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- chopString() : hal
- hammingDistance() : hal
- hdf5AlignmentInstance() : hal
- hdf5AlignmentInstanceReadOnly() : hal
- hdf5CLParserInstance() : hal
- isFourfoldDegenerate() : hal
- isNucleotide() : hal
- openHalAlignment() : hal
- openHalAlignmentReadOnly() : hal
- reverseComplement() : hal
- validateAlignment() : hal
- validateBottomSegment() : hal
- validateDuplications() : hal
- validateGenome() : hal
- validateSequence() : hal
- validateTopSegment() : hal