## Site Map

- Home
- Manual
- FAQ

## Getting Help

Please submit an issue on GitHub, or send an E-Mail to centrifuge.metagenomics@gmail.com for private communications.

## Releases

Newest release (Github)

version 1.0.3-beta (old) | 12/06/2016
Source code
Linux x86_64 binary
Mac OS X x86_64 binary

## Indexes

last updated: | 12/06/2016
Bacteria, Archaea, Viruses, Human (compressed) | 5.4 GB
Bacteria, Aarchaea, Viruses, Human | 7.9 GB

last updated: | 3/3/2018
NCBI nucleotide non-redundant sequences | 64 GB

last updated: | 4/15/2018
Bacteria, Archaea (compressed) | 6.3 GB

MD5 checksum

## Related Tools

- Pavian: Tool for interactive analysis of pathogen and metagenomics data
- HISAT2: Graph-based alignment to a population of genomes
- Bowtie2: Ultrafast read alignment

## Publications

- Kim D, Song L, Breitwieser FP, and Salzberg SL. Centrifuge: rapid and sensitive classification of metagenomic sequences. Genome Research 2016

## Contributors

- Daehwan Kim
- Li Song
- Florian Breitwieser
- Chanhee Park
- Steven Salzberg

## Links

- Center for Computational Biology at Johns Hopkins University
- Computer Science Department at Johns Hopkins University