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# H/PKplex.h

    00001 #ifndef PKPLEX_H
    00002 #define PKPLEX_H
    00003
    00004 #include "data_structures.h"
    00005
    00006 extern dupVar *PlexHits;
    00007 extern int    PlexHitsArrayLength;
    00008 extern int    NumberOfHits;
    00009 extern int    verbose;
    00010
    00011
    00012 dupVar  **PKLduplexfold_XS( const char *s1,
    00013                             int **access_s1,
    00014                             const int threshold,
    00015                             const int alignment_length,
    00016                             const int delta);
    00017
    00018 int     arraySize(duplexT **array);
    00019
    00020 void    freeDuplexT(duplexT **array);
    00021
    00022 #endif