{% set version = "3.16.1" %}
{% set name = "xcms" %}
{% set bioc = "3.14" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: c9e87528867ee0acf4ca84c3086001a0
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>= 0.25.1), ncdf4, testthat, pander, magrittr, rmarkdown, multtest, MALDIquant, pheatmap, Spectra (>= 1.1.17), MsBackendMgf, progress
requirements:
  host:
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-biocgenerics >=0.40.0,<0.41.0'
    - 'bioconductor-biocparallel >=1.28.0,<1.29.0'
    - 'bioconductor-iranges >=2.28.0,<2.29.0'
    - 'bioconductor-massspecwavelet >=1.60.0,<1.61.0'
    - 'bioconductor-mscoreutils >=1.6.0,<1.7.0'
    - 'bioconductor-msfeatures >=1.2.0,<1.3.0'
    - 'bioconductor-msnbase >=2.20.0,<2.21.0'
    - 'bioconductor-mzr >=2.28.0,<2.29.0'
    - 'bioconductor-protgenerics >=1.26.0,<1.27.0'
    - 'bioconductor-s4vectors >=0.32.0,<0.33.0'
    - 'bioconductor-summarizedexperiment >=1.24.0,<1.25.0'
    - r-base
    - r-lattice
    - r-plyr
    - r-rann
    - r-rcolorbrewer
    - r-robustbase
    - libblas
    - liblapack
  run:
    - 'bioconductor-biobase >=2.54.0,<2.55.0'
    - 'bioconductor-biocgenerics >=0.40.0,<0.41.0'
    - 'bioconductor-biocparallel >=1.28.0,<1.29.0'
    - 'bioconductor-iranges >=2.28.0,<2.29.0'
    - 'bioconductor-massspecwavelet >=1.60.0,<1.61.0'
    - 'bioconductor-mscoreutils >=1.6.0,<1.7.0'
    - 'bioconductor-msfeatures >=1.2.0,<1.3.0'
    - 'bioconductor-msnbase >=2.20.0,<2.21.0'
    - 'bioconductor-mzr >=2.28.0,<2.29.0'
    - 'bioconductor-protgenerics >=1.26.0,<1.27.0'
    - 'bioconductor-s4vectors >=0.32.0,<0.33.0'
    - 'bioconductor-summarizedexperiment >=1.24.0,<1.25.0'
    - r-base
    - r-lattice
    - r-plyr
    - r-rann
    - r-rcolorbrewer
    - r-robustbase
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>= 2) + file LICENSE'
  summary: 'LC-MS and GC-MS Data Analysis'
  description: 'Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.'
  license_file: LICENSE

