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# H/subopt.h

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    00001 /* subopt.h */
    00002 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
    00003 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__
    00004
    00005 #include "data_structures.h"
    00006
    00007 #define MAXDOS 1000
    00008
    00029 SOLUTION *subopt (char *seq,
    00030                   char *sequence,
    00031                   int delta,
    00032                   FILE *fp);
    00033
    00034 SOLUTION *subopt_par( char *seq,
    00035                       char *structure,
    00036                       paramT *parameters,
    00037                       int delta,
    00038                       int is_constrained,
    00039                       int is_circular,
    00040                       FILE *fp);
    00041
    00054 SOLUTION *subopt_circ ( char *seq,
    00055                         char *sequence,
    00056                         int delta,
    00057                         FILE *fp);
    00058
    00062 extern  int     subopt_sorted;
    00063
    00064 extern  int     density_of_states[MAXDOS+1];
    00065
    00069 extern  double  print_energy;
    00070
    00071 #endif
    00072 /* End of file */