#!/opt/anaconda1anaconda2anaconda3/bin/perl

########## LICENCE ##########
# Copyright (c) 2014-2016 Genome Research Ltd.
#
# Author: Cancer Genome Project <cgpit@sanger.ac.uk>
#
# This file is part of BRASS.
#
# BRASS is free software: you can redistribute it and/or modify it under
# the terms of the GNU Affero General Public License as published by the Free
# Software Foundation; either version 3 of the License, or (at your option) any
# later version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more
# details.
#
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
# 1. The usage of a range of years within a copyright statement contained within
# this distribution should be interpreted as being equivalent to a list of years
# including the first and last year specified and all consecutive years between
# them. For example, a copyright statement that reads ‘Copyright (c) 2005, 2007-
# 2009, 2011-2012’ should be interpreted as being identical to a statement that
# reads ‘Copyright (c) 2005, 2007, 2008, 2009, 2011, 2012’ and a copyright
# statement that reads ‘Copyright (c) 2005-2012’ should be interpreted as being
# identical to a statement that reads ‘Copyright (c) 2005, 2006, 2007, 2008,
# 2009, 2010, 2011, 2012’."
########## LICENCE ##########

use strict;

my @count_of;
while(<>) {
  my ($this_chr, $mate_chr, $isize) = (split /\t/)[2,6,8];
  if(($mate_chr eq q{=} || $mate_chr eq $this_chr)
    &&
    $isize >= 0
    ) { $count_of[$isize]++; }
}

for(0..3000) {
  print "$_ $count_of[$_]\n";
}
