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hal.h
1 /*
2 * Copyright (C) 2012 by Glenn Hickey (hickey@soe.ucsc.edu)
3 *
4 * Released under the MIT license, see LICENSE.txt
5 */
6
7 #ifndef ___HAL_H
8 #define ___HAL_H
9
61 #include "halDefs.h"
62 #include "halCommon.h"
63 #include "halPositionCache.h"
64 #include "halAlignmentInstance.h"
65 #include "halCLParserInstance.h"
66 #include "halAlignment.h"
67 #include "halCLParser.h"
68 #include "halGenome.h"
69 #include "halBottomSegment.h"
70 #include "halBottomSegmentIterator.h"
71 #include "halMetaData.h"
72 #include "halSequence.h"
73 #include "halSequenceIterator.h"
74 #include "halDNAIterator.h"
75 #include "halSegment.h"
76 #include "halSlicedSegment.h"
77 #include "halMappedSegment.h"
78 #include "halSegmentIterator.h"
79 #include "halSegmentedSequence.h"
80 #include "halTopSegment.h"
81 #include "halTopSegmentIterator.h"
82 #include "halDNAIterator.h"
83 #include "halValidate.h"
84 #include "halColumnIterator.h"
85 #include "halGappedTopSegmentIterator.h"
86 #include "halGappedBottomSegmentIterator.h"
87 #include "halRearrangement.h"
88
89 #endif