# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Jan 10 13:25:57 2020
# ------------------------------------------------

package:
    name: cgat-apps
    version: 0.5.6
source:
    sha256: e728f51696f9d23bea1553b3f11474b024e13902bf6ecd13a14481966b166ae1
    url: https://pypi.io/packages/source/c/cgat/cgat-0.5.6.tar.gz
build:
    entry_points:
        - cgat = cgat.cgat:main
    number: '0'
    string: py37h448cc22_0
requirements:
    build:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - binutils_impl_linux-64 2.33.1 he1b5a44_7
        - binutils_linux-64 2.33.1 h9595d00_16
        - gcc_impl_linux-64 7.3.0 hd420e75_4
        - gcc_linux-64 7.3.0 h553295d_16
        - gxx_impl_linux-64 7.3.0 hdf63c60_4
        - gxx_linux-64 7.3.0 h553295d_16
        - ld_impl_linux-64 2.33.1 h53a641e_7
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgomp 9.2.0 h24d8f2e_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - bcftools 1.9 h68d8f2e_9
        - bzip2 1.0.8 h516909a_2
        - ca-certificates 2019.11.28 hecc5488_0
        - certifi 2019.11.28 py37_0
        - coreutils 8.31 h14c3975_0
        - curl 7.65.3 hf8cf82a_0
        - cython 0.29.14 py37he1b5a44_0
        - gsl 2.5 h294904e_1
        - htslib 1.9 h244ad75_9
        - krb5 1.16.4 h2fd8d38_0
        - ld_impl_linux-64 2.33.1 h53a641e_7
        - libblas 3.8.0 14_openblas
        - libcblas 3.8.0 14_openblas
        - libcurl 7.65.3 hda55be3_0
        - libdeflate 1.3 h516909a_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgfortran-ng 7.3.0 hdf63c60_4
        - libgomp 9.2.0 h24d8f2e_2
        - liblapack 3.8.0 14_openblas
        - libopenblas 0.3.7 h5ec1e0e_6
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - ncurses 6.1 hf484d3e_1002
        - numpy 1.14.6 py37h95a1406_1201
        - openssl 1.1.1d h516909a_0
        - perl 5.26.2 h516909a_1006
        - pip 19.3.1 py37_0
        - pysam 0.15.2 py37hea69257_4
        - python 3.7.6 h357f687_2
        - readline 8.0 hf8c457e_0
        - samtools 1.9 h10a08f8_12
        - setuptools 44.0.0 py37_0
        - sqlite 3.30.1 hcee41ef_0
        - tk 8.6.10 hed695b0_0
        - wheel 0.33.6 py37_0
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
    run:
        - alignlib-lite
        - bedtools
        - biopython
        - cgatcore
        - coreutils
        - future
        - grep
        - libgcc-ng >=7.3.0
        - libpng >=1.6.37,<1.7.0a0
        - libpng >=1.6.37,<1.7.0a0
        - libstdcxx-ng >=7.3.0
        - matplotlib
        - numpy >=1.14.6,<2.0a0
        - pandas
        - pybedtools
        - pybigwig
        - pysam<=0.15.2
        - python >=3.7,<3.8.0a0
        - python-lzo
        - pyyaml
        - quicksect
        - scipy
        - six
        - sortedcontainers
        - ucsc-bedgraphtobigwig
        - ucsc-bedtobigbed
        - ucsc-wigtobigwig
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - cgat --help
        - cgat --help Conversion
        - cgat gtf2table -h
        - find ${PREFIX} -iname "*bamtools.cpython-*-x86_64-linux-gnu.so*" -exec ldd
            {} \;
        - cgat bam2bed -h
    imports:
        - cgat
about:
    home: https://www.cgat.org/downloads/public/cgat/documentation
    license: MIT
    license_file: LICENSE
    summary: Computational Genomics Analysis Toolkit
extra:
    copy_test_source_files: true
    final: true
