LICENSE.txt
MANIFEST.in
README.md
setup.cfg
setup.py
Biskit/AmberCrdEntropist.py
Biskit/AmberCrdParser.py
Biskit/AmberEntropist.py
Biskit/AmberEntropyMaster.py
Biskit/AmberEntropySlave.py
Biskit/AmberLeap.py
Biskit/AmberParmBuilder.py
Biskit/AmberRstParser.py
Biskit/BioUnit.py
Biskit/BisList.py
Biskit/Blast2Seq.py
Biskit/ColorSpectrum.py
Biskit/CommandLine.py
Biskit/DSSP.py
Biskit/DictList.py
Biskit/EDParser.py
Biskit/EnsembleTraj.py
Biskit/ErrorHandler.py
Biskit/Errors.py
Biskit/ExeConfig.py
Biskit/ExeConfigCache.py
Biskit/Executor.py
Biskit/Fold_X.py
Biskit/FuzzyCluster.py
Biskit/Hmmer.py
Biskit/IcmCad.py
Biskit/LocalPath.py
Biskit/LogFile.py
Biskit/MatrixPlot.py
Biskit/Model.py
Biskit/ModelList.py
Biskit/PCRModel.py
Biskit/PDBCleaner.py
Biskit/PDBDope.py
Biskit/PDBModel.py
Biskit/PDBParseFile.py
Biskit/PDBParseModel.py
Biskit/PDBParseNCBI.py
Biskit/PDBParsePickle.py
Biskit/PDBParser.py
Biskit/PDBParserFactory.py
Biskit/Polymer.py
Biskit/ProfileCollection.py
Biskit/ProfileMirror.py
Biskit/Prosa2003.py
Biskit/Pymoler.py
Biskit/QualMaster.py
Biskit/QualSlave.py
Biskit/Ramachandran.py
Biskit/ReduceCoordinates.py
Biskit/SettingsManager.py
Biskit/SettingsParser.py
Biskit/SparseArray.py
Biskit/StructureMaster.py
Biskit/StructureSlave.py
Biskit/SurfaceRacer.py
Biskit/TrajCluster.py
Biskit/TrajFlexMaster.py
Biskit/TrajFlexSlave.py
Biskit/Trajectory.py
Biskit/WhatIf.py
Biskit/XplorInput.py
Biskit/Xplorer.py
Biskit/__init__.py
Biskit/amberResidueLibrary.py
Biskit/amberResidues.py
Biskit/atomCharger.py
Biskit/decorators.py
Biskit/delphi.py
Biskit/difflib_old.py
Biskit/ez_setup.py
Biskit/gnuplot.py
Biskit/hist.py
Biskit/match2seq.py
Biskit/mathUtils.py
Biskit/molTools.py
Biskit/molUtils.py
Biskit/msms.py
Biskit/plotUtils.py
Biskit/reduce.py
Biskit/residue.py
Biskit/rmsFit.py
Biskit/settings.py
Biskit/surfaceRacerTools.py
Biskit/test.py
Biskit/tmalign.py
Biskit/tools.py
Biskit/wlc.py
Biskit/wormlikechain.py
Biskit/Dock/Analyzer.py
Biskit/Dock/Complex.py
Biskit/Dock/ComplexEvolving.py
Biskit/Dock/ComplexEvolvingList.py
Biskit/Dock/ComplexList.py
Biskit/Dock/ComplexModelRegistry.py
Biskit/Dock/ComplexRandomizer.py
Biskit/Dock/ComplexTraj.py
Biskit/Dock/ContactMaster.py
Biskit/Dock/ContactSlave.py
Biskit/Dock/Docker.py
Biskit/Dock/FixedList.py
Biskit/Dock/HexParser.py
Biskit/Dock/Intervor.py
Biskit/Dock/PatchGenerator.py
Biskit/Dock/PatchGeneratorFromOrbit.py
Biskit/Dock/XRefineComplex.py
Biskit/Dock/__init__.py
Biskit/Dock/delphiBindingEnergy.py
Biskit/Dock/hexTools.py
Biskit/Dock/settings.py
Biskit/Mod/Aligner.py
Biskit/Mod/AlignerMaster.py
Biskit/Mod/AlignerSlave.py
Biskit/Mod/Analyse.py
Biskit/Mod/Benchmark.py
Biskit/Mod/CheckIdentities.py
Biskit/Mod/ModelMaster.py
Biskit/Mod/ModelSlave.py
Biskit/Mod/Modeller.py
Biskit/Mod/SequenceSearcher.py
Biskit/Mod/TemplateCleaner.py
Biskit/Mod/TemplateFilter.py
Biskit/Mod/TemplateSearcher.py
Biskit/Mod/ValidationSetup.py
Biskit/Mod/__init__.py
Biskit/Mod/modUtils.py
Biskit/Mod/settings.py
Biskit/PVM/ExampleMaster.py
Biskit/PVM/ExampleSlave.py
Biskit/PVM/PVMThread.py
Biskit/PVM/Status.py
Biskit/PVM/TrackingJobMaster.py
Biskit/PVM/__init__.py
Biskit/PVM/dispatcher.py
Biskit/PVM/hosts.py
Biskit/PVM/pvm.py
Biskit/ScientificIO/FortranFormat.py
Biskit/ScientificIO/PDB.py
Biskit/ScientificIO/PDBExportFilters.py
Biskit/ScientificIO/TextFile.py
Biskit/ScientificIO/__init__.py
Biskit/Statistics/Density.py
Biskit/Statistics/ROCalyzer.py
Biskit/Statistics/__init__.py
Biskit/Statistics/lognormal.py
Biskit/data/spectrum.pl
Biskit/data/amber/leap/ace_cap.pdb
Biskit/data/amber/leap/nme_cap.pdb
Biskit/data/amber/leap/solvate_box.leap
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Biskit/data/amber/residues/all_aminoct03.in
Biskit/data/amber/residues/all_aminont03.in
Biskit/data/amber/residues/all_nuc02.in
Biskit/data/amber/residues/uni_amino03.in
Biskit/data/amber/residues/uni_aminoct03.in
Biskit/data/amber/residues/uni_aminont03.in
Biskit/data/amber/template_pme_ensemble/hosts_eq.dat
Biskit/data/amber/template_pme_ensemble/postprocess.ptraj
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Biskit/data/amber/template_pme_ensemble/start_prod.csh
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Biskit/data/amber/template_pme_ensemble/1_min_solvent/min.inp
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Biskit/data/amber/template_pme_ensemble/2_md_xx/lamboot_if_needed.py
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Biskit/data/amber/template_pme_ensemble/2_md_xx/start_local.csh
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Biskit/data/amber/template_pme_ensemble_amber7/postprocess.ptraj
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Biskit/data/amber/template_pme_ensemble_amber7/1_min_solvent/min.inp
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Biskit/data/amber/template_pme_ensemble_amber7/2_md_xx/lamboot_if_needed.py
Biskit/data/amber/template_pme_ensemble_amber7/2_md_xx/start.csh
Biskit/data/amber/template_pme_ensemble_amber7/2_md_xx/start_local.csh
Biskit/data/amber/template_pme_ensemble_amber7/2_md_xx/2a_eq_solvent_coV/PREPARE.csh
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Biskit/data/amber/template_pme_ensemble_amber7/2_md_xx/2c_eq_solute/sim_0.inp
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Biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/lamboot_if_needed.py
Biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/start.csh
Biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/start_local.csh
Biskit/data/amber/template_pme_ensemble_amber9/2_md_xx/2a_eq_solvent_coV/PREPARE.csh
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Biskit/data/defaults/exe_delphi.dat
Biskit/data/defaults/exe_dsspcmbi.dat
Biskit/data/defaults/exe_fold_X.dat
Biskit/data/defaults/exe_hmmalign.dat
Biskit/data/defaults/exe_hmmfetch.dat
Biskit/data/defaults/exe_hmmindex.dat
Biskit/data/defaults/exe_hmmpfam.dat
Biskit/data/defaults/exe_icmbrowser.dat
Biskit/data/defaults/exe_intervor.dat
Biskit/data/defaults/exe_ls.dat
Biskit/data/defaults/exe_modeller.dat
Biskit/data/defaults/exe_msms.dat
Biskit/data/defaults/exe_pdb2xyzrn.dat
Biskit/data/defaults/exe_prosa2003.dat
Biskit/data/defaults/exe_ptraj.dat
Biskit/data/defaults/exe_pymol.dat
Biskit/data/defaults/exe_reduce.dat
Biskit/data/defaults/exe_surfaceracer.dat
Biskit/data/defaults/exe_t_coffee.dat
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Biskit/data/defaults/exe_whatif.dat
Biskit/data/defaults/exe_xplor.dat
Biskit/data/defaults/exe_xterm.dat
Biskit/data/defaults/hosts.py
Biskit/data/defaults/settings.cfg
Biskit/data/defaults/settings_Dock.cfg
Biskit/data/defaults/settings_Mod.cfg
Biskit/data/delphi/charm22.crg
Biskit/data/delphi/default.siz
Biskit/data/delphi/delphi_simple.prm
Biskit/data/delphi/prot_amb.crg
Biskit/data/matlab/plot_rms.m
Biskit/data/matlab/plot_single_rms.m
Biskit/data/modeller/model_mult.py_
Biskit/data/msms/atmtypenumbers
Biskit/data/msms/gpdb_to_xyzrn
Biskit/data/pdb/2JX1_nmr.pdb
Biskit/data/pdb/3BPY_xray.pdb
Biskit/data/pdb/master_hash.txt
Biskit/data/pdb/pdbdict.py
Biskit/data/pdb/remediator_python.1.56.080328.py
Biskit/data/pymol/color_b.py
Biskit/data/pymol/rubor.py
Biskit/data/reduce/reduce_wwPDB_het_dict.txt
Biskit/data/residues/XNP.pdb
Biskit/data/residues/amino_models.dict
Biskit/data/residues/create_residues.py
Biskit/data/residues/dna_models.dict
Biskit/data/residues/rna_models.dict
Biskit/data/residues/xnp_models.dict
Biskit/data/surface_racer_3/radii.txt
Biskit/data/xplor/pcr_crd2pdb.inp
Biskit/data/xplor/rb_minimize_complex.inp
Biskit/data/xplor/inpPcr/ExpSASAatA-J.inp
Biskit/data/xplor/inpPcr/lesA-J.inp
Biskit/data/xplor/inpPcr/modes.inp
Biskit/data/xplor/inpPcr/nbonds_19h2o.inp
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Biskit/deprecated/ChainSeparator.py
Biskit/deprecated/ChainWriter.py
Biskit/deprecated/__init__.py
Biskit/oldnumeric/__analyze_oldnumeric.py
Biskit/oldnumeric/__init__.py
Biskit/oldnumeric/alter_code.py
Biskit/oldnumeric/array_printer.py
Biskit/oldnumeric/compat.py
Biskit/oldnumeric/functions.py
Biskit/oldnumeric/misc.py
Biskit/oldnumeric/precision.py
Biskit/oldnumeric/typeconv.py
Biskit/oldnumeric/ufuncs.py
Biskit/testdata/test.howto
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Biskit/testdata/test_modeling.txt
Biskit/testdata/test_modeling_validation.txt
Biskit/testdata/test_modeling_validation.zsh
Biskit/testdata/test_multidock.txt
Biskit/testdata/test_multidock.zsh
Biskit/testdata/Mod/test_blastclust.fasta
Biskit/testdata/Mod/project/target.fasta
Biskit/testdata/Mod/project/modeller/PDBModels.list
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Biskit/testdata/Mod/project/sequences/nr.fasta
Biskit/testdata/Mod/project/t_coffee/final.pir_aln
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Biskit/testdata/Mod/project/templates/modeller/1K8U_A.pdb
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Biskit/testdata/Mod/project/templates/nr/1DT7.pdb
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Biskit/testdata/Mod/project/templates/nr/1K2H.pdb
Biskit/testdata/Mod/project/templates/nr/1K8U.pdb
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