##State name
##StartPhase EndPhase Duraration Prediodic Direction BurnLength
##State start conditions 
##State end conditions
##Parameter file names
#Branch point states
branch
non-coding 0 0 fixed non-periodic forward 0 
A,2
ST3,1,7 7
#Intron 3' spacer states
spacer3
non-coding 0 0 duration non-periodic forward 0
A,3
AG,-1
ST4,2,0 ST1
#
spacer5
non-coding 0 0 duration non-periodic forward 0
GT,2
A,-5
ST5,5,0 ST2
#
donor
non-coding 0 0 fixed non-periodic forward 0
GT,1
ST_MC_DON,1,2 2
#                                                                                                                                                       
acceptor
non-coding 0 0 fixed non-periodic forward 0
AG,1 contig,0
ST_MC_ACC,1,2 2
#####