bin/bowtie2
bin/bowtie2-align-l
bin/bowtie2-align-s
bin/bowtie2-build
bin/bowtie2-build-l
bin/bowtie2-build-s
bin/bowtie2-inspect
bin/bowtie2-inspect-l
bin/bowtie2-inspect-s
bin/scripts/convert_quals.pl
bin/scripts/debug_wrapper.pl
bin/scripts/gen_2b_occ_lookup.pl
bin/scripts/gen_occ_lookup.pl
bin/scripts/gen_solqual_lookup.pl
bin/scripts/infer_fraglen.pl
bin/scripts/make_a_thaliana_tair.sh
bin/scripts/make_b_taurus_UMD3.sh
bin/scripts/make_c_elegans.sh
bin/scripts/make_canFam2.sh
bin/scripts/make_d_melanogaster.sh
bin/scripts/make_e_coli.sh
bin/scripts/make_h_sapiens_ncbi36.sh
bin/scripts/make_h_sapiens_ncbi37.sh
bin/scripts/make_hg18.sh
bin/scripts/make_hg19.sh
bin/scripts/make_m_musculus_ncbi37.sh
bin/scripts/make_mm10.sh
bin/scripts/make_mm9.sh
bin/scripts/make_rn4.sh
bin/scripts/make_s_cerevisiae.sh
