# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Sat May  9 12:29:05 2020
# ------------------------------------------------

package:
    name: bowtie2
    version: 2.2.4
source:
    md5: d31294875092e76ebb061eadc7998582
    url: https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.4/bowtie2-2.2.4-source.zip
build:
    number: '6'
    string: py37h99015e2_6
requirements:
    build:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - binutils_impl_linux-64 2.34 h53a641e_0
        - binutils_linux-64 2.34 hc952b39_18
        - gcc_impl_linux-64 7.3.0 hd420e75_5
        - gcc_linux-64 7.3.0 h553295d_18
        - gxx_impl_linux-64 7.3.0 hdf63c60_5
        - gxx_linux-64 7.3.0 h553295d_18
        - ld_impl_linux-64 2.34 h53a641e_0
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgomp 9.2.0 h24d8f2e_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
    host:
        - _libgcc_mutex 0.1 conda_forge
        - _openmp_mutex 4.5 0_gnu
        - ca-certificates 2020.4.5.1 hecc5488_0
        - certifi 2020.4.5.1 py37hc8dfbb8_0
        - ld_impl_linux-64 2.34 h53a641e_0
        - libffi 3.2.1 he1b5a44_1007
        - libgcc-ng 9.2.0 h24d8f2e_2
        - libgomp 9.2.0 h24d8f2e_2
        - libstdcxx-ng 9.2.0 hdf63c60_2
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1g h516909a_0
        - pip 20.1 pyh9f0ad1d_0
        - python 3.7.6 h8356626_5_cpython
        - python_abi 3.7 1_cp37m
        - readline 8.0 hf8c457e_0
        - setuptools 46.1.3 py37hc8dfbb8_0
        - sqlite 3.30.1 hcee41ef_0
        - tk 8.6.10 hed695b0_0
        - wheel 0.34.2 py_1
        - xz 5.2.5 h516909a_0
        - zlib 1.2.11 h516909a_1006
    run:
        - libgcc-ng >=7.3.0
        - libstdcxx-ng >=7.3.0
        - perl
        - python >=3.7,<3.8.0a0
        - python_abi 3.7.* *_cp37m
test:
    commands:
        - bowtie2 --version
        - bowtie2-build --help
        - bowtie2-inspect-l --help
        - bowtie2-align-s --help
        - bowtie2_wrapper.sh -h
about:
    home: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
    license: GPLv3
    summary: 'Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing
        reads to long reference sequences. It is particularly good at aligning reads
        of about 50 up to 100s or 1,000s of characters, and particularly good at aligning
        to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with
        an FM Index to keep its memory footprint small: for the human genome, its
        memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local,
        and paired-end alignment modes.   http://bowtie-bio.sourceforge.net/bowtie2/index.shtml '
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:bowtie2
        - doi:10.1038/nmeth.1923
