') {
      return -1;
    } else {
        count = *t++ - '0';
        while (*t >= '0' && *t <= '9') {
            count *= 10;
            count += *t++ - '0';
        }
    }
    *ts = t;
    return count;
}
static int __Pyx_BufFmt_ExpectNumber(const char **ts) {
    int number = __Pyx_BufFmt_ParseNumber(ts);
    if (number == -1)
        PyErr_Format(PyExc_ValueError,\
                     "Does not understand character buffer dtype format string ('%c')", **ts);
    return number;
}
static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) {
  PyErr_Format(PyExc_ValueError,
               "Unexpected format string character: '%c'", ch);
}
static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) {
  switch (ch) {
    case '?': return "'bool'";
    case 'c': return "'char'";
    case 'b': return "'signed char'";
    case 'B': return "'unsigned char'";
    case 'h': return "'short'";
    case 'H': return "'unsigned short'";
    case 'i': return "'int'";
    case 'I': return "'unsigned int'";
    case 'l': return "'long'";
    case 'L': return "'unsigned long'";
    case 'q': return "'long long'";
    case 'Q': return "'unsigned long long'";
    case 'f': return (is_complex ? "'complex float'" : "'float'");
    case 'd': return (is_complex ? "'complex double'" : "'double'");
    case 'g': return (is_complex ? "'complex long double'" : "'long double'");
    case 'T': return "a struct";
    case 'O': return "Python object";
    case 'P': return "a pointer";
    case 's': case 'p': return "a string";
    case 0: return "end";
    default: return "unparseable format string";
  }
}
static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return 2;
    case 'i': case 'I': case 'l': case 'L': return 4;
    case 'q': case 'Q': return 8;
    case 'f': return (is_complex ? 8 : 4);
    case 'd': return (is_complex ? 16 : 8);
    case 'g': {
      PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g')..");
      return 0;
    }
    case 'O': case 'P': return sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(short);
    case 'i': case 'I': return sizeof(int);
    case 'l': case 'L': return sizeof(long);
    #ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(PY_LONG_LONG);
    #endif
    case 'f': return sizeof(float) * (is_complex ? 2 : 1);
    case 'd': return sizeof(double) * (is_complex ? 2 : 1);
    case 'g': return sizeof(long double) * (is_complex ? 2 : 1);
    case 'O': case 'P': return sizeof(void*);
    default: {
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
  }
}
typedef struct { char c; short x; } __Pyx_st_short;
typedef struct { char c; int x; } __Pyx_st_int;
typedef struct { char c; long x; } __Pyx_st_long;
typedef struct { char c; float x; } __Pyx_st_float;
typedef struct { char c; double x; } __Pyx_st_double;
typedef struct { char c; long double x; } __Pyx_st_longdouble;
typedef struct { char c; void *x; } __Pyx_st_void_p;
#ifdef HAVE_LONG_LONG
typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong;
#endif
static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short);
    case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int);
    case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long);
#ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG);
#endif
    case 'f': return sizeof(__Pyx_st_float) - sizeof(float);
    case 'd': return sizeof(__Pyx_st_double) - sizeof(double);
    case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double);
    case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
/* These are for computing the padding at the end of the struct to align
   on the first member of the struct. This will probably the same as above,
   but we don't have any guarantees.
 */
typedef struct { short x; char c; } __Pyx_pad_short;
typedef struct { int x; char c; } __Pyx_pad_int;
typedef struct { long x; char c; } __Pyx_pad_long;
typedef struct { float x; char c; } __Pyx_pad_float;
typedef struct { double x; char c; } __Pyx_pad_double;
typedef struct { long double x; char c; } __Pyx_pad_longdouble;
typedef struct { void *x; char c; } __Pyx_pad_void_p;
#ifdef HAVE_LONG_LONG
typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong;
#endif
static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) {
  switch (ch) {
    case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1;
    case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short);
    case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int);
    case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long);
#ifdef HAVE_LONG_LONG
    case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG);
#endif
    case 'f': return sizeof(__Pyx_pad_float) - sizeof(float);
    case 'd': return sizeof(__Pyx_pad_double) - sizeof(double);
    case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double);
    case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*);
    default:
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
}
static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) {
  switch (ch) {
    case 'c':
        return 'H';
    case 'b': case 'h': case 'i':
    case 'l': case 'q': case 's': case 'p':
        return 'I';
    case '?': case 'B': case 'H': case 'I': case 'L': case 'Q':
        return 'U';
    case 'f': case 'd': case 'g':
        return (is_complex ? 'C' : 'R');
    case 'O':
        return 'O';
    case 'P':
        return 'P';
    default: {
      __Pyx_BufFmt_RaiseUnexpectedChar(ch);
      return 0;
    }
  }
}
static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) {
  if (ctx->head == NULL || ctx->head->field == &ctx->root) {
    const char* expected;
    const char* quote;
    if (ctx->head == NULL) {
      expected = "end";
      quote = "";
    } else {
      expected = ctx->head->field->type->name;
      quote = "'";
    }
    PyErr_Format(PyExc_ValueError,
                 "Buffer dtype mismatch, expected %s%s%s but got %s",
                 quote, expected, quote,
                 __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex));
  } else {
    __Pyx_StructField* field = ctx->head->field;
    __Pyx_StructField* parent = (ctx->head - 1)->field;
    PyErr_Format(PyExc_ValueError,
                 "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'",
                 field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex),
                 parent->type->name, field->name);
  }
}
static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) {
  char group;
  size_t size, offset, arraysize = 1;
  if (ctx->enc_type == 0) return 0;
  if (ctx->head->field->type->arraysize[0]) {
    int i, ndim = 0;
    if (ctx->enc_type == 's' || ctx->enc_type == 'p') {
        ctx->is_valid_array = ctx->head->field->type->ndim == 1;
        ndim = 1;
        if (ctx->enc_count != ctx->head->field->type->arraysize[0]) {
            PyErr_Format(PyExc_ValueError,
                         "Expected a dimension of size %zu, got %zu",
                         ctx->head->field->type->arraysize[0], ctx->enc_count);
            return -1;
        }
    }
    if (!ctx->is_valid_array) {
      PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d",
                   ctx->head->field->type->ndim, ndim);
      return -1;
    }
    for (i = 0; i < ctx->head->field->type->ndim; i++) {
      arraysize *= ctx->head->field->type->arraysize[i];
    }
    ctx->is_valid_array = 0;
    ctx->enc_count = 1;
  }
  group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex);
  do {
    __Pyx_StructField* field = ctx->head->field;
    __Pyx_TypeInfo* type = field->type;
    if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') {
      size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex);
    } else {
      size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex);
    }
    if (ctx->enc_packmode == '@') {
      size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex);
      size_t align_mod_offset;
      if (align_at == 0) return -1;
      align_mod_offset = ctx->fmt_offset % align_at;
      if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset;
      if (ctx->struct_alignment == 0)
          ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type,
                                                                 ctx->is_complex);
    }
    if (type->size != size || type->typegroup != group) {
      if (type->typegroup == 'C' && type->fields != NULL) {
        size_t parent_offset = ctx->head->parent_offset + field->offset;
        ++ctx->head;
        ctx->head->field = type->fields;
        ctx->head->parent_offset = parent_offset;
        continue;
      }
      if ((type->typegroup == 'H' || group == 'H') && type->size == size) {
      } else {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return -1;
      }
    }
    offset = ctx->head->parent_offset + field->offset;
    if (ctx->fmt_offset != offset) {
      PyErr_Format(PyExc_ValueError,
                   "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected",
                   (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset);
      return -1;
    }
    ctx->fmt_offset += size;
    if (arraysize)
      ctx->fmt_offset += (arraysize - 1) * size;
    --ctx->enc_count;
    while (1) {
      if (field == &ctx->root) {
        ctx->head = NULL;
        if (ctx->enc_count != 0) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return -1;
        }
        break;
      }
      ctx->head->field = ++field;
      if (field->type == NULL) {
        --ctx->head;
        field = ctx->head->field;
        continue;
      } else if (field->type->typegroup == 'S') {
        size_t parent_offset = ctx->head->parent_offset + field->offset;
        if (field->type->fields->type == NULL) continue;
        field = field->type->fields;
        ++ctx->head;
        ctx->head->field = field;
        ctx->head->parent_offset = parent_offset;
        break;
      } else {
        break;
      }
    }
  } while (ctx->enc_count);
  ctx->enc_type = 0;
  ctx->is_complex = 0;
  return 0;
}
static PyObject *
__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp)
{
    const char *ts = *tsp;
    int i = 0, number, ndim;
    ++ts;
    if (ctx->new_count != 1) {
        PyErr_SetString(PyExc_ValueError,
                        "Cannot handle repeated arrays in format string");
        return NULL;
    }
    if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
    ndim = ctx->head->field->type->ndim;
    while (*ts && *ts != ')') {
        switch (*ts) {
            case ' ': case '\f': case '\r': case '\n': case '\t': case '\v':  continue;
            default:  break;
        }
        number = __Pyx_BufFmt_ExpectNumber(&ts);
        if (number == -1) return NULL;
        if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i])
            return PyErr_Format(PyExc_ValueError,
                        "Expected a dimension of size %zu, got %d",
                        ctx->head->field->type->arraysize[i], number);
        if (*ts != ',' && *ts != ')')
            return PyErr_Format(PyExc_ValueError,
                                "Expected a comma in format string, got '%c'", *ts);
        if (*ts == ',') ts++;
        i++;
    }
    if (i != ndim)
        return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d",
                            ctx->head->field->type->ndim, i);
    if (!*ts) {
        PyErr_SetString(PyExc_ValueError,
                        "Unexpected end of format string, expected ')'");
        return NULL;
    }
    ctx->is_valid_array = 1;
    ctx->new_count = 1;
    *tsp = ++ts;
    return Py_None;
}
static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) {
  int got_Z = 0;
  while (1) {
    switch(*ts) {
      case 0:
        if (ctx->enc_type != 0 && ctx->head == NULL) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return NULL;
        }
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        if (ctx->head != NULL) {
          __Pyx_BufFmt_RaiseExpected(ctx);
          return NULL;
        }
        return ts;
      case ' ':
      case '\r':
      case '\n':
        ++ts;
        break;
      case '<':
        if (!__Pyx_Is_Little_Endian()) {
          PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler");
          return NULL;
        }
        ctx->new_packmode = '=';
        ++ts;
        break;
      case '>':
      case '!':
        if (__Pyx_Is_Little_Endian()) {
          PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler");
          return NULL;
        }
        ctx->new_packmode = '=';
        ++ts;
        break;
      case '=':
      case '@':
      case '^':
        ctx->new_packmode = *ts++;
        break;
      case 'T':
        {
          const char* ts_after_sub;
          size_t i, struct_count = ctx->new_count;
          size_t struct_alignment = ctx->struct_alignment;
          ctx->new_count = 1;
          ++ts;
          if (*ts != '{') {
            PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'");
            return NULL;
          }
          if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
          ctx->enc_type = 0;
          ctx->enc_count = 0;
          ctx->struct_alignment = 0;
          ++ts;
          ts_after_sub = ts;
          for (i = 0; i != struct_count; ++i) {
            ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts);
            if (!ts_after_sub) return NULL;
          }
          ts = ts_after_sub;
          if (struct_alignment) ctx->struct_alignment = struct_alignment;
        }
        break;
      case '}':
        {
          size_t alignment = ctx->struct_alignment;
          ++ts;
          if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
          ctx->enc_type = 0;
          if (alignment && ctx->fmt_offset % alignment) {
            ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment);
          }
        }
        return ts;
      case 'x':
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        ctx->fmt_offset += ctx->new_count;
        ctx->new_count = 1;
        ctx->enc_count = 0;
        ctx->enc_type = 0;
        ctx->enc_packmode = ctx->new_packmode;
        ++ts;
        break;
      case 'Z':
        got_Z = 1;
        ++ts;
        if (*ts != 'f' && *ts != 'd' && *ts != 'g') {
          __Pyx_BufFmt_RaiseUnexpectedChar('Z');
          return NULL;
        }
        CYTHON_FALLTHROUGH;
      case '?': case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I':
      case 'l': case 'L': case 'q': case 'Q':
      case 'f': case 'd': case 'g':
      case 'O': case 'p':
        if ((ctx->enc_type == *ts) && (got_Z == ctx->is_complex) &&
            (ctx->enc_packmode == ctx->new_packmode) && (!ctx->is_valid_array)) {
          ctx->enc_count += ctx->new_count;
          ctx->new_count = 1;
          got_Z = 0;
          ++ts;
          break;
        }
        CYTHON_FALLTHROUGH;
      case 's':
        if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL;
        ctx->enc_count = ctx->new_count;
        ctx->enc_packmode = ctx->new_packmode;
        ctx->enc_type = *ts;
        ctx->is_complex = got_Z;
        ++ts;
        ctx->new_count = 1;
        got_Z = 0;
        break;
      case ':':
        ++ts;
        while(*ts != ':') ++ts;
        ++ts;
        break;
      case '(':
        if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL;
        break;
      default:
        {
          int number = __Pyx_BufFmt_ExpectNumber(&ts);
          if (number == -1) return NULL;
          ctx->new_count = (size_t)number;
        }
    }
  }
}

/* TypeInfoCompare */
  static int
__pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b)
{
    int i;
    if (!a || !b)
        return 0;
    if (a == b)
        return 1;
    if (a->size != b->size || a->typegroup != b->typegroup ||
            a->is_unsigned != b->is_unsigned || a->ndim != b->ndim) {
        if (a->typegroup == 'H' || b->typegroup == 'H') {
            return a->size == b->size;
        } else {
            return 0;
        }
    }
    if (a->ndim) {
        for (i = 0; i < a->ndim; i++)
            if (a->arraysize[i] != b->arraysize[i])
                return 0;
    }
    if (a->typegroup == 'S') {
        if (a->flags != b->flags)
            return 0;
        if (a->fields || b->fields) {
            if (!(a->fields && b->fields))
                return 0;
            for (i = 0; a->fields[i].type && b->fields[i].type; i++) {
                __Pyx_StructField *field_a = a->fields + i;
                __Pyx_StructField *field_b = b->fields + i;
                if (field_a->offset != field_b->offset ||
                    !__pyx_typeinfo_cmp(field_a->type, field_b->type))
                    return 0;
            }
            return !a->fields[i].type && !b->fields[i].type;
        }
    }
    return 1;
}

/* MemviewSliceValidateAndInit */
  static int
__pyx_check_strides(Py_buffer *buf, int dim, int ndim, int spec)
{
    if (buf->shape[dim] <= 1)
        return 1;
    if (buf->strides) {
        if (spec & __Pyx_MEMVIEW_CONTIG) {
            if (spec & (__Pyx_MEMVIEW_PTR|__Pyx_MEMVIEW_FULL)) {
                if (unlikely(buf->strides[dim] != sizeof(void *))) {
                    PyErr_Format(PyExc_ValueError,
                                 "Buffer is not indirectly contiguous "
                                 "in dimension %d.", dim);
                    goto fail;
                }
            } else if (unlikely(buf->strides[dim] != buf->itemsize)) {
                PyErr_SetString(PyExc_ValueError,
                                "Buffer and memoryview are not contiguous "
                                "in the same dimension.");
                goto fail;
            }
        }
        if (spec & __Pyx_MEMVIEW_FOLLOW) {
            Py_ssize_t stride = buf->strides[dim];
            if (stride < 0)
                stride = -stride;
            if (unlikely(stride < buf->itemsize)) {
                PyErr_SetString(PyExc_ValueError,
                                "Buffer and memoryview are not contiguous "
                                "in the same dimension.");
                goto fail;
            }
        }
    } else {
        if (unlikely(spec & __Pyx_MEMVIEW_CONTIG && dim != ndim - 1)) {
            PyErr_Format(PyExc_ValueError,
                         "C-contiguous buffer is not contiguous in "
                         "dimension %d", dim);
            goto fail;
        } else if (unlikely(spec & (__Pyx_MEMVIEW_PTR))) {
            PyErr_Format(PyExc_ValueError,
                         "C-contiguous buffer is not indirect in "
                         "dimension %d", dim);
            goto fail;
        } else if (unlikely(buf->suboffsets)) {
            PyErr_SetString(PyExc_ValueError,
                            "Buffer exposes suboffsets but no strides");
            goto fail;
        }
    }
    return 1;
fail:
    return 0;
}
static int
__pyx_check_suboffsets(Py_buffer *buf, int dim, CYTHON_UNUSED int ndim, int spec)
{
    if (spec & __Pyx_MEMVIEW_DIRECT) {
        if (unlikely(buf->suboffsets && buf->suboffsets[dim] >= 0)) {
            PyErr_Format(PyExc_ValueError,
                         "Buffer not compatible with direct access "
                         "in dimension %d.", dim);
            goto fail;
        }
    }
    if (spec & __Pyx_MEMVIEW_PTR) {
        if (unlikely(!buf->suboffsets || (buf->suboffsets[dim] < 0))) {
            PyErr_Format(PyExc_ValueError,
                         "Buffer is not indirectly accessible "
                         "in dimension %d.", dim);
            goto fail;
        }
    }
    return 1;
fail:
    return 0;
}
static int
__pyx_verify_contig(Py_buffer *buf, int ndim, int c_or_f_flag)
{
    int i;
    if (c_or_f_flag & __Pyx_IS_F_CONTIG) {
        Py_ssize_t stride = 1;
        for (i = 0; i < ndim; i++) {
            if (unlikely(stride * buf->itemsize != buf->strides[i]  &&  buf->shape[i] > 1)) {
                PyErr_SetString(PyExc_ValueError,
                    "Buffer not fortran contiguous.");
                goto fail;
            }
            stride = stride * buf->shape[i];
        }
    } else if (c_or_f_flag & __Pyx_IS_C_CONTIG) {
        Py_ssize_t stride = 1;
        for (i = ndim - 1; i >- 1; i--) {
            if (unlikely(stride * buf->itemsize != buf->strides[i]  &&  buf->shape[i] > 1)) {
                PyErr_SetString(PyExc_ValueError,
                    "Buffer not C contiguous.");
                goto fail;
            }
            stride = stride * buf->shape[i];
        }
    }
    return 1;
fail:
    return 0;
}
static int __Pyx_ValidateAndInit_memviewslice(
                int *axes_specs,
                int c_or_f_flag,
                int buf_flags,
                int ndim,
                __Pyx_TypeInfo *dtype,
                __Pyx_BufFmt_StackElem stack[],
                __Pyx_memviewslice *memviewslice,
                PyObject *original_obj)
{
    struct __pyx_memoryview_obj *memview, *new_memview;
    __Pyx_RefNannyDeclarations
    Py_buffer *buf;
    int i, spec = 0, retval = -1;
    __Pyx_BufFmt_Context ctx;
    int from_memoryview = __pyx_memoryview_check(original_obj);
    __Pyx_RefNannySetupContext("ValidateAndInit_memviewslice", 0);
    if (from_memoryview && __pyx_typeinfo_cmp(dtype, ((struct __pyx_memoryview_obj *)
                                                            original_obj)->typeinfo)) {
        memview = (struct __pyx_memoryview_obj *) original_obj;
        new_memview = NULL;
    } else {
        memview = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
                                            original_obj, buf_flags, 0, dtype);
        new_memview = memview;
        if (unlikely(!memview))
            goto fail;
    }
    buf = &memview->view;
    if (unlikely(buf->ndim != ndim)) {
        PyErr_Format(PyExc_ValueError,
                "Buffer has wrong number of dimensions (expected %d, got %d)",
                ndim, buf->ndim);
        goto fail;
    }
    if (new_memview) {
        __Pyx_BufFmt_Init(&ctx, stack, dtype);
        if (unlikely(!__Pyx_BufFmt_CheckString(&ctx, buf->format))) goto fail;
    }
    if (unlikely((unsigned) buf->itemsize != dtype->size)) {
        PyErr_Format(PyExc_ValueError,
                     "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "u byte%s) "
                     "does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "u byte%s)",
                     buf->itemsize,
                     (buf->itemsize > 1) ? "s" : "",
                     dtype->name,
                     dtype->size,
                     (dtype->size > 1) ? "s" : "");
        goto fail;
    }
    if (buf->len > 0) {
        for (i = 0; i < ndim; i++) {
            spec = axes_specs[i];
            if (unlikely(!__pyx_check_strides(buf, i, ndim, spec)))
                goto fail;
            if (unlikely(!__pyx_check_suboffsets(buf, i, ndim, spec)))
                goto fail;
        }
        if (unlikely(buf->strides && !__pyx_verify_contig(buf, ndim, c_or_f_flag)))
            goto fail;
    }
    if (unlikely(__Pyx_init_memviewslice(memview, ndim, memviewslice,
                                         new_memview != NULL) == -1)) {
        goto fail;
    }
    retval = 0;
    goto no_fail;
fail:
    Py_XDECREF(new_memview);
    retval = -1;
no_fail:
    __Pyx_RefNannyFinishContext();
    return retval;
}

/* ObjectToMemviewSlice */
  static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_unsigned_char__const__(PyObject *obj, int writable_flag) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0,
                                                 PyBUF_RECORDS_RO | writable_flag, 1,
                                                 &__Pyx_TypeInfo_unsigned_char__const__, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

/* MemviewDtypeToObject */
  static CYTHON_INLINE PyObject *__pyx_memview_get_unsigned_char__const__(const char *itemp) {
    return (PyObject *) __Pyx_PyInt_From_unsigned_char(*(unsigned char const  *) itemp);
}

/* ObjectToMemviewSlice */
  static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_unsigned_long(PyObject *obj, int writable_flag) {
    __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } };
    __Pyx_BufFmt_StackElem stack[1];
    int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) };
    int retcode;
    if (obj == Py_None) {
        result.memview = (struct __pyx_memoryview_obj *) Py_None;
        return result;
    }
    retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0,
                                                 PyBUF_RECORDS_RO | writable_flag, 1,
                                                 &__Pyx_TypeInfo_unsigned_long, stack,
                                                 &result, obj);
    if (unlikely(retcode == -1))
        goto __pyx_fail;
    return result;
__pyx_fail:
    result.memview = NULL;
    result.data = NULL;
    return result;
}

/* MemviewDtypeToObject */
  static CYTHON_INLINE PyObject *__pyx_memview_get_unsigned_long(const char *itemp) {
    return (PyObject *) __Pyx_PyInt_From_unsigned_long(*(unsigned long *) itemp);
}
static CYTHON_INLINE int __pyx_memview_set_unsigned_long(const char *itemp, PyObject *obj) {
    unsigned long value = __Pyx_PyInt_As_unsigned_long(obj);
    if ((value == (unsigned long)-1) && PyErr_Occurred())
        return 0;
    *(unsigned long *) itemp = value;
    return 1;
}

/* Declarations */
  #if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      return ::std::complex< float >(x, y);
    }
  #else
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      return x + y*(__pyx_t_float_complex)_Complex_I;
    }
  #endif
#else
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
      __pyx_t_float_complex z;
      z.real = x;
      z.imag = y;
      return z;
    }
#endif

/* Arithmetic */
  #if CYTHON_CCOMPLEX
#else
    static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
       return (a.real == b.real) && (a.imag == b.imag);
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real + b.real;
        z.imag = a.imag + b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real - b.real;
        z.imag = a.imag - b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        __pyx_t_float_complex z;
        z.real = a.real * b.real - a.imag * b.imag;
        z.imag = a.real * b.imag + a.imag * b.real;
        return z;
    }
    #if 1
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        if (b.imag == 0) {
            return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else if (fabsf(b.real) >= fabsf(b.imag)) {
            if (b.real == 0 && b.imag == 0) {
                return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
            } else {
                float r = b.imag / b.real;
                float s = (float)(1.0) / (b.real + b.imag * r);
                return __pyx_t_float_complex_from_parts(
                    (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
            }
        } else {
            float r = b.real / b.imag;
            float s = (float)(1.0) / (b.imag + b.real * r);
            return __pyx_t_float_complex_from_parts(
                (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
        }
    }
    #else
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
        if (b.imag == 0) {
            return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else {
            float denom = b.real * b.real + b.imag * b.imag;
            return __pyx_t_float_complex_from_parts(
                (a.real * b.real + a.imag * b.imag) / denom,
                (a.imag * b.real - a.real * b.imag) / denom);
        }
    }
    #endif
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
        __pyx_t_float_complex z;
        z.real = -a.real;
        z.imag = -a.imag;
        return z;
    }
    static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
       return (a.real == 0) && (a.imag == 0);
    }
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
        __pyx_t_float_complex z;
        z.real =  a.real;
        z.imag = -a.imag;
        return z;
    }
    #if 1
        static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
          #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
            return sqrtf(z.real*z.real + z.imag*z.imag);
          #else
            return hypotf(z.real, z.imag);
          #endif
        }
        static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
            __pyx_t_float_complex z;
            float r, lnr, theta, z_r, z_theta;
            if (b.imag == 0 && b.real == (int)b.real) {
                if (b.real < 0) {
                    float denom = a.real * a.real + a.imag * a.imag;
                    a.real = a.real / denom;
                    a.imag = -a.imag / denom;
                    b.real = -b.real;
                }
                switch ((int)b.real) {
                    case 0:
                        z.real = 1;
                        z.imag = 0;
                        return z;
                    case 1:
                        return a;
                    case 2:
                        return __Pyx_c_prod_float(a, a);
                    case 3:
                        z = __Pyx_c_prod_float(a, a);
                        return __Pyx_c_prod_float(z, a);
                    case 4:
                        z = __Pyx_c_prod_float(a, a);
                        return __Pyx_c_prod_float(z, z);
                }
            }
            if (a.imag == 0) {
                if (a.real == 0) {
                    return a;
                } else if ((b.imag == 0) && (a.real >= 0)) {
                    z.real = powf(a.real, b.real);
                    z.imag = 0;
                    return z;
                } else if (a.real > 0) {
                    r = a.real;
                    theta = 0;
                } else {
                    r = -a.real;
                    theta = atan2f(0.0, -1.0);
                }
            } else {
                r = __Pyx_c_abs_float(a);
                theta = atan2f(a.imag, a.real);
            }
            lnr = logf(r);
            z_r = expf(lnr * b.real - theta * b.imag);
            z_theta = theta * b.real + lnr * b.imag;
            z.real = z_r * cosf(z_theta);
            z.imag = z_r * sinf(z_theta);
            return z;
        }
    #endif
#endif

/* Declarations */
  #if CYTHON_CCOMPLEX
  #ifdef __cplusplus
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      return ::std::complex< double >(x, y);
    }
  #else
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      return x + y*(__pyx_t_double_complex)_Complex_I;
    }
  #endif
#else
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
      __pyx_t_double_complex z;
      z.real = x;
      z.imag = y;
      return z;
    }
#endif

/* Arithmetic */
  #if CYTHON_CCOMPLEX
#else
    static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
       return (a.real == b.real) && (a.imag == b.imag);
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real + b.real;
        z.imag = a.imag + b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real - b.real;
        z.imag = a.imag - b.imag;
        return z;
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        __pyx_t_double_complex z;
        z.real = a.real * b.real - a.imag * b.imag;
        z.imag = a.real * b.imag + a.imag * b.real;
        return z;
    }
    #if 1
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        if (b.imag == 0) {
            return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else if (fabs(b.real) >= fabs(b.imag)) {
            if (b.real == 0 && b.imag == 0) {
                return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
            } else {
                double r = b.imag / b.real;
                double s = (double)(1.0) / (b.real + b.imag * r);
                return __pyx_t_double_complex_from_parts(
                    (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
            }
        } else {
            double r = b.real / b.imag;
            double s = (double)(1.0) / (b.imag + b.real * r);
            return __pyx_t_double_complex_from_parts(
                (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
        }
    }
    #else
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
        if (b.imag == 0) {
            return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
        } else {
            double denom = b.real * b.real + b.imag * b.imag;
            return __pyx_t_double_complex_from_parts(
                (a.real * b.real + a.imag * b.imag) / denom,
                (a.imag * b.real - a.real * b.imag) / denom);
        }
    }
    #endif
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
        __pyx_t_double_complex z;
        z.real = -a.real;
        z.imag = -a.imag;
        return z;
    }
    static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
       return (a.real == 0) && (a.imag == 0);
    }
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
        __pyx_t_double_complex z;
        z.real =  a.real;
        z.imag = -a.imag;
        return z;
    }
    #if 1
        static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
          #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
            return sqrt(z.real*z.real + z.imag*z.imag);
          #else
            return hypot(z.real, z.imag);
          #endif
        }
        static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
            __pyx_t_double_complex z;
            double r, lnr, theta, z_r, z_theta;
            if (b.imag == 0 && b.real == (int)b.real) {
                if (b.real < 0) {
                    double denom = a.real * a.real + a.imag * a.imag;
                    a.real = a.real / denom;
                    a.imag = -a.imag / denom;
                    b.real = -b.real;
                }
                switch ((int)b.real) {
                    case 0:
                        z.real = 1;
                        z.imag = 0;
                        return z;
                    case 1:
                        return a;
                    case 2:
                        return __Pyx_c_prod_double(a, a);
                    case 3:
                        z = __Pyx_c_prod_double(a, a);
                        return __Pyx_c_prod_double(z, a);
                    case 4:
                        z = __Pyx_c_prod_double(a, a);
                        return __Pyx_c_prod_double(z, z);
                }
            }
            if (a.imag == 0) {
                if (a.real == 0) {
                    return a;
                } else if ((b.imag == 0) && (a.real >= 0)) {
                    z.real = pow(a.real, b.real);
                    z.imag = 0;
                    return z;
                } else if (a.real > 0) {
                    r = a.real;
                    theta = 0;
                } else {
                    r = -a.real;
                    theta = atan2(0.0, -1.0);
                }
            } else {
                r = __Pyx_c_abs_double(a);
                theta = atan2(a.imag, a.real);
            }
            lnr = log(r);
            z_r = exp(lnr * b.real - theta * b.imag);
            z_theta = theta * b.real + lnr * b.imag;
            z.real = z_r * cos(z_theta);
            z.imag = z_r * sin(z_theta);
            return z;
        }
    #endif
#endif

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int neg_one = (int) -1, const_zero = (int) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(int) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(int) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(int) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(int),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int neg_one = (int) -1, const_zero = (int) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(int) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (int) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case  1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
                            return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
                            return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
                            return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (int) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(int) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(int,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(int) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            int val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (int) -1;
        }
    } else {
        int val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (int) -1;
        val = __Pyx_PyInt_As_int(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to int");
    return (int) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to int");
    return (int) -1;
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint16_t(uint16_t value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const uint16_t neg_one = (uint16_t) -1, const_zero = (uint16_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(uint16_t) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(uint16_t) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(uint16_t) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(uint16_t) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(uint16_t) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(uint16_t),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE uint16_t __Pyx_PyInt_As_uint16_t(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const uint16_t neg_one = (uint16_t) -1, const_zero = (uint16_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(uint16_t) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(uint16_t, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (uint16_t) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (uint16_t) 0;
                case  1: __PYX_VERIFY_RETURN_INT(uint16_t, digit, digits[0])
                case 2:
                    if (8 * sizeof(uint16_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) >= 2 * PyLong_SHIFT) {
                            return (uint16_t) (((((uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(uint16_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) >= 3 * PyLong_SHIFT) {
                            return (uint16_t) (((((((uint16_t)digits[2]) << PyLong_SHIFT) | (uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(uint16_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) >= 4 * PyLong_SHIFT) {
                            return (uint16_t) (((((((((uint16_t)digits[3]) << PyLong_SHIFT) | (uint16_t)digits[2]) << PyLong_SHIFT) | (uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (uint16_t) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(uint16_t) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint16_t, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(uint16_t) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint16_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (uint16_t) 0;
                case -1: __PYX_VERIFY_RETURN_INT(uint16_t, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(uint16_t,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(uint16_t) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) - 1 > 2 * PyLong_SHIFT) {
                            return (uint16_t) (((uint16_t)-1)*(((((uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(uint16_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) - 1 > 2 * PyLong_SHIFT) {
                            return (uint16_t) ((((((uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(uint16_t) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) - 1 > 3 * PyLong_SHIFT) {
                            return (uint16_t) (((uint16_t)-1)*(((((((uint16_t)digits[2]) << PyLong_SHIFT) | (uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(uint16_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) - 1 > 3 * PyLong_SHIFT) {
                            return (uint16_t) ((((((((uint16_t)digits[2]) << PyLong_SHIFT) | (uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(uint16_t) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) - 1 > 4 * PyLong_SHIFT) {
                            return (uint16_t) (((uint16_t)-1)*(((((((((uint16_t)digits[3]) << PyLong_SHIFT) | (uint16_t)digits[2]) << PyLong_SHIFT) | (uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(uint16_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint16_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint16_t) - 1 > 4 * PyLong_SHIFT) {
                            return (uint16_t) ((((((((((uint16_t)digits[3]) << PyLong_SHIFT) | (uint16_t)digits[2]) << PyLong_SHIFT) | (uint16_t)digits[1]) << PyLong_SHIFT) | (uint16_t)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(uint16_t) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint16_t, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(uint16_t) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint16_t, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            uint16_t val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (uint16_t) -1;
        }
    } else {
        uint16_t val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (uint16_t) -1;
        val = __Pyx_PyInt_As_uint16_t(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to uint16_t");
    return (uint16_t) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to uint16_t");
    return (uint16_t) -1;
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(int32_t) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(int32_t) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(int32_t) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int32_t) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(int32_t),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(int32_t) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(int32_t, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (int32_t) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int32_t) 0;
                case  1: __PYX_VERIFY_RETURN_INT(int32_t, digit, digits[0])
                case 2:
                    if (8 * sizeof(int32_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) >= 2 * PyLong_SHIFT) {
                            return (int32_t) (((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int32_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) >= 3 * PyLong_SHIFT) {
                            return (int32_t) (((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int32_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) >= 4 * PyLong_SHIFT) {
                            return (int32_t) (((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (int32_t) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(int32_t) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int32_t) 0;
                case -1: __PYX_VERIFY_RETURN_INT(int32_t, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(int32_t,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(int32_t) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT) {
                            return (int32_t) (((int32_t)-1)*(((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(int32_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT) {
                            return (int32_t) ((((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT) {
                            return (int32_t) (((int32_t)-1)*(((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int32_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT) {
                            return (int32_t) ((((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT) {
                            return (int32_t) (((int32_t)-1)*(((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int32_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT) {
                            return (int32_t) ((((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(int32_t) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int32_t, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int32_t) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int32_t, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            int32_t val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (int32_t) -1;
        }
    } else {
        int32_t val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (int32_t) -1;
        val = __Pyx_PyInt_As_int32_t(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to int32_t");
    return (int32_t) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to int32_t");
    return (int32_t) -1;
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint32_t(uint32_t value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const uint32_t neg_one = (uint32_t) -1, const_zero = (uint32_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(uint32_t) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(uint32_t) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(uint32_t) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(uint32_t) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(uint32_t) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(uint32_t),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE uint32_t __Pyx_PyInt_As_uint32_t(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const uint32_t neg_one = (uint32_t) -1, const_zero = (uint32_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(uint32_t) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(uint32_t, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (uint32_t) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (uint32_t) 0;
                case  1: __PYX_VERIFY_RETURN_INT(uint32_t, digit, digits[0])
                case 2:
                    if (8 * sizeof(uint32_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) >= 2 * PyLong_SHIFT) {
                            return (uint32_t) (((((uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(uint32_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) >= 3 * PyLong_SHIFT) {
                            return (uint32_t) (((((((uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(uint32_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) >= 4 * PyLong_SHIFT) {
                            return (uint32_t) (((((((((uint32_t)digits[3]) << PyLong_SHIFT) | (uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (uint32_t) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(uint32_t) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint32_t, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(uint32_t) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint32_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (uint32_t) 0;
                case -1: __PYX_VERIFY_RETURN_INT(uint32_t, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(uint32_t,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(uint32_t) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) - 1 > 2 * PyLong_SHIFT) {
                            return (uint32_t) (((uint32_t)-1)*(((((uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(uint32_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) - 1 > 2 * PyLong_SHIFT) {
                            return (uint32_t) ((((((uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(uint32_t) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) - 1 > 3 * PyLong_SHIFT) {
                            return (uint32_t) (((uint32_t)-1)*(((((((uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(uint32_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) - 1 > 3 * PyLong_SHIFT) {
                            return (uint32_t) ((((((((uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(uint32_t) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) - 1 > 4 * PyLong_SHIFT) {
                            return (uint32_t) (((uint32_t)-1)*(((((((((uint32_t)digits[3]) << PyLong_SHIFT) | (uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(uint32_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint32_t) - 1 > 4 * PyLong_SHIFT) {
                            return (uint32_t) ((((((((((uint32_t)digits[3]) << PyLong_SHIFT) | (uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(uint32_t) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint32_t, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(uint32_t) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint32_t, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            uint32_t val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (uint32_t) -1;
        }
    } else {
        uint32_t val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (uint32_t) -1;
        val = __Pyx_PyInt_As_uint32_t(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to uint32_t");
    return (uint32_t) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to uint32_t");
    return (uint32_t) -1;
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint64_t(uint64_t value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const uint64_t neg_one = (uint64_t) -1, const_zero = (uint64_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(uint64_t) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(uint64_t) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(uint64_t) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(uint64_t) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(uint64_t) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(uint64_t),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE uint64_t __Pyx_PyInt_As_uint64_t(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const uint64_t neg_one = (uint64_t) -1, const_zero = (uint64_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(uint64_t) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(uint64_t, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (uint64_t) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (uint64_t) 0;
                case  1: __PYX_VERIFY_RETURN_INT(uint64_t, digit, digits[0])
                case 2:
                    if (8 * sizeof(uint64_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) >= 2 * PyLong_SHIFT) {
                            return (uint64_t) (((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(uint64_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) >= 3 * PyLong_SHIFT) {
                            return (uint64_t) (((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(uint64_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) >= 4 * PyLong_SHIFT) {
                            return (uint64_t) (((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (uint64_t) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(uint64_t) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint64_t, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(uint64_t) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint64_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (uint64_t) 0;
                case -1: __PYX_VERIFY_RETURN_INT(uint64_t, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(uint64_t,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(uint64_t) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT) {
                            return (uint64_t) (((uint64_t)-1)*(((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(uint64_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT) {
                            return (uint64_t) ((((((uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(uint64_t) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT) {
                            return (uint64_t) (((uint64_t)-1)*(((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(uint64_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT) {
                            return (uint64_t) ((((((((uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(uint64_t) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) - 1 > 4 * PyLong_SHIFT) {
                            return (uint64_t) (((uint64_t)-1)*(((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(uint64_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(uint64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(uint64_t) - 1 > 4 * PyLong_SHIFT) {
                            return (uint64_t) ((((((((((uint64_t)digits[3]) << PyLong_SHIFT) | (uint64_t)digits[2]) << PyLong_SHIFT) | (uint64_t)digits[1]) << PyLong_SHIFT) | (uint64_t)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(uint64_t) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint64_t, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(uint64_t) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(uint64_t, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            uint64_t val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (uint64_t) -1;
        }
    } else {
        uint64_t val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (uint64_t) -1;
        val = __Pyx_PyInt_As_uint64_t(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to uint64_t");
    return (uint64_t) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to uint64_t");
    return (uint64_t) -1;
}

/* MemviewSliceCopyTemplate */
  static __Pyx_memviewslice
__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
                                 const char *mode, int ndim,
                                 size_t sizeof_dtype, int contig_flag,
                                 int dtype_is_object)
{
    __Pyx_RefNannyDeclarations
    int i;
    __Pyx_memviewslice new_mvs = { 0, 0, { 0 }, { 0 }, { 0 } };
    struct __pyx_memoryview_obj *from_memview = from_mvs->memview;
    Py_buffer *buf = &from_memview->view;
    PyObject *shape_tuple = NULL;
    PyObject *temp_int = NULL;
    struct __pyx_array_obj *array_obj = NULL;
    struct __pyx_memoryview_obj *memview_obj = NULL;
    __Pyx_RefNannySetupContext("__pyx_memoryview_copy_new_contig", 0);
    for (i = 0; i < ndim; i++) {
        if (unlikely(from_mvs->suboffsets[i] >= 0)) {
            PyErr_Format(PyExc_ValueError, "Cannot copy memoryview slice with "
                                           "indirect dimensions (axis %d)", i);
            goto fail;
        }
    }
    shape_tuple = PyTuple_New(ndim);
    if (unlikely(!shape_tuple)) {
        goto fail;
    }
    __Pyx_GOTREF(shape_tuple);
    for(i = 0; i < ndim; i++) {
        temp_int = PyInt_FromSsize_t(from_mvs->shape[i]);
        if(unlikely(!temp_int)) {
            goto fail;
        } else {
            PyTuple_SET_ITEM(shape_tuple, i, temp_int);
            temp_int = NULL;
        }
    }
    array_obj = __pyx_array_new(shape_tuple, sizeof_dtype, buf->format, (char *) mode, NULL);
    if (unlikely(!array_obj)) {
        goto fail;
    }
    __Pyx_GOTREF(array_obj);
    memview_obj = (struct __pyx_memoryview_obj *) __pyx_memoryview_new(
                                    (PyObject *) array_obj, contig_flag,
                                    dtype_is_object,
                                    from_mvs->memview->typeinfo);
    if (unlikely(!memview_obj))
        goto fail;
    if (unlikely(__Pyx_init_memviewslice(memview_obj, ndim, &new_mvs, 1) < 0))
        goto fail;
    if (unlikely(__pyx_memoryview_copy_contents(*from_mvs, new_mvs, ndim, ndim,
                                                dtype_is_object) < 0))
        goto fail;
    goto no_fail;
fail:
    __Pyx_XDECREF(new_mvs.memview);
    new_mvs.memview = NULL;
    new_mvs.data = NULL;
no_fail:
    __Pyx_XDECREF(shape_tuple);
    __Pyx_XDECREF(temp_int);
    __Pyx_XDECREF(array_obj);
    __Pyx_RefNannyFinishContext();
    return new_mvs;
}

/* CIntFromPy */
  static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const long neg_one = (long) -1, const_zero = (long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(long) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (long) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case  1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
                            return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
                            return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
                            return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (long) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(long) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(long,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(long) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            long val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (long) -1;
        }
    } else {
        long val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (long) -1;
        val = __Pyx_PyInt_As_long(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to long");
    return (long) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to long");
    return (long) -1;
}

/* CIntFromPy */
  static CYTHON_INLINE size_t __Pyx_PyInt_As_size_t(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const size_t neg_one = (size_t) -1, const_zero = (size_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(size_t) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(size_t, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (size_t) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (size_t) 0;
                case  1: __PYX_VERIFY_RETURN_INT(size_t, digit, digits[0])
                case 2:
                    if (8 * sizeof(size_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) >= 2 * PyLong_SHIFT) {
                            return (size_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(size_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) >= 3 * PyLong_SHIFT) {
                            return (size_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(size_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) >= 4 * PyLong_SHIFT) {
                            return (size_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (size_t) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(size_t) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(size_t, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(size_t) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(size_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (size_t) 0;
                case -1: __PYX_VERIFY_RETURN_INT(size_t, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(size_t,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(size_t) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) - 1 > 2 * PyLong_SHIFT) {
                            return (size_t) (((size_t)-1)*(((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(size_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) - 1 > 2 * PyLong_SHIFT) {
                            return (size_t) ((((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(size_t) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) - 1 > 3 * PyLong_SHIFT) {
                            return (size_t) (((size_t)-1)*(((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(size_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) - 1 > 3 * PyLong_SHIFT) {
                            return (size_t) ((((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(size_t) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) - 1 > 4 * PyLong_SHIFT) {
                            return (size_t) (((size_t)-1)*(((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(size_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(size_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(size_t) - 1 > 4 * PyLong_SHIFT) {
                            return (size_t) ((((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(size_t) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(size_t, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(size_t) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(size_t, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            size_t val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (size_t) -1;
        }
    } else {
        size_t val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (size_t) -1;
        val = __Pyx_PyInt_As_size_t(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to size_t");
    return (size_t) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to size_t");
    return (size_t) -1;
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const long neg_one = (long) -1, const_zero = (long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(long) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(long) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(long) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(long),
                                     little, !is_unsigned);
    }
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From___pyx_t_5dysgu_5graph_ReadEnum_t(__pyx_t_5dysgu_5graph_ReadEnum_t value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const __pyx_t_5dysgu_5graph_ReadEnum_t neg_one = (__pyx_t_5dysgu_5graph_ReadEnum_t) -1, const_zero = (__pyx_t_5dysgu_5graph_ReadEnum_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t),
                                     little, !is_unsigned);
    }
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_char(unsigned char value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const unsigned char neg_one = (unsigned char) -1, const_zero = (unsigned char) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(unsigned char) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(unsigned char) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(unsigned char) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(unsigned char) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(unsigned char) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(unsigned char),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE __pyx_t_5dysgu_5graph_ReadEnum_t __Pyx_PyInt_As___pyx_t_5dysgu_5graph_ReadEnum_t(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const __pyx_t_5dysgu_5graph_ReadEnum_t neg_one = (__pyx_t_5dysgu_5graph_ReadEnum_t) -1, const_zero = (__pyx_t_5dysgu_5graph_ReadEnum_t) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (__pyx_t_5dysgu_5graph_ReadEnum_t) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (__pyx_t_5dysgu_5graph_ReadEnum_t) 0;
                case  1: __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, digit, digits[0])
                case 2:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) >= 2 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) (((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) >= 3 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) (((((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[2]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) >= 4 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) (((((((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[3]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[2]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (__pyx_t_5dysgu_5graph_ReadEnum_t) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (__pyx_t_5dysgu_5graph_ReadEnum_t) 0;
                case -1: __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 2 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) (((__pyx_t_5dysgu_5graph_ReadEnum_t)-1)*(((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 2 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) ((((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 3 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) (((__pyx_t_5dysgu_5graph_ReadEnum_t)-1)*(((((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[2]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 3 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) ((((((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[2]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 4 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) (((__pyx_t_5dysgu_5graph_ReadEnum_t)-1)*(((((((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[3]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[2]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(__pyx_t_5dysgu_5graph_ReadEnum_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) - 1 > 4 * PyLong_SHIFT) {
                            return (__pyx_t_5dysgu_5graph_ReadEnum_t) ((((((((((__pyx_t_5dysgu_5graph_ReadEnum_t)digits[3]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[2]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[1]) << PyLong_SHIFT) | (__pyx_t_5dysgu_5graph_ReadEnum_t)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(__pyx_t_5dysgu_5graph_ReadEnum_t, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(__pyx_t_5dysgu_5graph_ReadEnum_t) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(__pyx_t_5dysgu_5graph_ReadEnum_t, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            __pyx_t_5dysgu_5graph_ReadEnum_t val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (__pyx_t_5dysgu_5graph_ReadEnum_t) -1;
        }
    } else {
        __pyx_t_5dysgu_5graph_ReadEnum_t val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (__pyx_t_5dysgu_5graph_ReadEnum_t) -1;
        val = __Pyx_PyInt_As___pyx_t_5dysgu_5graph_ReadEnum_t(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to __pyx_t_5dysgu_5graph_ReadEnum_t");
    return (__pyx_t_5dysgu_5graph_ReadEnum_t) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to __pyx_t_5dysgu_5graph_ReadEnum_t");
    return (__pyx_t_5dysgu_5graph_ReadEnum_t) -1;
}

/* CIntToPy */
  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_unsigned_long(unsigned long value) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const unsigned long neg_one = (unsigned long) -1, const_zero = (unsigned long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(unsigned long) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(unsigned long) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(unsigned long) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(unsigned long) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(unsigned long) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(unsigned long),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
  static CYTHON_INLINE unsigned long __Pyx_PyInt_As_unsigned_long(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const unsigned long neg_one = (unsigned long) -1, const_zero = (unsigned long) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(unsigned long) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(unsigned long, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (unsigned long) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (unsigned long) 0;
                case  1: __PYX_VERIFY_RETURN_INT(unsigned long, digit, digits[0])
                case 2:
                    if (8 * sizeof(unsigned long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) >= 2 * PyLong_SHIFT) {
                            return (unsigned long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) >= 3 * PyLong_SHIFT) {
                            return (unsigned long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) >= 4 * PyLong_SHIFT) {
                            return (unsigned long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (unsigned long) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(unsigned long) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(unsigned long, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(unsigned long) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(unsigned long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (unsigned long) 0;
                case -1: __PYX_VERIFY_RETURN_INT(unsigned long, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(unsigned long,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(unsigned long) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) - 1 > 2 * PyLong_SHIFT) {
                            return (unsigned long) (((unsigned long)-1)*(((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(unsigned long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) - 1 > 2 * PyLong_SHIFT) {
                            return (unsigned long) ((((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(unsigned long) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) - 1 > 3 * PyLong_SHIFT) {
                            return (unsigned long) (((unsigned long)-1)*(((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) - 1 > 3 * PyLong_SHIFT) {
                            return (unsigned long) ((((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(unsigned long) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) - 1 > 4 * PyLong_SHIFT) {
                            return (unsigned long) (((unsigned long)-1)*(((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(unsigned long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(unsigned long) - 1 > 4 * PyLong_SHIFT) {
                            return (unsigned long) ((((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(unsigned long) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(unsigned long, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(unsigned long) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(unsigned long, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            unsigned long val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (unsigned long) -1;
        }
    } else {
        unsigned long val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (unsigned long) -1;
        val = __Pyx_PyInt_As_unsigned_long(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to unsigned long");
    return (unsigned long) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to unsigned long");
    return (unsigned long) -1;
}

/* CIntFromPy */
  static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *x) {
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wconversion"
#endif
    const char neg_one = (char) -1, const_zero = (char) 0;
#ifdef __Pyx_HAS_GCC_DIAGNOSTIC
#pragma GCC diagnostic pop
#endif
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(char) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(char, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (char) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (char) 0;
                case  1: __PYX_VERIFY_RETURN_INT(char, digit, digits[0])
                case 2:
                    if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 2 * PyLong_SHIFT) {
                            return (char) (((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 3 * PyLong_SHIFT) {
                            return (char) (((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) >= 4 * PyLong_SHIFT) {
                            return (char) (((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (char) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(char) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(char) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (char) 0;
                case -1: __PYX_VERIFY_RETURN_INT(char, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(char,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(char) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(char) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                            return (char) ((((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(char) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                            return (char) ((((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
                            return (char) (((char)-1)*(((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(char) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) {
                            return (char) ((((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(char) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(char) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(char, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            char val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (char) -1;
        }
    } else {
        char val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (char) -1;
        val = __Pyx_PyInt_As_char(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to char");
    return (char) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to char");
    return (char) -1;
}

/* CheckBinaryVersion */
  static int __Pyx_check_binary_version(void) {
    char ctversion[5];
    int same=1, i, found_dot;
    const char* rt_from_call = Py_GetVersion();
    PyOS_snprintf(ctversion, 5, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
    found_dot = 0;
    for (i = 0; i < 4; i++) {
        if (!ctversion[i]) {
            same = (rt_from_call[i] < '0' || rt_from_call[i] > '9');
            break;
        }
        if (rt_from_call[i] != ctversion[i]) {
            same = 0;
            break;
        }
    }
    if (!same) {
        char rtversion[5] = {'\0'};
        char message[200];
        for (i=0; i<4; ++i) {
            if (rt_from_call[i] == '.') {
                if (found_dot) break;
                found_dot = 1;
            } else if (rt_from_call[i] < '0' || rt_from_call[i] > '9') {
                break;
            }
            rtversion[i] = rt_from_call[i];
        }
        PyOS_snprintf(message, sizeof(message),
                      "compiletime version %s of module '%.100s' "
                      "does not match runtime version %s",
                      ctversion, __Pyx_MODULE_NAME, rtversion);
        return PyErr_WarnEx(NULL, message, 1);
    }
    return 0;
}

/* FunctionImport */
  #ifndef __PYX_HAVE_RT_ImportFunction
#define __PYX_HAVE_RT_ImportFunction
static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) {
    PyObject *d = 0;
    PyObject *cobj = 0;
    union {
        void (*fp)(void);
        void *p;
    } tmp;
    d = PyObject_GetAttrString(module, (char *)"__pyx_capi__");
    if (!d)
        goto bad;
    cobj = PyDict_GetItemString(d, funcname);
    if (!cobj) {
        PyErr_Format(PyExc_ImportError,
            "%.200s does not export expected C function %.200s",
                PyModule_GetName(module), funcname);
        goto bad;
    }
#if PY_VERSION_HEX >= 0x02070000
    if (!PyCapsule_IsValid(cobj, sig)) {
        PyErr_Format(PyExc_TypeError,
            "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)",
             PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj));
        goto bad;
    }
    tmp.p = PyCapsule_GetPointer(cobj, sig);
#else
    {const char *desc, *s1, *s2;
    desc = (const char *)PyCObject_GetDesc(cobj);
    if (!desc)
        goto bad;
    s1 = desc; s2 = sig;
    while (*s1 != '\0' && *s1 == *s2) { s1++; s2++; }
    if (*s1 != *s2) {
        PyErr_Format(PyExc_TypeError,
            "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)",
             PyModule_GetName(module), funcname, sig, desc);
        goto bad;
    }
    tmp.p = PyCObject_AsVoidPtr(cobj);}
#endif
    *f = tmp.fp;
    if (!(*f))
        goto bad;
    Py_DECREF(d);
    return 0;
bad:
    Py_XDECREF(d);
    return -1;
}
#endif

/* InitStrings */
  static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
    while (t->p) {
        #if PY_MAJOR_VERSION < 3
        if (t->is_unicode) {
            *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
        } else if (t->intern) {
            *t->p = PyString_InternFromString(t->s);
        } else {
            *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
        }
        #else
        if (t->is_unicode | t->is_str) {
            if (t->intern) {
                *t->p = PyUnicode_InternFromString(t->s);
            } else if (t->encoding) {
                *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
            } else {
                *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
            }
        } else {
            *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
        }
        #endif
        if (!*t->p)
            return -1;
        if (PyObject_Hash(*t->p) == -1)
            return -1;
        ++t;
    }
    return 0;
}

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
    return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
}
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
    Py_ssize_t ignore;
    return __Pyx_PyObject_AsStringAndSize(o, &ignore);
}
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
#if !CYTHON_PEP393_ENABLED
static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    char* defenc_c;
    PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
    if (!defenc) return NULL;
    defenc_c = PyBytes_AS_STRING(defenc);
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    {
        char* end = defenc_c + PyBytes_GET_SIZE(defenc);
        char* c;
        for (c = defenc_c; c < end; c++) {
            if ((unsigned char) (*c) >= 128) {
                PyUnicode_AsASCIIString(o);
                return NULL;
            }
        }
    }
#endif
    *length = PyBytes_GET_SIZE(defenc);
    return defenc_c;
}
#else
static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    if (likely(PyUnicode_IS_ASCII(o))) {
        *length = PyUnicode_GET_LENGTH(o);
        return PyUnicode_AsUTF8(o);
    } else {
        PyUnicode_AsASCIIString(o);
        return NULL;
    }
#else
    return PyUnicode_AsUTF8AndSize(o, length);
#endif
}
#endif
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
    if (
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
            __Pyx_sys_getdefaultencoding_not_ascii &&
#endif
            PyUnicode_Check(o)) {
        return __Pyx_PyUnicode_AsStringAndSize(o, length);
    } else
#endif
#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
    if (PyByteArray_Check(o)) {
        *length = PyByteArray_GET_SIZE(o);
        return PyByteArray_AS_STRING(o);
    } else
#endif
    {
        char* result;
        int r = PyBytes_AsStringAndSize(o, &result, length);
        if (unlikely(r < 0)) {
            return NULL;
        } else {
            return result;
        }
    }
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
   int is_true = x == Py_True;
   if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
   else return PyObject_IsTrue(x);
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
    int retval;
    if (unlikely(!x)) return -1;
    retval = __Pyx_PyObject_IsTrue(x);
    Py_DECREF(x);
    return retval;
}
static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
#if PY_MAJOR_VERSION >= 3
    if (PyLong_Check(result)) {
        if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
                "__int__ returned non-int (type %.200s).  "
                "The ability to return an instance of a strict subclass of int "
                "is deprecated, and may be removed in a future version of Python.",
                Py_TYPE(result)->tp_name)) {
            Py_DECREF(result);
            return NULL;
        }
        return result;
    }
#endif
    PyErr_Format(PyExc_TypeError,
                 "__%.4s__ returned non-%.4s (type %.200s)",
                 type_name, type_name, Py_TYPE(result)->tp_name);
    Py_DECREF(result);
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
#if CYTHON_USE_TYPE_SLOTS
  PyNumberMethods *m;
#endif
  const char *name = NULL;
  PyObject *res = NULL;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_Check(x) || PyLong_Check(x)))
#else
  if (likely(PyLong_Check(x)))
#endif
    return __Pyx_NewRef(x);
#if CYTHON_USE_TYPE_SLOTS
  m = Py_TYPE(x)->tp_as_number;
  #if PY_MAJOR_VERSION < 3
  if (m && m->nb_int) {
    name = "int";
    res = m->nb_int(x);
  }
  else if (m && m->nb_long) {
    name = "long";
    res = m->nb_long(x);
  }
  #else
  if (likely(m && m->nb_int)) {
    name = "int";
    res = m->nb_int(x);
  }
  #endif
#else
  if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
    res = PyNumber_Int(x);
  }
#endif
  if (likely(res)) {
#if PY_MAJOR_VERSION < 3
    if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
#else
    if (unlikely(!PyLong_CheckExact(res))) {
#endif
        return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
    }
  }
  else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_TypeError,
                    "an integer is required");
  }
  return res;
}
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
  Py_ssize_t ival;
  PyObject *x;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_CheckExact(b))) {
    if (sizeof(Py_ssize_t) >= sizeof(long))
        return PyInt_AS_LONG(b);
    else
        return PyInt_AsSsize_t(b);
  }
#endif
  if (likely(PyLong_CheckExact(b))) {
    #if CYTHON_USE_PYLONG_INTERNALS
    const digit* digits = ((PyLongObject*)b)->ob_digit;
    const Py_ssize_t size = Py_SIZE(b);
    if (likely(__Pyx_sst_abs(size) <= 1)) {
        ival = likely(size) ? digits[0] : 0;
        if (size == -1) ival = -ival;
        return ival;
    } else {
      switch (size) {
         case 2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
      }
    }
    #endif
    return PyLong_AsSsize_t(b);
  }
  x = PyNumber_Index(b);
  if (!x) return -1;
  ival = PyInt_AsSsize_t(x);
  Py_DECREF(x);
  return ival;
}
static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) {
  if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) {
    return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o);
#if PY_MAJOR_VERSION < 3
  } else if (likely(PyInt_CheckExact(o))) {
    return PyInt_AS_LONG(o);
#endif
  } else {
    Py_ssize_t ival;
    PyObject *x;
    x = PyNumber_Index(o);
    if (!x) return -1;
    ival = PyInt_AsLong(x);
    Py_DECREF(x);
    return ival;
  }
}
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
  return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
}
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
    return PyInt_FromSize_t(ival);
}


#endif /* Py_PYTHON_H */
