halapi hierarchichalalignmentformatapi

- Main Page
- Namespaces
- Classes
- Files

- Class List
- Class Index
- Class Hierarchy
- Class Members

hal::HDF5TopSegment Member List
This is the complete list of members for hal::HDF5TopSegment, including all inherited members.

_array (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[mutable, protected]`
_genome (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[mutable, protected]`
_index (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[mutable, protected]`
bottomIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
bottomOffsetOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
dataType() (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[static]`
genomeIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
getArrayIndex() const | hal::HDF5TopSegment | `[inline, virtual]`
getBottomParseIndex() const | hal::HDF5TopSegment | `[inline, virtual]`
getBottomParseOffset() const | hal::HDF5TopSegment | `[inline, virtual]`
getGenome() const | hal::HDF5TopSegment | `[inline, virtual]`
getGenome() | hal::HDF5TopSegment | `[inline, virtual]`
getLength() const | hal::HDF5TopSegment | `[inline, virtual]`
getNextParalogyIndex() const | hal::HDF5TopSegment | `[inline, virtual]`
getParentIndex() const | hal::HDF5TopSegment | `[inline, virtual]`
getParentReversed() const | hal::HDF5TopSegment | `[inline, virtual]`
getStartPosition() const | hal::HDF5TopSegment | `[inline, virtual]`
HDF5BottomSegmentIterator (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[friend]`
HDF5TopSegment(HDF5Genome *genome, HDF5ExternalArray *array, hal_index_t index) | hal::HDF5TopSegment |
HDF5TopSegmentIterator (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[friend]`
lengthOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
parentIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
parentReversedOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
parIndexOffset (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
setBottomParseIndex(hal_index_t botParseIdx) | hal::HDF5TopSegment | `[inline, virtual]`
setBottomParseOffset(hal_offset_t botParseOffset) | hal::HDF5TopSegment | `[inline, virtual]`
setLength(hal_size_t length) | hal::HDF5TopSegment | `[inline, virtual]`
setNextParalogyIndex(hal_index_t parIdx) | hal::HDF5TopSegment | `[inline, virtual]`
setParentIndex(hal_index_t parIdx) | hal::HDF5TopSegment | `[inline, virtual]`
setParentReversed(hal_bool_t isReversed) | hal::HDF5TopSegment | `[inline, virtual]`
setStartPosition(hal_index_t startPos) | hal::HDF5TopSegment | `[inline, virtual]`
totalSize (defined in hal::HDF5TopSegment) | hal::HDF5TopSegment | `[protected, static]`
~HDF5TopSegment() | hal::HDF5TopSegment |
~Segment()=0 | hal::Segment | `[inline, protected, pure virtual]`
~TopSegment()=0 | hal::TopSegment | `[inline, protected, pure virtual]`

All Classes Namespaces Functions Variables Friends