# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Jan  1 06:52:27 2019
# ------------------------------------------------

package:
    name: bioconductor-trigger
    version: 1.28.0
source:
    md5: 26b0b707b709215845adcd78059c142f
    url:
        - https://bioarchive.galaxyproject.org/trigger_1.28.0.tar.gz
        - https://bioconductor.org/packages/3.8/bioc/src/contrib/trigger_1.28.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-trigger/bioconductor-trigger_1.28.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351h14c3975_0
requirements:
    build:
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_3
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_3
        - libgcc-ng 7.3.0 hdf63c60_0
        - libstdcxx-ng 7.3.0 hdf63c60_0
        - make 4.2.1 h14c3975_2002
    host:
        - _r-mutex 1.0.0 anacondar_1
        - binutils_impl_linux-64 2.31.1 h6176602_1
        - binutils_linux-64 2.31.1 h6176602_3
        - bioconductor-annotate 1.60.0 r351_0
        - bioconductor-annotationdbi 1.44.0 r351_0
        - bioconductor-biobase 2.42.0 r351h14c3975_0
        - bioconductor-biocgenerics 0.28.0 r351_1
        - bioconductor-biocparallel 1.16.2 r351h1c2f66e_1
        - bioconductor-genefilter 1.64.0 r351h1c2f66e_0
        - bioconductor-iranges 2.16.0 r351h14c3975_0
        - bioconductor-limma 3.38.3 r351h14c3975_0
        - bioconductor-qvalue 2.14.0 r351_0
        - bioconductor-s4vectors 0.20.1 r351h14c3975_0
        - bioconductor-sva 3.30.0 r351h14c3975_0
        - bwidget 1.9.11 1
        - bzip2 1.0.6 h14c3975_1002
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h80bd089_1005
        - curl 7.63.0 h646f8bb_1000
        - fontconfig 2.13.1 h2176d3f_1000
        - freetype 2.9.1 h3cfcefd_1004
        - gcc_impl_linux-64 7.3.0 habb00fd_1
        - gcc_linux-64 7.3.0 h553295d_3
        - gettext 0.19.8.1 h9745a5d_1001
        - gfortran_impl_linux-64 7.3.0 hdf63c60_1
        - gfortran_linux-64 7.3.0 h553295d_3
        - glib 2.56.2 had28632_1001
        - graphite2 1.3.13 hf484d3e_1000
        - gxx_impl_linux-64 7.3.0 hdf63c60_1
        - gxx_linux-64 7.3.0 h553295d_3
        - harfbuzz 1.9.0 he243708_1001
        - icu 58.2 hf484d3e_1000
        - jpeg 9c h14c3975_1001
        - krb5 1.16.2 hc83ff2d_1000
        - libcurl 7.63.0 h01ee5af_1000
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 hf484d3e_1005
        - libgcc-ng 7.3.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_0
        - libiconv 1.15 h14c3975_1003
        - libpng 1.6.36 h84994c4_1000
        - libssh2 1.8.0 h1ad7b7a_1003
        - libstdcxx-ng 7.3.0 hdf63c60_0
        - libtiff 4.0.10 h648cc4a_1001
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.8 h143f9aa_1005
        - make 4.2.1 h14c3975_2002
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.0.2p h14c3975_1001
        - pango 1.40.14 h53a7087_1002
        - pcre 8.41 hf484d3e_1003
        - pixman 0.34.0 h14c3975_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-assertthat 0.2.0 r351h6115d3f_1001
        - r-base 3.5.1 he45234b_1005
        - r-bh 1.66.0_1 r351_2001
        - r-bit 1.1_12 r351h14c3975_1002
        - r-bit64 0.9_7 r351h96ca727_1000
        - r-bitops 1.0_6 r351h96ca727_1002
        - r-blob 1.1.1 r351_1001
        - r-cli 1.0.0 r351h6115d3f_1001
        - r-colorspace 1.3_2 r351h96ca727_1002
        - r-corpcor 1.6.9 r351h6115d3f_1001
        - r-crayon 1.3.4 r351h6115d3f_1001
        - r-dbi 1.0.0 r351h6115d3f_1001
        - r-digest 0.6.18 r351h96ca727_1000
        - r-fansi 0.3.0 r351h96ca727_1000
        - r-formatr 1.5 r351h6115d3f_1001
        - r-futile.logger 1.4.3 r351h6115d3f_1001
        - r-futile.options 1.0.1 r351h6115d3f_1000
        - r-ggplot2 3.1.0 r351h6115d3f_1000
        - r-glue 1.3.0 r351h14c3975_1002
        - r-gtable 0.2.0 r351h6115d3f_1001
        - r-labeling 0.3 r351h6115d3f_1001
        - r-lambda.r 1.2.3 r351h6115d3f_1000
        - r-lattice 0.20_38 r351h96ca727_1000
        - r-lazyeval 0.2.1 r351h96ca727_1002
        - r-magrittr 1.5 r351h6115d3f_1001
        - r-mass 7.3_50 r351h96ca727_1002
        - r-matrix 1.2_14 r351h96ca727_1002
        - r-matrixstats 0.54.0 r351h96ca727_1000
        - r-memoise 1.1.0 r351h6115d3f_1001
        - r-mgcv 1.8_24 r351h96ca727_1002
        - r-munsell 0.5.0 r351h6115d3f_1001
        - r-nlme 3.1_137 r351ha65eedd_1000
        - r-pillar 1.3.0 r351h6115d3f_1000
        - r-pkgconfig 2.0.2 r351h6115d3f_1001
        - r-plogr 0.2.0 r351h6115d3f_1001
        - r-plyr 1.8.4 r351h29659fb_1002
        - r-prettyunits 1.0.2 r351h6115d3f_1001
        - r-qtl 1.41_6 r351h14c3975_1001
        - r-r6 2.2.2 r351h6115d3f_1001
        - r-rcolorbrewer 1.1_2 r351h6115d3f_1001
        - r-rcpp 1.0.0 r351h29659fb_1000
        - r-rcurl 1.95_4.11 r351h96ca727_1003
        - r-reshape2 1.4.3 r351h29659fb_1002
        - r-rlang 0.3.0.1 r351h14c3975_1000
        - r-rsqlite 2.1.1 r351h29659fb_1000
        - r-scales 1.0.0 r351h29659fb_1001
        - r-snow 0.4_3 r351h6115d3f_1000
        - r-stringi 1.2.4 r351h29659fb_1001
        - r-stringr 1.3.1 r351h6115d3f_1001
        - r-survival 2.42_6 r351h96ca727_1001
        - r-tibble 1.4.2 r351h96ca727_1002
        - r-utf8 1.1.4 r351h96ca727_1000
        - r-viridislite 0.3.0 r351h6115d3f_1001
        - r-withr 2.1.2 r351h6115d3f_1000
        - r-xml 3.98_1.16 r351h96ca727_1000
        - r-xtable 1.8_3 r351_2000
        - readline 7.0 hf8c457e_1001
        - tk 8.6.9 h84994c4_1000
        - tktable 2.10 h14c3975_0
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.9 h14c3975_1004
        - xorg-libsm 1.2.3 h4937e3b_1000
        - xorg-libx11 1.6.6 h14c3975_1000
        - xorg-libxau 1.0.8 h14c3975_1006
        - xorg-libxdmcp 1.1.2 h14c3975_1007
        - xorg-libxext 1.3.3 h14c3975_1004
        - xorg-libxrender 0.9.10 h14c3975_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h14c3975_1003
    run:
        - bioconductor-qvalue >=2.14.0,<2.15.0
        - bioconductor-sva >=3.30.0,<3.31.0
        - libgcc-ng >=7.3.0
        - r-base >=3.5.1,<3.5.2.0a0
        - r-corpcor
        - r-qtl
test:
    commands:
        - $R -e "library('trigger')"
about:
    home: https://bioconductor.org/packages/3.8/bioc/html/trigger.html
    license: GPL-3
    summary: 'This R package provides tools for the statistical analysis of integrative
        genomic data that involve some combination of: genotypes, high-dimensional
        intermediate traits (e.g., gene expression, protein abundance), and higher-order
        traits (phenotypes). The package includes functions to: (1) construct global
        linkage maps between genetic markers and gene expression; (2) analyze multiple-locus
        linkage (epistasis) for gene expression; (3) quantify the proportion of genome-wide
        variation explained by each locus and identify eQTL hotspots; (4) estimate
        pair-wise causal gene regulatory probabilities and construct gene regulatory
        networks; and (5) identify causal genes for a quantitative trait of interest.'
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:trigger
        - doi:10.1038/nmeth.3252
