universalmotif-pkg-package	universalmotif-pkg
add_multifreq	add_multifreq
ArabidopsisMotif	ArabidopsisMotif
ArabidopsisPromoters	ArabidopsisPromoters
as.data.frame	reexports
as.data.frame,universalmotif-method	universalmotif-class
cbind	reexports
cbind,universalmotif-method	universalmotif-class
colMeans	reexports
colMeans,universalmotif-method	universalmotif-class
colnames	reexports
colnames,universalmotif-method	universalmotif-class
colSums	reexports
colSums,universalmotif-method	universalmotif-class
compare_motifs	compare_motifs
consensus_to_ppm	utilities
consensus_to_ppmAA	utilities
convert_motifs	convert_motifs
convert_motifs,ICMatrix-method	convert_motifs
convert_motifs,list-method	convert_motifs
convert_motifs,matrix-method	convert_motifs
convert_motifs,Motif-method	convert_motifs
convert_motifs,MotifList-method	convert_motifs
convert_motifs,pcm-method	convert_motifs
convert_motifs,pfm-method	convert_motifs
convert_motifs,PFMatrix-method	convert_motifs
convert_motifs,PWM-method	convert_motifs
convert_motifs,pwm-method	convert_motifs
convert_motifs,PWMatrix-method	convert_motifs
convert_motifs,TFFMFirst-method	convert_motifs
convert_motifs,universalmotif-method	convert_motifs
convert_motifs,XMatrixList-method	convert_motifs
convert_type	convert_type
create_motif	create_motif
create_motif,AAStringSet-method	create_motif
create_motif,BStringSet-method	create_motif
create_motif,character-method	create_motif
create_motif,DNAStringSet-method	create_motif
create_motif,matrix-method	create_motif
create_motif,missing-method	create_motif
create_motif,numeric-method	create_motif
create_motif,RNAStringSet-method	create_motif
create_sequences	create_sequences
enrich_motifs	enrich_motifs
examplemotif	examplemotif
examplemotif2	examplemotif2
filter_motifs	filter_motifs
get_consensus	utilities
get_consensusAA	utilities
icm_to_ppm	utilities
initialize,universalmotif-method	universalmotif-class
JASPAR2018_CORE_DBSCORES	JASPAR2018_CORE_DBSCORES
JASPAR2018_CORE_DBSCORES_NORM	JASPAR2018_CORE_DBSCORES_NORM
make_DBscores	utilities
merge_motifs	merge_motifs
motif_pvalue	motif_pvalue
motif_rc	motif_rc
motif_tree	motif_tree
ncol	reexports
ncol,universalmotif-method	universalmotif-class
normalize	reexports
normalize,universalmotif-method	universalmotif-class
nrow	reexports
nrow,universalmotif-method	universalmotif-class
pcm_to_ppm	utilities
position_icscore	utilities
ppm_to_icm	utilities
ppm_to_pcm	utilities
ppm_to_pwm	utilities
pwm_to_ppm	utilities
read_cisbp	read_cisbp
read_homer	read_homer
read_jaspar	read_jaspar
read_matrix	read_matrix
read_meme	read_meme
read_motifs	read_motifs
read_transfac	read_transfac
read_uniprobe	read_uniprobe
reexports	reexports
rowMeans	reexports
rowMeans,universalmotif-method	universalmotif-class
rownames	reexports
rownames,universalmotif-method	universalmotif-class
rowSums	reexports
rowSums,universalmotif-method	universalmotif-class
run_meme	run_meme
sample_sites	sample_sites
scan_sequences	scan_sequences
show,universalmotif-method	universalmotif-class
shuffle_motifs	shuffle_motifs
shuffle_sequences	shuffle_sequences
subset	reexports
subset,universalmotif-method	universalmotif-class
summarise_motifs	utilities
switch_alph	switch_alph
trim_motifs	trim_motifs
universalmotif	universalmotif-class
universalmotif-class	universalmotif-class
universalmotif-pkg	universalmotif-pkg
utilities	utilities
view_motifs	view_motifs
write_homer	write_homer
write_jaspar	write_jaspar
write_matrix	write_matrix
write_meme	write_meme
write_motifs	write_motifs
write_transfac	write_transfac
[,universalmotif,ANY,ANY,ANY-method	universalmotif-class
[,universalmotif-method	universalmotif-class
[<-,universalmotif,ANY,ANY,ANY-method	universalmotif-class
[<-,universalmotif-method	universalmotif-class
