# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Feb 28 01:07:48 2022
# ------------------------------------------------

package:
  name: bioconductor-xcms
  version: 3.16.1
source:
  md5: c9e87528867ee0acf4ca84c3086001a0
  url:
    - https://bioarchive.galaxyproject.org/xcms_3.16.1.tar.gz
    - https://bioconductor.org/packages/3.14/bioc/src/contrib/xcms_3.16.1.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-xcms/bioconductor-xcms_3.16.1_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41h619a076_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_6
    - gcc_impl_linux-64 10.3.0 hf2f2afa_12
    - gcc_linux-64 10.3.0 hc39de41_6
    - gxx_impl_linux-64 10.3.0 hf2f2afa_12
    - gxx_linux-64 10.3.0 h2593f52_6
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 10.3.0 he6cfe16_12
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgomp 11.2.0 h1d223b6_12
    - libsanitizer 10.3.0 h26c7422_12
    - libstdcxx-devel_linux-64 10.3.0 he6cfe16_12
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_6
    - bioconductor-affy 1.72.0 r41h5c21468_1
    - bioconductor-affyio 1.64.0 r41h5c21468_1
    - bioconductor-biobase 2.54.0 r41h5c21468_1
    - bioconductor-biocgenerics 0.40.0 r41hdfd78af_0
    - bioconductor-biocparallel 1.28.3 r41h619a076_0
    - bioconductor-delayedarray 0.20.0 r41h5c21468_1
    - bioconductor-genomeinfodb 1.30.0 r41hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.7 r41hdfd78af_1
    - bioconductor-genomicranges 1.46.1 r41h5c21468_0
    - bioconductor-impute 1.68.0 r41h77f299f_1
    - bioconductor-iranges 2.28.0 r41h5c21468_1
    - bioconductor-limma 3.50.1 r41h5c21468_0
    - bioconductor-massspecwavelet 1.60.0 r41h5c21468_1
    - bioconductor-matrixgenerics 1.6.0 r41hdfd78af_0
    - bioconductor-mscoreutils 1.6.1 r41h619a076_0
    - bioconductor-msfeatures 1.2.0 r41hdfd78af_0
    - bioconductor-msnbase 2.20.4 r41h619a076_0
    - bioconductor-mzid 1.32.0 r41hdfd78af_0
    - bioconductor-mzr 2.28.0 r41h619a076_1
    - bioconductor-pcamethods 1.86.0 r41h619a076_1
    - bioconductor-preprocesscore 1.56.0 r41h5c21468_1
    - bioconductor-protgenerics 1.26.0 r41hdfd78af_0
    - bioconductor-rhdf5lib 1.16.0 r41h5c21468_1
    - bioconductor-s4vectors 0.32.3 r41h5c21468_0
    - bioconductor-summarizedexperiment 1.24.0 r41hdfd78af_0
    - bioconductor-vsn 3.62.0 r41h5c21468_1
    - bioconductor-xvector 0.34.0 r41h5c21468_1
    - bioconductor-zlibbioc 1.40.0 r41h5c21468_1
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2021.10.8 ha878542_0
    - cairo 1.16.0 ha00ac49_1009
    - curl 7.81.0 h494985f_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.96 ha180cfb_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.4.0 h03d3576_12
    - gcc_linux-64 9.4.0 h391b98a_6
    - gettext 0.19.8.1 h73d1719_1008
    - gfortran_impl_linux-64 9.4.0 h0003116_12
    - gfortran_linux-64 9.4.0 hf0ab688_6
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 9.4.0 h03d3576_12
    - gxx_linux-64 9.4.0 h0316aca_6
    - harfbuzz 3.4.0 hb4a5f5f_0
    - hdf4 4.2.15 h10796ff_3
    - hdf5 1.12.1 nompi_h7f166f4_103
    - icu 69.1 h9c3ff4c_0
    - jbig 2.1 h7f98852_2003
    - jpeg 9e h7f98852_0
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - krb5 1.19.2 h48eae69_3
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - lerc 3.0 h9c3ff4c_0
    - libblas 3.8.0 11_h86c2bf4_netlib
    - libcblas 3.8.0 11_h86c2bf4_netlib
    - libcurl 7.81.0 h494985f_0
    - libdeflate 1.10 h7f98852_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 9.4.0 hd854feb_12
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgfortran-ng 11.2.0 h69a702a_12
    - libgfortran5 11.2.0 h5c6108e_12
    - libglib 2.70.2 h174f98d_4
    - libgomp 11.2.0 h1d223b6_12
    - libiconv 1.16 h516909a_0
    - liblapack 3.8.0 11_h86c2bf4_netlib
    - libnetcdf 4.8.1 nompi_hb3fd0d9_101
    - libnghttp2 1.47.0 he49606f_0
    - libpng 1.6.37 h21135ba_2
    - libsanitizer 9.4.0 h79bfe98_12
    - libssh2 1.10.0 ha35d2d1_2
    - libstdcxx-devel_linux-64 9.4.0 hd854feb_12
    - libstdcxx-ng 11.2.0 he4da1e4_12
    - libtiff 4.3.0 h542a066_3
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.2 h7f98852_1
    - libxcb 1.13 h7f98852_1004
    - libxml2 2.9.12 h885dcf4_1
    - libzip 1.8.0 h1c5bbd1_1
    - libzlib 1.2.11 h36c2ea0_1013
    - lz4-c 1.9.3 h9c3ff4c_1
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 3.0.0 h7f98852_2
    - pango 1.50.3 h9967ed3_0
    - pcre 8.45 h9c3ff4c_0
    - pcre2 10.37 h032f7d1_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-assertthat 0.2.1 r41hc72bb7e_2
    - r-backports 1.4.1 r41hcfec24a_0
    - r-base 4.1.2 h2553ce4_1
    - r-bh 1.78.0_0 r41hc72bb7e_0
    - r-biocmanager 1.30.16 r41hc72bb7e_0
    - r-bitops 1.0_7 r41hcfec24a_0
    - r-brio 1.1.3 r41hcfec24a_0
    - r-callr 3.7.0 r41hc72bb7e_0
    - r-cli 3.2.0 r41h03ef668_0
    - r-clue 0.3_60 r41hcfec24a_0
    - r-cluster 2.1.2 r41h859d828_0
    - r-codetools 0.2_18 r41hc72bb7e_0
    - r-colorspace 2.0_3 r41h06615bd_0
    - r-crayon 1.5.0 r41hc72bb7e_0
    - r-deoptimr 1.0_10 r41hc72bb7e_0
    - r-desc 1.4.0 r41hc72bb7e_0
    - r-diffobj 0.3.5 r41hcfec24a_0
    - r-digest 0.6.29 r41h03ef668_0
    - r-doparallel 1.0.17 r41hc72bb7e_0
    - r-ellipsis 0.3.2 r41hcfec24a_0
    - r-evaluate 0.15 r41hc72bb7e_0
    - r-fansi 1.0.2 r41hcfec24a_0
    - r-farver 2.1.0 r41h03ef668_0
    - r-foreach 1.5.2 r41hc72bb7e_0
    - r-formatr 1.11 r41hc72bb7e_0
    - r-futile.logger 1.4.3 r41hc72bb7e_1003
    - r-futile.options 1.0.1 r41hc72bb7e_1002
    - r-ggplot2 3.3.5 r41hc72bb7e_0
    - r-glue 1.6.2 r41h06615bd_0
    - r-gtable 0.3.0 r41hc72bb7e_3
    - r-isoband 0.2.5 r41h03ef668_0
    - r-iterators 1.0.14 r41hc72bb7e_0
    - r-jsonlite 1.8.0 r41h06615bd_0
    - r-labeling 0.4.2 r41hc72bb7e_1
    - r-lambda.r 1.2.4 r41hc72bb7e_1
    - r-lattice 0.20_45 r41hcfec24a_0
    - r-lifecycle 1.0.1 r41hc72bb7e_0
    - r-magrittr 2.0.2 r41hcfec24a_0
    - r-maldiquant 1.21 r41h7f98852_0
    - r-mass 7.3_55 r41hcfec24a_0
    - r-matrix 1.4_0 r41he454529_0
    - r-matrixstats 0.61.0 r41hcfec24a_0
    - r-mgcv 1.8_39 r41h0154571_0
    - r-munsell 0.5.0 r41hc72bb7e_1004
    - r-ncdf4 1.19 r41h186726c_0
    - r-nlme 3.1_155 r41h859d828_0
    - r-pillar 1.7.0 r41hc72bb7e_0
    - r-pkgconfig 2.0.3 r41hc72bb7e_1
    - r-pkgload 1.2.4 r41h03ef668_0
    - r-plyr 1.8.6 r41h03ef668_1
    - r-praise 1.0.0 r41hc72bb7e_1005
    - r-processx 3.5.2 r41hcfec24a_0
    - r-ps 1.6.0 r41hcfec24a_0
    - r-r6 2.5.1 r41hc72bb7e_0
    - r-rann 2.6.1 r41h03ef668_2
    - r-rcolorbrewer 1.1_2 r41h785f33e_1003
    - r-rcpp 1.0.8 r41h03ef668_0
    - r-rcurl 1.98_1.6 r41hcfec24a_0
    - r-rematch2 2.1.2 r41hc72bb7e_1
    - r-rlang 0.4.12 r41hcfec24a_0
    - r-robustbase 0.93_9 r41h52d45c5_0
    - r-rprojroot 2.0.2 r41hc72bb7e_0
    - r-rstudioapi 0.13 r41hc72bb7e_0
    - r-scales 1.1.1 r41hc72bb7e_0
    - r-snow 0.4_4 r41hc72bb7e_0
    - r-testthat 3.1.2 r41h03ef668_0
    - r-tibble 3.1.6 r41hcfec24a_0
    - r-utf8 1.2.2 r41hcfec24a_0
    - r-vctrs 0.3.8 r41hcfec24a_1
    - r-viridislite 0.4.0 r41hc72bb7e_0
    - r-waldo 0.3.1 r41hc72bb7e_0
    - r-waveslim 1.8.2 r41h859d828_2
    - r-withr 2.4.3 r41hc72bb7e_0
    - r-xml 3.99_0.9 r41h06615bd_0
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.2 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h36c2ea0_1013
    - zstd 1.5.2 ha95c52a_0
  run:
    - bioconductor-biobase >=2.54.0,<2.55.0
    - bioconductor-biocgenerics >=0.40.0,<0.41.0
    - bioconductor-biocparallel >=1.28.0,<1.29.0
    - bioconductor-iranges >=2.28.0,<2.29.0
    - bioconductor-massspecwavelet >=1.60.0,<1.61.0
    - bioconductor-mscoreutils >=1.6.0,<1.7.0
    - bioconductor-msfeatures >=1.2.0,<1.3.0
    - bioconductor-msnbase >=2.20.0,<2.21.0
    - bioconductor-mzr >=2.28.0,<2.29.0
    - bioconductor-protgenerics >=1.26.0,<1.27.0
    - bioconductor-s4vectors >=0.32.0,<0.33.0
    - bioconductor-summarizedexperiment >=1.24.0,<1.25.0
    - libblas >=3.8.0,<4.0a0
    - libgcc-ng >=10.3.0
    - liblapack >=3.8.0,<4.0a0
    - libstdcxx-ng >=10.3.0
    - r-base >=4.1,<4.2.0a0
    - r-lattice
    - r-plyr
    - r-rann
    - r-rcolorbrewer
    - r-robustbase
test:
  commands:
    - $R -e "library('xcms')"
about:
  description: Framework for processing and visualization of chromatographically separated
    and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData
    and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.
  home: https://bioconductor.org/packages/3.14/bioc/html/xcms.html
  license: GPL (>= 2) + file LICENSE
  license_file: LICENSE
  summary: LC-MS and GC-MS Data Analysis
extra:
  copy_test_source_files: true
  final: true
