All Classes Namespaces Functions Pages
File List
Here is a list of all documented files with brief descriptions:

inc |
hal.h |
halAlignment.h |
halAlignmentInstance.h |
halBottomSegment.h |
halBottomSegmentIterator.h |
halCLParser.h |
halCLParserInstance.h |
halColumnIterator.h |
halCommon.h |
halDefs.h |
halDNAIterator.h |
halGappedBottomSegmentIterator.h |
halGappedSegmentIterator.h |
halGappedTopSegmentIterator.h |
halGenome.h |
halMappedSegment.h |
halMetaData.h |
halPositionCache.h |
halRearrangement.h |
halSegment.h |
halSegmentedSequence.h |
halSegmentIterator.h |
halSequence.h |
halSequenceIterator.h |
halSlicedSegment.h |
halTopSegment.h |
halTopSegmentIterator.h |
halValidate.h |