Getting Started With CellProfiler!
CellProfiler is automated image analysis software to measure biological phenotypes in images.
See a pipeline in action
| Load an example pipeline, then click on the "Analyze Images" button.
Build your own pipeline
| 1: Start | Download a pipeline template from our website of examples. Load it with File > Import > Pipeline from File.... Run it, then modify it to suit your assay.
| 2: Adjust | Use the Input modules to select and configure your images for analysis. Add Analysis modules to identify image features, make measurements and export results.
| 3: Test | Click the "Start Test Mode" button to step through the pipeline and check the module settings on a few images.
| 4: Analyze | Click the "Analyze Images" button to process all of your images with your pipeline.

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