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hal::ColumnIterator Member List

This is the complete list of members for hal::ColumnIterator, including all inherited members.

ColumnMap typedef (defined in hal::ColumnIterator) | hal::ColumnIterator |
counted_ptr< ColumnIterator > (defined in hal::ColumnIterator) | hal::ColumnIterator | friend
counted_ptr< const ColumnIterator > (defined in hal::ColumnIterator) | hal::ColumnIterator | friend
defragment() const =0 | hal::ColumnIterator | pure virtual
DNASet typedef (defined in hal::ColumnIterator) | hal::ColumnIterator |
getArrayIndex() const =0 | hal::ColumnIterator | pure virtual
getColumnMap() const =0 | hal::ColumnIterator | pure virtual
getReferenceGenome() const =0 | hal::ColumnIterator | pure virtual
getReferenceSequence() const =0 | hal::ColumnIterator | pure virtual
getReferenceSequencePosition() const =0 | hal::ColumnIterator | pure virtual
isCanonicalOnRef() const =0 | hal::ColumnIterator | pure virtual
lastColumn() const =0 | hal::ColumnIterator | pure virtual
print(std::ostream &os) const =0 | hal::ColumnIterator | pure virtual
toRight() const =0 | hal::ColumnIterator | pure virtual
toSite(hal_index_t columnIndex, hal_index_t lastIndex, bool clearCache=false) const =0 | hal::ColumnIterator | pure virtual
~ColumnIterator()=0 (defined in hal::ColumnIterator) | hal::ColumnIterator | inline protected pure virtual