Package: xcms
Version: 3.12.0
Title: LC-MS and GC-MS Data Analysis
Authors@R: c(
	   person(given = "Colin A.", family = "Smith",
	   email = "csmith@scripps.edu",
	   role = "ctb"),
	   person(given = "Ralf", family = "Tautenhahn",
	   email = "rtautenh@gmail.com",
	   role = "ctb"),
	   person(given = "Steffen", family = "Neumann",
	   email = "sneumann@ipb-halle.de",
	   role = c("aut", "cre"),
	   comment = c(ORCID = "0000-0002-7899-7192")),
	   person(given = "Paul", family = "Benton",
	   email = "hpbenton@scripps.edu",
	   role = "ctb"),
	   person(given = "Christopher", family = "Conley",
	   email = "cjconley@ucdavis.edu",
	   role = "ctb"),
	   person(given = "Johannes", family = "Rainer",
	   email = "johannes.rainer@eurac.edu",
	   role = "ctb",
	   comment = c(ORCID = "0000-0002-6977-7147")),
	   person(given = "Michael", family = "Witting",
	   email = "michael.witting@helmholtz-muenchen.de",
	   role = "ctb"),
	   person(given = "William", family = "Kumler",
	   email = "wkumler@uw.edu", role = "ctb",
	   comment = c(ORCID = "0000-0002-5022-8009"))
	   )
Author: Colin A. Smith <csmith@scripps.edu>,
    Ralf Tautenhahn <rtautenh@gmail.com>,
    Steffen Neumann <sneumann@ipb-halle.de>,
    Paul Benton <hpbenton@scripps.edu>,
    Christopher Conley <cjconley@ucdavis.edu>,
    Johannes Rainer <Johannes.Rainer@eurac.edu>,
    Michael Witting <michael.witting@helmholtz-muenchen.de>
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>
Depends: R (>= 3.5.0), methods, Biobase, BiocParallel (>= 1.8.0),
        MSnbase (>= 2.15.3)
Imports: mzR (>= 2.19.5), BiocGenerics, ProtGenerics (>= 1.17.2),
        lattice, RColorBrewer, plyr, RANN, MassSpecWavelet (>= 1.5.2),
        S4Vectors, robustbase, IRanges, SummarizedExperiment,
        MsCoreUtils
Suggests: BiocStyle, caTools, knitr (>= 1.1.0), faahKO, msdata (>=
        0.25.1), ncdf4, rgl, microbenchmark, testthat, pander,
        magrittr, multtest, MALDIquant, pheatmap
Enhances: Rgraphviz, XML
Description: Framework for processing and visualization of chromatographically
    separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF,
    mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted
    analyte profiling.
License: GPL (>= 2) + file LICENSE
URL: https://github.com/sneumann/xcms
VignetteBuilder: knitr
BugReports: https://github.com/sneumann/xcms/issues/new
biocViews: ImmunoOncology, MassSpectrometry, Metabolomics
RoxygenNote: 7.1.1
Collate: 'AllGenerics.R' 'functions-XChromatograms.R'
        'functions-XChromatogram.R' 'DataClasses.R' 'Deprecated.R'
        'MPI.R' 'c.R' 'cwTools.R' 'databases.R'
        'functions-MsFeatureData.R' 'do_adjustRtime-functions.R'
        'functions-binning.R' 'do_findChromPeaks-functions.R'
        'functions-Params.R' 'do_groupChromPeaks-functions.R'
        'fastMatch.R' 'functions-Chromatogram.R' 'functions-utils.R'
        'functions-IO.R' 'functions-OnDiskMSnExp.R'
        'functions-ProcessHistory.R' 'functions-XCMSnExp.R'
        'functions-imputation.R' 'functions-normalization.R'
        'functions-xcmsEIC.R' 'functions-xcmsFragments.R'
        'functions-xcmsRaw.R' 'functions-xcmsSet.R'
        'functions-xcmsSwath.R' 'init.R' 'matchpeaks.R'
        'methods-Chromatogram.R' 'methods-IO.R'
        'methods-MChromatograms.R' 'methods-MsFeatureData.R'
        'methods-OnDiskMSnExp.R' 'methods-Params.R'
        'methods-ProcessHistory.R' 'methods-XCMSnExp.R'
        'methods-XChromatogram.R' 'methods-XChromatograms.R'
        'methods-xcmsEIC.R' 'methods-xcmsFileSource.R'
        'methods-xcmsFragments.R' 'methods-xcmsPeaks.R'
        'methods-xcmsRaw.R' 'methods-xcmsSet.R' 'models.R' 'mzClust.R'
        'plotQC.R' 'ramp.R' 'specDist.R' 'write.mzquantML.R'
        'writemzdata.R' 'writemztab.R' 'xcmsSource.R' 'zzz.R'
git_url: https://git.bioconductor.org/packages/xcms
git_branch: RELEASE_3_12
git_last_commit: 1518ef3
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: yes
Packaged: 2020-10-28 04:22:01 UTC; biocbuild
Built: R 4.0.3; x86_64-conda-linux-gnu; 2021-03-30 07:01:23 UTC; unix
