Package: xcms
Version: 3.4.4
Date: 2019-02-06
Title: LC/MS and GC/MS Data Analysis
Author: Colin A. Smith <csmith@scripps.edu>,
    Ralf Tautenhahn <rtautenh@gmail.com>,
    Steffen Neumann <sneumann@ipb-halle.de>,
    Paul Benton <hpbenton@scripps.edu>,
    Christopher Conley <cjconley@ucdavis.edu>,
    Johannes Rainer <Johannes.Rainer@eurac.edu>
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>
Depends: R (>= 2.14.0), methods, Biobase, BiocParallel (>= 1.8.0),
        MSnbase (>= 2.7.8)
Imports: mzR (>= 2.13.1), BiocGenerics, ProtGenerics, lattice,
        RColorBrewer, plyr, RANN, multtest, MassSpecWavelet (>= 1.5.2),
        S4Vectors, robustbase
Suggests: BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata, ncdf4,
        rgl, microbenchmark, testthat, pander, magrittr, MALDIquant
Enhances: Rgraphviz, Rmpi, XML
Description: Framework for processing and visualization of chromatographically
    separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF,
    mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted
    analyte profiling.
License: GPL (>= 2) + file LICENSE
URL: http://metlin.scripps.edu/download/ and
        https://github.com/sneumann/xcms
VignetteBuilder: knitr
BugReports: https://github.com/sneumann/xcms/issues/new
biocViews: ImmunoOncology, MassSpectrometry, Metabolomics
RoxygenNote: 6.1.1
Collate: 'AllGenerics.R' 'DataClasses.R' 'Deprecated.R' 'MPI.R' 'c.R'
        'cwTools.R' 'databases.R' 'functions-MsFeatureData.R'
        'do_adjustRtime-functions.R' 'functions-binning.R'
        'do_findChromPeaks-functions.R' 'functions-Params.R'
        'do_groupChromPeaks-functions.R' 'fastMatch.R'
        'functions-utils.R' 'functions-IO.R' 'functions-OnDiskMSnExp.R'
        'functions-ProcessHistory.R' 'functions-XCMSnExp.R'
        'functions-imputation.R' 'functions-normalization.R'
        'functions-xcmsEIC.R' 'functions-xcmsFragments.R'
        'functions-xcmsRaw.R' 'functions-xcmsSet.R' 'init.R'
        'matchpeaks.R' 'methods-Chromatogram.R' 'methods-IO.R'
        'methods-MsFeatureData.R' 'methods-OnDiskMSnExp.R'
        'methods-Params.R' 'methods-ProcessHistory.R'
        'methods-XCMSnExp.R' 'methods-xcmsEIC.R'
        'methods-xcmsFileSource.R' 'methods-xcmsFragments.R'
        'methods-xcmsPeaks.R' 'methods-xcmsRaw.R' 'methods-xcmsSet.R'
        'models.R' 'mzClust.R' 'netCDF.R' 'plotQC.R' 'ramp.R'
        'specDist.R' 'write.mzquantML.R' 'writemzdata.R' 'writemztab.R'
        'xcmsSource.R' 'zzz.R'
git_url: https://git.bioconductor.org/packages/xcms
git_branch: RELEASE_3_8
git_last_commit: 6a9e67f
git_last_commit_date: 2019-02-20
Date/Publication: 2019-02-20
NeedsCompilation: yes
Packaged: 2019-02-20 23:43:24 UTC; biocbuild
Built: R 3.5.1; x86_64-conda_cos6-linux-gnu; 2019-03-06 16:52:01 UTC; unix
