halapi hierarchichalalignmentformatapi

- Main Page
- Namespaces
- Classes
- Files

- Class List
- Class Index
- Class Hierarchy
- Class Members

hal::HDF5Sequence Member List
This is the complete list of members for hal::HDF5Sequence, including all inherited members.

_array (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[mutable, protected]`
_genome (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[mutable, protected]`
_index (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[mutable, protected]`
dataType(hal_size_t maxNameLength) (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[static]`
getArrayIndex() const | hal::HDF5Sequence | `[virtual]`
getBottomSegmentIterator(hal_index_t position) | hal::HDF5Sequence | `[virtual]`
getBottomSegmentIterator(hal_index_t position) const | hal::HDF5Sequence | `[virtual]`
getGenome() const | hal::HDF5Sequence | `[virtual]`
getGenome() | hal::HDF5Sequence | `[virtual]`
getName() const (defined in hal::HDF5Sequence) | hal::HDF5Sequence |
getNumBottomSegments() const | hal::HDF5Sequence | `[virtual]`
getNumTopSegments() const | hal::HDF5Sequence | `[virtual]`
getSequenceLength() const | hal::HDF5Sequence | `[virtual]`
getStartPosition() const | hal::HDF5Sequence | `[virtual]`
getString(std::string &outString) const | hal::HDF5Sequence | `[virtual]`
getSubString(std::string &outString, hal_size_t start, hal_size_t length) const | hal::HDF5Sequence | `[virtual]`
getTopSegmentIterator(hal_index_t position) | hal::HDF5Sequence | `[virtual]`
getTopSegmentIterator(hal_index_t position) const | hal::HDF5Sequence | `[virtual]`
HDF5Sequence(HDF5Genome *genome, HDF5ExternalArray *array, hal_index_t index) | hal::HDF5Sequence |
HDF5SequenceIterator (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[friend]`
lengthOffset (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[protected, static]`
nameOffset (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[protected, static]`
numBottomSegmentsOffset (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[protected, static]`
numTopSegmentsOffset (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[protected, static]`
set(hal_size_t startPosition, const Sequence::Info &sequenceInfo) (defined in hal::HDF5Sequence) | hal::HDF5Sequence |
setString(const std::string &inString) | hal::HDF5Sequence | `[virtual]`
setSubString(const std::string &intString, hal_size_t start, hal_size_t length) | hal::HDF5Sequence | `[virtual]`
startOffset (defined in hal::HDF5Sequence) | hal::HDF5Sequence | `[protected, static]`
~HDF5Sequence() | hal::HDF5Sequence |
~SegmentedSequence()=0 | hal::SegmentedSequence | `[inline, protected, pure virtual]`
~Sequence()=0 | hal::Sequence | `[inline, protected, pure virtual]`

All Classes Namespaces Functions Variables Friends