Package: VanillaICE
Version: 1.40.0
Title: A Hidden Markov Model for high throughput genotyping arrays
Author: Robert Scharpf <rscharpf@jhu.edu>, Kevin Scharpf, and Ingo Ruczinski
    <ingo@jhsph.edu>
Maintainer: Robert Scharpf <rscharpf@jhsph.edu>
Description: Hidden Markov Models for characterizing chromosomal alterations in
    high throughput SNP arrays.
Date: Sat Sep 27 11:46:03 EDT 2014
Depends: R (>= 3.0.0), BiocGenerics (>= 0.13.6), GenomicRanges (>=
        1.27.6), SummarizedExperiment (>= 1.5.3)
Imports: Biobase, S4Vectors (>= 0.9.25), IRanges (>= 1.14.0),
        oligoClasses (>= 1.31.1), foreach, matrixStats, data.table,
        grid, lattice, methods, GenomeInfoDb (>= 1.11.4), crlmm, tools,
        stats, utils, BSgenome.Hsapiens.UCSC.hg18
Suggests: RUnit, SNPchip, human610quadv1bCrlmm, ArrayTV
Collate: 'AllClasses.R' 'AllGenerics.R' 'datasets.R' 'functions.R'
        'help.R' 'hmm-methods.R' 'methods-ArrayViews.R'
        'methods-CopyNumScanParams.R' 'methods-EmissionParam.R'
        'methods-FilterParam.R' 'methods-HMM.R' 'methods-HMMList.R'
        'methods-HmmGRanges.R' 'methods-HmmParam.R'
        'methods-HmmTrellisParam.R' 'methods-IdiogramParams.R'
        'methods-LogLik.R' 'methods-SnpArrayExperiment.R'
        'methods-SnpDataFrame.R' 'methods-TransitionParam.R'
        'methods-Viterbi.R' 'updates.R' 'zzz.R'
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
License: LGPL-2
LazyLoad: yes
biocViews: CopyNumberVariation
Roxygen: list(wrap=FALSE)
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2017-10-30 22:49:03 UTC; biocbuild
Built: R 3.4.1; x86_64-pc-linux-gnu; 2018-02-16 12:04:11 UTC; unix
