INSTALL.md
LICENSE
MANIFEST.in
README.md
ez_setup.py
setup.py
cobra/VERSION
cobra/__init__.py
cobra/version.py
cobra.egg-info/PKG-INFO
cobra.egg-info/SOURCES.txt
cobra.egg-info/dependency_links.txt
cobra.egg-info/requires.txt
cobra.egg-info/top_level.txt
cobra/core/ArrayBasedModel.py
cobra/core/DictList.py
cobra/core/Formula.py
cobra/core/Gene.py
cobra/core/Metabolite.py
cobra/core/Model.py
cobra/core/Object.py
cobra/core/Reaction.py
cobra/core/Solution.py
cobra/core/Species.py
cobra/core/__init__.py
cobra/design/__init__.py
cobra/design/design_algorithms.py
cobra/flux_analysis/__init__.py
cobra/flux_analysis/deletion_worker.py
cobra/flux_analysis/double_deletion.py
cobra/flux_analysis/essentiality.py
cobra/flux_analysis/gapfilling.py
cobra/flux_analysis/loopless.py
cobra/flux_analysis/moma.py
cobra/flux_analysis/parsimonious.py
cobra/flux_analysis/phenotype_phase_plane.py
cobra/flux_analysis/reaction.py
cobra/flux_analysis/single_deletion.py
cobra/flux_analysis/variability.py
cobra/io/__init__.py
cobra/io/json.py
cobra/io/mat.py
cobra/io/sbml.py
cobra/io/sbml3.py
cobra/manipulation/__init__.py
cobra/manipulation/annotate.py
cobra/manipulation/delete.py
cobra/manipulation/modify.py
cobra/manipulation/validate.py
cobra/solvers/__init__.py
cobra/solvers/cglpk.pyx
cobra/solvers/coin.py
cobra/solvers/cplex_solver.py
cobra/solvers/cplex_solver_java.py
cobra/solvers/esolver.py
cobra/solvers/glpk.pxd
cobra/solvers/glpk_solver.py
cobra/solvers/glpk_solver_java.py
cobra/solvers/gurobi_solver.py
cobra/solvers/gurobi_solver_java.py
cobra/solvers/mosek.py
cobra/solvers/parameters.py
cobra/solvers/wrappers.py
cobra/test/__init__.py
cobra/test/design.py
cobra/test/flux_analysis.py
cobra/test/io_tests.py
cobra/test/manipulation.py
cobra/test/solvers.py
cobra/test/unit_tests.py
cobra/test/data/iJO1366.pickle
cobra/test/data/iJO1366.xml
cobra/test/data/invalid0.xml
cobra/test/data/invalid1.xml
cobra/test/data/invalid2.xml
cobra/test/data/mini.json
cobra/test/data/mini.mat
cobra/test/data/mini.pickle
cobra/test/data/mini_cobra.xml
cobra/test/data/mini_fbc1.xml
cobra/test/data/mini_fbc2.xml
cobra/test/data/mini_fbc2.xml.bz2
cobra/test/data/mini_fbc2.xml.gz
cobra/test/data/salmonella.genes
cobra/test/data/salmonella.media
cobra/test/data/salmonella.pickle
cobra/test/data/salmonella.xml
cobra/test/data/textbook.xml.gz
cobra/test/data/textbook_fva.json
cobra/test/data/update_pickles.py
cobra/topology/__init__.py
cobra/topology/reporter_metabolites.py