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hal.h
/*
* Copyright (C) 2012 by Glenn Hickey (hickey@soe.ucsc.edu)
*
* Released under the MIT license, see LICENSE.txt
*/
#ifndef ___HAL_H
#define ___HAL_H
#include "halDefs.h"
#include "halCommon.h"
#include "halPositionCache.h"
#include "halAlignmentInstance.h"
#include "halCLParserInstance.h"
#include "halAlignment.h"
#include "halCLParser.h"
#include "halGenome.h"
#include "halBottomSegment.h"
#include "halBottomSegmentIterator.h"
#include "halMetaData.h"
#include "halSequence.h"
#include "halSequenceIterator.h"
#include "halDNAIterator.h"
#include "halSegment.h"
#include "halSlicedSegment.h"
#include "halMappedSegment.h"
#include "halSegmentIterator.h"
#include "halSegmentedSequence.h"
#include "halTopSegment.h"
#include "halTopSegmentIterator.h"
#include "halDNAIterator.h"
#include "halValidate.h"
#include "halColumnIterator.h"
#include "halGappedTopSegmentIterator.h"
#include "halGappedBottomSegmentIterator.h"
#include "halRearrangement.h"
#endif