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# H/part_func_up.h

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    00001 #ifndef __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
    00002 #define __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
    00003
    00004 #include "data_structures.h"
    00005
    00006 #define   RNA_UP_MODE_1   1U
    00007 #define   RNA_UP_MODE_2   2U
    00008 #define   RNA_UP_MODE_3   4U
    00009
    00051 pu_contrib *pf_unstru(char *sequence,
    00052                       int max_w);
    00053
    00096 interact *pf_interact(const char *s1,
    00097                       const char *s2,
    00098                       pu_contrib *p_c,
    00099                       pu_contrib *p_c2,
    00100                       int max_w,
    00101                       char *cstruc,
    00102                       int incr3,
    00103                       int incr5);
    00104
    00108 void free_interact(interact *pin);
    00109
    00113 int Up_plot(pu_contrib *p_c,
    00114             pu_contrib *p_c_sh,
    00115             interact *pint,
    00116             char *ofile,
    00117             int **unpaired_values,
    00118             char *select_contrib,
    00119             char *head,
    00120             unsigned int mode);
    00121
    00125 pu_contrib  *get_pu_contrib_struct( unsigned int n,
    00126                                     unsigned int w);
    00127
    00131 void        free_pu_contrib_struct(pu_contrib *pu);
    00132
    00133 #endif